Citrus Sinensis ID: 011267
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 489 | 2.2.26 [Sep-21-2011] | |||||||
| P92947 | 493 | Monodehydroascorbate redu | yes | no | 0.981 | 0.973 | 0.800 | 0.0 | |
| Q40977 | 433 | Monodehydroascorbate redu | N/A | no | 0.815 | 0.921 | 0.456 | 1e-103 | |
| Q43497 | 433 | Monodehydroascorbate redu | N/A | no | 0.822 | 0.928 | 0.450 | 1e-103 | |
| Q9LFA3 | 434 | Probable monodehydroascor | no | no | 0.822 | 0.926 | 0.436 | 1e-93 | |
| Q42711 | 434 | Monodehydroascorbate redu | N/A | no | 0.834 | 0.940 | 0.456 | 2e-93 | |
| Q93WJ8 | 435 | Probable monodehydroascor | no | no | 0.785 | 0.882 | 0.428 | 2e-92 | |
| Q9LK94 | 488 | Probable monodehydroascor | no | no | 0.779 | 0.780 | 0.426 | 3e-92 | |
| Q9SR59 | 441 | Probable monodehydroascor | no | no | 0.783 | 0.868 | 0.407 | 4e-86 | |
| P43494 | 427 | Rhodocoxin reductase OS=R | yes | no | 0.658 | 0.754 | 0.322 | 5e-39 | |
| D5IGG6 | 414 | Ferredoxin--NAD(P)(+) red | N/A | no | 0.736 | 0.869 | 0.297 | 4e-36 |
| >sp|P92947|MDARP_ARATH Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/487 (80%), Positives = 429/487 (88%), Gaps = 7/487 (1%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
MA S +L K GLSLWCP SPSL R R S R V A SFANENREFVI
Sbjct: 8 MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65
Query: 57 VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66 VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125
Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
CVG GGERQTP+WYKEKGIE+IY+DPV D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVK GASI NLEAGSDGRV+AVKL DGSTI+
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVK-GASINNLEAGSDGRVSAVKLADGSTIE 304
Query: 297 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 356
ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT PGIFAIGDVAAFPLK+YDR
Sbjct: 305 ADTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMT 364
Query: 357 RVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI 416
RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+
Sbjct: 365 RVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETV 424
Query: 417 EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEAL 476
E+GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL ASSVEEAL
Sbjct: 425 EVGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEAL 484
Query: 477 EIARAAL 483
EIA+AAL
Sbjct: 485 EIAQAAL 491
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 6EC: .EC: 5EC: .EC: 4 |
| >sp|Q40977|MDAR_PEA Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 377 bits (967), Expect = e-103, Method: Compositional matrix adjust.
Identities = 193/423 (45%), Positives = 271/423 (64%), Gaps = 24/423 (5%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
+++I+GGG +AGYAAR FV+ G+ G L I+SKEA APYERPAL+K YLFP + PARLP
Sbjct: 6 KYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPALSKAYLFP--ESPARLP 63
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
GFHTCVGSGGER PEWY EKGI++ + S D+ + L + +G+ Y +L++ATG
Sbjct: 64 GFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIATGS 123
Query: 173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVG 228
R + IG + Y+R+V DAD L ++++ K K VVVGGGYIG+E++A
Sbjct: 124 AVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVLKL 183
Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK 288
LD T+++PE + RLFT +A YE Y G+ +K G A SDG V VK
Sbjct: 184 NDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIK-GTVAVGFTANSDGEVKEVK 242
Query: 289 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
L+DG ++AD +++G+G +P +S F + + GGI+ D F+T +P ++A+GDVA FP
Sbjct: 243 LKDGRVLEADIVIVGVGGRPQISLF-KGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFP 301
Query: 349 LKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVW 404
LK+Y+ RVEHVDHAR+SA+ KA+ +A YDYLPYFYSR F+ +
Sbjct: 302 LKLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFD-------LS 354
Query: 405 WQFFGDNVGETIEIGNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 459
WQF+GDNVGET+ G+ D PK T+WI GK+ G +E G+P+E + + +AR++P
Sbjct: 355 WQFYGDNVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKP 414
Query: 460 FVD 462
V+
Sbjct: 415 AVE 417
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Pisum sativum (taxid: 3888) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q43497|MDAR_SOLLC Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1 | Back alignment and function description |
|---|
Score = 376 bits (966), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/426 (45%), Positives = 273/426 (64%), Gaps = 24/426 (5%)
Query: 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
A ++ ++VIVGGG +AGYAAR F + G+ G L I+SKEA APYERPAL+K YLFP +
Sbjct: 1 MAEKSFKYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPALSKAYLFP--E 58
Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
ARLPGFH CVGSGGERQ PEWY EKGI +I + D+ +TL++ +G+ KY +L
Sbjct: 59 GAARLPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTL 118
Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEV 222
++ATG T + + G + Y+R++ DAD L+ +L+ K K VVVGGGYIG+E+
Sbjct: 119 VIATGTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLEL 178
Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282
+A ++ +++PE + RLFT +A YE Y+ GV +K G + +G
Sbjct: 179 SAVLRLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIK-GTVAVGFDTHPNG 237
Query: 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 342
V VKL+DG ++AD +V+G+GA+P + F + + GGI+ D F+T +P ++A+G
Sbjct: 238 EVKEVKLKDGRVLEADIVVVGVGARPLTTLF-KGQVEEEKGGIKTDAFFKTSVPDVYAVG 296
Query: 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEG 398
DVA FPLKMY+ RVEHVDH+R+SA+ +KA+ +++ YDYLPYFYSR F+
Sbjct: 297 DVATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFD--- 353
Query: 399 SPRKVWWQFFGDNVGETIEIGNFDPKIAT-----FWIDSGKLKGVLVESGSPEEFQLLPT 453
+ WQF+GDNVGET+ G+ DP AT +WI GK+ G +ESGSPEE + +
Sbjct: 354 ----LSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAK 409
Query: 454 LARSQP 459
+A+ QP
Sbjct: 410 VAKVQP 415
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Solanum lycopersicum (taxid: 4081) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LFA3|MDAR3_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 344 bits (882), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 186/426 (43%), Positives = 271/426 (63%), Gaps = 24/426 (5%)
Query: 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
A ++ +++I+GGG +AGYAA+ F G+ G L ++SKEA APYERPAL+KGYLFP +
Sbjct: 1 MAEKSFKYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--E 58
Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
ARLPGFH CVGSGGE+ PE YK+KGIE+I + D+ ++L++ +G + KY +L
Sbjct: 59 GAARLPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTL 118
Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEV 222
I+ATG T R + G + Y+R++ DAD L+ ++ +K K VVVGGGYIG+E+
Sbjct: 119 IIATGSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLEL 178
Query: 223 AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282
+A LD T++FPE + RLFT +A YE Y GVK +K G A +G
Sbjct: 179 SAVLRINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIK-GTVASGFTAQPNG 237
Query: 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 342
V V+L+DG T++AD +++G+GAKP S F + + GGI+ D F+T +P ++A+G
Sbjct: 238 EVKEVQLKDGRTLEADIVIVGVGAKPLTSLF-KGQVEEDKGGIKTDAFFKTSVPDVYAVG 296
Query: 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEG 398
DVA FPLKMY RVEHVDH+R+SA+ +KA+ +A+ YDYLP+FYSR F+
Sbjct: 297 DVATFPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFD--- 353
Query: 399 SPRKVWWQFFGDNVGETIEIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPT 453
+ WQF+GDNVG+++ G N P+ +W+ GK+ G +E GS +E + L
Sbjct: 354 ----LSWQFYGDNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAK 409
Query: 454 LARSQP 459
+A+++P
Sbjct: 410 VAKARP 415
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q42711|MDARS_CUCSA Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 198/434 (45%), Positives = 278/434 (64%), Gaps = 26/434 (5%)
Query: 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
A+E ++VI+GGG AAGYAAR FV+ G+ G L I+SKEA APYERPAL+K YLFP +
Sbjct: 1 MADETFKYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFP--E 58
Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
PARLPGFH CVGSGGER P+WYKEKGIE+I + D+ + L + GK+ Y +L
Sbjct: 59 SPARLPGFHVCVGSGGERLLPDWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTL 118
Query: 167 IVATGCTASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKK---VVVVGGGYIGME 221
I+ATG T + + G + Y+R++ DAD L+ ++ KAK+ VVVVGGGYIG+E
Sbjct: 119 IIATGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAI-KAKENGKVVVVGGGYIGLE 177
Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD 281
+ AA D ++++PE + RLFTP +A YE Y Q G+ +K G ++
Sbjct: 178 LGAALRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIK-GTVAVGFTVDTN 236
Query: 282 GRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAI 341
G V VKL+DG ++AD +V+G+GA+P S F + + GGI+ D F+T +P ++A+
Sbjct: 237 GEVKEVKLKDGRVLEADIVVVGVGARPLTSLF-KGQIVEEKGGIKTDEFFKTSVPDVYAV 295
Query: 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYE 397
GDVA FPLK+Y+ RVEHVDH+R+SA+ +KA+ +++ YDYLPYFYSR F+
Sbjct: 296 GDVATFPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFD-- 353
Query: 398 GSPRKVWWQFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLP 452
+ WQF+GDNVG+ + G+ P K ++WI GK+ G +ESGSPEE + +
Sbjct: 354 -----LSWQFYGDNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIA 408
Query: 453 TLARSQPFVDKAKL 466
+AR QP V+ + L
Sbjct: 409 KVARIQPSVESSDL 422
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Cucumis sativus (taxid: 3659) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q93WJ8|MDAR4_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 340 bits (871), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 175/408 (42%), Positives = 251/408 (61%), Gaps = 24/408 (5%)
Query: 68 RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
R F G+ G L I+S+E PYERPAL+KGY+ +K A LP F+ G GGERQ P
Sbjct: 23 REFFNQGVKPGELAIISREQVPPYERPALSKGYIHLENK--ATLPNFYVAAGIGGERQFP 80
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYL 185
+WYKEKGIE+I + D+ +TL++ +G++ KY +L+ ATG + R + G
Sbjct: 81 QWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGSSVIRLSDFGVPGADA 140
Query: 186 PGVHYIRDVADADALISSLEKAKK--VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
+ Y+R++ DAD L ++E +K VVVGGGYIG+E+ AA LD T+++PE +
Sbjct: 141 KNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKANNLDVTMVYPEPWCM 200
Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303
RLFT +A YE Y G+ VK G S+G V VKL+DG T++AD +++G
Sbjct: 201 PRLFTAGIASFYEGYYANKGINIVK-GTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVG 259
Query: 304 IGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 363
+G +P +S F + + GG++ DG F+T +P ++AIGDVA FP+K+Y+ RVEHVDH
Sbjct: 260 VGGRPIISLF-KDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDH 318
Query: 364 ARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIG 419
AR+SA+ +KA+ +A+ YDYLPYFYSR F+ + WQF+GDNVGE++ G
Sbjct: 319 ARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFD-------LSWQFYGDNVGESVLFG 371
Query: 420 NFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 462
+ D PK ++WI K+ G +E GSPEE + LAR+QP V+
Sbjct: 372 DNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVE 419
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9LK94|MDAR2_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (869), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 255/399 (63%), Gaps = 18/399 (4%)
Query: 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129
F G++DG LCI+S+E APYERPAL+KG+L P + PARLP FHTCVG+ E+ TP+W
Sbjct: 23 FTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPSFHTCVGANDEKLTPKW 80
Query: 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KIGGYLPG 187
YK+ GIE++ V S+D+ ++TL++++G+ + Y LI+ATG A + E G
Sbjct: 81 YKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGARALKLEEFGVEGSDAEN 140
Query: 188 VHYIRDVADADALISSLEKAK--KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245
V Y+RD+ADA+ L + ++ + VV+GGGYIGME AA+ V K++ T++FPE H + R
Sbjct: 141 VCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVINKINVTMVFPEAHCMAR 200
Query: 246 LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305
LFTP +A YE Y+ GVKF+K G + + E S+ +V AV L+DGS + AD +V+GIG
Sbjct: 201 LFTPKIASLYEDYYRAKGVKFIK-GTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIG 259
Query: 306 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 365
+P S FE L GGI+V+ + ++ ++AIGDVA FP+K++ R+EHVD AR
Sbjct: 260 IRPNTSLFEG-QLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSAR 318
Query: 366 QSAQHCIKALLS-AQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-- 422
+SA+H + A++ +T +DYLP+FYSRVF + WQF+GD G+ + G ++
Sbjct: 319 KSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFYGDPTGDVVHFGEYEDG 371
Query: 423 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 461
+W+ G L G +E G+ EE++ + + +P V
Sbjct: 372 KSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|Q9SR59|MDAR1_ARATH Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 319 bits (817), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 167/410 (40%), Positives = 248/410 (60%), Gaps = 27/410 (6%)
Query: 68 RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127
R F G+ G L I+SKE P+ERP LTK Y+ L+ P L + C G+G +Q P
Sbjct: 23 REFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LANIYVCAGTGEAKQYP 80
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GY 184
WYKEKGI++I + D+ +TL+++ GK+ KY +L++ATG T R E IG
Sbjct: 81 NWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGSTNIRLSE-IGVQEAD 139
Query: 185 LPGVHYIRDVADADALISSLE---KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
+ + Y+R++ D+D L ++E + K V++GGG++G+E+++A + T++FPE
Sbjct: 140 VKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSALRANNHEVTMVFPEPW 199
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301
L+ R FT +A YE Y G+K +K G SDG V VKLEDG T++A+ +V
Sbjct: 200 LVHRFFTAEIASFYESYYANKGIKIIK-GTVATGFSTNSDGEVTEVKLEDGRTLEANIVV 258
Query: 302 IGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 361
G+GA+P S F + L GGI+ DG F+T +P ++A+GDVA FP+KMY T RVEH
Sbjct: 259 AGVGARPATSLF-KGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHA 317
Query: 362 DHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 417
D+AR+SA +KA+ + + YDYLPYFYSR F K+ W+F+G+NVGE++
Sbjct: 318 DNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------KLSWEFYGENVGESVL 370
Query: 418 IGNFD-----PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 462
G+ D PK T+W+ GK+ GV +E G+ EE + + +AR+QP V+
Sbjct: 371 FGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVE 420
|
Catalyzes the conversion of monodehydroascorbate to ascorbate, oxidizing NADH in the process. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 6 EC: . EC: 5 EC: . EC: 4 |
| >sp|P43494|THCD_RHOER Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2 | Back alignment and function description |
|---|
Score = 162 bits (410), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 169/344 (49%), Gaps = 22/344 (6%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLF--PLDKKPARL 111
VI+G G A AA + HG + G + +V E PY+RP L+K YL P + A
Sbjct: 3 IVIIGSGQAGFEAAVSLRSHGFS-GTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLALR 61
Query: 112 PGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 171
P +++ + I + PV ID + Q + ++Y LI+ATG
Sbjct: 62 PA--------------QYFDDHRITLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATG 107
Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
P G LPGVHY+R +A++L SS+ +VV+G G+IG+EVAAAA L
Sbjct: 108 ARNRLLPVP-GANLPGVHYLRTAGEAESLTSSMASCSSLVVIGAGFIGLEVAAAARKKGL 166
Query: 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED 291
D T++ + + R + ++ + + ++GV ++ +K + A +DGR A V
Sbjct: 167 DVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHM-RLSTGVKTINA-ADGRAAGVTTNS 224
Query: 292 GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 351
G I AD +V+GIG P + GL GI VD RT I AIGD AA+P+
Sbjct: 225 GDVIHADAVVVGIGVVPNIELAALTGLPVD-NGIVVDEYLRTPDENISAIGDCAAYPIPG 283
Query: 352 YDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 395
R+E V +A A+ C+ A L+ + Y +P+F+S +E
Sbjct: 284 KAGLVRLESVQNAVDQAR-CLAAQLTGTSTHYRSVPWFWSEQYE 326
|
The degradation of the thiocarbamate herbicide EPTC by cytochrome CYP116 (thcB) requires the participation of a flavoprotein, rhodocoxin reductase, and an iron-sulfur protein, rhodocoxin, to mediate the transfer of electrons from NADH to P450 for oxygen activation. Rhodococcus erythropolis (taxid: 1833) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: - |
| >sp|D5IGG6|FDR_SPHSX Ferredoxin--NAD(P)(+) reductase fdr OS=Sphingomonas sp. GN=fdr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 117/393 (29%), Positives = 183/393 (46%), Gaps = 33/393 (8%)
Query: 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK 106
+ + + VIVG G+ A ++G A G + I+ E PYERP L+K YL
Sbjct: 1 MTDTHYDVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYL----- 54
Query: 107 KPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSL 166
A GF + + ++ ++ I M V +D ++ + G+ + YG L
Sbjct: 55 --AAEKGFERIL-----IRPASFWNDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGDL 107
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
+ G +A R + G L GVHY+R AD DAL + L KVV++GGGYIG+E AA
Sbjct: 108 VWCAGGSARRL-DCTGHDLGGVHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVM 166
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF---VKVGASIKNLEAGSDGR 283
+ + T+I + +L R+ L++ +E+ ++ GV KVG + G DGR
Sbjct: 167 AKFGKNVTLIEALDRVLARVAGEPLSRFFEEKHRSRGVDVRLRTKVGCLL-----GQDGR 221
Query: 284 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 343
V V+L D I AD +++GIG P +SP G +S G+ VD RT +P ++A+GD
Sbjct: 222 VTHVELNDADPIPADLVIVGIGIIPAISPLVVAGAKAS-NGLLVDASGRTSIPHVYALGD 280
Query: 344 VAAF--PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR 401
AA D R+E V +A A + + Y +P+F+S ++
Sbjct: 281 CAAHVNSFAPNDIPIRLESVQNANDQAVVVARTICGTAAQ-YHAVPWFWSSQYD------ 333
Query: 402 KVWWQFFGDNVGETIEIGNFDPKIATFWIDSGK 434
+ Q G G DP +F + G+
Sbjct: 334 -IRLQTVGLTAGYDQTFVRGDPATGSFTVVYGR 365
|
Part of the multicomponent carbazole 1,9a-dioxygenase (CARDO), that converts carbazole (CAR) into 2-aminobiphenyl-2,3-diol. Sphingomonas sp (taxid: 28214) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 489 | ||||||
| 359474156 | 497 | PREDICTED: monodehydroascorbate reductas | 0.997 | 0.981 | 0.835 | 0.0 | |
| 297742237 | 490 | unnamed protein product [Vitis vinifera] | 0.997 | 0.995 | 0.835 | 0.0 | |
| 147834040 | 889 | hypothetical protein VITISV_021486 [Viti | 0.997 | 0.548 | 0.813 | 0.0 | |
| 224058437 | 497 | predicted protein [Populus trichocarpa] | 0.985 | 0.969 | 0.827 | 0.0 | |
| 194716776 | 486 | monodehydroascorbate reductase [Picrorhi | 0.981 | 0.987 | 0.814 | 0.0 | |
| 255537579 | 493 | monodehydroascorbate reductase, putative | 0.981 | 0.973 | 0.843 | 0.0 | |
| 350536875 | 482 | monodehydroascorbate reductase [Solanum | 0.985 | 1.0 | 0.815 | 0.0 | |
| 110265126 | 482 | chloroplast monodehydroascorbate reducta | 0.985 | 1.0 | 0.813 | 0.0 | |
| 46093473 | 486 | monodehydroascorbate reductase [Brassica | 0.981 | 0.987 | 0.806 | 0.0 | |
| 30696924 | 493 | Monodehydroascorbate reductase [Arabidop | 0.981 | 0.973 | 0.800 | 0.0 |
| >gi|359474156|ref|XP_002278648.2| PREDICTED: monodehydroascorbate reductase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2161), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/491 (83%), Positives = 451/491 (91%), Gaps = 3/491 (0%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
MAS+SNSL KHG+SLWCPQ SL+R R S+ + R + V +FANENREFVIVG
Sbjct: 8 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 67
Query: 59 GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 68 GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 127
Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 128 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 187
Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 188 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 247
Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDAD 298
E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVK GASIKN+EAGSDG V AVKLE+GSTI+AD
Sbjct: 248 EDHLLQRLFTPTLARRYEEFYQENGVKFVK-GASIKNIEAGSDGHVTAVKLENGSTIEAD 306
Query: 299 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358
TI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARV
Sbjct: 307 TIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARV 366
Query: 359 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 418
EHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EI
Sbjct: 367 EHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEI 426
Query: 419 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 478
GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD KLQ+ASSVEEALE+
Sbjct: 427 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALEL 486
Query: 479 ARAALPVEAAV 489
A A + AAV
Sbjct: 487 AHAYVQAGAAV 497
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742237|emb|CBI34386.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2158), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/491 (83%), Positives = 451/491 (91%), Gaps = 3/491 (0%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
MAS+SNSL KHG+SLWCPQ SL+R R S+ + R + V +FANENREFVIVG
Sbjct: 1 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 60
Query: 59 GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 61 GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 120
Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR P
Sbjct: 121 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRLP 180
Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAAA GWKLDTTIIFP
Sbjct: 181 DKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAAAAGWKLDTTIIFP 240
Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDAD 298
E+HLLQRLFTP+LA+RYE+ YQ+NGVKFVK GASIKN+EAGSDG V AVKLE+GSTI+AD
Sbjct: 241 EDHLLQRLFTPTLARRYEEFYQENGVKFVK-GASIKNIEAGSDGHVTAVKLENGSTIEAD 299
Query: 299 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358
TI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R ARV
Sbjct: 300 TIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVAAFPLKMYNRIARV 359
Query: 359 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 418
EHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGET+EI
Sbjct: 360 EHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGETVEI 419
Query: 419 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 478
GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD KLQ+ASSVEEALE+
Sbjct: 420 GNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPHVDMTKLQKASSVEEALEL 479
Query: 479 ARAALPVEAAV 489
A A + AAV
Sbjct: 480 AHAYVQAGAAV 490
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147834040|emb|CAN64338.1| hypothetical protein VITISV_021486 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/504 (81%), Positives = 451/504 (89%), Gaps = 16/504 (3%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSA--KNFQRRGFVVAYSSFANENREFVIVG 58
MAS+SNSL KHG+SLWCPQ SL+R R S+ + R + V +FANENREFVIVG
Sbjct: 387 MASISNSLPLKHGISLWCPQHASLNRTRLPSSFGSSASARRYGVVSCAFANENREFVIVG 446
Query: 59 GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
GGNAAGYAARTFVEHGMADG+LCIVSKEA+APYERPALTKGYLFPLDKKPARLPGFHTCV
Sbjct: 447 GGNAAGYAARTFVEHGMADGKLCIVSKEAFAPYERPALTKGYLFPLDKKPARLPGFHTCV 506
Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-- 176
GSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQTL+TNSGKLLKYGSLI+ATGCTASR
Sbjct: 507 GSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTLMTNSGKLLKYGSLIIATGCTASRRS 566
Query: 177 -----------FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
P+KIGG LPGVHYIRDVADAD+LISSLEKA+KVV+VGGGYIGMEVAAA
Sbjct: 567 EDEFFSSPDFRLPDKIGGNLPGVHYIRDVADADSLISSLEKARKVVIVGGGYIGMEVAAA 626
Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285
A GWKLDTTIIFPE+HLLQRLFTP+LA+RYE+ YQ+NGVKFVK GASIKN+EAGSDG V
Sbjct: 627 AAGWKLDTTIIFPEDHLLQRLFTPTLARRYEEFYQENGVKFVK-GASIKNIEAGSDGHVT 685
Query: 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 345
AVKLE+GSTI+ADTI+IGIGAKP VSPFERVG+N++VGGIQVDGQFRT +PGIFAIGDVA
Sbjct: 686 AVKLENGSTIEADTIIIGIGAKPAVSPFERVGINTTVGGIQVDGQFRTSVPGIFAIGDVA 745
Query: 346 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWW 405
AFPLKMY+R ARVEHVDHAR+SAQHCI ALL+A+TH YDYLPYFYSRVFEYEGSPRK+WW
Sbjct: 746 AFPLKMYNRIARVEHVDHARRSAQHCINALLTAKTHLYDYLPYFYSRVFEYEGSPRKIWW 805
Query: 406 QFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAK 465
QFFGDNVGET+EIGNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD K
Sbjct: 806 QFFGDNVGETVEIGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPQVDMTK 865
Query: 466 LQQASSVEEALEIARAALPVEAAV 489
LQ+ASSVEEALE+A A + AAV
Sbjct: 866 LQKASSVEEALELAHATVQAGAAV 889
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224058437|ref|XP_002299509.1| predicted protein [Populus trichocarpa] gi|118488230|gb|ABK95934.1| unknown [Populus trichocarpa] gi|222846767|gb|EEE84314.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 824 bits (2128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/492 (82%), Positives = 447/492 (90%), Gaps = 10/492 (2%)
Query: 5 SNSLSFKHGLSLWCPQSPSLHRIRHSSA------KNFQRRGFVVAYSS-FANENREFVIV 57
SN +SFKHGLSLWCPQS LHR SS K F R V A SS FANENRE+VIV
Sbjct: 9 SNPMSFKHGLSLWCPQSSPLHRTLQSSPSSSIGFKTFFRNHVVAASSSSFANENREYVIV 68
Query: 58 GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
GGGNAAGYAAR+FVEHGMADG+LCIV++EAYAPYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 69 GGGNAAGYAARSFVEHGMADGKLCIVTREAYAPYERPALTKAYLFPLDKKPARLPGFHTC 128
Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
VGSGGERQTP+WYKEKGIEM+Y+DPVT IDIEKQT T SGKLLKYG+LIVATGC+ASRF
Sbjct: 129 VGSGGERQTPDWYKEKGIEMLYEDPVTGIDIEKQTATTISGKLLKYGTLIVATGCSASRF 188
Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
PEKIGG LPGVHYIRDVADAD+LISSLEKA K+V+VGGGYIGMEVAAAAV WKLDTTIIF
Sbjct: 189 PEKIGGNLPGVHYIRDVADADSLISSLEKAHKLVIVGGGYIGMEVAAAAVAWKLDTTIIF 248
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDA 297
PENHL+QRLFTPSLAQ+YE+LYQ+NGVKF+K GASIKNLEA SDG VAA+KLE+GSTI+A
Sbjct: 249 PENHLMQRLFTPSLAQKYEELYQENGVKFIK-GASIKNLEASSDGHVAAIKLENGSTIEA 307
Query: 298 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 357
D ++IGIGAKP V PFER+GLN+SVGGIQVDGQFRT +PGIFAIGDVAAFPLKMY+R AR
Sbjct: 308 DMVIIGIGAKPAVGPFERLGLNNSVGGIQVDGQFRTGIPGIFAIGDVAAFPLKMYNRMAR 367
Query: 358 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 417
VEHVDHAR+SAQHC+K+LL+A T +YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI+
Sbjct: 368 VEHVDHARRSAQHCVKSLLTAHTSSYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIQ 427
Query: 418 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 477
+GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LA+SQP VDK+KLQ ASSVEEALE
Sbjct: 428 VGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPELAKSQPIVDKSKLQSASSVEEALE 487
Query: 478 IARAALPVEAAV 489
IAR +L +AAV
Sbjct: 488 IARTSL--QAAV 497
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|194716776|gb|ACF93237.1| monodehydroascorbate reductase [Picrorhiza kurrooa] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/485 (81%), Positives = 440/485 (90%), Gaps = 5/485 (1%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHS---SAKNFQRRGFVVAYSSFANENREFVIV 57
M+S+SN+LSFKHGLSLWCP S S+++I S+K F+RR F V SSFANENREFVIV
Sbjct: 1 MSSISNALSFKHGLSLWCPHSTSVNQISQPCSVSSKIFRRR-FSVLASSFANENREFVIV 59
Query: 58 GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC 117
GGGNA+GYAARTFVEHGMADG+LCIVSKEAY PYERPALTK YLFPLDKKPARLPGFHTC
Sbjct: 60 GGGNASGYAARTFVEHGMADGKLCIVSKEAYVPYERPALTKAYLFPLDKKPARLPGFHTC 119
Query: 118 VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF 177
VG+GGERQTP+WYKEKGIEM+++DPV ID EKQTL TNSGKLLKYGSLI+ATGCTASRF
Sbjct: 120 VGAGGERQTPDWYKEKGIEMLHEDPVADIDTEKQTLTTNSGKLLKYGSLIIATGCTASRF 179
Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
P+KIGG LPGVHY+RDVADA++LISSLEK+KKVVVVGGGYIGMEVAAA V WKLDTTIIF
Sbjct: 180 PDKIGGNLPGVHYVRDVADANSLISSLEKSKKVVVVGGGYIGMEVAAATVAWKLDTTIIF 239
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDA 297
PE+HL+ RLFTPSLAQ+YE LY+ GV FVK GASIK+LEAGSDGRV+ VKLE+GS I+A
Sbjct: 240 PEDHLMTRLFTPSLAQKYEDLYKDYGVNFVK-GASIKSLEAGSDGRVSGVKLENGSIIEA 298
Query: 298 DTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR 357
DT+VIGIG KP V PFE VGLN +VGGIQVDG FRT +PGIFAIGDVAAFPLK+YDR R
Sbjct: 299 DTVVIGIGGKPAVGPFESVGLNKTVGGIQVDGLFRTSIPGIFAIGDVAAFPLKIYDRITR 358
Query: 358 VEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIE 417
VEHVDHAR+SAQHC+K+LL+A T TYDYLP FYSRVFE+EGSPRKVWWQFFGDNVGET+E
Sbjct: 359 VEHVDHARRSAQHCVKSLLTAHTDTYDYLPLFYSRVFEHEGSPRKVWWQFFGDNVGETVE 418
Query: 418 IGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALE 477
+GNFDPKIATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ+ASSV+EALE
Sbjct: 419 VGNFDPKIATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDVAKLQKASSVDEALE 478
Query: 478 IARAA 482
IA+A+
Sbjct: 479 IAQAS 483
|
Source: Picrorhiza kurrooa Species: Picrorhiza kurrooa Genus: Picrorhiza Family: Plantaginaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537579|ref|XP_002509856.1| monodehydroascorbate reductase, putative [Ricinus communis] gi|223549755|gb|EEF51243.1| monodehydroascorbate reductase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 811 bits (2094), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/485 (84%), Positives = 448/485 (92%), Gaps = 5/485 (1%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHSS--AKNFQRRGFVVAYSSFANENREFVIVG 58
MA++SNSL KHGLSLWCP S SL+R H+ A R +VV S+F+NENREFVIVG
Sbjct: 8 MATISNSLPLKHGLSLWCPHSSSLNRTFHTPPIAYRIVHRNYVV--SAFSNENREFVIVG 65
Query: 59 GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCV 118
GGNAAGYAARTFVEHGMADGRLCIV+KE +APYERPALTK YLFPLDKKPARLPGFHTCV
Sbjct: 66 GGNAAGYAARTFVEHGMADGRLCIVTKEPHAPYERPALTKAYLFPLDKKPARLPGFHTCV 125
Query: 119 GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP 178
GSGGERQTP+WY+EKGIEM+Y+DPVTSIDIEKQTL TNSGKLLKYG+LI+ATG TASRFP
Sbjct: 126 GSGGERQTPDWYQEKGIEMLYEDPVTSIDIEKQTLGTNSGKLLKYGTLIIATGSTASRFP 185
Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
EKIGG LPGVHYIRDVADAD+LISSL+KA+KVVVVGGGYIGMEVAAAAVGW LDTTIIFP
Sbjct: 186 EKIGGSLPGVHYIRDVADADSLISSLDKARKVVVVGGGYIGMEVAAAAVGWNLDTTIIFP 245
Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDAD 298
E HLLQRLFTPSLAQRYE+LY++NGVKF+K GASIKNLEAGSDG VA VKLEDGS I+AD
Sbjct: 246 EKHLLQRLFTPSLAQRYEELYKENGVKFLK-GASIKNLEAGSDGHVATVKLEDGSIIEAD 304
Query: 299 TIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358
T+VIGIGAKP VSPFE+VGLN++VGGIQVDGQFRT PGIFAIGDVAAFPLKMY+RTARV
Sbjct: 305 TVVIGIGAKPAVSPFEQVGLNATVGGIQVDGQFRTNKPGIFAIGDVAAFPLKMYNRTARV 364
Query: 359 EHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEI 418
EHVDHAR+SA+HC+KALLSAQT TYDYLPYFYSRVFEYEGSPRK+WWQFFGDNVGE +EI
Sbjct: 365 EHVDHARRSARHCVKALLSAQTSTYDYLPYFYSRVFEYEGSPRKIWWQFFGDNVGEAVEI 424
Query: 419 GNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 478
GNFDPKIATFWIDSGKLKG+L+ESGS EEFQLLP LARSQP VDK+KL +ASSVEEALEI
Sbjct: 425 GNFDPKIATFWIDSGKLKGILLESGSAEEFQLLPKLARSQPSVDKSKLLKASSVEEALEI 484
Query: 479 ARAAL 483
A+A+L
Sbjct: 485 AQASL 489
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350536875|ref|NP_001234013.1| monodehydroascorbate reductase [Solanum lycopersicum] gi|195542238|gb|AAZ66138.2| monodehydroascorbate reductase [Solanum lycopersicum] gi|299507810|gb|ADJ21816.1| monodehydroascorbate reductase [Solanum lycopersicum var. cerasiforme] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/483 (81%), Positives = 436/483 (90%), Gaps = 1/483 (0%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
MA+ N++S K GLSLWCPQS L+RI S + R VA SSF NENRE+V+VGGG
Sbjct: 1 MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60
Query: 61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61 NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120
Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180
Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240
Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300
HLL RLFTPSLAQ+YEQLYQ +GVKFVK GA IK+LE+G D RV AVKLEDGS+I+ DT+
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVK-GAKIKHLESGPDSRVTAVKLEDGSSIETDTV 299
Query: 301 VIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 360
VIGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEH
Sbjct: 300 VIGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEH 359
Query: 361 VDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGN 420
VDHAR+SAQHCIK+LL+A THTYDYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GN
Sbjct: 360 VDHARKSAQHCIKSLLTAHTHTYDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGN 419
Query: 421 FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIAR 480
FDPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+
Sbjct: 420 FDPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQ 479
Query: 481 AAL 483
A+L
Sbjct: 480 ASL 482
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|110265126|gb|ABG57052.1| chloroplast monodehydroascorbate reductase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 803 bits (2074), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/483 (81%), Positives = 436/483 (90%), Gaps = 1/483 (0%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHRIRHSSAKNFQRRGFVVAYSSFANENREFVIVGGG 60
MA+ N++S K GLSLWCPQS L+RI S + R VA SSF NENRE+V+VGGG
Sbjct: 1 MATTPNTMSIKQGLSLWCPQSAVLNRISRVSVPSRSFRRSFVAASSFDNENREYVVVGGG 60
Query: 61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS 120
NAAGYAARTFVEHG A+G+LCIV+KE YAPYERPALTK YLFPLDKKPARLPGFHTCVG+
Sbjct: 61 NAAGYAARTFVEHGQANGKLCIVTKEPYAPYERPALTKAYLFPLDKKPARLPGFHTCVGA 120
Query: 121 GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180
GGERQTP+WYKE+GIEM+Y+DPVT IDIEKQTL TNSGKLLKYG+LI+ATGCTASRFPEK
Sbjct: 121 GGERQTPDWYKEQGIEMLYEDPVTGIDIEKQTLTTNSGKLLKYGTLIIATGCTASRFPEK 180
Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
IGG LPGVHYIRDVADAD+LISSL KAKK+VVVGGGYIGMEVAAAAV WKLDTTIIFPE
Sbjct: 181 IGGNLPGVHYIRDVADADSLISSLGKAKKLVVVGGGYIGMEVAAAAVAWKLDTTIIFPEE 240
Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300
HLL RLFTPSLAQ+YEQLYQ +GVKFVK GA IK+LE+G D RV AVKLEDGS+I+ DT+
Sbjct: 241 HLLSRLFTPSLAQKYEQLYQDSGVKFVK-GAKIKHLESGPDSRVTAVKLEDGSSIETDTV 299
Query: 301 VIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 360
VIGIGAKP VSPF+ VGLN++VGGI+VDGQFRT +PGIFAIGDVAAFPLK+Y+R ARVEH
Sbjct: 300 VIGIGAKPAVSPFDMVGLNNTVGGIEVDGQFRTNIPGIFAIGDVAAFPLKIYNRIARVEH 359
Query: 361 VDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGN 420
VDHAR+SAQHCIK+LL+A THT+DYLPYFYSRVFEYEGS RKVWWQFFGDNVGE +E+GN
Sbjct: 360 VDHARKSAQHCIKSLLTAHTHTHDYLPYFYSRVFEYEGSSRKVWWQFFGDNVGEAVEVGN 419
Query: 421 FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEIAR 480
FDPK+ATFWIDSGKLKGVL+ESGSPEEFQLLP LARSQP VD AKLQ ASSVEEALEIA+
Sbjct: 420 FDPKVATFWIDSGKLKGVLLESGSPEEFQLLPKLARSQPSVDIAKLQNASSVEEALEIAQ 479
Query: 481 AAL 483
A+L
Sbjct: 480 ASL 482
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|46093473|dbj|BAD14933.1| monodehydroascorbate reductase [Brassica oleracea] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/487 (80%), Positives = 428/487 (87%), Gaps = 7/487 (1%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
MA S +L K GLSLWCP SPSL R R S RG V A SFANENREFVI
Sbjct: 1 MALASTTLPAKTGLSLWCPTSPSLARRLPARFSPIGSRIASRGVVTA--SFANENREFVI 58
Query: 57 VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
+GGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 59 IGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 118
Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
CVG GGERQTP+WYKEKGIEMIY+DPVT D EKQTL TN+GK LKYGSLI+ATGCTASR
Sbjct: 119 CVGGGGERQTPDWYKEKGIEMIYEDPVTGADFEKQTLTTNTGKQLKYGSLIIATGCTASR 178
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
FP+KIGG LPGVHYIR+VADAD+LISSL K+KKVV+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 179 FPDKIGGNLPGVHYIREVADADSLISSLGKSKKVVIVGGGYIGMEVAAAAVAWNLDTTIV 238
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
FPE+ LLQRLFTPSLAQRYE+LY+QNGVKFVK GASI NLEAGSDGRV AVKL DGSTI+
Sbjct: 239 FPEDQLLQRLFTPSLAQRYEELYRQNGVKFVK-GASINNLEAGSDGRVTAVKLADGSTIE 297
Query: 297 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 356
ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT PGIFAIGDVAAFPLK+YDR
Sbjct: 298 ADTVVIGIGAKPAIGPFETLSMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMT 357
Query: 357 RVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI 416
RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGS RKVWWQF+GDNVGET+
Sbjct: 358 RVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSSRKVWWQFYGDNVGETV 417
Query: 417 EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEAL 476
E+GNFDPKIATFWIDSG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL ASSVEEA+
Sbjct: 418 EVGNFDPKIATFWIDSGRLKGVLVESGSPEEFQLLPKLARSQPIVDKAKLASASSVEEAI 477
Query: 477 EIARAAL 483
EIA+AAL
Sbjct: 478 EIAQAAL 484
|
Source: Brassica oleracea Species: Brassica oleracea Genus: Brassica Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30696924|ref|NP_849839.1| Monodehydroascorbate reductase [Arabidopsis thaliana] gi|50400853|sp|P92947.3|MDARP_ARATH RecName: Full=Monodehydroascorbate reductase, chloroplastic; Short=MDAR; Flags: Precursor gi|12325013|gb|AAG52455.1|AC010852_12 putative monodehydroascorbate reductase; 10617-7178 [Arabidopsis thaliana] gi|23397057|gb|AAN31814.1| putative monodehydroascorbate reductase [Arabidopsis thaliana] gi|332196050|gb|AEE34171.1| Monodehydroascorbate reductase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/487 (80%), Positives = 429/487 (88%), Gaps = 7/487 (1%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
MA S +L K GLSLWCP SPSL R R S R V A SFANENREFVI
Sbjct: 8 MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65
Query: 57 VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66 VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125
Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
CVG GGERQTP+WYKEKGIE+IY+DPV D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK+V+VGGGYIGMEVAAAAV W LDTTI+
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVK GASI NLEAGSDGRV+AVKL DGSTI+
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVK-GASINNLEAGSDGRVSAVKLADGSTIE 304
Query: 297 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 356
ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT PGIFAIGDVAAFPLK+YDR
Sbjct: 305 ADTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMT 364
Query: 357 RVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI 416
RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+
Sbjct: 365 RVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETV 424
Query: 417 EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEAL 476
E+GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL ASSVEEAL
Sbjct: 425 EVGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEAL 484
Query: 477 EIARAAL 483
EIA+AAL
Sbjct: 485 EIAQAAL 491
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 489 | ||||||
| TAIR|locus:2195503 | 493 | MDAR6 "monodehydroascorbate re | 0.981 | 0.973 | 0.790 | 1.4e-206 | |
| TAIR|locus:2144588 | 435 | ATMDAR2 [Arabidopsis thaliana | 0.848 | 0.954 | 0.423 | 5.1e-90 | |
| TAIR|locus:2086430 | 488 | MDAR4 "monodehydroascorbate re | 0.811 | 0.813 | 0.428 | 5.9e-89 | |
| TAIR|locus:2085176 | 466 | MDAR1 "monodehydroascorbate re | 0.787 | 0.826 | 0.425 | 1.8e-85 | |
| TAIR|locus:2100143 | 441 | MDHAR "monodehydroascorbate re | 0.840 | 0.931 | 0.404 | 5.6e-84 | |
| UNIPROTKB|P95146 | 411 | Rv1869c "Probable reductase" [ | 0.777 | 0.924 | 0.297 | 1.7e-36 | |
| TIGR_CMR|SPO_3737 | 403 | SPO_3737 "pyridine nucleotide- | 0.781 | 0.947 | 0.288 | 1.2e-35 | |
| UNIPROTKB|D5IGG6 | 414 | fdr "Ferredoxin--NAD(P)(+) red | 0.664 | 0.785 | 0.307 | 3.2e-33 | |
| UNIPROTKB|P95034 | 406 | Rv0688 "PUTATIVE FERREDOXIN RE | 0.652 | 0.785 | 0.313 | 1.1e-32 | |
| UNIPROTKB|Q9L4M8 | 385 | alkT "Rubredoxin-NAD(+) reduct | 0.629 | 0.8 | 0.311 | 3.8e-30 |
| TAIR|locus:2195503 MDAR6 "monodehydroascorbate reductase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1998 (708.4 bits), Expect = 1.4e-206, P = 1.4e-206
Identities = 385/487 (79%), Positives = 422/487 (86%)
Query: 1 MASVSNSLSFKHGLSLWCPQSPSLHR---IRHSS-AKNFQRRGFVVAYSSFANENREFVI 56
MA S +L K GLSLWCP SPSL R R S R V A SFANENREFVI
Sbjct: 8 MALASTTLPTKSGLSLWCPSSPSLARRFPARFSPIGSRIASRSLVTA--SFANENREFVI 65
Query: 57 VGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT 116
VGGGNAAGYAARTFVE+GMADGRLCIV+KEAYAPYERPALTK YLFP +KKPARLPGFHT
Sbjct: 66 VGGGNAAGYAARTFVENGMADGRLCIVTKEAYAPYERPALTKAYLFPPEKKPARLPGFHT 125
Query: 117 CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176
CVG GGERQTP+WYKEKGIE+IY+DPV D EKQTL T++GK LKYGSLI+ATGCTASR
Sbjct: 126 CVGGGGERQTPDWYKEKGIEVIYEDPVAGADFEKQTLTTDAGKQLKYGSLIIATGCTASR 185
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTTII 236
FP+KIGG+LPGVHYIR+VADAD+LI+SL KAKK YIGMEVAAAAV W LDTTI+
Sbjct: 186 FPDKIGGHLPGVHYIREVADADSLIASLGKAKKIVIVGGGYIGMEVAAAAVAWNLDTTIV 245
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
FPE+ LLQRLFTPSLAQ+YE+LY+QNGVKFVK GASI NLEAGSDGRV+AVKL DGSTI+
Sbjct: 246 FPEDQLLQRLFTPSLAQKYEELYRQNGVKFVK-GASINNLEAGSDGRVSAVKLADGSTIE 304
Query: 297 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 356
ADT+VIGIGAKP + PFE + +N S+GGIQVDG FRT PGIFAIGDVAAFPLK+YDR
Sbjct: 305 ADTVVIGIGAKPAIGPFETLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMT 364
Query: 357 RVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETI 416
RVEHVDHAR+SAQHC+K+LL+A T TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET+
Sbjct: 365 RVEHVDHARRSAQHCVKSLLTAHTDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETV 424
Query: 417 EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKLQQASSVEEAL 476
E+GNFDPKIATFWI+SG+LKGVLVESGSPEEFQLLP LARSQP VDKAKL ASSVEEAL
Sbjct: 425 EVGNFDPKIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEAL 484
Query: 477 EIARAAL 483
EIA+AAL
Sbjct: 485 EIAQAAL 491
|
|
| TAIR|locus:2144588 ATMDAR2 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 898 (321.2 bits), Expect = 5.1e-90, P = 5.1e-90
Identities = 186/439 (42%), Positives = 265/439 (60%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
++VIVGGG AAGYAAR F G+ G L I+S+E PYERPAL+KGY+ L+ K A LP
Sbjct: 8 KYVIVGGGVAAGYAAREFFNQGVKPGELAIISREQVPPYERPALSKGYIH-LENK-ATLP 65
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
F+ G GGERQ P+WYKEKGIE+I + D+ +TL++ +G++ KY +L+ ATG
Sbjct: 66 NFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAATGS 125
Query: 173 TASRFPE--KIGGYLPGVHYIRDVADADALISSLE-KAK-KXXXXXXXYIGMEVAAAAVG 228
+ R + G + Y+R++ DAD L ++E K K K YIG+E+ AA
Sbjct: 126 SVIRLSDFGVPGADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGAALKA 185
Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK 288
LD T+++PE + RLFT +A YE Y G+ VK G S+G V VK
Sbjct: 186 NNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVK-GTVASGFTTNSNGEVTEVK 244
Query: 289 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
L+DG T++AD +++G+G +P +S F+ + GG++ DG F+T +P ++AIGDVA FP
Sbjct: 245 LKDGRTLEADIVIVGVGGRPIISLFKDQ-VEEEKGGLKTDGFFKTSLPDVYAIGDVATFP 303
Query: 349 LKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRKVW 404
+K+Y+ RVEHVDHAR+SA+ +KA+ +A+ YDYLPYFYSR F+
Sbjct: 304 MKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLS------- 356
Query: 405 WQFFGDNVGETIEIGNFDP-----KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 459
WQF+GDNVGE++ G+ DP K ++WI K+ G +E GSPEE + LAR+QP
Sbjct: 357 WQFYGDNVGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQP 416
Query: 460 FVDKAKLQQASSVEEALEI 478
V+ ++ + A I
Sbjct: 417 SVESLEVLSKEGLSFATNI 435
|
|
| TAIR|locus:2086430 MDAR4 "monodehydroascorbate reductase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
Identities = 178/415 (42%), Positives = 263/415 (63%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
+VI+GGG AAGYAA F G++DG LCI+S+E APYERPAL+KG+L P + PARLP
Sbjct: 7 YVILGGGVAAGYAALEFTRRGVSDGELCIISEEPVAPYERPALSKGFLLP--EAPARLPS 64
Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
FHTCVG+ E+ TP+WYK+ GIE++ V S+D+ ++TL++++G+ + Y LI+ATG
Sbjct: 65 FHTCVGANDEKLTPKWYKDHGIELVLGTRVKSVDVRRKTLLSSTGETISYKFLIIATGAR 124
Query: 174 ASRFPE--KIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXX--YIGMEVAAAAVGW 229
A + E G V Y+RD+ADA+ L + ++ + YIGME AA+ V
Sbjct: 125 ALKLEEFGVEGSDAENVCYLRDLADANRLATVIQSSSNGNAVVIGGGYIGMECAASLVIN 184
Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289
K++ T++FPE H + RLFTP +A YE Y+ GVKF+K G + + E S+ +V AV L
Sbjct: 185 KINVTMVFPEAHCMARLFTPKIASLYEDYYRAKGVKFIK-GTVLTSFEFDSNKKVTAVNL 243
Query: 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349
+DGS + AD +V+GIG +P S FE L GGI+V+ + ++ ++AIGDVA FP+
Sbjct: 244 KDGSHLPADLVVVGIGIRPNTSLFEGQ-LTIEKGGIKVNSRMQSSDSSVYAIGDVATFPV 302
Query: 350 KMYDRTARVEHVDHARQSAQHCIKALLSA-QTHTYDYLPYFYSRVFEYEGSPRKVWWQFF 408
K++ R+EHVD AR+SA+H + A++ +T +DYLP+FYSRVF + WQF+
Sbjct: 303 KLFGEMRRLEHVDSARKSARHAVSAIMDPIKTGDFDYLPFFYSRVFAFS-------WQFY 355
Query: 409 GDNVGETIEIGNF-DPK-IATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFV 461
GD G+ + G + D K +W+ G L G +E G+ EE++ + + +P V
Sbjct: 356 GDPTGDVVHFGEYEDGKSFGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAV 410
|
|
| TAIR|locus:2085176 MDAR1 "monodehydroascorbate reductase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 174/409 (42%), Positives = 251/409 (61%)
Query: 64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGE 123
GYAA+ F G+ G L ++SKEA APYERPAL+KGYLFP + ARLPGFH CVGSGGE
Sbjct: 50 GYAAKEFANQGVQPGELAVISKEAVAPYERPALSKGYLFP--EGAARLPGFHCCVGSGGE 107
Query: 124 RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--KI 181
+ PE YK+KGIE+I + D+ ++L++ +G + KY +LI+ATG T R +
Sbjct: 108 KLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIATGSTVLRLTDFGVK 167
Query: 182 GGYLPGVHYIRDVADADALISSLEKAK--KXXXXXXXYIGMEVAAAAVGWKLDTTIIFPE 239
G + Y+R++ DAD L+ +++ K K YIG+E++A LD T++FPE
Sbjct: 168 GADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVLRINNLDVTMVFPE 227
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299
+ RLFT +A YE Y GVK +K G A +G V V+L+DG T++AD
Sbjct: 228 PWCMPRLFTADIAAFYETYYTNKGVKIIK-GTVASGFTAQPNGEVKEVQLKDGRTLEADI 286
Query: 300 IVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 359
+++G+GAKP S F+ + GGI+ D F+T +P ++A+GDVA FPLKMY RVE
Sbjct: 287 VIVGVGAKPLTSLFKGQ-VEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVE 345
Query: 360 HVDHARQSAQHCIKALLSAQ----THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 415
HVDH+R+SA+ +KA+ +A+ YDYLP+FYSR F+ WQF+GDNVG++
Sbjct: 346 HVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLS-------WQFYGDNVGDS 398
Query: 416 IEIG-----NFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 459
+ G N P+ +W+ GK+ G +E GS +E + L +A+++P
Sbjct: 399 VLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARP 447
|
|
| TAIR|locus:2100143 MDHAR "monodehydroascorbate reductase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 5.6e-84, P = 5.6e-84
Identities = 179/442 (40%), Positives = 261/442 (59%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
++VI+GGG A GYAAR F G+ G L I+SKE P+ERP LTK Y+ L+ P L
Sbjct: 8 KYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYI-DLEVNPT-LA 65
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
+ C G+G +Q P WYKEKGI++I + D+ +TL+++ GK+ KY +L++ATG
Sbjct: 66 NIYVCAGTGEAKQYPNWYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIATGS 125
Query: 173 TASRFPEKIG---GYLPGVHYIRDVADADALISSLE---KAKKXXXXXXXYIGMEVAAAA 226
T R E IG + + Y+R++ D+D L ++E + K ++G+E+++A
Sbjct: 126 TNIRLSE-IGVQEADVKNIFYLREIEDSDELALAMELYVQRGKAVIIGGGFLGLEISSAL 184
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA 286
+ T++FPE L+ R FT +A YE Y G+K +K G SDG V
Sbjct: 185 RANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIK-GTVATGFSTNSDGEVTE 243
Query: 287 VKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
VKLEDG T++A+ +V G+GA+P S F+ L GGI+ DG F+T +P ++A+GDVA
Sbjct: 244 VKLEDGRTLEANIVVAGVGARPATSLFKGQ-LEEEKGGIKTDGFFKTSVPDVYALGDVAT 302
Query: 347 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT----YDYLPYFYSRVFEYEGSPRK 402
FP+KMY T RVEH D+AR+SA +KA+ + + YDYLPYFYSR F K
Sbjct: 303 FPMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFF-------K 355
Query: 403 VWWQFFGDNVGETIEIGNFDPK-----IATFWIDSGKLKGVLVESGSPEEFQLLPTLARS 457
+ W+F+G+NVGE++ G+ DPK T+W+ GK+ GV +E G+ EE + + +AR+
Sbjct: 356 LSWEFYGENVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARA 415
Query: 458 QPFVDKAKLQQASSVEEALEIA 479
QP V+ L S EE L A
Sbjct: 416 QPSVES--LDVLS--EEGLSFA 433
|
|
| UNIPROTKB|P95146 Rv1869c "Probable reductase" [Mycobacterium tuberculosis H37Rv (taxid:83332)] | Back alignment and assigned GO terms |
|---|
Score = 393 (143.4 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 122/410 (29%), Positives = 196/410 (47%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
FVIVGGG AG A + GR+ + E + PY+RP L+K +L KK L
Sbjct: 7 FVIVGGG-LAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFL--AGKKS--LSD 61
Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
F QT +WY++ +++ V+S+D T+ G ++Y L++ATG +
Sbjct: 62 FTI--------QTSDWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATG-S 112
Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
A R P G GVHY+R DA AL S L + +IG+EVAA+A +D
Sbjct: 113 APRRPPIPGSDAAGVHYLRSYNDAVALNSVLVQGSSLAVVGAGWIGLEVAASARQRGVDV 172
Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS 293
T++ L ++ + + L++ GV +++ ++ + A +DG+ +K+ DGS
Sbjct: 173 TVVETAIQPLLAALGEAVGKVFADLHRDQGVD-LRLQTQLEEITA-ADGKATGLKMRDGS 230
Query: 294 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353
T+ AD +++ +GAKP V ++ GL GG+ VD RT P I+A+GD+AA +
Sbjct: 231 TVAADAVLVAVGAKPNVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLG 290
Query: 354 RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVF----EYEG-SPRKVWWQFF 408
R EH +A + +L + Y LPY ++ + EY G +P F
Sbjct: 291 TRVRTEHWANALKQPAVAAAGMLG-RPGEYAELPYLFTDQYDLGMEYVGHAPSCDRVVFR 349
Query: 409 GDNVG-ETIEIG-NFDPKI-----ATFWIDSGKLKGVLVESGSPEEFQLL 451
G+ G E + + D ++ W +KG L+ SG+P + L
Sbjct: 350 GNVAGREFLSFWLDGDSRVLAGMNVNVWDVVDDVKG-LIRSGNPVDVDRL 398
|
|
| TIGR_CMR|SPO_3737 SPO_3737 "pyridine nucleotide-disulphide oxidoreductase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
Identities = 119/412 (28%), Positives = 189/412 (45%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
V++G G A + G +G + ++ E PY+RP L+K YL + + RL F
Sbjct: 5 VVIGAGQAGASLVARLRKDGF-EGEITLIGAEPVPPYQRPPLSKAYLLG-EMEKERL--F 60
Query: 115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
PE +Y E+ I + V++ID +T ++ G+++ Y L + TG
Sbjct: 61 ----------LRPESFYAEQNIALRLNARVSAIDPAAKT-VSLGGEVIPYDQLALTTGSE 109
Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
R P IGG L GVH +RD+AD DA+ S+ + + YIG+E AA +
Sbjct: 110 PRRLPAAIGGDLAGVHVVRDLADIDAMAPSVTEGARALIVGGGYIGLEAAAVCAKRGVQV 169
Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS 293
T++ + +LQR+ P + + L+ +GV ++ G + L G+ GRV L DGS
Sbjct: 170 TLVEMADRILQRVAAPETSAYFRALHTGHGVD-IREGVGLTRL-IGAQGRVTGAVLTDGS 227
Query: 294 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353
+ D +V+G+G P + E GL GI+ D Q RT P I+A GD A+FP K
Sbjct: 228 ELPVDLVVVGVGIAPATALAEAAGLVLE-NGIRTDAQGRTSDPSIWAAGDCASFPYK--G 284
Query: 354 RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 413
R+E V +A A+ + + A Y P+F+S +Y+ V Q G N G
Sbjct: 285 GRIRLESVPNAIDQAETVAQNMQGAGKD-YVAQPWFWSD--QYD-----VKLQIAGLNTG 336
Query: 414 -ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 464
+ + + + +FW +G + P + + L S D A
Sbjct: 337 YDRVVTRPGEGQTVSFWYYTGDQLVAVDAMNDPRAYMVGKRLIDSGKTADPA 388
|
|
| UNIPROTKB|D5IGG6 fdr "Ferredoxin--NAD(P)(+) reductase fdr" [Sphingomonas sp. (taxid:28214)] | Back alignment and assigned GO terms |
|---|
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 106/345 (30%), Positives = 163/345 (47%)
Query: 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP 112
+ VIVG G+ A ++G A G + I+ E PYERP L+K YL A
Sbjct: 7 DVVIVGAGHGGAQTAIALRQNGFA-GTIAIIGAEPDLPYERPPLSKEYL-------AAEK 58
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
GF + R W ++ I M V +D ++ + G+ + YG L+ G
Sbjct: 59 GFERIL----IRPASFW-NDRHIAMHLGCAVERVDPTQRLVFLADGRSMGYGDLVWCAGG 113
Query: 173 TASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLD 232
+A R + G L GVHY+R AD DAL + L K YIG+E AA + +
Sbjct: 114 SARRL-DCTGHDLGGVHYVRTRADTDALAAELPGVSKVVIIGGGYIGLEAAAVMAKFGKN 172
Query: 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG 292
T+I + +L R+ L++ +E+ ++ GV V++ + L G DGRV V+L D
Sbjct: 173 VTLIEALDRVLARVAGEPLSRFFEEKHRSRGVD-VRLRTKVGCL-LGQDGRVTHVELNDA 230
Query: 293 STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF--PLK 350
I AD +++GIG P +SP G +S G+ VD RT +P ++A+GD AA
Sbjct: 231 DPIPADLVIVGIGIIPAISPLVVAGAKAS-NGLLVDASGRTSIPHVYALGDCAAHVNSFA 289
Query: 351 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 395
D R+E V +A A + + Y +P+F+S ++
Sbjct: 290 PNDIPIRLESVQNANDQAVVVARTICGTAAQ-YHAVPWFWSSQYD 333
|
|
| UNIPROTKB|P95034 Rv0688 "PUTATIVE FERREDOXIN REDUCTASE" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 107/341 (31%), Positives = 158/341 (46%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
VIVGGG AA A G + GRL IVS E + PY+RP L+K L A P
Sbjct: 19 VIVGGGLAAARTAEQLRRAGYS-GRLTIVSDEVHLPYDRPPLSKEVLRSEVDDVALKPR- 76
Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
E+Y EK I + S+D +QT+ G +L Y L++ATG
Sbjct: 77 -------------EFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVP 123
Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDTT 234
R P L G+ +R ++ AL A+ +IG EVAA+ G +D
Sbjct: 124 RRIPSLPD--LDGIRVLRSFDESMALRKHASAARHAVVVGAGFIGCEVAASLRGLGVDVV 181
Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST 294
++ P+ L + + Q +L++ GV V+ G ++ E G V AV L DG+
Sbjct: 182 LVEPQPAPLASVLGEQIGQLVTRLHRDEGVD-VRTGVTVA--EVRGKGHVDAVVLTDGTE 238
Query: 295 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354
+ AD +V+GIG+ P E G+ G+ D RT P ++A+GDVA++ M
Sbjct: 239 LPADLVVVGIGSTPATEWLEGSGVEVD-NGVICDKAGRTSAPNVWALGDVASWRDPM-GH 296
Query: 355 TARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE 395
ARVEH + A+ + A+L T +PYF+S ++
Sbjct: 297 QARVEHWSNVADQARVVVPAMLGTDVPTGVVVPYFWSDQYD 337
|
|
| UNIPROTKB|Q9L4M8 alkT "Rubredoxin-NAD(+) reductase" [Pseudomonas putida (taxid:303)] | Back alignment and assigned GO terms |
|---|
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 102/327 (31%), Positives = 154/327 (47%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
VIVG G A AA ++G G + ++S+E+ PY+RP L+K +L + A +P
Sbjct: 4 VIVGAGTAGVNAAFWLRQYGYKGG-IRLLSRESVTPYQRPPLSKAFLTSETAESA-IP-- 59
Query: 115 HTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
PE +Y I + + SID+ ++ + G+ Y LI+ATG +
Sbjct: 60 ----------LKPESFYTNNNISISLNTQIVSIDVGRKVVAAKDGEEYAYEKLILATGAS 109
Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKXXXXXXXYIGMEVAAAAVGWKLDT 233
A R + G L GV Y+R + DA L L ++ IG+EVA+AAVG
Sbjct: 110 ARRLTCE-GSELSGVCYLRSMEDAKNLRRKLVESASVVVLGGGVIGLEVASAAVGIGRRV 168
Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS 293
T+I ++ R+ TP+ A + GV F K+ A + +++ G +G V LE G
Sbjct: 169 TVIEAAPRVMARVVTPAAANLVRARLEAEGVGF-KLNAKLTSIK-GRNGHVNQCVLESGE 226
Query: 294 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353
I AD I++GIGA P + L S G+ VD Q RT I+AIGD A +
Sbjct: 227 KIQADLIIVGIGAIPELELATEAALEVS-NGVVVDDQMRTSDTSIYAIGDCALARNLFFG 285
Query: 354 RTARVEHVDHARQSAQHCIKALLSAQT 380
R+E + +A AQ ++ T
Sbjct: 286 TMVRLETIHNAVTQAQIVASSICGTST 312
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P92947 | MDARP_ARATH | 1, ., 6, ., 5, ., 4 | 0.8008 | 0.9815 | 0.9736 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00002544001 | SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (490 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 489 | |||
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-60 | |
| COG0446 | 415 | COG0446, HcaD, Uncharacterized NAD(FAD)-dependent | 9e-44 | |
| PRK09754 | 396 | PRK09754, PRK09754, phenylpropionate dioxygenase f | 5e-41 | |
| COG1251 | 793 | COG1251, NirB, NAD(P)H-nitrite reductase [Energy p | 1e-33 | |
| TIGR02374 | 785 | TIGR02374, nitri_red_nirB, nitrite reductase [NAD( | 1e-30 | |
| TIGR03385 | 427 | TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | 3e-27 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 2e-23 | |
| PRK09564 | 444 | PRK09564, PRK09564, coenzyme A disulfide reductase | 4e-23 | |
| COG1249 | 454 | COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas | 1e-22 | |
| TIGR01350 | 460 | TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog | 2e-21 | |
| PRK04965 | 377 | PRK04965, PRK04965, NADH:flavorubredoxin oxidoredu | 1e-19 | |
| PRK06116 | 450 | PRK06116, PRK06116, glutathione reductase; Validat | 3e-17 | |
| PRK14989 | 847 | PRK14989, PRK14989, nitrite reductase subunit NirD | 2e-16 | |
| COG0492 | 305 | COG0492, TrxB, Thioredoxin reductase [Posttranslat | 7e-16 | |
| PRK13512 | 438 | PRK13512, PRK13512, coenzyme A disulfide reductase | 2e-15 | |
| PRK05976 | 472 | PRK05976, PRK05976, dihydrolipoamide dehydrogenase | 2e-15 | |
| PRK06416 | 462 | PRK06416, PRK06416, dihydrolipoamide dehydrogenase | 8e-15 | |
| PRK06370 | 463 | PRK06370, PRK06370, mercuric reductase; Validated | 1e-14 | |
| pfam00070 | 82 | pfam00070, Pyr_redox, Pyridine nucleotide-disulphi | 6e-14 | |
| PRK07818 | 466 | PRK07818, PRK07818, dihydrolipoamide dehydrogenase | 6e-14 | |
| TIGR01421 | 450 | TIGR01421, gluta_reduc_1, glutathione-disulfide re | 2e-13 | |
| TIGR02053 | 463 | TIGR02053, MerA, mercuric reductase | 3e-13 | |
| PTZ00058 | 561 | PTZ00058, PTZ00058, glutathione reductase; Provisi | 1e-12 | |
| PRK06292 | 460 | PRK06292, PRK06292, dihydrolipoamide dehydrogenase | 2e-12 | |
| PRK05249 | 461 | PRK05249, PRK05249, soluble pyridine nucleotide tr | 6e-12 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 2e-11 | |
| PRK07251 | 438 | PRK07251, PRK07251, pyridine nucleotide-disulfide | 2e-11 | |
| TIGR01424 | 446 | TIGR01424, gluta_reduc_2, glutathione-disulfide re | 6e-11 | |
| TIGR01423 | 486 | TIGR01423, trypano_reduc, trypanothione-disulfide | 6e-11 | |
| PRK06327 | 475 | PRK06327, PRK06327, dihydrolipoamide dehydrogenase | 8e-11 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 3e-10 | |
| TIGR03169 | 364 | TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu | 6e-10 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 9e-10 | |
| PTZ00052 | 499 | PTZ00052, PTZ00052, thioredoxin reductase; Provisi | 1e-09 | |
| PRK07846 | 451 | PRK07846, PRK07846, mycothione reductase; Reviewed | 1e-09 | |
| TIGR03452 | 452 | TIGR03452, mycothione_red, mycothione reductase | 1e-09 | |
| TIGR01292 | 299 | TIGR01292, TRX_reduct, thioredoxin-disulfide reduc | 2e-09 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 6e-09 | |
| TIGR01438 | 484 | TIGR01438, TGR, thioredoxin and glutathione reduct | 6e-09 | |
| PRK06115 | 466 | PRK06115, PRK06115, dihydrolipoamide dehydrogenase | 9e-09 | |
| TIGR03140 | 515 | TIGR03140, AhpF, alkyl hydroperoxide reductase sub | 4e-08 | |
| PRK06912 | 458 | PRK06912, acoL, dihydrolipoamide dehydrogenase; Va | 7e-08 | |
| PRK08010 | 441 | PRK08010, PRK08010, pyridine nucleotide-disulfide | 2e-07 | |
| PLN02507 | 499 | PLN02507, PLN02507, glutathione reductase | 9e-07 | |
| PRK14694 | 468 | PRK14694, PRK14694, putative mercuric reductase; P | 1e-06 | |
| PLN02546 | 558 | PLN02546, PLN02546, glutathione reductase | 2e-06 | |
| PTZ00318 | 424 | PTZ00318, PTZ00318, NADH dehydrogenase-like protei | 2e-06 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 2e-06 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 6e-06 | |
| PRK06467 | 471 | PRK06467, PRK06467, dihydrolipoamide dehydrogenase | 6e-06 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 8e-06 | |
| pfam07992 | 283 | pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp | 1e-05 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 1e-05 | |
| pfam13738 | 202 | pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp | 8e-05 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 1e-04 | |
| PRK07845 | 466 | PRK07845, PRK07845, flavoprotein disulfide reducta | 3e-04 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 4e-04 | |
| COG1252 | 405 | COG1252, Ndh, NADH dehydrogenase, FAD-containing s | 5e-04 | |
| COG3634 | 520 | COG3634, AhpF, Alkyl hydroperoxide reductase, larg | 5e-04 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 9e-04 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 200 bits (510), Expect = 1e-60
Identities = 97/299 (32%), Positives = 140/299 (46%), Gaps = 22/299 (7%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
VI+GGG AG AA + ++ ++ +E Y R L K L L+
Sbjct: 3 VIIGGG-PAGLAAAIRL--ARLGLKVALIEREGGTCYNRGCLPKKLL--LEVAEGLELA- 56
Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATG 171
G E YKE G+E++ V ID ++T++ G+ + Y LI+ATG
Sbjct: 57 ------IGLALPEEVYKEFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATG 110
Query: 172 CTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231
I G V +R V D+D ++ LE K+VVVVGGGYIG+E+AAA
Sbjct: 111 ARPRIPG--IPGV--EVATLRGVIDSDEILELLELPKRVVVVGGGYIGLELAAALAKLGK 166
Query: 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED 291
+ T++ + LL R A E+L + V V + + DG+V VKL D
Sbjct: 167 EVTVVERRDRLLARADDEISAALLEKLEKLLLG--VTVLLVVVVVVKVGDGKVVEVKLGD 224
Query: 292 GSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349
G +DAD +++ IG +P E+ G+ G I VD RT +PGI+A GDVA
Sbjct: 225 GEELDADVVLVAIGRRPNTELLEQAGVELDERGYIVVDEYLRTSVPGIYAAGDVAEGKP 283
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 9e-44
Identities = 94/349 (26%), Positives = 147/349 (42%), Gaps = 24/349 (6%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
VIVGGG A AA T +A ++ +E Y R L+ + L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEIT-LIGREPKYSYYRCPLSLYVGGGI-ASLEDLRY 58
Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
P + + GI++ VTSID E + ++ + G++ +Y L++ATG
Sbjct: 59 P------------PRFNRATGIDVRTGTEVTSIDPENKVVLLDDGEI-EYDYLVLATGAR 105
Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
P GV +R DA+AL E K VVVVG G IG+E A AA
Sbjct: 106 PRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKV 162
Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA-VKLEDG 292
T+I + L +L P +A+ +L ++ GV+ + +G + +E + V V DG
Sbjct: 163 TLIEAADRLGGQLLDPEVAEELAELLEKYGVE-LLLGTKVVGVEGKGNTLVVERVVGIDG 221
Query: 293 STIDADTIVIGIGAKPTV--SPFERVGLNSSVGGIQVDGQFRT-RMPGIFAIGDVAAFPL 349
I AD ++IG G +P V + GL + G + VD + T + P ++A GDVA P
Sbjct: 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281
Query: 350 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEG 398
+ R+ A + + ++ L S V +
Sbjct: 282 AETGKGGRIALWAIAVAAGRI-AAENIAGALRIPGLLGTVISDVGDLCA 329
|
Length = 415 |
| >gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 5e-41
Identities = 86/298 (28%), Positives = 136/298 (45%), Gaps = 26/298 (8%)
Query: 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
+ +IVGGG AA AA + + G G L + S E + PYERP L+K L + +
Sbjct: 3 EKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQ 61
Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
+ W++E + + + ++ + + L+ +G+ + L +AT
Sbjct: 62 V-------------LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIAT 108
Query: 171 GCTASRFP--EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
G A P + +G +R DA L L+ + VV+VG G IG+E+AA+A
Sbjct: 109 GAAARPLPLLDALG---ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQ 165
Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRY-EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287
+ T+I ++ R P QRY Q +QQ GV+ + +E DG +
Sbjct: 166 RRCKVTVIELAATVMGRN-APPPVQRYLLQRHQQAGVRILLN----NAIEHVVDGEKVEL 220
Query: 288 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 345
L+ G T+ AD ++ GIG L+++ GI +D RT P IFA GDVA
Sbjct: 221 TLQSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVA 277
|
Length = 396 |
| >gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 134 bits (340), Expect = 1e-33
Identities = 76/312 (24%), Positives = 133/312 (42%), Gaps = 40/312 (12%)
Query: 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARL 111
++ VI+G G A +E + + +E Y R L+
Sbjct: 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS------------- 50
Query: 112 PGFHTCVGSGGER------QTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
V +G + +WY+E GI + + V ID + + T++G+ + Y
Sbjct: 51 ------VLAGEKTAEDISLNRNDWYEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDK 104
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
LI+ATG P G LPGV R + D +A++ KK VV+GGG +G+E A
Sbjct: 105 LIIATGSYPFILPIP-GSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARG 163
Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285
++ T++ L++R + + + + G+K + + + + E + +V
Sbjct: 164 LKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVL-LEKNTE--EIVGEDKVE 220
Query: 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-----GIQVDGQFRTRMPGIFA 340
V+ DG+ I AD +V+ +G +P L G GI V+ +T P I+A
Sbjct: 221 GVRFADGTEIPADLVVMAVGIRP------NDELAKEAGLAVNRGIVVNDYMQTSDPDIYA 274
Query: 341 IGDVAAFPLKMY 352
+G+ A K+Y
Sbjct: 275 VGECAEHRGKVY 286
|
Length = 793 |
| >gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 1e-30
Identities = 77/296 (26%), Positives = 130/296 (43%), Gaps = 26/296 (8%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
V+VG G A ++ + I +E + Y R L+ D L
Sbjct: 2 VLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSK 61
Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
+WY++ GI + + V ID +++ +IT++G+ L Y LI+ATG
Sbjct: 62 -------------DWYEKHGITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYP 108
Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
P G GV+ R + D DA+++ ++ KK V+GGG +G+E A +D +
Sbjct: 109 FILPIP-GADKKGVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVS 167
Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQ----QNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290
+I H L L Q +L Q Q G+ F+ +E + ++ +
Sbjct: 168 VI----HHAPGLMAKQLDQTAGRLLQRELEQKGLTFL---LEKDTVEIVGATKADRIRFK 220
Query: 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
DGS+++AD IV+ G +P G+ + GI V+ +T P I+A+G+ A
Sbjct: 221 DGSSLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAE 275
|
[Central intermediary metabolism, Nitrogen metabolism]. Length = 785 |
| >gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-27
Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 15/230 (6%)
Query: 125 QTPE-WYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFP 178
TPE + K++GI++ V ++ E+QT++ TN Y LI++ G + P
Sbjct: 48 YTPEVFIKKRGIDVKTNHEVIEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPIV-P 106
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
G L V +R++ D DA+ ++ K + VV++GGGYIG+E+A A + T+I
Sbjct: 107 NIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLI 166
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
+L +LF + Q E+ +++ + ++ + ++E G G
Sbjct: 167 HRSERILNKLFDEEMNQIVEEELKKHEINL-RLNEEVDSIE----GEERVKVFTSGGVYQ 221
Query: 297 ADTIVIGIGAKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDVA 345
AD +++ G KP + GL G I V+ +F+T +P I+A GDVA
Sbjct: 222 ADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVA 271
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 73/332 (21%), Positives = 120/332 (36%), Gaps = 72/332 (21%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERPALTKGYLFPLDKKPARLP 112
VI+GGG AA+ D + +V + Y + + G L + +P
Sbjct: 7 VILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFTPLLYEVATG---TLSESEIAIP 62
Query: 113 GFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172
++ G Q VT ID + + + + Y L+VA G
Sbjct: 63 -------------LRALLRKSGNVQFVQGEVTDIDRDAKKVTLADLGEISYDYLVVALGS 109
Query: 173 TASRFPEKIGGYLPGV----HYIRDVADADA----LISSLEKAKK---------VVVVGG 215
+ F +PG ++ + DA L+ + EKA + +V+VGG
Sbjct: 110 ETNYFG------IPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGG 163
Query: 216 GYIGMEVAAAAVGWKLDTTIIFPEN------HLLQRL------FTPSLAQRYEQLYQQNG 263
G G+E+A F + L++ F P L++ E+ ++ G
Sbjct: 164 GPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223
Query: 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKP-----TVSPFERVG 317
V+ V +G + + V L+DG I ADT+V G + +S E
Sbjct: 224 VE-VLLGTPVTEVTPDG------VTLKDGEEEIPADTVVWAAGVRASPLLKDLSGLE--- 273
Query: 318 LNSSVGGIQVDGQFR-TRMPGIFAIGDVAAFP 348
G + V+ + P IFA GD AA
Sbjct: 274 -TDRRGRLVVNPTLQVPGHPDIFAAGDCAAVI 304
|
Length = 405 |
| >gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-23
Identities = 64/228 (28%), Positives = 106/228 (46%), Gaps = 13/228 (5%)
Query: 126 TPEWYKEKGIEMIYQDPVTSIDIEKQTLI-----TNSGKLLKYGSLIVATGCTASRFPEK 180
TPE + + GI++ + V +D + +T+ T S Y L++ATG P
Sbjct: 62 TPEEFIKSGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGAR-PIIPPI 120
Query: 181 IGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
L V+ ++ + D AL L E+ K +V++G G+IG+E AA + II
Sbjct: 121 KNINLENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQL 180
Query: 239 ENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDAD 298
E+ +L F + E+ ++NGV+ + + +K+L + +V V D +AD
Sbjct: 181 EDRILPDSFDKEITDVMEEELRENGVE-LHLNEFVKSLIG--EDKVEGVV-TDKGEYEAD 236
Query: 299 TIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVA 345
+++ G KP E GL + G I VD T + I+A GD A
Sbjct: 237 VVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCA 284
|
Length = 444 |
| >gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 86/329 (26%), Positives = 140/329 (42%), Gaps = 54/329 (16%)
Query: 55 VIVGGGNAAGY-AARTFVEHGM------ADGRL--------CIVSK------EAYAPYER 93
V++G G AGY AA + G+ RL CI SK E
Sbjct: 8 VVIGAG-PAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66
Query: 94 PALTKGYLFPLDKKP-----ARLPGFHTCVGSGGERQTPEWYKEKGIEMIY-----QDPV 143
A G + K AR + G E K+ G+++I DP
Sbjct: 67 AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEG----LLKKNGVDVIRGEARFVDP- 121
Query: 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 203
++++ + T + ++I+ATG + R P G + G + D+ +
Sbjct: 122 HTVEVTGEDKETITAD-----NIIIATG-SRPRIPPGPG--IDGARIL----DSSDALFL 169
Query: 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263
LE K +V+VGGGYIG+E A+ T++ + +L P +++ + ++ G
Sbjct: 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKGG 228
Query: 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-S 320
VK + + +E DG + ++ +G TI+AD +++ IG KP E G+
Sbjct: 229 VKI-LLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELD 287
Query: 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349
G I+VD Q T +PGI+AIGDV P+
Sbjct: 288 DRGFIKVDDQMTTNVPGIYAIGDVIGGPM 316
|
Length = 454 |
| >gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-21
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 11/198 (5%)
Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVG 214
N + L+ ++I+ATG P G + V + ++ E + +V++G
Sbjct: 124 ENGEETLEAKNIIIATGSRPRSLP----GPFDFDGKV--VITSTGALNLEEVPESLVIIG 177
Query: 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIK 274
GG IG+E A+ T+I + +L +++ ++ ++ GVK + +
Sbjct: 178 GGVIGVEFASIFASLGSKVTVIEMLDRILP-GEDAEVSKVLQKALKKKGVKIL-TNTKVT 235
Query: 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQF 331
+E D K + T+ + +++ +G KP E++G+ G I VD
Sbjct: 236 AVEKNDDQVTYENKGGETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVVDEYM 295
Query: 332 RTRMPGIFAIGDVAAFPL 349
RT +PGI+AIGDV P+
Sbjct: 296 RTNVPGIYAIGDVIGGPM 313
|
This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460 |
| >gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 1e-19
Identities = 59/214 (27%), Positives = 100/214 (46%), Gaps = 14/214 (6%)
Query: 135 IEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDV 194
+ + VT ID E Q + + G +Y L++ATG +A P + ++ ++
Sbjct: 73 LRLFPHTWVTDIDAEAQVVKSQ-GNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEY 131
Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 252
A+ + A++V+VVGGG IG E+A G + T++ LL L P ++
Sbjct: 132 RAAETQLRD---AQRVLVVGGGLIGTELAMDLCRAGKAV--TLVDNAASLLASLMPPEVS 186
Query: 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312
R + + GV + + ++ LE G L+ G +I+ D ++ G +P +
Sbjct: 187 SRLQHRLTEMGVHL-LLKSQLQGLEKTDSGIR--ATLDSGRSIEVDAVIAAAGLRPNTAL 243
Query: 313 FERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVA 345
R GL +V GI VD +T P I+A+GD A
Sbjct: 244 ARRAGL--AVNRGIVVDSYLQTSAPDIYALGDCA 275
|
Length = 377 |
| >gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 3e-17
Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 8/141 (5%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
K+V VVG GYI +E A G +T + R F P + + + ++ G++
Sbjct: 168 KRVAVVGAGYIAVEFAGVLNGLGSETHLFV-RGDAPLRGFDPDIRETLVEEMEKKGIRLH 226
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVG 323
A K +E +DG + + LEDG T+ D ++ IG +P E G LN G
Sbjct: 227 T-NAVPKAVEKNADGSLT-LTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEK-G 283
Query: 324 GIQVDGQFRTRMPGIFAIGDV 344
I VD T +PGI+A+GDV
Sbjct: 284 YIIVDEYQNTNVPGIYAVGDV 304
|
Length = 450 |
| >gnl|CDD|184951 PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-16
Identities = 64/237 (27%), Positives = 115/237 (48%), Gaps = 23/237 (9%)
Query: 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186
+Y++ GI+++ + +I+ +++ + +++G+ + Y LI+ATG P K G
Sbjct: 66 EGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIK-GSETQ 124
Query: 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 246
R + D +A+ + ++K+ VVGGG +G+E A A ++T +I
Sbjct: 125 DCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEAAGALKNLGVETHVI---------E 175
Query: 247 FTPSLAQRYEQLYQQNGVKF--------VKVGASIKNLEAGSDGRVA--AVKLEDGSTID 296
F P L EQL Q G + V+V S LE +G A ++ DGS ++
Sbjct: 176 FAPMLMA--EQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELE 233
Query: 297 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 352
D IV G +P + GL + GGI ++ +T P I+AIG+ A++ +++
Sbjct: 234 VDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVF 290
|
Length = 847 |
| >gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 7e-16
Identities = 75/323 (23%), Positives = 115/323 (35%), Gaps = 76/323 (23%)
Query: 55 VIVGGG----NAAGYAAR------TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
+I+GGG AA YAAR +E G G+L + + Y
Sbjct: 7 IIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQL-----------TKTTDVENY---- 51
Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK--------GIEMIYQDPVTSIDIEKQT-LIT 155
PGF E+ G+E++ D V +++E +
Sbjct: 52 -------PGFP-------GGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEGGPFKVK 96
Query: 156 NSGKLLKYGSLIVATGCTASRFPEKIGGYLP----GVHYIRDVADADALISSLEKAKKVV 211
+ ++I+ATG A + G GV Y A D K K VV
Sbjct: 97 TDKGTYEAKAVIIATG--AGARKLGVPGEEEFEGKGVSY---CATCDGF----FKGKDVV 147
Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271
V+GGG +E A T++ + F E+L + ++
Sbjct: 148 VIGGGDSAVEEALYLSKIAKKVTLVHRRDE-----FRAEEILV-ERLKKNVKIEV-LTNT 200
Query: 272 SIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 327
+K + G D V V L++ + D + I IG P + +G+ G I V
Sbjct: 201 VVKEIL-GDD--VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVV 257
Query: 328 DGQFRTRMPGIFAIGDVAAFPLK 350
D + T +PGIFA GDVA +
Sbjct: 258 DEEMETSVPGIFAAGDVADKNGR 280
|
Length = 305 |
| >gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 57/230 (24%), Positives = 100/230 (43%), Gaps = 23/230 (10%)
Query: 126 TPEWYKE-KGIEMIYQDPVTSIDIEKQTL-----ITNSGKLLKYGSLIVATGCTASRFPE 179
TPE + + K I + V +I+ E+QT+ TN Y LI++ G +A+
Sbjct: 63 TPEKFYDRKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGF 122
Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
+ +R++ D DA+ ++ + K +VVG GYI +EV L T+I
Sbjct: 123 ES----DITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIH 178
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDA 297
+ + +L + Q + + + ++ I + +G V + G
Sbjct: 179 RSDKIN-KLMDADMNQPILDELDKREIPY-RLNEEIDAI----NGN--EVTFKSGKVEHY 230
Query: 298 DTIVIGIGAKPTVSPFE--RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 345
D I+ G+G P E + L+ G I V+ +F T +P I+AIGD+
Sbjct: 231 DMIIEGVGTHPNSKFIESSNIKLDDK-GFIPVNDKFETNVPNIYAIGDII 279
|
Length = 438 |
| >gnl|CDD|235660 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 2e-15
Identities = 56/185 (30%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVAA 224
L++ATG SR P ++ G Y+ ++ +AL SLE K +V+VGGG IG+E A+
Sbjct: 146 LLIATG---SR-PVELPGLPFDGEYV--ISSDEAL--SLETLPKSLVIVGGGVIGLEWAS 197
Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284
+ ++ T++ + +L L++ +L ++ GV+ V GA + L DG V
Sbjct: 198 MLADFGVEVTVVEAADRILP-TEDAELSKEVARLLKKLGVRVVT-GAKVLGLTLKKDGGV 255
Query: 285 AAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFA 340
V +G T++AD +++ +G +P E ++ G IQ+D +T+ I+A
Sbjct: 256 LIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQTKERHIYA 315
Query: 341 IGDVA 345
IGDV
Sbjct: 316 IGDVI 320
|
Length = 472 |
| >gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 8e-15
Identities = 63/205 (30%), Positives = 104/205 (50%), Gaps = 28/205 (13%)
Query: 155 TNSGKLLKYGSLIVATGCTASRFPE-KIGGYLPGVHYIRDVADAD-ALISSLEKA-KKVV 211
+ + ++I+ATG P +I G R + +D AL +L++ K +V
Sbjct: 127 EDGEQTYTAKNIILATGSRPRELPGIEIDG--------RVIWTSDEAL--NLDEVPKSLV 176
Query: 212 VVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
V+GGGYIG+E A+A + + TI+ +L +++ E+ ++ G+K K
Sbjct: 177 VIGGGYIGVEFASA---YASLGAEVTIVEALPRILP-GEDKEISKLAERALKKRGIKI-K 231
Query: 269 VGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSVG 323
GA K +E DG V LEDG T++AD +++ +G +P E +G+ + G
Sbjct: 232 TGAKAKKVEQTDDG--VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRG 289
Query: 324 GIQVDGQFRTRMPGIFAIGDVAAFP 348
I+VD Q RT +P I+AIGD+ P
Sbjct: 290 FIEVDEQLRTNVPNIYAIGDIVGGP 314
|
Length = 462 |
| >gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 1e-14
Identities = 51/197 (25%), Positives = 83/197 (42%), Gaps = 23/197 (11%)
Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR-----DVADADALISSLEKAKKVV 211
G+ L+ + + TG A+ P +PG+ + + D L L V
Sbjct: 128 GGETLRAKRIFINTGARAAI-PP-----IPGLDEVGYLTNETIFSLDELPEHL------V 175
Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271
++GGGYIG+E A + + T+I LL R +A ++ ++ G+ + A
Sbjct: 176 IIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREGIDVR-LNA 233
Query: 272 SIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQV 327
+E DG + G+ I I++ +G P E G+ + G I+V
Sbjct: 234 ECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKV 293
Query: 328 DGQFRTRMPGIFAIGDV 344
D Q RT PGI+A GD
Sbjct: 294 DDQLRTTNPGIYAAGDC 310
|
Length = 463 |
| >gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 6e-14
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
+VVVVGGGYIG+E A+A T++ + LL R F +A+ ++ ++NG++ +
Sbjct: 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLL-RGFDEEIAKILQEKLEKNGIEVLL 59
Query: 269 VGASIKNLEAGSDGRVAAVKLEDG 292
+++ +E DG V +K DG
Sbjct: 60 -NTTVEEIEGNGDGVVVKLKTGDG 82
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82 |
| >gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 56/201 (27%), Positives = 93/201 (46%), Gaps = 29/201 (14%)
Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
+ + + + I+ATG + LPG +V + I S E K +V+ G G
Sbjct: 131 TETVTFDNAIIATGSSTR--------LLPGTSLSENVVTYEEQILSRELPKSIVIAGAGA 182
Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------TPSLAQRYEQLYQQNGVKFVKVG 270
IGME A + +D TI+ L R + +A++Y++L GVK + G
Sbjct: 183 IGMEFAYVLKNYGVDVTIV----EFLDRALPNEDAEVSKEIAKQYKKL----GVK-ILTG 233
Query: 271 ASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGI 325
+++++ V +DG ++AD ++ IG P V + E+ G+ + G I
Sbjct: 234 TKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAI 293
Query: 326 QVDGQFRTRMPGIFAIGDVAA 346
+D RT +P I+AIGDV A
Sbjct: 294 AIDDYMRTNVPHIYAIGDVTA 314
|
Length = 466 |
| >gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 2e-13
Identities = 80/322 (24%), Positives = 139/322 (43%), Gaps = 51/322 (15%)
Query: 53 EFVIVGGGN--------AAGYAARTFVEHGMADGRLCI----VSKE----AYAPYERPAL 96
+++++GGG+ AA + A+ + G C+ V K+ A ER
Sbjct: 4 DYLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHD 63
Query: 97 TKGYLFPL-DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE------ 149
Y F + P ++ + Y ++ + IYQ + ++
Sbjct: 64 AADYGFYQNLENTFNWPEL---------KEKRDAYVDR-LNGIYQKNLEKNKVDVIFGHA 113
Query: 150 ---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206
K + +G+ +++ATG S FPE I G G D+D + E
Sbjct: 114 RFTKDGTVEVNGRDYTAPHILIATGGKPS-FPENIPGAELGT-------DSDGFFALEEL 165
Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266
K+VV+VG GYI +E+A G +T ++ +L R F +++ + Y++ G+
Sbjct: 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL-RSFDSMISETITEEYEKEGINV 224
Query: 267 VKVGASIKNLEAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLN-SSV 322
K+ + +E +G++ + EDG +I D D ++ IG KP E VG+ +
Sbjct: 225 HKL-SKPVKVEKTVEGKL-VIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEK 282
Query: 323 GGIQVDGQFRTRMPGIFAIGDV 344
G I VD T +PGI+A+GDV
Sbjct: 283 GQIIVDEYQNTNVPGIYALGDV 304
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450 |
| >gnl|CDD|233700 TIGR02053, MerA, mercuric reductase | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 49/182 (26%), Positives = 86/182 (47%), Gaps = 13/182 (7%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
++ATG + P +PG+ ++ ++ + + V+GGG IG+E+A A
Sbjct: 133 LIATGARPAIPP------IPGLKEA-GYLTSEEALALDRIPESLAVIGGGAIGVELAQAF 185
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA 286
+ TI+ + LL R P ++ E+ + G++ V A +K + G++
Sbjct: 186 ARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVT-SAQVKAVSVRGGGKIIT 243
Query: 287 VKLEDGS-TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIG 342
V+ G ++AD +++ G +P E+ G+ GGI VD RT PGI+A G
Sbjct: 244 VEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAG 303
Query: 343 DV 344
DV
Sbjct: 304 DV 305
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463 |
| >gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (170), Expect = 1e-12
Identities = 42/205 (20%), Positives = 85/205 (41%), Gaps = 16/205 (7%)
Query: 141 DPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200
D VT + L + G++++ ++++A G P P V +D
Sbjct: 183 DEVTIVSAGVSQL--DDGQVIEGKNILIAVGNK----PI-----FPDVKGKEFTISSDDF 231
Query: 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260
+++AK++ + G GYI +E+ ++ IF + L R F ++ E +
Sbjct: 232 FK-IKEAKRIGIAGSGYIAVELINVVNRLGAESY-IFARGNRLLRKFDETIINELENDMK 289
Query: 261 QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN- 319
+N + + A+++ +E + + + D ++ +G P LN
Sbjct: 290 KNNINII-THANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNI 348
Query: 320 -SSVGGIQVDGQFRTRMPGIFAIGD 343
+ G I+VD RT + I+A+GD
Sbjct: 349 KTPKGYIKVDDNQRTSVKHIYAVGD 373
|
Length = 561 |
| >gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 2e-12
Identities = 54/207 (26%), Positives = 98/207 (47%), Gaps = 49/207 (23%)
Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYI 218
++++ATG SR P +PGV + D L++S L+K K + V+GGG I
Sbjct: 133 NIVIATG---SRVPP-----IPGV----WLILGDRLLTSDDAFELDKLPKSLAVIGGGVI 180
Query: 219 GMEVAAA--AVGWKLDTTIIFPENHLL-------QRLFTPSLAQRYEQLYQQNGVKFVKV 269
G+E+ A +G + T+ + +L + L++ ++ +K+
Sbjct: 181 GLELGQALSRLG--VKVTVFERGDRILPLEDPEVSKQAQKILSKEFK----------IKL 228
Query: 270 GASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL-NSSV----- 322
GA + ++E D +V ++ + TI+AD +++ G +P + +GL N+ +
Sbjct: 229 GAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT---DGLGLENTGIELDER 285
Query: 323 GGIQVDGQFRTRMPGIFAIGDVAAFPL 349
G VD +T +PGI+A GDV P
Sbjct: 286 GRPVVDEHTQTSVPGIYAAGDVNGKPP 312
|
Length = 460 |
| >gnl|CDD|235373 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 6e-12
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 17/163 (10%)
Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRL---FT 248
+ D+D+++S + +++ G G IG E A+ AA+G K T+I + LL L +
Sbjct: 162 IYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVK--VTLINTRDRLLSFLDDEIS 219
Query: 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308
+L+ +GV + ++ +E G DG + V L+ G I AD ++ G
Sbjct: 220 DALSYHLRD----SGVTI-RHNEEVEKVEGGDDGVI--VHLKSGKKIKADCLLYANGRTG 272
Query: 309 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
E GL S G ++V+ ++T +P I+A+GDV FP
Sbjct: 273 NTDGLNLENAGLEADSRGQLKVNENYQTAVPHIYAVGDVIGFP 315
|
Length = 461 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 2e-11
Identities = 56/223 (25%), Positives = 92/223 (41%), Gaps = 43/223 (19%)
Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV--GWKLDTTII--F 237
G L V ++R V + + K+VVV+GGG M+ A A G + + TI+
Sbjct: 246 AGVLDAVDFLRAVGEGEPPFLG----KRVVVIGGGNTAMDAARTARRLGAE-EVTIVYRR 300
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA--------VKL 289
+ P+ + E+ + GV+ + +E +G
Sbjct: 301 TREDM------PAHDEEIEEA-LREGVEI-NWLRTPVEIEGDENGATGLRVITVEKMELD 352
Query: 290 EDG---------STIDADTIVIGIGAKPTVSPFERV-GLNSSVGGIQVDGQFR-TRMPGI 338
EDG T++AD +V+ IG + E V G+ G +QVD F T PG+
Sbjct: 353 EDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGV 412
Query: 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH 381
FA GD+ P RT + H +++A++ I A L + +
Sbjct: 413 FAGGDMVPGP-----RTVTTA-IGHGKKAARN-IDAFLGGEPY 448
|
Length = 564 |
| >gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 53/188 (28%), Positives = 95/188 (50%), Gaps = 24/188 (12%)
Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
++++ TG ++ P +PG+ + V D+ + S +++ ++GGG IG+E A
Sbjct: 121 TIVINTGAVSNVLP------IPGLADSKHVYDSTGIQSLETLPERLGIIGGGNIGLEFAG 174
Query: 225 --AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282
+G K+ T++ + +L R PS+A +Q +++G+ F + A ++ DG
Sbjct: 175 LYNKLGSKV--TVLDAASTILPR-EEPSVAALAKQYMEEDGITF-LLNAHTTEVKN--DG 228
Query: 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL-NSSV-----GGIQVDGQFRTRMP 336
V ED T D ++ G KP P +GL N+ + G I+VD +T +P
Sbjct: 229 DQVLVVTEDE-TYRFDALLYATGRKPNTEP---LGLENTDIELTERGAIKVDDYCQTSVP 284
Query: 337 GIFAIGDV 344
G+FA+GDV
Sbjct: 285 GVFAVGDV 292
|
Length = 438 |
| >gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 6e-11
Identities = 41/140 (29%), Positives = 68/140 (48%), Gaps = 6/140 (4%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
K +++ GGGYI +E A G + TT+I+ +L+ F + + ++ G++ +
Sbjct: 167 KSILIAGGGYIAVEFAGIFRGLGVQTTLIYRGKEILRG-FDDDMRRGLAAALEERGIRIL 225
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGG 324
SI ++ DGR+ A L I AD ++ G P + E G+ + +G
Sbjct: 226 -PEDSITSISKDDDGRLKAT-LSKHEEIVADVVLFATGRSPNTNGLGLEAAGVRLNDLGA 283
Query: 325 IQVDGQFRTRMPGIFAIGDV 344
I VD RT P I+A+GDV
Sbjct: 284 IAVDEYSRTSTPSIYAVGDV 303
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446 |
| >gnl|CDD|200098 TIGR01423, trypano_reduc, trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Score = 64.2 bits (156), Expect = 6e-11
Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 13/148 (8%)
Query: 205 EKAKKVVVVGGGYIGMEVAA-----AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259
E ++V+ VGGG+I +E A G K+ N+++ R F +L + +
Sbjct: 185 EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCY---RNNMILRGFDSTLRKELTKQL 241
Query: 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE--RVG 317
+ NG+ + + + +DG V E G T+D D +++ IG P + +VG
Sbjct: 242 RANGIN-IMTNENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVG 299
Query: 318 LN-SSVGGIQVDGQFRTRMPGIFAIGDV 344
+ + G IQVD RT +P I+AIGDV
Sbjct: 300 VELTKKGAIQVDEFSRTNVPNIYAIGDV 327
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. Length = 486 |
| >gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 8e-11
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 22/192 (11%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHY-IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
I+ATG +LPGV + + + D ++ E KK+ V+G G IG+E+ +
Sbjct: 150 IIATGSEPR--------HLPGVPFDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSV 201
Query: 226 AVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282
W+ + TI+ L +A+ + + + G+ +G I ++ G G
Sbjct: 202 ---WRRLGAEVTILEALPAFLA-AADEQVAKEAAKAFTKQGLDI-HLGVKIGEIKTGGKG 256
Query: 283 RVAAVKLEDGS--TIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGGIQVDGQFRTRMPG 337
A DG T++ D +++ IG P E VGL G I VD RT +P
Sbjct: 257 VSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHCRTNVPN 316
Query: 338 IFAIGDVAAFPL 349
++AIGDV P+
Sbjct: 317 VYAIGDVVRGPM 328
|
Length = 475 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 3e-10
Identities = 65/250 (26%), Positives = 98/250 (39%), Gaps = 52/250 (20%)
Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKAKKVVVVGGGY 217
Y ++ + TG RF G L GV+ ++ V A A L K+VVV+GGG
Sbjct: 225 GYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD-YDLPVGKRVVVIGGGN 283
Query: 218 IGMEVAAAAVGWKL---DTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKVGASI 273
M+ A A +L TI++ +R A E + ++ GV+F A+
Sbjct: 284 TAMDAARTAK--RLGAESVTIVY------RRGREEMPASEEEVEHAKEEGVEFE-WLAAP 334
Query: 274 KNLEAGSDGRVAAVKLE-----------------DGS--TIDADTIVIGIGAKP---TVS 311
+ G +GRV V+ +GS T+ AD ++ IG P +S
Sbjct: 335 VEIL-GDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILS 393
Query: 312 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQ 369
+ LN I D RT +PG+FA GD+ A V V + +A+
Sbjct: 394 TTPGLELNRWGTIIADDETGRTSLPGVFAGGDIV--------TGAATVVWAVGDGKDAAE 445
Query: 370 HCIKALLSAQ 379
I L
Sbjct: 446 A-IHEYLEGA 454
|
Length = 457 |
| >gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 67/324 (20%), Positives = 112/324 (34%), Gaps = 72/324 (22%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
V++GGG+ R + + R+ +++ + PY G L P + G
Sbjct: 3 VLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS------GML------PGMIAGH 50
Query: 115 HT-----------CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKY 163
++ +G T ID +++ ++ + L Y
Sbjct: 51 YSLDEIRIDLRRLARQAGAR--------------FVIAEATGIDPDRRKVLLANRPPLSY 96
Query: 164 GSLIVATGCT----------ASRFPEK-IGGYLPGVHYIRDVADADALISSLEKAKKVVV 212
L + G T P K I +L + + ADA K++ V
Sbjct: 97 DVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAP------PGTKRLAV 150
Query: 213 VGGGYIGMEVA-AAAVGWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
VGGG G+E+A A + LL F + + +L + G++
Sbjct: 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPG-FPAKVRRLVLRLLARRGIEVH 209
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP-FERVGLN-SSVGGI 325
+ G DG + L DG T+ AD I+ GA+ P GL G +
Sbjct: 210 EGAPVT----RGPDGALI---LADGRTLPADAILWATGARA--PPWLAESGLPLDEDGFL 260
Query: 326 QVDGQFRTR-MPGIFAIGDVAAFP 348
+VD ++ P +FA GD A
Sbjct: 261 RVDPTLQSLSHPHVFAAGDCAVIT 284
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 9e-10
Identities = 65/222 (29%), Positives = 96/222 (43%), Gaps = 42/222 (18%)
Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVH----YIRDVADADALISSLEKA-----KKVVV 212
KY ++++ATG SR G LPGV+ Y+ + A EK KKVVV
Sbjct: 118 KYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPPVEGKKVVV 177
Query: 213 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKVGA 271
VG G ++ A AV + + +R + A +YE + GV+F+++
Sbjct: 178 VGAGLTAVDAALEAVLLGAEKVYL-----AYRRTINEAPAGKYEIERLIARGVEFLELVT 232
Query: 272 SIKNLEAGSDGRVAAVKLED------------------GST--IDADTIVIGIGAKPTVS 311
++ + +GRV V+L GS ++ADT+V IG PT
Sbjct: 233 PVRIIG---EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPT-P 288
Query: 312 PFERVGL---NSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
PF + L + G I VD + T G+FA GDV P K
Sbjct: 289 PFAKECLGIELNRKGEIVVDEKHMTSREGVFAAGDVVTGPSK 330
|
Length = 352 |
| >gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 16/183 (8%)
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK-KVVVVGGGYIGMEVAA 224
+++ATG S PE + PG +D I SL K K ++VG YIG+E A
Sbjct: 148 ILIATGGRPS-IPEDV----PGAKEYSITSDD---IFSLSKDPGKTLIVGASYIGLETAG 199
Query: 225 AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284
D T+ + R F +++ + ++ G F G N+E D
Sbjct: 200 FLNELGFDVTVAV--RSIPLRGFDRQCSEKVVEYMKEQGTLF-LEGVVPINIEKMDDK-- 254
Query: 285 AAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIG 342
V DG+T DT++ G KP + +G++ + + T +P IFA+G
Sbjct: 255 IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNIPNIFAVG 314
Query: 343 DVA 345
DV
Sbjct: 315 DVV 317
|
Length = 499 |
| >gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 58/230 (25%), Positives = 104/230 (45%), Gaps = 23/230 (10%)
Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
TL T G+ + +++A G + P I H + L SL V
Sbjct: 118 TLRTGDGEEITADQVVIAAG-SRPVIPPVIADSGVRYHTSDTIMRLPELPESL------V 170
Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF-VKVG 270
+VGGG+I E A + T++ LL R +++R+ +L + ++ V++G
Sbjct: 171 IVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL-RHLDDDISERFTELASK---RWDVRLG 226
Query: 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQV 327
++ + DG ++L+DGST++AD +++ G P G++ G + V
Sbjct: 227 RNVVGVS--QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVV 284
Query: 328 DGQFRTRMPGIFAIGDVAA-FPLK-MYDRTAR-VEH---VDHARQSAQHC 371
D RT G+FA+GDV++ + LK + + AR V+H ++ H
Sbjct: 285 DEYQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHPDDLIASDHR 334
|
Length = 451 |
| >gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 1e-09
Identities = 56/204 (27%), Positives = 99/204 (48%), Gaps = 18/204 (8%)
Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVV 211
TL T G+ + +++A G + P I GV Y + + ++ E + +V
Sbjct: 121 TLRTGDGEEITGDQIVIAAG-SRPYIPPAIAD--SGVRYHTN----EDIMRLPELPESLV 173
Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF-VKVG 270
+VGGGYI E A TI+ LL+ L ++ R+ ++ ++ K+ +++G
Sbjct: 174 IVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHL-DEDISDRFTEIAKK---KWDIRLG 229
Query: 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGG-IQV 327
++ +E DG + L+DGST+ AD +++ G P E G+ G I+V
Sbjct: 230 RNVTAVEQDGDG--VTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKV 287
Query: 328 DGQFRTRMPGIFAIGDVAA-FPLK 350
D RT G++A+GDV++ + LK
Sbjct: 288 DEYGRTSARGVWALGDVSSPYQLK 311
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. Length = 452 |
| >gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-09
Identities = 85/330 (25%), Positives = 131/330 (39%), Gaps = 87/330 (26%)
Query: 55 VIVGGG----NAAGYAART-----FVEHGMADGRLCIVSK-EAYAPYERPALTKGYLFPL 104
+I+G G AA YAAR +E G G+L ++ E Y
Sbjct: 3 IIIGAGPAGLTAAIYAARANLKPLLIEGGEPGGQLTTTTEVENY---------------- 46
Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEK---GIEMIYQDPVTSIDIEKQT--LITNSGK 159
PGF + SG E + ++ G E+IY++ V +D + + T GK
Sbjct: 47 -------PGFPEGI-SGPELME-KMKEQAVKFGAEIIYEE-VIKVDKSGRPFKVYTGDGK 96
Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLP--------GVHYIRDVADADALISSLEKAKKVV 211
++I+ATG AS K+G +P GV Y A D K K+V
Sbjct: 97 EYTAKAVIIATG--AS--ARKLG--IPGEDEFWGRGVSY---CATCDG---PFFKNKEVA 144
Query: 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL-AQRY--EQLYQQNGVKFVK 268
VVGGG +E A L T I + L+ R A++ ++L + ++F
Sbjct: 145 VVGGGDSAIEEA-------LYLTRIAKKVTLVHR--RDKFRAEKILLDRLKKNPKIEF-- 193
Query: 269 VGASIKN---LEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPTVSPFERVGLNS 320
+ N E D +V VK+++ ++ D + I IG +P + +
Sbjct: 194 ----LWNSTVKEIVGDNKVEGVKIKNTVTGEEEELEVDGVFIAIGHEPNTELLKGLLELD 249
Query: 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
G I D RT +PG+FA GDV +
Sbjct: 250 ENGYIVTDEGMRTSVPGVFAAGDVRDKGYR 279
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 57.6 bits (139), Expect = 6e-09
Identities = 47/220 (21%), Positives = 81/220 (36%), Gaps = 50/220 (22%)
Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--------------SSLEKA 207
+Y ++ + TG + +PG + D L + +
Sbjct: 218 QYDAVFIGTGAGLPKL-----MNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG 272
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ--QNGVK 265
K VVV+GGG ++ A A+ + ++ R + R E++ + GVK
Sbjct: 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLY-------RRTREDMTARVEEIAHAEEEGVK 325
Query: 266 FVKVGASIKNLEAGSDGRVAAVKLEDGS--------------------TIDADTIVIGIG 305
F + ++ + +G V AVK ++AD +++ IG
Sbjct: 326 FHFLCQPVEII-GDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIG 384
Query: 306 AKPTVSPFERVGLNSSV-GGIQVDGQFRTRMPGIFAIGDV 344
E L +S G I VD RT +PG+FA GD+
Sbjct: 385 NGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDI 424
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 6e-09
Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 14/184 (7%)
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
++ATG R+P G + +D L S K +VVG Y+ +E A
Sbjct: 147 FLIATGERP-RYPGIPGAKELCI-------TSDDLFSLPYCPGKTLVVGASYVALECAGF 198
Query: 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285
G LD T++ +L R F A + + +++GVKF + IK + + V
Sbjct: 199 LAGIGLDVTVMV--RSILLRGFDQDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKVLVE 256
Query: 286 AVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGL--NSSVGGIQVDGQFRTRMPGIFAI 341
+G + DT+++ IG E VG+ N G I D + +T +P I+A+
Sbjct: 257 FTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEEQTNVPYIYAV 316
Query: 342 GDVA 345
GD+
Sbjct: 317 GDIL 320
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. Length = 484 |
| >gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 9e-09
Identities = 51/178 (28%), Positives = 88/178 (49%), Gaps = 22/178 (12%)
Query: 185 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPEN 240
LPGV + + D+ +S E K +VV+G G IG+E+ + W+ T++
Sbjct: 151 LPGVTIDNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSV---WRRLGAQVTVV---- 203
Query: 241 HLLQRLFTPSL----AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---S 293
L R+ P A+ ++ + G+KF K+G+ + AG+DG ++ G
Sbjct: 204 EYLDRI-CPGTDTETAKTLQKALTKQGMKF-KLGSKVTGATAGADGVSLTLEPAAGGAAE 261
Query: 294 TIDADTIVIGIGAKPTVS--PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349
T+ AD +++ IG +P E VGL + G+ + RT +PG++ IGDV + P+
Sbjct: 262 TLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVPGVWVIGDVTSGPM 319
|
Length = 466 |
| >gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 63/222 (28%), Positives = 100/222 (45%), Gaps = 31/222 (13%)
Query: 143 VTSIDIEKQ----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG-VHYI-RDVAD 196
+ IE + + SG++LK S+IVATG +R+ K+G +PG YI + VA
Sbjct: 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATG---ARW-RKLG--VPGEKEYIGKGVAY 341
Query: 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256
K K V V+GGG G+E A +D I +L+ F L + +
Sbjct: 342 CPHCDGPFFKGKDVAVIGGGNSGIEAA-------IDLAGIVRHVTVLE--FADEL--KAD 390
Query: 257 QLYQQ--NGVKFVKVGASIKNLE-AGSDGRVAAVKLEDGST-----IDADTIVIGIGAKP 308
++ Q + V + S + E G +V ++ +D ++ +D D + + IG P
Sbjct: 391 KVLQDKLKSLPNVDILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVP 450
Query: 309 TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
+ + G I +D + RT +PGIFA GDV P K
Sbjct: 451 NTEWLKDAVELNRRGEIVIDERGRTSVPGIFAAGDVTTVPYK 492
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515 |
| >gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 7e-08
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 203 SLEK-AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261
SL +++VGGG IG E A+ TI+ LL +A + +
Sbjct: 165 SLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGE-DEDIAHILREKLEN 223
Query: 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGL 318
+GVK + GA++K L S + A + E ++A+ +++ +G KP V E+ G+
Sbjct: 224 DGVK-IFTGAALKGLN--SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGV 280
Query: 319 NSSVGGIQVDGQFRTRMPGIFAIGDVA 345
S GI V+ +T +P I+A GDV
Sbjct: 281 QFSNKGISVNEHMQTNVPHIYACGDVI 307
|
Length = 458 |
| >gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 40/163 (24%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
+PG+ V D+ L++ E + ++GGGYIG+E A+ + TI+ + L
Sbjct: 136 IPGITTTPGVYDSTGLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLP 195
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 304
R +A + + GV + + A ++ + + + +V V E D ++I
Sbjct: 196 RE-DRDIADNIATILRDQGVDII-LNAHVERI-SHHENQV-QVHSEHAQLA-VDALLIAS 250
Query: 305 GAKPTVSPFERVGLNSSV---GGIQVDGQFRTRMPGIFAIGDV 344
G +P + +V G I VD T I+A+GDV
Sbjct: 251 GRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDV 293
|
Length = 441 |
| >gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 24/195 (12%)
Query: 158 GKLLKYGS--LIVATGCTASRFPEKIGGYLPGVHYIRDVA-DADALISSLEKAKKVVVVG 214
G L+Y + +++ATG A R +PG +++A +D +S E K+ VV+G
Sbjct: 161 GTKLRYTAKHILIATGSRAQRPN------IPG----KELAITSDEALSLEELPKRAVVLG 210
Query: 215 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272
GGYI +E A+ +G +D +F L R F + + + G+ + +
Sbjct: 211 GGYIAVEFASIWRGMGATVD---LFFRKELPLRGFDDEMRAVVARNLEGRGIN-LHPRTN 266
Query: 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS--PFERVGLN-SSVGGIQVDG 329
+ L G V + G AD ++ G P E VG+ G ++VD
Sbjct: 267 LTQLTKTEGG--IKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE 324
Query: 330 QFRTRMPGIFAIGDV 344
RT +P I+AIGDV
Sbjct: 325 YSRTNIPSIWAIGDV 339
|
Length = 499 |
| >gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 1e-06
Identities = 33/147 (22%), Positives = 70/147 (47%), Gaps = 8/147 (5%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
++++V+G + +E+A A T++ L Q P++ + E +++ G++ +
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQE--DPAVGEAIEAAFRREGIEVL 236
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGI 325
K + E +GR ++ G T+ A+ +++ G P E +G+ + G I
Sbjct: 237 K---QTQASEVDYNGREFILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAI 292
Query: 326 QVDGQFRTRMPGIFAIGDVAAFPLKMY 352
++D +T + GI+A GD P +Y
Sbjct: 293 RIDEHLQTTVSGIYAAGDCTDQPQFVY 319
|
Length = 468 |
| >gnl|CDD|215301 PLN02546, PLN02546, glutathione reductase | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 52/190 (27%), Positives = 87/190 (45%), Gaps = 15/190 (7%)
Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
GKL ++++A G P+ +PG+ + D+DA + K +K+ +VGGGY
Sbjct: 212 GKLYTARNILIAVGGRPF-IPD-----IPGIEH---AIDSDAALDLPSKPEKIAIVGGGY 262
Query: 218 IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277
I +E A G K D + + +L R F + + G++F S + +
Sbjct: 263 IALEFAGIFNGLKSDVHVFIRQKKVL-RGFDEEVRDFVAEQMSLRGIEF-HTEESPQAII 320
Query: 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQFRTR 334
+DG + ++K G+ ++ G KP E VG+ G I+VD RT
Sbjct: 321 KSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS 379
Query: 335 MPGIFAIGDV 344
+P I+A+GDV
Sbjct: 380 VPSIWAVGDV 389
|
Length = 558 |
| >gnl|CDD|185553 PTZ00318, PTZ00318, NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 65/268 (24%), Positives = 105/268 (39%), Gaps = 64/268 (23%)
Query: 139 YQDPVTSIDIE-KQTLITNSGK---------LLKYGSLIVATGCTASRFPEKIGGYLPGV 188
+ V +D E K+ K + Y L+VA G + F I G
Sbjct: 80 LRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTF--NIPGVEERA 137
Query: 189 HYIRDVADADAL--------------ISSLEKAKK---VVVVGGGYIGMEVAAA-AVGWK 230
++++V A + +S+E+ K+ VVVGGG G+E AA A ++
Sbjct: 138 FFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFR 197
Query: 231 LDTTIIFPENHLLQRL--------------FTPSLAQRYEQL-YQQNGVKFVKVGASIKN 275
D + PE L++ F +L ++Y Q ++ GV A +
Sbjct: 198 DDVRNLNPE--LVEECKVTVLEAGSEVLGSFDQAL-RKYGQRRLRRLGVDIRTKTAVKEV 254
Query: 276 LEAGSDGRVAAVKLEDGSTIDADTIV--IGIGAKPTV--SPFERVGLNSSVGGIQVDGQF 331
L+ V L+DG I +V G+G P ++ +S G I VD
Sbjct: 255 LDK-------EVVLKDGEVIPTGLVVWSTGVGPGPLTKQLKVDK----TSRGRISVDDHL 303
Query: 332 RTR-MPGIFAIGDVAAFPLKMYDRTARV 358
R + +P +FA+GD AA + A+V
Sbjct: 304 RVKPIPNVFALGDCAANEERPLPTLAQV 331
|
Length = 424 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-06
Identities = 40/153 (26%), Positives = 64/153 (41%), Gaps = 21/153 (13%)
Query: 208 KKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
K VVVVGGG M+ A AA V T+++ + P+ + YE ++GV+
Sbjct: 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT----KQEMPAWREEYE-EALEDGVE 723
Query: 266 FVKVGASIK-----NL--------EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312
F ++ L E GR V+ + T++ADT++ IG +
Sbjct: 724 FKELLNPESFDADGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTEL 783
Query: 313 FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 344
+ G+ G VD T + ++ IGDV
Sbjct: 784 LKANGIPLDKKGWPVVDANGETSLTNVYMIGDV 816
|
Length = 1019 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 6e-06
Identities = 54/221 (24%), Positives = 82/221 (37%), Gaps = 42/221 (19%)
Query: 159 KLLK-YGSLIVATGCTASR---FPEKIGGYLPGVHY--------IRDVADADALISSLEK 206
+LL Y ++ + TG R P G L GVH+ R V + K
Sbjct: 224 ELLAEYDAVFLGTGAYKPRDLGIP---GRDLDGVHFAMDFLIQNTRRVLGDETEPFISAK 280
Query: 207 AKKVVVVGGGYIGMEVAAAAV--GWK----LDTTIIFPENHLLQRLFTPSLAQRYEQLY- 259
K VVV+GGG GM+ A+ G K D + P + P + E
Sbjct: 281 GKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN-KNNPWPYWPMKLEVSNA 339
Query: 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLED------------GS--TIDADTIVIGIG 305
+ GV+ K E G +G+V VK+ GS + AD +++ +G
Sbjct: 340 HEEGVERE-FNVQTKEFE-GENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397
Query: 306 AKPTVSP-FERVGLNSSVGG--IQVDGQFRTRMPGIFAIGD 343
+ + G+ G D ++T P +FA GD
Sbjct: 398 FTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGD 438
|
Length = 471 |
| >gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-06
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 20/153 (13%)
Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGV 264
K+++V+GGG IG+E+ +G ++D +F + P+ + +++ +
Sbjct: 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ-------VIPAADKDIVKVFTKRIKK 227
Query: 265 KF-VKVGASIKNLEAGSDGRVAAVKLEDGSTIDA----DTIVIGIGAKPTVSPF--ERVG 317
+F + + + +EA DG V +E D +++ +G P E+ G
Sbjct: 228 QFNIMLETKVTAVEAKEDGIY--VTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAG 285
Query: 318 LN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349
+ G I+VD Q RT +P IFAIGD+ P+
Sbjct: 286 VEVDERGFIRVDKQCRTNVPHIFAIGDIVGQPM 318
|
Length = 471 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 8e-06
Identities = 53/188 (28%), Positives = 88/188 (46%), Gaps = 35/188 (18%)
Query: 179 EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT-TIIF 237
E++ G + G+ ++R+VA AL KKVVV+GGG ++ A A+ ++ TI++
Sbjct: 299 EELPGVISGIDFLRNVALGTAL----HPGKKVVVIGGGNTAIDAARTALRLGAESVTILY 354
Query: 238 -------PENHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279
P N L+ L P +R E G++ + ++ E
Sbjct: 355 RRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSE-----GGLELTAI--KMQQGEPD 407
Query: 280 SDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQ-FRTRM 335
GR V +E GS T+ ADT++ IG + E G+ +S G ++VD + +T +
Sbjct: 408 ESGRRRPVPVE-GSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSV 466
Query: 336 PGIFAIGD 343
G+FA GD
Sbjct: 467 AGVFAGGD 474
|
Length = 652 |
| >gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)
Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------LLQRLFTPSLAQRY- 255
VV++GGG G+ A L +I E LL+ LA
Sbjct: 1 DVVIIGGGPAGLAAAIRLARLGLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAIGLA 60
Query: 256 --EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313
E++Y++ GV+ V +G + +++ G V +E G I D ++I GA+P +
Sbjct: 61 LPEEVYKEFGVE-VLLGTEVVDIDRGE-KTVVLKDVETGREITYDKLIIATGARPRIPGI 118
Query: 314 ERVGL 318
V +
Sbjct: 119 PGVEV 123
|
This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 33/163 (20%)
Query: 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGV 264
KKV VVGGG M+ A A + I + R + R E++ ++ G+
Sbjct: 570 GKKVAVVGGGNTAMDSARTAKRLGAERVTI------VYRRSEEEMPARLEEVKHAKEEGI 623
Query: 265 KFVKVGASIKNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGI 304
+F+ + I+ L A G V V L+ D S T+D D +++ +
Sbjct: 624 EFLTLHNPIEYL-ADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSV 682
Query: 305 GAKPT---VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDV 344
G P S + LN G I VD + ++ +PGI+A GD+
Sbjct: 683 GVSPNPLVPSSIPGLELNRK-GTIVVDEEMQSSIPGIYAGGDI 724
|
Length = 752 |
| >gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 46/208 (22%), Positives = 77/208 (37%), Gaps = 35/208 (16%)
Query: 55 VIVGGGNAAG-YAARTFVEHGMADGRLCIVSKEA--------YAPYER---PALTKGYLF 102
++VG G AAG A ++ G A + IV + A + P+ R P+ G
Sbjct: 1 LVVGAG-AAGMAFADHLLDLGDAP--VIIVDRGAQPGGHWRKWYPFVRLHQPSFFYGDFG 57
Query: 103 P-------LDKKPARLPGFHTCVGSGGERQTP-EWY-KEKGIEMIYQDPVTSIDIEK--Q 151
+D P SG E E + G+ + VT+++ +
Sbjct: 58 MPDLNALSIDTSPKWDGKAELA--SGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRF 115
Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKI-GGYLPGVHYIRDVADADALISSLEKAKKV 210
+ G+ ++ ++ ATG + P G GVH + + D K K V
Sbjct: 116 VVRLTDGETVRADYVVDATGAFSVPKPPGFPGADAEGVHLVDVLERID------LKGKTV 169
Query: 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFP 238
V+GGG+ ++ A + D T I
Sbjct: 170 AVIGGGHTAIDAALNLLDLGKDVTWITR 197
|
Length = 202 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 1e-04
Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 36/214 (16%)
Query: 208 KKVVVVGGGYIGMEVAAAAV---GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264
K VVVVGGG M+ A AA+ G + T+++ + + P+ + E ++GV
Sbjct: 667 KHVVVVGGGNTAMDAARAALRVPGVE-KVTVVYRRT----KRYMPASREELE-EALEDGV 720
Query: 265 KFVKVGASIK---------NLEAG---SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312
F ++ + ++ G + GR V + + ADT++ +G +
Sbjct: 721 DFKELLSPESFEDGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDL 780
Query: 313 FERVGLNSSVGG-IQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 370
++ G+ G V+ T + +F IGD P + VE + R++A
Sbjct: 781 LQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATI------VEAIADGRKAA-- 832
Query: 371 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVW 404
A+LS + D F E +V+
Sbjct: 833 --NAILSREGLNSDVDKVF---PINEEVRLAEVY 861
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
| >gnl|CDD|236112 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 42/149 (28%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYEQLYQQNGV 264
++VVG G G E A+A + T++ + +L P A+ E+++ + G+
Sbjct: 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL-----PGEDADAAEVLEEVFARRGM 233
Query: 265 KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSSV 322
+K + +++E DG V V L DG T++ ++ +G+ P + E G+ +
Sbjct: 234 TVLK-RSRAESVERTGDGVV--VTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTP 290
Query: 323 GG-IQVDGQFRTRMPGIFAIGDVAA-FPL 349
G I VD RT +PGI+A GD PL
Sbjct: 291 SGHITVDRVSRTSVPGIYAAGDCTGVLPL 319
|
Length = 466 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 35/162 (21%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY--QQNGVK 265
KKV VVGGG + M+ A A+ + I++ R L R E+++ ++ GV
Sbjct: 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVY-------RRSEEELPARVEEVHHAKEEGVI 334
Query: 266 FVKVGASIKNLEAGSDGRVAAVKLE-------DGS-------------TIDADTIVIGIG 305
F + ++ L +G V +K D S ++ DT+++ +G
Sbjct: 335 FDLLTNPVEIL-GDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLG 393
Query: 306 AKPT---VSPFERVGLNSSVGGIQVDGQF-RTRMPGIFAIGD 343
P S + + +N G I D + T G+FA GD
Sbjct: 394 TSPNPLISSTTKGLKINKR-GCIVADEETGLTSKEGVFAGGD 434
|
Length = 464 |
| >gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 19/114 (16%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTII-------FPENHLLQRLFT-----PSLAQRY 255
K++V++GGG+ G+ A D I LL + T +A
Sbjct: 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPL 63
Query: 256 EQLYQ-QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308
L + V+FV+ + +++ D + V L D I D +V+ +G++
Sbjct: 64 RALLRKSGNVQFVQ--GEVTDIDR--DAKK--VTLADLGEISYDYLVVALGSET 111
|
Length = 405 |
| >gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 55/205 (26%), Positives = 89/205 (43%), Gaps = 29/205 (14%)
Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--VADADALISSLEKAKKVVVVG 214
+G +LK ++I+ATG +R+ + +PG R+ VA L K K+V V+G
Sbjct: 308 NGAVLKARTVILATG---ARW-RNMN--VPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIG 361
Query: 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL---AQRYEQLYQQNGVKFVKVGA 271
GG G+E A +D I LL+ F P L A ++L V +
Sbjct: 362 GGNSGVEAA-------IDLAGIVEHVTLLE--FAPELKADAVLQDKLRSLPNVTIIT--- 409
Query: 272 SIKNLEAGSDG-RVAAVKLEDGST-----IDADTIVIGIGAKPTVSPFERVGLNSSVGGI 325
+ + E DG +V ++ D + ++ + + + IG P + + G I
Sbjct: 410 NAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAVELNRRGEI 469
Query: 326 QVDGQFRTRMPGIFAIGDVAAFPLK 350
VD + T +PG+FA GD P K
Sbjct: 470 IVDARGETNVPGVFAAGDCTTVPYK 494
|
Length = 520 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 9e-04
Identities = 63/259 (24%), Positives = 97/259 (37%), Gaps = 45/259 (17%)
Query: 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD--------VADADALISSLE-KAKKV 210
L +Y ++ +ATG R + G GV + D V A + K K+V
Sbjct: 206 LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRV 265
Query: 211 VVVGGGYIGMEVAAAAV--GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFV 267
VV+GGG M+ A A+ G K T + E+ + P+ A + E + GV+ +
Sbjct: 266 VVIGGGDTAMDCAGTALRLGAK-SVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERL 324
Query: 268 KVGASIKNLEAGSDGRVAAVKLED-------------------GST--IDADTIVIGIGA 306
K GRV VK G+ ADT+++ IG
Sbjct: 325 -PFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGF 383
Query: 307 KPTVSPF--ERVGLNSSVGG-IQVDGQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 362
+ + GL G I+VD +T +PG+FA GD V +
Sbjct: 384 EGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVR-----GAAL-VVWAIA 437
Query: 363 HARQSAQHCIKALLSAQTH 381
R++A+ K LL +
Sbjct: 438 EGREAAKAIDKELLLGKAV 456
|
Length = 457 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 489 | |||
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 100.0 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 100.0 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 100.0 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 100.0 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 100.0 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 100.0 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 100.0 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 100.0 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 100.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 100.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 100.0 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 100.0 | |
| PLN02507 | 499 | glutathione reductase | 100.0 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 100.0 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 100.0 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK06116 | 450 | glutathione reductase; Validated | 100.0 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 100.0 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 100.0 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 100.0 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 100.0 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 100.0 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 100.0 | |
| PLN02546 | 558 | glutathione reductase | 100.0 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 100.0 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 100.0 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 100.0 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 100.0 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 100.0 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 100.0 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 100.0 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 100.0 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 100.0 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 100.0 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 100.0 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 100.0 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 100.0 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 100.0 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 100.0 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 100.0 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 100.0 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 100.0 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 100.0 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 100.0 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 100.0 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 100.0 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 100.0 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 100.0 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 100.0 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 100.0 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 100.0 | |
| KOG0405 | 478 | consensus Pyridine nucleotide-disulphide oxidoredu | 100.0 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 100.0 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 100.0 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.97 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 99.97 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.96 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 99.95 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.95 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 99.94 | |
| KOG4716 | 503 | consensus Thioredoxin reductase [Posttranslational | 99.94 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.94 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.92 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 99.91 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.91 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 99.87 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.82 | |
| KOG3851 | 446 | consensus Sulfide:quinone oxidoreductase/flavo-bin | 99.81 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.8 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.69 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.69 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.68 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.66 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 99.66 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 99.65 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.64 | |
| KOG1800 | 468 | consensus Ferredoxin/adrenodoxin reductase [Nucleo | 99.63 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 99.59 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.48 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 99.47 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 99.24 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.15 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 99.14 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 99.11 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 99.06 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 99.06 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 98.94 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.92 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 98.88 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.86 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 98.84 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 98.83 | |
| PF14759 | 85 | Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LX | 98.82 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.81 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 98.78 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 98.77 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 98.77 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 98.76 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.76 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 98.75 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 98.71 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 98.7 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.68 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.68 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 98.67 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 98.67 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 98.66 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 98.66 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.64 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.63 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 98.63 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 98.61 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.61 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 98.6 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.6 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.6 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 98.59 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.59 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 98.58 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.57 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.56 | |
| PLN02815 | 594 | L-aspartate oxidase | 98.55 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.54 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 98.53 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 98.53 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 98.53 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.52 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 98.51 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 98.51 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.51 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 98.51 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 98.49 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 98.49 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.48 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.48 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.47 | |
| PLN02612 | 567 | phytoene desaturase | 98.47 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.46 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 98.46 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.46 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 98.45 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.45 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 98.43 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.43 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.43 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.43 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.43 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 98.43 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 98.42 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.41 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.39 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 98.39 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 98.38 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 98.37 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 98.37 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.37 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 98.36 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.36 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 98.35 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.35 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 98.35 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.35 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.34 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 98.34 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 98.34 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 98.33 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.33 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.31 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 98.31 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 98.3 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 98.29 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.29 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.29 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 98.29 | |
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 98.29 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 98.29 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 98.28 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 98.27 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 98.27 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 98.25 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.25 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 98.25 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 98.23 | |
| PRK05868 | 372 | hypothetical protein; Validated | 98.23 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.23 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 98.22 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.22 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.21 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 98.21 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 98.2 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 98.2 | |
| KOG2415 | 621 | consensus Electron transfer flavoprotein ubiquinon | 98.2 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 98.2 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 98.19 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 98.19 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 98.19 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.18 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.18 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 98.18 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 98.17 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 98.17 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.17 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.17 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 98.17 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 98.17 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 98.16 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.16 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 98.16 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 98.16 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 98.16 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 98.15 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.14 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.14 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.14 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.13 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.13 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 98.12 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.12 | |
| PRK06116 | 450 | glutathione reductase; Validated | 98.12 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 98.12 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 98.11 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 98.11 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 98.1 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.09 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 98.09 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 98.08 | |
| PRK07121 | 492 | hypothetical protein; Validated | 98.08 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 98.08 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 98.08 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 98.08 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.08 | |
| PLN02487 | 569 | zeta-carotene desaturase | 98.07 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 98.07 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 98.07 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.07 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.06 | |
| PRK06370 | 463 | mercuric reductase; Validated | 98.06 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 98.05 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.04 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 98.04 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.04 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 98.03 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 98.03 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.03 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.02 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 98.02 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.02 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 98.02 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 98.02 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 98.01 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 98.01 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 98.0 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 98.0 | |
| KOG2820 | 399 | consensus FAD-dependent oxidoreductase [General fu | 98.0 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.99 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 97.98 | |
| PLN02507 | 499 | glutathione reductase | 97.98 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.98 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.98 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.97 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.97 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.97 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 97.96 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.96 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.96 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.95 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 97.95 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.95 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.95 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 97.94 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.94 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.94 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.94 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.94 | |
| KOG2665 | 453 | consensus Predicted FAD-dependent oxidoreductase [ | 97.94 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 97.93 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 97.92 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.92 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.92 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.92 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.92 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.91 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.91 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 97.9 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 97.9 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 97.89 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.89 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.88 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 97.87 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.87 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.86 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 97.85 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 97.85 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.85 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 97.84 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 97.84 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.83 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.83 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.83 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.82 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 97.82 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 97.82 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.8 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.8 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.8 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.79 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 97.79 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.79 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.78 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.77 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 97.77 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.77 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 97.76 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.76 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.76 | |
| KOG1336 | 478 | consensus Monodehydroascorbate/ferredoxin reductas | 97.75 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.74 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.74 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 97.74 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 97.74 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.73 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 97.73 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 97.73 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.72 | |
| KOG0029 | 501 | consensus Amine oxidase [Secondary metabolites bio | 97.7 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.7 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.7 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 97.7 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 97.69 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 97.69 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.68 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.67 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.67 | |
| PLN02785 | 587 | Protein HOTHEAD | 97.67 | |
| PLN02661 | 357 | Putative thiazole synthesis | 97.65 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.65 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 97.64 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 97.64 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.62 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.62 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 97.61 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.6 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.6 | |
| KOG1399 | 448 | consensus Flavin-containing monooxygenase [Seconda | 97.6 | |
| PLN02546 | 558 | glutathione reductase | 97.59 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 97.59 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 97.59 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.58 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 97.58 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.57 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.56 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.56 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.55 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 97.55 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.55 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.55 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.54 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 97.54 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 97.54 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 97.51 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.51 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 97.51 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 97.51 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 97.47 | |
| KOG2853 | 509 | consensus Possible oxidoreductase [General functio | 97.47 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.46 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.44 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.43 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.43 | |
| KOG4254 | 561 | consensus Phytoene desaturase [Coenzyme transport | 97.43 | |
| KOG0404 | 322 | consensus Thioredoxin reductase [Posttranslational | 97.4 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.4 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.39 | |
| KOG2844 | 856 | consensus Dimethylglycine dehydrogenase precursor | 97.36 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 97.34 | |
| PLN02268 | 435 | probable polyamine oxidase | 97.34 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.33 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.33 | |
| KOG2404 | 477 | consensus Fumarate reductase, flavoprotein subunit | 97.32 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 97.32 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.31 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 97.29 | |
| PLN02568 | 539 | polyamine oxidase | 97.29 | |
| PLN02985 | 514 | squalene monooxygenase | 97.27 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.26 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.26 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.26 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.25 | |
| KOG0685 | 498 | consensus Flavin-containing amine oxidase [Coenzym | 97.24 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.22 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 97.2 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 97.19 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 97.19 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.18 | |
| KOG0399 | 2142 | consensus Glutamate synthase [Amino acid transport | 97.17 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.17 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 97.14 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.14 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.13 | |
| PF14721 | 133 | AIF_C: Apoptosis-inducing factor, mitochondrion-as | 97.1 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 97.1 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.1 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.06 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.05 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.04 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 97.0 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 96.97 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 96.97 | |
| KOG1276 | 491 | consensus Protoporphyrinogen oxidase [Coenzyme tra | 96.95 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 96.94 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.92 | |
| PLN02676 | 487 | polyamine oxidase | 96.9 | |
| PLN02985 | 514 | squalene monooxygenase | 96.9 | |
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 96.89 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.89 | |
| KOG2495 | 491 | consensus NADH-dehydrogenase (ubiquinone) [Energy | 96.86 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.86 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.86 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.85 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 96.85 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 96.85 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 96.85 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 96.83 | |
| KOG2311 | 679 | consensus NAD/FAD-utilizing protein possibly invol | 96.82 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 96.77 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.76 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 96.76 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 96.75 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.75 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.73 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 96.73 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 96.73 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 96.73 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.73 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 96.71 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 96.71 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 96.71 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 96.7 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 96.66 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.65 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.62 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.58 | |
| KOG1335 | 506 | consensus Dihydrolipoamide dehydrogenase [Energy p | 96.57 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 96.57 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.55 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.5 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.48 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.45 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.43 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.43 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.42 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 96.41 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.37 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 96.37 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 96.35 | |
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 96.27 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 96.25 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 96.23 | |
| PLN02815 | 594 | L-aspartate oxidase | 96.2 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.19 | |
| PLN03000 | 881 | amine oxidase | 96.14 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 96.02 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 96.01 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.0 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 95.99 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 95.98 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 95.97 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 95.95 | |
| PF14691 | 111 | Fer4_20: Dihydroprymidine dehydrogenase domain II, | 95.88 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 95.82 | |
| KOG1298 | 509 | consensus Squalene monooxygenase [Lipid transport | 95.78 | |
| KOG1346 | 659 | consensus Programmed cell death 8 (apoptosis-induc | 95.74 | |
| KOG2614 | 420 | consensus Kynurenine 3-monooxygenase and related f | 95.72 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 95.69 | |
| KOG2755 | 334 | consensus Oxidoreductase [General function predict | 95.61 | |
| KOG2852 | 380 | consensus Possible oxidoreductase [General functio | 95.6 | |
| PLN02976 | 1713 | amine oxidase | 95.55 | |
| KOG2960 | 328 | consensus Protein involved in thiamine biosynthesi | 95.49 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 95.45 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 95.44 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 95.43 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 95.41 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 95.26 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 95.23 | |
| PF02852 | 110 | Pyr_redox_dim: Pyridine nucleotide-disulphide oxid | 95.22 |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-58 Score=466.65 Aligned_cols=391 Identities=27% Similarity=0.428 Sum_probs=337.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|||||||+||++||.+|++.++ +.+|+||+++++.||.+|++++.++........ .....+|
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~-~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~-------------~~~~~~~ 67 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGF-TGELHLFSDERHLPYERPPLSKSMLLEDSPQLQ-------------QVLPANW 67 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCC-CCCEEEeCCCCCCCCCCCCCCHHHHCCCCcccc-------------ccCCHHH
Confidence 45689999999999999999999987 789999999999999999998866543221111 1234678
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+.+.+++++.++.|..+|++.+.+.+.+|.++.||+||||||+.|..+| .++...++++++++..++.++.+.+..+++
T Consensus 68 ~~~~~i~~~~g~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p-~~~~~~~~v~~~~~~~da~~l~~~~~~~~~ 146 (396)
T PRK09754 68 WQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLP-LLDALGERCFTLRHAGDAARLREVLQPERS 146 (396)
T ss_pred HHHCCCEEEcCCEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCC-CCCcCCCCEEecCCHHHHHHHHHHhhcCCe
Confidence 8899999999989999999999999999999999999999999987544 344446778999999999999888888899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
++|||+|++|+|+|..|+++|.+|+++++.++++++.+++...+.+.+.+++.||++++ ++.++++.. ++. ..+.+
T Consensus 147 vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~V~~i~~--~~~-~~v~l 222 (396)
T PRK09754 147 VVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILL-NNAIEHVVD--GEK-VELTL 222 (396)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEe-CCeeEEEEc--CCE-EEEEE
Confidence 99999999999999999999999999999999998778999999999999999999999 999999974 233 35778
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
.+|++++||.||+++|.+|++.+++.+|++.+ ++|.||+++||+.|||||+|||+..+.. .|...+.++|..|..||+
T Consensus 223 ~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~-~gi~vd~~~~ts~~~IyA~GD~a~~~~~-~g~~~~~~~~~~A~~qg~ 300 (396)
T PRK09754 223 QSGETLQADVVIYGIGISANDQLAREANLDTA-NGIVIDEACRTCDPAIFAGGDVAITRLD-NGALHRCESWENANNQAQ 300 (396)
T ss_pred CCCCEEECCEEEECCCCChhhHHHHhcCCCcC-CCEEECCCCccCCCCEEEccceEeeeCC-CCCEEEECcHHHHHHHHH
Confidence 89999999999999999999989888998875 6799999999999999999999987765 677777889999999999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCc-EEEEccCC-CcEEEEEEECCEEEEEEeccCCHHH
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-TIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEE 447 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (489)
.+|.||++. ..+|..+||||+++|+.. ++++|....+ .+..++.+ .++..+|+++|+|+|+++ +|++++
T Consensus 301 ~aa~ni~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~ 371 (396)
T PRK09754 301 IAAAAMLGL-PLPLLPPPWFWSDQYSDN-------LQFIGDMRGDDWLCRGNPETQKAIWFNLQNGVLIGAVT-LNQGRE 371 (396)
T ss_pred HHHHHhcCC-CCCCCCCCceEEEeCCcc-------EEEeeCCCCCEEEEecCCCCceEEEEEeeCCEEEEEEE-ECCHHH
Confidence 999999964 567889999999999876 8899975443 44566544 457778888999999996 899999
Q ss_pred hHHHHHHHhcCCCCChhhhcCCC
Q 011267 448 FQLLPTLARSQPFVDKAKLQQAS 470 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+..++++++.+.++++..+.++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~ 394 (396)
T PRK09754 372 IRPIRKWIQSGKTFDAKLLIDEN 394 (396)
T ss_pred HHHHHHHHHCCCCCCHHHhcCcc
Confidence 99999999999999988887763
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-55 Score=425.02 Aligned_cols=402 Identities=45% Similarity=0.755 Sum_probs=363.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|++|..|+.++++.++ ..+++++.++.++||.|+.|++.++..... ...+..+||
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~-~~ri~l~~~~~~~pydr~~Ls~~~~~~~~~---------------~a~r~~e~Y 137 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGF-TERIALVKREYLLPYDRARLSKFLLTVGEG---------------LAKRTPEFY 137 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCC-CcceEEEeccccCcccchhcccceeecccc---------------ccccChhhH
Confidence 6789999999999999999999997 789999999999999999999855433222 135678899
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcE
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (489)
++.+|++++++.|+++|...+++.+.+|+.+.|++|+||||+.+.. ++.+|.+.+++.++++.++++.+...+....++
T Consensus 138 ke~gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~-l~~pG~~~~nv~~ireieda~~l~~~~~~~~~v 216 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKT-LDIPGVELKNVFYLREIEDANRLVAAIQLGGKV 216 (478)
T ss_pred hhcCceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCcccc-CCCCCccccceeeeccHHHHHHHHHHhccCceE
Confidence 9999999999999999999999999999999999999999998875 556888899999999999999998888888999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+++|+|++|+|+|..|...+.+||+|++.+.++++.+.+.+.+.+.++++++||+++. ++.+.+++..++|++..|.+.
T Consensus 217 V~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~-~t~~s~l~~~~~Gev~~V~l~ 295 (478)
T KOG1336|consen 217 VCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYL-GTVVSSLEGNSDGEVSEVKLK 295 (478)
T ss_pred EEECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEE-ecceeecccCCCCcEEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999 999999998888999999999
Q ss_pred CCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
+|++++||+||+++|.+|++.+++. +..++ .|+|.||+++||++|||||+||++.++.+.++...+++|++.|+..|+
T Consensus 296 dg~~l~adlvv~GiG~~p~t~~~~~-g~~~~~~G~i~V~~~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 296 DGKTLEADLVVVGIGIKPNTSFLEK-GILLDSKGGIKVDEFFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARASGR 374 (478)
T ss_pred cCCEeccCeEEEeeccccccccccc-cceecccCCEeehhceeeccCCcccccceeecccccccccccchHHHHHHHHHH
Confidence 9999999999999999999999998 66665 688999999999999999999999999999988888999999999999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCcEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHHh
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEF 448 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~ 448 (489)
.+...+.......+++.||||+..|+.. |+++|...++.+..|+.+ .+|..||++ ++.+++.+..+..+..
T Consensus 375 ~av~ai~~~~~~~~~~lPyf~t~~f~~~-------~~~~G~g~~~~v~~G~~e~~~f~ay~~k-~~~v~a~~~~g~~~~~ 446 (478)
T KOG1336|consen 375 QAVKAIKMAPQDAYDYLPYFYTRFFSLS-------WRFAGDGVGDVVLFGDLEPGSFGAYWIK-GDKVGAVAEGGRDEEV 446 (478)
T ss_pred hhhhhhhccCcccccccchHHHHHhhhh-------ccccCcCccceeeecccccccceeeEee-ccEEEEEeccCCChHH
Confidence 8776665433334789999999999875 899999888888888876 568999999 8889988878888889
Q ss_pred HHHHHHHhcCCCCChhhhcCCCcHHHHHHHH
Q 011267 449 QLLPTLARSQPFVDKAKLQQASSVEEALEIA 479 (489)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 479 (489)
..+..++++++.+..-++.+..+.+.+++..
T Consensus 447 ~~~a~l~~~~~~v~~~~~~~~~~~~~~~~~~ 477 (478)
T KOG1336|consen 447 SQFAKLARQGPEVTSLKLLSKSGDSFWLTIL 477 (478)
T ss_pred HHHHHHHhcCCcchhhhhccccchhhHHhhc
Confidence 9999999999999988888888888887653
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=422.82 Aligned_cols=377 Identities=21% Similarity=0.357 Sum_probs=312.4
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHC
Q 011267 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (489)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (489)
|||||||+||++||.+|++.+..+.+||||+++++++|.++.++. ++... .....+ .....+|+++.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~-~l~g~-~~~~~l-----------~~~~~~~~~~~ 67 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSS-VLQGE-ADLDDI-----------TLNSKDWYEKH 67 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccH-HHCCC-CCHHHc-----------cCCCHHHHHHC
Confidence 699999999999999999986446799999999999999998876 44321 111122 23467899999
Q ss_pred CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEE
Q 011267 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVi 213 (489)
+++++++++|+.||++++.|.+.+|.++.||+||||||+.|+ .|.++|.+.++++.++++++++.+++....+++++||
T Consensus 68 gv~~~~g~~V~~Id~~~k~V~~~~g~~~~yD~LVlATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~i~~~~~~~k~vvVV 146 (785)
T TIGR02374 68 GITLYTGETVIQIDTDQKQVITDAGRTLSYDKLILATGSYPF-ILPIPGADKKGVYVFRTIEDLDAIMAMAQRFKKAAVI 146 (785)
T ss_pred CCEEEcCCeEEEEECCCCEEEECCCcEeeCCEEEECCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHHhhcCCeEEEE
Confidence 999999999999999999999999999999999999999987 4667887788999999999999998888888999999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc
Q 011267 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS 293 (489)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~ 293 (489)
|+|++|+|+|..|+++|.+|+++++.++++++.+++.....+.+.+++.||++++ ++.++++.. ++.+..|.+++|+
T Consensus 147 GgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~-~~~v~~i~~--~~~~~~v~~~dG~ 223 (785)
T TIGR02374 147 GGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLL-EKDTVEIVG--ATKADRIRFKDGS 223 (785)
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEe-CCceEEEEc--CCceEEEEECCCC
Confidence 9999999999999999999999999999998889999999999999999999999 999999973 3456678899999
Q ss_pred EEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHH
Q 011267 294 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 373 (489)
Q Consensus 294 ~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~ 373 (489)
++++|.||+++|.+|++++++.+|++.+ ++|.||++|||++|+|||+|||+..+...++ .+..|..||+.+|.
T Consensus 224 ~i~~D~Vi~a~G~~Pn~~la~~~gl~~~-ggI~Vd~~~~Ts~p~IyA~GD~a~~~~~~~g------l~~~a~~qa~vaA~ 296 (785)
T TIGR02374 224 SLEADLIVMAAGIRPNDELAVSAGIKVN-RGIIVNDSMQTSDPDIYAVGECAEHNGRVYG------LVAPLYEQAKVLAD 296 (785)
T ss_pred EEEcCEEEECCCCCcCcHHHHhcCCccC-CCEEECCCcccCCCCEEEeeecceeCCcccc------cHHHHHHHHHHHHH
Confidence 9999999999999999999999999887 7899999999999999999999987665433 56778999999999
Q ss_pred HHhcCCCCCCCcCCceee-ecccccCCCcceeeeeecCCcC-----cEEEEccCCCcEEEEEEECCEEEEEEeccCCHHH
Q 011267 374 ALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG-----ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEE 447 (489)
Q Consensus 374 ~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~G~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (489)
||++....+|...+.... +.+++. +.++|.... .+.........|.++++++++|+|+++ +++..+
T Consensus 297 ni~g~~~~~~~~~~~~~~lk~~g~~-------v~s~G~~~~~~~~~~~~~~d~~~~~y~kl~~~~~rLlGavl-vgd~~~ 368 (785)
T TIGR02374 297 HICGVECEEYEGSDLSAKLKLLGVD-------VWSAGDAQETERTTSIKIYDEQKGIYKKLVLSDDKLLGAVL-FGDTSD 368 (785)
T ss_pred HhcCCCCcCCCCCccceEEEECCcc-------eEecccCCCCCCcEEEEEEcCCCCEEEEEEEECCEEEEEEE-ECCHHH
Confidence 999754355655443221 233322 344554321 122222223558899999999999997 788899
Q ss_pred hHHHHHHHhcCCCCC
Q 011267 448 FQLLPTLARSQPFVD 462 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~ 462 (489)
...+.+++.++..+.
T Consensus 369 ~~~L~~li~~~~~l~ 383 (785)
T TIGR02374 369 YGRLLDMVLKQADIS 383 (785)
T ss_pred HHHHHHHHHcCCCCC
Confidence 999999998776554
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=420.31 Aligned_cols=381 Identities=19% Similarity=0.331 Sum_probs=308.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++|||||+|+||+.+|.+|++.+. ++.+||||+++++++|.++.++. ++... ....+ .....+|
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~-~~~~~--~~~~l-----------~~~~~~~ 68 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSS-YFSHH--TAEEL-----------SLVREGF 68 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchH-hHcCC--CHHHc-----------cCCCHHH
Confidence 4589999999999999999988642 35689999999999999998876 33221 11112 2345788
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+++.+++++.+++|+.+|++.+.|.+.+|.++.||+||||||++|+ .|+++|.+.++++.+++.+++.+++.....+++
T Consensus 69 ~~~~gI~~~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~-~p~ipG~~~~~v~~~rt~~d~~~l~~~~~~~k~ 147 (847)
T PRK14989 69 YEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPW-IPPIKGSETQDCFVYRTIEDLNAIEACARRSKR 147 (847)
T ss_pred HHhCCCEEEcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHHhcCCe
Confidence 9999999999989999999999999999999999999999999987 466778777889999999999999888888899
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
++|||+|++|+|+|..|.++|.+|+++++.++++++.+++..++.+.+.++++||++++ ++.++++..++++....+.+
T Consensus 148 vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~-~~~v~~I~~~~~~~~~~v~~ 226 (847)
T PRK14989 148 GAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHT-SKNTLEIVQEGVEARKTMRF 226 (847)
T ss_pred EEEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEc-CCeEEEEEecCCCceEEEEE
Confidence 99999999999999999999999999999999998889999999999999999999999 99999997543345567888
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
++|+++++|.||+|+|++|++++++.+|++.+ +|+|.||++|||++|+|||+|||+......++ .+..|..+|
T Consensus 227 ~dG~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts~p~IYAiGD~a~~~~~~~g------l~~~a~~~a 300 (847)
T PRK14989 227 ADGSELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------LVAPGYKMA 300 (847)
T ss_pred CCCCEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECCCCcCCCCCEEEeecceeEcCcccc------cHHHHHHHH
Confidence 99999999999999999999999999999876 57899999999999999999999987655433 566799999
Q ss_pred HHHHHHHhcCCCCCCCcCCce-eeecccccCCCcceeeeeecCCcCc------EEEEccCCCcEEEEEEE--CCEEEEEE
Q 011267 369 QHCIKALLSAQTHTYDYLPYF-YSRVFEYEGSPRKVWWQFFGDNVGE------TIEIGNFDPKIATFWID--SGKLKGVL 439 (489)
Q Consensus 369 ~~~a~~l~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~G~~~~~------~~~~~~~~~~~~~~~~~--~~~~~g~~ 439 (489)
+.+|.||++.. ..|...... -.+.+++. +..+|...+. ..........|.++.++ +++|+|++
T Consensus 301 ~vaa~~i~g~~-~~~~g~~~~~~lk~~G~~-------v~s~G~~~~~~~~~~~~~~~~~~~~~y~Klv~~~~~~~LlGa~ 372 (847)
T PRK14989 301 QVAVDHLLGSE-NAFEGADLSAKLKLLGVD-------VGGIGDAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAV 372 (847)
T ss_pred HHHHHHhcCCC-cCCCCcccceEEEECCcc-------eEecccccCCCCCceeEEEEcCCCCEEEEEEEECCCCEEEEEE
Confidence 99999998643 444432221 11223221 3445533221 22233333557787775 46999999
Q ss_pred eccCCHHHhHHHHHHHhcCCCCC
Q 011267 440 VESGSPEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~ 462 (489)
+ +|+..+...+..++.++..++
T Consensus 373 l-vGd~~~~~~l~~~~~~~~~l~ 394 (847)
T PRK14989 373 L-VGDTSDYGNLLQLVLNAIELP 394 (847)
T ss_pred E-ECCHHHHHHHHHHHHcCCCCc
Confidence 7 788888888888887776654
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=387.54 Aligned_cols=361 Identities=23% Similarity=0.355 Sum_probs=288.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
+++|||||||+||+++|++|++.+. +.+|+||+++++.+|++|.+++.+. . ...+..+. .....+++
T Consensus 2 ~~~vvIiG~G~AG~~~a~~lr~~~~-~~~Itvi~~~~~~~y~~~~l~~~~~-~-~~~~~~~~----------~~~~~~~~ 68 (377)
T PRK04965 2 SNGIVIIGSGFAARQLVKNIRKQDA-HIPITLITADSGDEYNKPDLSHVFS-Q-GQRADDLT----------RQSAGEFA 68 (377)
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCcCcCcCcHHHh-C-CCCHHHhh----------cCCHHHHH
Confidence 3589999999999999999999875 7899999999999999998876332 1 22221110 11245678
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcE
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (489)
++++++++.+++|+.+|++.+.+.+ ++.++.||+||+|||+.|. .|.++|... ++.++++.++..+...+..++++
T Consensus 69 ~~~gv~~~~~~~V~~id~~~~~v~~-~~~~~~yd~LVlATG~~~~-~p~i~G~~~--v~~~~~~~~~~~~~~~~~~~~~v 144 (377)
T PRK04965 69 EQFNLRLFPHTWVTDIDAEAQVVKS-QGNQWQYDKLVLATGASAF-VPPIPGREL--MLTLNSQQEYRAAETQLRDAQRV 144 (377)
T ss_pred HhCCCEEECCCEEEEEECCCCEEEE-CCeEEeCCEEEECCCCCCC-CCCCCCCce--EEEECCHHHHHHHHHHhhcCCeE
Confidence 8899999998899999999888886 5678999999999999986 455566432 77888888888888877788999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+|||+|++|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.++++..++ +. ..+.+.
T Consensus 145 vViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~-~~~v~~i~~~~-~~-~~v~~~ 221 (377)
T PRK04965 145 LVVGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLL-KSQLQGLEKTD-SG-IRATLD 221 (377)
T ss_pred EEECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEE-CCeEEEEEccC-CE-EEEEEc
Confidence 9999999999999999999999999999999998878999999999999999999999 99999998532 22 357788
Q ss_pred CCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHH
Q 011267 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 370 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 370 (489)
+|++++||.||+|+|.+|++++++.+|++.++ ++.||+++||+.|||||+|||+..+... ...|..|..||+.
T Consensus 222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~~-gi~vd~~l~ts~~~VyA~GD~a~~~~~~------~~~~~~a~~~g~~ 294 (377)
T PRK04965 222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVNR-GIVVDSYLQTSAPDIYALGDCAEINGQV------LPFLQPIQLSAMA 294 (377)
T ss_pred CCcEEECCEEEECcCCCcchHHHHHCCCCcCC-CEEECCCcccCCCCEEEeeecEeECCce------eehHHHHHHHHHH
Confidence 99999999999999999999999999998874 6999999999999999999999865432 2356778999999
Q ss_pred HHHHHhcCCCCCCCcCCceee-ecccccCCCcceeeeeecCCcC---cEEEEccCCCcEEEEEEECCEEEEEEeccCCHH
Q 011267 371 CIKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESGSPE 446 (489)
Q Consensus 371 ~a~~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 446 (489)
+|+||++. ...|...+..++ +.++++ +.++|...+ .+....+.++.+.++++++|+|+|++++.+...
T Consensus 295 ~a~n~~g~-~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~g~~~~ 366 (377)
T PRK04965 295 LAKNLLGQ-NTPLKLPAMLVKVKTPELP-------LQLAGETQRQDLRWQINAESQGMVAKGVDEAGQLRAFVVSEDRMK 366 (377)
T ss_pred HHHHhcCC-CcccccCCccEEEecCcee-------eEECCCCCCCCceEEEEeCCCCeEEEEEccCCcEEEEEEEChhHH
Confidence 99999964 355665444322 344433 667777543 222222223557888899999999998544343
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=397.57 Aligned_cols=382 Identities=23% Similarity=0.379 Sum_probs=326.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
.+.++||||.|+||..+..++++......+||++..+++.+|+|..|+. ++.+ .....++ .....+|
T Consensus 2 ~k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~-vl~~-~~~~edi-----------~l~~~dw 68 (793)
T COG1251 2 KKQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSS-VLAG-EKTAEDI-----------SLNRNDW 68 (793)
T ss_pred CceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeecc-ccCC-CccHHHH-----------hccchhh
Confidence 4578999999999999999999965556699999999999999999987 4433 2222222 2456799
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
|++++++++.+.+|+.||++++.|+++.|.++.||+||+||||.|+.+| +||.+.++++.+++.+|...+....+..++
T Consensus 69 y~~~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~P-iPG~~~~~v~~~R~i~D~~am~~~ar~~~~ 147 (793)
T COG1251 69 YEENGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILP-IPGSDLPGVFVYRTIDDVEAMLDCARNKKK 147 (793)
T ss_pred HHHcCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccC-CCCCCCCCeeEEecHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999998655 899999999999999999999888667778
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
.+|||||..|+|+|..|...|.++++++..+.++.+++|+.....+++.++++|+++++ +...+++.. .+++..+++
T Consensus 148 avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l-~~~t~ei~g--~~~~~~vr~ 224 (793)
T COG1251 148 AVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLL-EKNTEEIVG--EDKVEGVRF 224 (793)
T ss_pred cEEEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeec-ccchhhhhc--CcceeeEee
Confidence 89999999999999999999999999999999999999999999999999999999999 999999873 677889999
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
+||..+++|.||+|+|++||+++...+|+.+++ ||+||++|||++|+|||+|+|+.+....+|.. .-+.+|++
T Consensus 225 ~DG~~i~ad~VV~a~GIrPn~ela~~aGlavnr-GIvvnd~mqTsdpdIYAvGEcae~~g~~yGLV------aP~yeq~~ 297 (793)
T COG1251 225 ADGTEIPADLVVMAVGIRPNDELAKEAGLAVNR-GIVVNDYMQTSDPDIYAVGECAEHRGKVYGLV------APLYEQAK 297 (793)
T ss_pred cCCCcccceeEEEecccccccHhHHhcCcCcCC-CeeecccccccCCCeeehhhHHHhcCccceeh------hHHHHHHH
Confidence 999999999999999999999999999999985 99999999999999999999999988887754 34788999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCc----C-cEEEEccCCCcEEEEEEECCEEEEEEeccCC
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV----G-ETIEIGNFDPKIATFWIDSGKLKGVLVESGS 444 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~----~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 444 (489)
.+|.++.+.....|..... +..++.+|.. +-..|+.. . .+++.....+.|.++.+++|+|+|++| .|+
T Consensus 298 v~a~hl~~~~~~~y~gsv~--stkLKv~Gvd----l~S~GD~~e~~~~~~iv~~D~~~~iYKrlvL~dd~IvgavL-~GD 370 (793)
T COG1251 298 VLADHLCGGEAEAYEGSVT--STKLKVSGVD----VFSAGDFQETEGAESIVFRDEQRGIYKKLVLKDDKIVGAVL-YGD 370 (793)
T ss_pred HHHHHhccCcccccccccc--hhhhcccccc----eeeccchhhcCCCceEEEecccccceeEEEEeCCeEEEEEE-Eee
Confidence 9999998765444433211 2344445532 33445432 1 344454445779999999999999997 899
Q ss_pred HHHhHHHHHHHhcCCCCC
Q 011267 445 PEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~ 462 (489)
..+-..|..++.++..++
T Consensus 371 t~d~~~l~~li~~~~~~s 388 (793)
T COG1251 371 TSDGGWLLDLILKGADIS 388 (793)
T ss_pred cccchHHHHHHhcCCCcc
Confidence 999999999998887775
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-45 Score=372.97 Aligned_cols=399 Identities=20% Similarity=0.281 Sum_probs=287.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
++|||||||+||++||.+|++.+. +.+|+|||++++++|.++.++. ++........... ......+++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~-~~~I~li~~~~~~~~~~~~lp~-~~~~~~~~~~~~~----------~~~~~~~~~ 69 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-YIGEVVEDRKYAL----------AYTPEKFYD 69 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCC-CCCEEEEECCCCcccccCCcch-hhcCccCCHHHcc----------cCCHHHHHH
Confidence 489999999999999999999864 7899999999999888766543 2211000000000 012245567
Q ss_pred HCCcEEEeCCcEEEEeCCCCEEEeCCC---e--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc-
Q 011267 132 EKGIEMIYQDPVTSIDIEKQTLITNSG---K--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~~~~~v~~~~g---~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~- 205 (489)
+.+++++.+++|++||++++.|.+.++ . ++.||+||||||++|.. |.. +.+++++++++.+++.+.+.+.
T Consensus 70 ~~~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~-~~~---~~~~~~~~~~~~~~~~l~~~l~~ 145 (438)
T PRK13512 70 RKQITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANS-LGF---ESDITFTLRNLEDTDAIDQFIKA 145 (438)
T ss_pred hCCCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCC-CCC---CCCCeEEecCHHHHHHHHHHHhh
Confidence 789999998999999999999888653 2 47899999999999864 332 2456788888888887776543
Q ss_pred -CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 -~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
.+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++ +++|++++. .
T Consensus 146 ~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~-~~d~~~~~~l~~~l~~~gI~i~~-~~~v~~i~~---~-- 218 (438)
T PRK13512 146 NQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK-LMDADMNQPILDELDKREIPYRL-NEEIDAING---N-- 218 (438)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch-hcCHHHHHHHHHHHHhcCCEEEE-CCeEEEEeC---C--
Confidence 468999999999999999999999999999999998887 48999999999999999999999 999999962 1
Q ss_pred EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHH
Q 011267 285 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 363 (489)
Q Consensus 285 ~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~ 363 (489)
.+++++|+++++|.|++++|++||+++++..|++.+ +|+|.||+++||++|||||+|||+.......+..........
T Consensus 219 -~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~ 297 (438)
T PRK13512 219 -EVTFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKFETNVPNIYAIGDIITSHYRHVDLPASVPLAWG 297 (438)
T ss_pred -EEEECCCCEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECCCcccCCCCEEEeeeeEEeeeccCCCceecccchH
Confidence 467788889999999999999999999999999875 467999999999999999999999754322222222234445
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CcCCceeeecccccCCCcceeeeeecCCcCc-------EEEE---------ccCCCcEE
Q 011267 364 ARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIEI---------GNFDPKIA 426 (489)
Q Consensus 364 A~~~g~~~a~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~~~~---------~~~~~~~~ 426 (489)
|..+|+.+|+||++.....+ ...+..+...++.. +..+|....+ .... .+....+.
T Consensus 298 A~~~a~~~a~ni~g~~~~~~~~~~~~~~~~~~~~~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 370 (438)
T PRK13512 298 AHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLHL 370 (438)
T ss_pred HHHHHHHHHHHhcCCCccccCCcccceEEEEcCce-------EEeecCCHHHHccCCcEEEEEecCCcCCCcCCCceEEE
Confidence 88899999999986432233 22222223333322 3334433210 0000 01112355
Q ss_pred EEEEE--CCEEEEEEeccCC-HHHhHHH-HHHHhcCCCCC-hhh--hcCCCcHH---HHHHHHHc
Q 011267 427 TFWID--SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVD-KAK--LQQASSVE---EALEIARA 481 (489)
Q Consensus 427 ~~~~~--~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~---e~~~~~~~ 481 (489)
++.++ +++|+|+++++.+ +.++... ..++..+.+++ ... +..||+++ +.+..+++
T Consensus 371 klv~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~~~~~~ 435 (438)
T PRK13512 371 RVYYDTSNRKILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAYAPPYSHPKDLINMIGY 435 (438)
T ss_pred EEEEECCCCeEEEEEEEccccHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCccccHHHHHHH
Confidence 66553 5999999986654 5665544 55678888775 332 45566654 55555443
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-45 Score=374.43 Aligned_cols=398 Identities=21% Similarity=0.287 Sum_probs=292.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|||||||+||++||..|++.+. +.+|+|||+++.+.|..+.++. ++......+..+ .....+++++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~-~~~Vtli~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~ 68 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNK-ELEITVYEKTDIVSFGACGLPY-FVGGFFDDPNTM-----------IARTPEEFIK 68 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCC-CCcEEEEECCCcceeecCCCce-EeccccCCHHHh-----------hcCCHHHHHH
Confidence 79999999999999999999874 6799999999988777554432 221111111111 1345677888
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCC---CeEEe--eCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc--
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~---g~~i~--yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~-- 205 (489)
.+++++.+++|+.+|++.+.+.+.+ +..+. ||+||+|||++|. .|..+|.+.++++++++..+..++.+.+.
T Consensus 69 ~gv~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~-~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~ 147 (444)
T PRK09564 69 SGIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPI-IPPIKNINLENVYTLKSMEDGLALKELLKDE 147 (444)
T ss_pred CCCeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhc
Confidence 9999998899999999998888754 55666 9999999999986 45667766678888888888877776653
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|||+|++|+|+|..+++.|.+|+++++.+++++..+++++.+.+.+.+++.||++++ +++|+++.. ++.+.
T Consensus 148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~-~~~v~~i~~--~~~~~ 224 (444)
T PRK09564 148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHL-NEFVKSLIG--EDKVE 224 (444)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEc-CCEEEEEec--CCcEE
Confidence 468999999999999999999999999999999998887668999999999999999999999 999999963 34444
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHH
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 364 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A 364 (489)
.+.+++ .+++||.+|+|+|.+|++++++++|++.+ +|+|.||+++||+.|||||+|||+..+....+.......+..|
T Consensus 225 ~v~~~~-~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A 303 (444)
T PRK09564 225 GVVTDK-GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGETSIENIYAAGDCATIYNIVSNKNVYVPLATTA 303 (444)
T ss_pred EEEeCC-CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECCCcccCCCCEEEeeeEEEEEeccCCCeeeccchHHH
Confidence 555554 47999999999999999999999999864 5779999999999999999999998765444443334577789
Q ss_pred HHHHHHHHHHHhcCCCCCCCc-CCceeeecccccCCCcceeeeeecCCcCc---------EEEEc---------cCCCcE
Q 011267 365 RQSAQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIG---------NFDPKI 425 (489)
Q Consensus 365 ~~~g~~~a~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~G~~~~~---------~~~~~---------~~~~~~ 425 (489)
.+||+.+|.||++.. ..++. .+......++.. +..+|....+ ..... +....|
T Consensus 304 ~~qg~~~a~ni~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 375 (444)
T PRK09564 304 NKLGRMVGENLAGRH-VSFKGTLGSACIKVLDLE-------AARTGLTEEEAKKLGIDYKTVFIKDKNHTNYYPGQEDLY 375 (444)
T ss_pred HHHHHHHHHHhcCCC-CCCCCcccceEEEECCEE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEE
Confidence 999999999999643 22321 111111122221 3445543210 01110 111235
Q ss_pred EEEEE--ECCEEEEEEeccCC-HHH-hHHHHHHHhcCCCCC-hhh-hcC-CCcHHHHH
Q 011267 426 ATFWI--DSGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD-KAK-LQQ-ASSVEEAL 476 (489)
Q Consensus 426 ~~~~~--~~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~-~~~-~~~~~e~~ 476 (489)
.++.+ ++++|+|+++++.+ +.+ +..+..+|.++.+++ ... ... +|++.|+.
T Consensus 376 ~klv~~~~~~~ilG~~~~g~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~ 433 (444)
T PRK09564 376 VKLIYEADTKVILGGQIIGKKGAVLRIDALAVAIYAKLTTQELGMMDFCYAPPFARTW 433 (444)
T ss_pred EEEEEECCCCeEEeEEEEcCccHHHHHHHHHHHHHCCCCHHHHhhcccccCCCCCCCc
Confidence 66655 36999999975553 545 445566788888776 222 222 37776543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-43 Score=349.77 Aligned_cols=396 Identities=24% Similarity=0.370 Sum_probs=280.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCCC-----CCC------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPL-----DKK------------ 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~~-----~~~------------ 107 (489)
+..||+||||+|+||..||.++++.|. + +.+||+.+.+.-. -+--+|.++... ...
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~-k--valvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~ 78 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGL-K--VALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP 78 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCC-C--EEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence 467999999999999999999999997 2 9999999532210 011122111100 000
Q ss_pred CCCCCCCccc---cCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC--CeEEeeCcEEecCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTC---VGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS--GKLLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 108 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~--g~~i~yd~lvlATG~~~~~~p~~~g 182 (489)
..++...... ...........++++++++++.+ +..-++ .++|...+ .+++.++++|||||++|..+| .++
T Consensus 79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G-~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~-~~~ 154 (454)
T COG1249 79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRG-EARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPP-GPG 154 (454)
T ss_pred CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEE-EEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCC-CCC
Confidence 0011000000 00000111233455679999986 554444 56676665 478999999999999997544 334
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
+++..++ +.+........+++++|||||++|+|+|..++++|.+||++++.+++|+. +|+++++.+.+.|++.
T Consensus 155 --~~~~~~~----~s~~~l~~~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~-~D~ei~~~~~~~l~~~ 227 (454)
T COG1249 155 --IDGARIL----DSSDALFLLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPG-EDPEISKELTKQLEKG 227 (454)
T ss_pred --CCCCeEE----echhhcccccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCc-CCHHHHHHHHHHHHhC
Confidence 3333233 22232222367999999999999999999999999999999999999995 8999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEccCCCCCCc--hhhhcCCeecC-CcEEeCCCCCCCCCC
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS--PFERVGLNSSV-GGIQVDGQFRTRMPG 337 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~aD~vi~a~G~~p~~~--~~~~~gl~~~~-g~i~vd~~~~t~~~~ 337 (489)
|+++++ ++.+++++..+++ ..+.+++|+ ++.+|.+++|+|++||++ -|++.|++.++ |+|.||.+++|++||
T Consensus 228 gv~i~~-~~~v~~~~~~~~~--v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD~~~~Tnvp~ 304 (454)
T COG1249 228 GVKILL-NTKVTAVEKKDDG--VLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVDDQMTTNVPG 304 (454)
T ss_pred CeEEEc-cceEEEEEecCCe--EEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeCCccccCCCC
Confidence 999999 9999999865444 467888876 799999999999999998 38999999974 789999888889999
Q ss_pred eEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecCCcCcE
Q 011267 338 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGET 415 (489)
Q Consensus 338 Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 415 (489)
|||+|||+..+. ....|..+|+.++.|+++... ..|..+|+ ..|..+- +..+|....+.
T Consensus 305 IyA~GDV~~~~~----------Lah~A~~eg~iaa~~i~g~~~~~~d~~~iP~---~ift~Pe------ia~VGlte~ea 365 (454)
T COG1249 305 IYAIGDVIGGPM----------LAHVAMAEGRIAAENIAGGKRTPIDYRLIPS---VVFTDPE------IASVGLTEEEA 365 (454)
T ss_pred EEEeeccCCCcc----------cHhHHHHHHHHHHHHHhCCCCCcCcccCCCE---EEECCCc------ceeeeCCHHHH
Confidence 999999988654 223489999999999996222 24666786 3454442 44555542210
Q ss_pred ------EEEc--cC-----------CCcEEEEEEE--CCEEEEEEeccCCHHHhHHHHHH-HhcCCCCC-hh-hhcCCCc
Q 011267 416 ------IEIG--NF-----------DPKIATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD-KA-KLQQASS 471 (489)
Q Consensus 416 ------~~~~--~~-----------~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~ 471 (489)
+..+ .+ ...+.++.++ +++|+|++++..+++++.....+ ++.+.+.+ .. .++.|||
T Consensus 366 ~~~g~~~~~~~~~f~~~~ra~~~~~~~G~~Klv~d~~t~~IlGahivg~~A~ElI~~~~~a~~~g~t~~~~~~~i~~HPT 445 (454)
T COG1249 366 KEAGIDYKVGKFPFAANGRAITMGETDGFVKLVVDKETGRILGAHIVGPGASELINEIALAIEMGATAEDLALTIHAHPT 445 (454)
T ss_pred HhcCCceEEEEeecccchhHHhccCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcCCCCCCC
Confidence 1111 01 2346676665 48999999988889998877655 57777665 23 4689999
Q ss_pred HHHHHHHHH
Q 011267 472 VEEALEIAR 480 (489)
Q Consensus 472 ~~e~~~~~~ 480 (489)
++|+++.|+
T Consensus 446 ~sE~~~~a~ 454 (454)
T COG1249 446 LSEALKEAA 454 (454)
T ss_pred hHHHHHHhC
Confidence 999999874
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=349.25 Aligned_cols=403 Identities=18% Similarity=0.266 Sum_probs=273.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CC-CCCccccCC--------------CCC---CC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ER-PALTKGYLF--------------PLD---KK 107 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~~-~~l~~~~~~--------------~~~---~~ 107 (489)
++.++|||||||||||++||..+++.|. +|+|||++...+- ++ +--+|.++. ... ..
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGM---KVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 4567999999999999999999999987 7999998642110 10 000111100 000 00
Q ss_pred CCCCCCCccccC---CCCCCCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVG---SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
..++........ .........++++. +++++.++.+ . .+.+++.+ ++.++.||+||||||+.|. .|.++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~-~--~~~~~v~v-~~~~~~~d~lViATGs~p~-~p~i~G~ 153 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHAR-F--ESPNTVRV-GGETLRAKRIFINTGARAA-IPPIPGL 153 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEE-E--ccCCEEEE-CcEEEEeCEEEEcCCCCCC-CCCCCCC
Confidence 001000000000 00001223455666 9999987543 2 34567766 4667999999999999997 4555664
Q ss_pred CCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC
Q 011267 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G 263 (489)
+...++.. +.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.|
T Consensus 154 ~~~~~~~~------~~~~~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~G 226 (463)
T PRK06370 154 DEVGYLTN------ETIFSLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR-EDEDVAAAVREILEREG 226 (463)
T ss_pred CcCceEcc------hHhhCccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc-cCHHHHHHHHHHHHhCC
Confidence 44333332 222222245799999999999999999999999999999999999885 78999999999999999
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCCCCCeE
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIF 339 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iy 339 (489)
|++++ +++|++++..+++....+... +++++++|.||+|+|.+|+++ + ++..|++.+ +|+|.||+++||++|+||
T Consensus 227 V~i~~-~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l~t~~~~Iy 305 (463)
T PRK06370 227 IDVRL-NAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQLRTTNPGIY 305 (463)
T ss_pred CEEEe-CCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCCcCCCCCEE
Confidence 99999 999999985433322223333 345799999999999999998 4 678888876 566999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC----
Q 011267 340 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 413 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~---- 413 (489)
|+|||+..+. ....|..+|+.+|.||++.....+ ..+|+ .. |..+- +..+|....
T Consensus 306 AiGD~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~-~~~p~------ia~vG~te~~a~~ 366 (463)
T PRK06370 306 AAGDCNGRGA----------FTHTAYNDARIVAANLLDGGRRKVSDRIVPY--AT-YTDPP------LARVGMTEAEARK 366 (463)
T ss_pred EeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCCCcccccCCe--EE-EcCCC------cEeeeCCHHHHHH
Confidence 9999986532 334588999999999986433333 33443 22 22211 344554321
Q ss_pred ---cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCCcHH
Q 011267 414 ---ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVE 473 (489)
Q Consensus 414 ---~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~ 473 (489)
+. ... .+....+.++.++ +++|+|+++++.++.++... ..++.++.+++ ...++.|||++
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (463)
T PRK06370 367 SGRRVLVGTRPMTRVGRAVEKGETQGFMKVVVDADTDRILGATILGVHGDEMIHEILDAMYAGAPYTTLSRAIHIHPTVS 446 (463)
T ss_pred cCCCeEEEEEecCcchhHHhcCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCChH
Confidence 00 100 0111336666664 59999999877777776655 45678888886 34458899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|+++.|++++.+
T Consensus 447 e~~~~a~~~~~~ 458 (463)
T PRK06370 447 ELIPTLAQALRR 458 (463)
T ss_pred HHHHHHHHhhhh
Confidence 999999998754
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=349.09 Aligned_cols=403 Identities=18% Similarity=0.275 Sum_probs=280.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCC--------CCCCCCCCCC---
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF--------PLDKKPARLP--- 112 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~--------~~~~~~~~~~--- 112 (489)
++.++||+|||||+||++||.+|++.|. +|+|||+.+...... +.-++.+.. ........+.
T Consensus 2 ~~~~yDvvVIGaGpaG~~aA~~la~~G~---~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~ 78 (461)
T PRK05249 2 HMYDYDLVVIGSGPAGEGAAMQAAKLGK---RVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL 78 (461)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCC---EEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence 4667999999999999999999999986 799999865432111 111111000 0000000000
Q ss_pred --CCccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCCCC
Q 011267 113 --GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 113 --~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~g 182 (489)
.+..... .........++++.+++++.+ ++..++....++...+|. ++.||+||||||+.|.. |+.++
T Consensus 79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~-p~~~~ 156 (461)
T PRK05249 79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQG-RARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYR-PPDVD 156 (461)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCC-CCCCC
Confidence 0000000 000001223456779999986 666777766667666664 68999999999999874 43333
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
...+.++ +++.+......+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.
T Consensus 157 ~~~~~v~------~~~~~~~~~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~ 229 (461)
T PRK05249 157 FDHPRIY------DSDSILSLDHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSF-LDDEISDALSYHLRDS 229 (461)
T ss_pred CCCCeEE------cHHHhhchhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCc-CCHHHHHHHHHHHHHc
Confidence 3333333 23334443456899999999999999999999999999999999999984 8999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeE
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 339 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iy 339 (489)
||++++ ++.+++++..++ .+ .+++.+|+++++|.|++|+|++|++++ ++.++++.+ +|++.||+++||+.|+||
T Consensus 230 gI~v~~-~~~v~~i~~~~~-~~-~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iy 306 (461)
T PRK05249 230 GVTIRH-NEEVEKVEGGDD-GV-IVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENYQTAVPHIY 306 (461)
T ss_pred CCEEEE-CCEEEEEEEeCC-eE-EEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCcccCCCCEE
Confidence 999999 999999985433 33 466778889999999999999999885 578888875 567999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC-----
Q 011267 340 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 413 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~----- 413 (489)
|+|||+..+. ....|..+|+.+|.+|++... ..+..+|.. .|..+- +.++|....
T Consensus 307 AiGD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~---i~~~p~------ia~vG~te~~a~~~ 367 (461)
T PRK05249 307 AVGDVIGFPS----------LASASMDQGRIAAQHAVGEATAHLIEDIPTG---IYTIPE------ISSVGKTEQELTAA 367 (461)
T ss_pred EeeecCCCcc----------cHhHHHHHHHHHHHHHcCCCcccccCCCCeE---EECCCc------ceEecCCHHHHHHc
Confidence 9999996432 345699999999999985432 223445543 333321 333443321
Q ss_pred ---------------cEEEEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011267 414 ---------------ETIEIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 473 (489)
Q Consensus 414 ---------------~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 473 (489)
.....+. ...+.++.++ +++|+|+++++.++.++... ..++..+.+++ . ..++.|||+.
T Consensus 368 g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~ 446 (461)
T PRK05249 368 KVPYEVGRARFKELARAQIAGD-NVGMLKILFHRETLEILGVHCFGERATEIIHIGQAIMEQKGTIEYFVNTTFNYPTMA 446 (461)
T ss_pred CCCeEEEEEccccccceeecCC-CCcEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHH
Confidence 0011111 2336666553 58999999877787776655 45578888876 3 4457899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|+++.|++++.+
T Consensus 447 e~~~~~~~~~~~ 458 (461)
T PRK05249 447 EAYRVAALDGLN 458 (461)
T ss_pred HHHHHHHHHHhc
Confidence 999999876554
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=334.33 Aligned_cols=297 Identities=24% Similarity=0.347 Sum_probs=239.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
++++|||||||++|+.+|..|.+.. ++.+|||||+.++++|. |.|..-.....+.... .....+.
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~hl~~-plL~eva~g~l~~~~i-------------~~p~~~~ 66 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDYHLFT-PLLYEVATGTLSESEI-------------AIPLRAL 66 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCccccc-hhhhhhhcCCCChhhe-------------eccHHHH
Confidence 5688999999999999999999985 36789999999998776 5554311111111111 1234556
Q ss_pred HHHC-CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc---
Q 011267 130 YKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE--- 205 (489)
Q Consensus 130 ~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~--- 205 (489)
+++. +++++.+ +|++||.++++|+++++..++||+||+|+|+.+.. +..+|. .+..+.+++++|+.+++..+.
T Consensus 67 ~~~~~~v~~~~~-~V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~-fgi~G~-~E~a~~lks~edA~~ir~~l~~~f 143 (405)
T COG1252 67 LRKSGNVQFVQG-EVTDIDRDAKKVTLADLGEISYDYLVVALGSETNY-FGIPGA-AEYAFGLKTLEDALRLRRHLLEAF 143 (405)
T ss_pred hcccCceEEEEE-EEEEEcccCCEEEeCCCccccccEEEEecCCcCCc-CCCCCH-HHhCCCCCCHHHHHHHHHHHHHHH
Confidence 6644 4999984 99999999999999998889999999999999874 444553 234567889999987776553
Q ss_pred -----CC-----CcEEEECCCHHHHHHHHHHHhCC-------------CcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 206 -----KA-----KKVVVVGGGYIGMEVAAAAVGWK-------------LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 206 -----~~-----~~vvViG~G~~g~e~A~~l~~~g-------------~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
.. .+++|+|||++|+|+|..|+++- .+|+++++.+++|+ .+++++++..++.|+++
T Consensus 144 e~a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp-~~~~~l~~~a~~~L~~~ 222 (405)
T COG1252 144 EKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILP-MFPPKLSKYAERALEKL 222 (405)
T ss_pred HHhhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhcc-CCCHHHHHHHHHHHHHC
Confidence 12 26999999999999999987542 38999999999999 59999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEccCCCCCCchhhh-cCCeec-CCcEEeCCCCCC-CCCCe
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQFRT-RMPGI 338 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~~~t-~~~~I 338 (489)
||++++ ++.|++++++ .|++++|+ +|+||.+||++|.+++ +++++ .+++.+ .|++.||+++|+ ++|+|
T Consensus 223 GV~v~l-~~~Vt~v~~~------~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~I 294 (405)
T COG1252 223 GVEVLL-GTPVTEVTPD------GVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDI 294 (405)
T ss_pred CCEEEc-CCceEEECCC------cEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCe
Confidence 999999 9999999854 58888887 4999999999999998 78888 588777 488999999998 89999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
||+|||+..... +. .+...+.|.+||..+|+||..
T Consensus 295 Fa~GD~A~~~~~---~p-~P~tAQ~A~Qqg~~~a~ni~~ 329 (405)
T COG1252 295 FAAGDCAAVIDP---RP-VPPTAQAAHQQGEYAAKNIKA 329 (405)
T ss_pred EEEeccccCCCC---CC-CCChhHHHHHHHHHHHHHHHH
Confidence 999999987664 11 134667899999999999975
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=339.68 Aligned_cols=396 Identities=18% Similarity=0.229 Sum_probs=273.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCCC----CCCCccccCCC------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPYE----RPALTKGYLFP------------ 103 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~---------~~~~y~----~~~l~~~~~~~------------ 103 (489)
..++||+||||||||++||..+++.|. +|+|||+. ..+... .+--+|.++..
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~---~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~ 99 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGA---KVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKN 99 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHh
Confidence 446899999999999999999999987 79999962 111110 01111111100
Q ss_pred --CC---CCCCCCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCC
Q 011267 104 --LD---KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCT 173 (489)
Q Consensus 104 --~~---~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~ 173 (489)
.. ....++....... -..........+...+++++.+ ++..+++...+|.+.+|+ ++.||+||||||++
T Consensus 100 ~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g-~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~ 178 (499)
T PLN02507 100 YGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEG-EGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSR 178 (499)
T ss_pred cCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCC
Confidence 00 0000000000000 0000000112345579999986 888899888888888876 58899999999999
Q ss_pred CCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHH
Q 011267 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (489)
Q Consensus 174 ~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~ 253 (489)
|. .|.++|.+ ...+.++...+ ...+++++|||+|.+|+|+|..+.++|.+|+++++.+++++. +++++.+
T Consensus 179 p~-~p~ipG~~-----~~~~~~~~~~l---~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~ 248 (499)
T PLN02507 179 AQ-RPNIPGKE-----LAITSDEALSL---EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRG-FDDEMRA 248 (499)
T ss_pred CC-CCCCCCcc-----ceechHHhhhh---hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcc-cCHHHHH
Confidence 86 45444421 11233333332 234789999999999999999999999999999999988874 8999999
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQ 330 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~ 330 (489)
.+.+.|++.||++++ +++|++++..+ +.+ .+.+.+|+++++|.|++++|++|++++ ++.+|++.+ +|+|.||++
T Consensus 249 ~l~~~l~~~GI~i~~-~~~V~~i~~~~-~~~-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~ 325 (499)
T PLN02507 249 VVARNLEGRGINLHP-RTNLTQLTKTE-GGI-KVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEY 325 (499)
T ss_pred HHHHHHHhCCCEEEe-CCEEEEEEEeC-CeE-EEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCC
Confidence 999999999999999 99999998543 333 467778889999999999999999987 678898886 467999999
Q ss_pred CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeee
Q 011267 331 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFF 408 (489)
Q Consensus 331 ~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~ 408 (489)
+||++|||||+|||+..+. ....|..+|+.++.||+++... .+..+|+ ..|+.+- +..+
T Consensus 326 ~~Ts~p~IyAiGDv~~~~~----------l~~~A~~qg~~aa~ni~g~~~~~~~~~~~p~---~if~~p~------ia~v 386 (499)
T PLN02507 326 SRTNIPSIWAIGDVTNRIN----------LTPVALMEGTCFAKTVFGGQPTKPDYENVAC---AVFCIPP------LSVV 386 (499)
T ss_pred CcCCCCCEEEeeEcCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCe---EEECCCc------cEEE
Confidence 9999999999999996432 3456999999999999864332 2334453 3444421 2334
Q ss_pred cCCcC--------cE-EE-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-
Q 011267 409 GDNVG--------ET-IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K- 463 (489)
Q Consensus 409 G~~~~--------~~-~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~- 463 (489)
|.... .. +. .+.....+.++.++ +++|+|++++..++.++... ..+|..+.+++ .
T Consensus 387 Glte~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~ 466 (499)
T PLN02507 387 GLSEEEAVEQAKGDILVFTSSFNPMKNTISGRQEKTVMKLIVDAETDKVLGASMCGPDAPEIMQGIAVALKCGATKAQFD 466 (499)
T ss_pred eCCHHHHHhccCCCEEEEEeecCccccccccCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 43211 00 00 01111235666554 58999999877777766655 45678888886 3
Q ss_pred hhhcCCCcHHHHHHHHH
Q 011267 464 AKLQQASSVEEALEIAR 480 (489)
Q Consensus 464 ~~~~~~~~~~e~~~~~~ 480 (489)
..++.|||++|.+..++
T Consensus 467 ~~~~~hPt~~E~~~~~~ 483 (499)
T PLN02507 467 STVGIHPSAAEEFVTMR 483 (499)
T ss_pred hcCcCCCChHHHHHHHH
Confidence 44688999999999876
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=345.30 Aligned_cols=402 Identities=17% Similarity=0.256 Sum_probs=272.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccCC---------------CC--CCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF---------------PL--DKK 107 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~~---------------~~--~~~ 107 (489)
...++||+|||||+||++||..|++.|. +|+|||++..-+ .++ +--++.++. .. ...
T Consensus 3 ~~~~~dviVIGaG~aG~~aA~~l~~~g~---~v~lie~~~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~ 79 (468)
T PRK14694 3 SDNNLHIAVIGSGGSAMAAALKATERGA---RVTLIERGTIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAP 79 (468)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEEccccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCC
Confidence 4568999999999999999999999986 799999864211 000 000111000 00 000
Q ss_pred CCCCCCCccccC---CCCC-CCChhHHHH-CCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVG---SGGE-RQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK 180 (489)
Q Consensus 108 ~~~~~~~~~~~~---~~~~-~~~~~~~~~-~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~ 180 (489)
..++..+..... .... ......+++ .+++++.+ ++..+|.+..+|.+.+| .++.||+||||||++|. .|.+
T Consensus 80 ~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~-~p~i 157 (468)
T PRK14694 80 VVDRSALLAQQQARVEELRESKYQSILRENAAITVLNG-EARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPA-EPPV 157 (468)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEE-EEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCC-CCCC
Confidence 000000000000 0000 001122333 37899986 79999998888988887 37999999999999987 4555
Q ss_pred CCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHH
Q 011267 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (489)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~ 260 (489)
+|.+...+ +. ..+...+ ...+++++|||+|++|+|+|..|.++|.+|+++++ +++++. +++++.+.+.+.++
T Consensus 158 ~G~~~~~~--~~-~~~~~~l---~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~-~~~l~~-~~~~~~~~l~~~l~ 229 (468)
T PRK14694 158 PGLAETPY--LT-STSALEL---DHIPERLLVIGASVVALELAQAFARLGSRVTVLAR-SRVLSQ-EDPAVGEAIEAAFR 229 (468)
T ss_pred CCCCCCce--Ec-chhhhch---hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEC-CCCCCC-CCHHHHHHHHHHHH
Confidence 55332222 22 1222222 23478999999999999999999999999999986 467764 78999999999999
Q ss_pred hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh--hhcCCeecCCcEEeCCCCCCCCCCe
Q 011267 261 QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 261 ~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~I 338 (489)
+.||++++ ++.+++++.+ ++. ..+.+.++ ++++|.||+|+|.+|+++++ +.++++.++|.|.||+++||++|+|
T Consensus 230 ~~GI~v~~-~~~v~~i~~~-~~~-~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~i~vd~~~~Ts~~~I 305 (468)
T PRK14694 230 REGIEVLK-QTQASEVDYN-GRE-FILETNAG-TLRAEQLLVATGRTPNTENLNLESIGVETERGAIRIDEHLQTTVSGI 305 (468)
T ss_pred hCCCEEEe-CCEEEEEEEc-CCE-EEEEECCC-EEEeCEEEEccCCCCCcCCCCchhcCcccCCCeEeeCCCcccCCCCE
Confidence 99999999 9999999754 232 23555444 79999999999999999874 6678877667799999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC----
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 413 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~---- 413 (489)
||+|||+..+. ....|..+|+.+|.||++... ..+..+|.+ ..++.+ +..+|....
T Consensus 306 yA~GD~~~~~~----------~~~~A~~~G~~aa~~i~~~~~~~~~~~~p~~--~~~~p~-------~a~vGlte~~a~~ 366 (468)
T PRK14694 306 YAAGDCTDQPQ----------FVYVAAAGGSRAAINMTGGDASLDLSAMPEV--IFTDPQ-------VATVGLSEAEAQA 366 (468)
T ss_pred EEEeecCCCcc----------cHHHHHHHHHHHHHHhcCCCcccccCCCCeE--EECCCC-------eEEeeCCHHHHHH
Confidence 99999997543 334588899999999986432 223334543 222222 444554421
Q ss_pred ---c--EEEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHH
Q 011267 414 ---E--TIEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVE 473 (489)
Q Consensus 414 ---~--~~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~ 473 (489)
+ .... ......+.++.++ +++|+|++++..++.++... ..++..+.+++ . ...+.|||++
T Consensus 367 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 446 (468)
T PRK14694 367 QGYDTDSRTLDLENVPRALVNFDTGGFIKMVAERGSGRLLGVQVVAGEAGELIQTAVMALRARMTVNEIADELFPYLTMV 446 (468)
T ss_pred cCCceEEEEEecccchhhhhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhccccCCCchH
Confidence 0 0010 0011236666553 59999999877677776655 45678888886 3 4457899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|+++.|++.+..
T Consensus 447 e~~~~~~~~~~~ 458 (468)
T PRK14694 447 EGLKLCAQTFTK 458 (468)
T ss_pred HHHHHHHHhhhc
Confidence 999999887643
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=346.48 Aligned_cols=403 Identities=22% Similarity=0.290 Sum_probs=274.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCCC----------------CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPLD----------------KKPAR 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~~----------------~~~~~ 110 (489)
..+|||||||||||++||..|++.|. +|+|||++..-. +..+.-++.++.... .....
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGL---KVAIVEKEKLGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCC---cEEEEeccccccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 56899999999999999999999987 799999876211 111111221110000 00000
Q ss_pred CCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC-CeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-GKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~-g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
+..+..... ..........+++.+++++.+ ++..+++...++...+ +.++.||+||||||++|..+ +|...+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~---pg~~~~ 155 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRG-EAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL---PGIEID 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC---CCCCCC
Confidence 000000000 000001223455679999986 6777776655555333 46799999999999998643 243333
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
+... .+..+..++ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 156 ~~~v-~~~~~~~~~---~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~i 230 (462)
T PRK06416 156 GRVI-WTSDEALNL---DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPG-EDKEISKLAERALKKRGIKI 230 (462)
T ss_pred CCeE-EcchHhhCc---cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCc-CCHHHHHHHHHHHHHcCCEE
Confidence 3222 222333222 235689999999999999999999999999999999999885 89999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEccCCCCCCchh--hhcCCeecCCcEEeCCCCCCCCCCeEEe
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGIFAI 341 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~~g~i~vd~~~~t~~~~Iya~ 341 (489)
++ +++|++++.++ +.+ .+.+.++ +++++|.||+|+|.+|+++++ +..|++.++|.+.||+++||+.|+|||+
T Consensus 231 ~~-~~~V~~i~~~~-~~v-~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~~g~i~vd~~~~t~~~~VyAi 307 (462)
T PRK06416 231 KT-GAKAKKVEQTD-DGV-TVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTDRGFIEVDEQLRTNVPNIYAI 307 (462)
T ss_pred Ee-CCEEEEEEEeC-CEE-EEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeecCCEEeECCCCccCCCCEEEe
Confidence 99 99999998543 333 4555555 679999999999999999874 6888887767799999999999999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCc-------
Q 011267 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------- 414 (489)
Q Consensus 342 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~------- 414 (489)
|||+..+. .+..|..+|+.+|.||++. ...++.....+...++.. +..+|....+
T Consensus 308 GD~~~~~~----------~~~~A~~~g~~aa~ni~~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~ 369 (462)
T PRK06416 308 GDIVGGPM----------LAHKASAEGIIAAEAIAGN-PHPIDYRGIPAVTYTHPE-------VASVGLTEAKAKEEGFD 369 (462)
T ss_pred eecCCCcc----------hHHHHHHHHHHHHHHHcCC-CCCCCCCCCCeEEECCCc-------eEEEeCCHHHHHhcCCC
Confidence 99996422 4567999999999999863 333333222223333332 4445544211
Q ss_pred EE-EE---c--------cCCCcEEEEEE--ECCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011267 415 TI-EI---G--------NFDPKIATFWI--DSGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 477 (489)
Q Consensus 415 ~~-~~---~--------~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~ 477 (489)
.. .. . +....+.++.+ ++++|+|+++++.++.++... ..++.++.+++ . ..+..|||+.|+++
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 449 (462)
T PRK06416 370 VKVVKFPFAGNGKALALGETDGFVKLIFDKKDGEVLGAHMVGARASELIQEAQLAINWEATPEDLALTIHPHPTLSEALG 449 (462)
T ss_pred eEEEEEecCcChHhHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCHHHHHH
Confidence 00 00 0 01123555555 369999999877777776655 45678888886 3 33578999999999
Q ss_pred HHHccCCc
Q 011267 478 IARAALPV 485 (489)
Q Consensus 478 ~~~~~~~~ 485 (489)
.|++.+..
T Consensus 450 ~~~~~~~~ 457 (462)
T PRK06416 450 EAALAAAG 457 (462)
T ss_pred HHHHHhcc
Confidence 99977654
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=340.56 Aligned_cols=392 Identities=20% Similarity=0.280 Sum_probs=265.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCC--------------CC-C--CCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFP--------------LD-K--KPAR 110 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~--------------~~-~--~~~~ 110 (489)
++||+||||||||++||..+++.|. +|+|||++..-. ...+--+|.++.. .. . ...+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGA---KALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---cEEEecccccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 5899999999999999999999987 699999863211 0001111111000 00 0 0000
Q ss_pred CCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
++....... ..........+++.+++++.++.+ . .+.++|.+ ++..+.||+||||||++|..++.++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~-~--~~~~~v~v-~~~~~~~d~vIiAtGs~p~~p~~i~g~~--- 151 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHAR-F--TKDGTVEV-NGRDYTAPHILIATGGKPSFPENIPGAE--- 151 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEE-E--ccCCEEEE-CCEEEEeCEEEEecCCCCCCCCCCCCCc---
Confidence 000000000 000001123345679999987433 2 23456666 5667999999999999986431444422
Q ss_pred eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
... +.+.+......+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.|+++||+++
T Consensus 152 --~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~gI~i~ 225 (450)
T TIGR01421 152 --LGT---DSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLR-SFDSMISETITEEYEKEGINVH 225 (450)
T ss_pred --eeE---cHHHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccCHHHHHHHHHHHHHcCCEEE
Confidence 211 2233333233578999999999999999999999999999999999987 4899999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEecc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD 343 (489)
+ ++.++++..++++. ..+.+++| +++++|.||+++|++||+++ ++.++++.+ +|++.||+++||++|+|||+||
T Consensus 226 ~-~~~v~~i~~~~~~~-~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~T~~p~IyAiGD 303 (450)
T TIGR01421 226 K-LSKPVKVEKTVEGK-LVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQNTNVPGIYALGD 303 (450)
T ss_pred c-CCEEEEEEEeCCce-EEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCCcCCCCCEEEEEe
Confidence 9 99999998543332 35677777 57999999999999999985 578899886 5679999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcCc------
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 414 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~------ 414 (489)
|+..+. .+..|..+|+.+|.||+++.. ..+..+|+ ..|..+- +..+|....+
T Consensus 304 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~f~~p~------ia~vGlte~~a~~~~g 364 (450)
T TIGR01421 304 VVGKVE----------LTPVAIAAGRKLSERLFNGKTDDKLDYNNVPT---VVFSHPP------IGTIGLTEKEAIEKYG 364 (450)
T ss_pred cCCCcc----------cHHHHHHHHHHHHHHHhcCCCCCccCcccCCe---EEeCCCc------eEEEeCCHHHHHhhcC
Confidence 996432 345689999999999986432 23445554 2333321 2333432210
Q ss_pred ---E-EEEc-----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011267 415 ---T-IEIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 474 (489)
Q Consensus 415 ---~-~~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e 474 (489)
. +... +....+.++.++ +++|+|++++..++.++... ..++.++.+++ . ..++.|||++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T TIGR01421 365 KENIKVYNSSFTPMYYAMTSEKQKCRMKLVCAGKEEKVVGLHGIGDGVDEMLQGFAVAIKMGATKADFDNTVAIHPTSSE 444 (450)
T ss_pred CCCEEEEEEEcChhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHH
Confidence 0 0000 111235555443 59999999877778776655 55678888886 3 34578999999
Q ss_pred HHHHH
Q 011267 475 ALEIA 479 (489)
Q Consensus 475 ~~~~~ 479 (489)
++..+
T Consensus 445 ~~~~~ 449 (450)
T TIGR01421 445 ELVTM 449 (450)
T ss_pred HHhhc
Confidence 98765
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=343.30 Aligned_cols=402 Identities=16% Similarity=0.226 Sum_probs=270.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCC---------C-------CCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF---------P-------LDKKP 108 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~---------~-------~~~~~ 108 (489)
+.++||+|||||+||++||..+++.|. +|+|||+.+.+.-. + +--+|.++. . .....
T Consensus 2 ~~~~DvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (471)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGL---ETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK 78 (471)
T ss_pred CccceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence 346999999999999999999999986 79999986533211 1 111111110 0 00000
Q ss_pred CCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
.++..+..... ..........+++.+++++.+ ++..++.....|...+| .++.||+||||||++|..+|.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g-~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~- 156 (471)
T PRK06467 79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNG-LGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH- 156 (471)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-
Confidence 00000000000 000000123355679999986 56556654444555566 479999999999999875554333
Q ss_pred CCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC
Q 011267 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G 263 (489)
..+++.. ..+. ......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.|++.
T Consensus 157 ~~~~v~~---~~~~---~~~~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~-~d~~~~~~~~~~l~~~- 228 (471)
T PRK06467 157 DDPRIWD---STDA---LELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPA-ADKDIVKVFTKRIKKQ- 228 (471)
T ss_pred CCCcEEC---hHHh---hccccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCc-CCHHHHHHHHHHHhhc-
Confidence 2233322 1222 222245789999999999999999999999999999999999985 8999999999999988
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
|++++ ++.|++++..++ .+ .+.+.+ + +++++|.||+++|++|++++ ++.+|++.+ +|+|.||+++||++|
T Consensus 229 v~i~~-~~~v~~i~~~~~-~~-~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t~~p 305 (471)
T PRK06467 229 FNIML-ETKVTAVEAKED-GI-YVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRTNVP 305 (471)
T ss_pred eEEEc-CCEEEEEEEcCC-EE-EEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCcccCCC
Confidence 99999 999999975433 22 355443 2 46999999999999999985 577888886 567999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
+|||+|||+..+. ....|..+|+.+|.+|++.. ..+ ...|+. ..++.+ +..+|....
T Consensus 306 ~VyAiGDv~~~~~----------la~~A~~eG~~aa~~i~g~~-~~~~~~~~p~~--~~~~p~-------ia~vGlte~e 365 (471)
T PRK06467 306 HIFAIGDIVGQPM----------LAHKGVHEGHVAAEVIAGKK-HYFDPKVIPSI--AYTEPE-------VAWVGLTEKE 365 (471)
T ss_pred CEEEehhhcCCcc----------cHHHHHHHHHHHHHHHcCCC-CCCCCCCCCeE--EECCCc-------eeEEECCHHH
Confidence 9999999986432 34569999999999998632 333 345542 222221 344454321
Q ss_pred ------cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCC
Q 011267 414 ------ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQAS 470 (489)
Q Consensus 414 ------~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~ 470 (489)
+. ... .+....+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.||
T Consensus 366 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~t~~ilG~~~vg~~a~e~i~~~a~ai~~~~t~~~l~~~~~~hP 445 (471)
T PRK06467 366 AKEEGIEYETATFPWAASGRAIASDCADGMTKLIFDKETHRVLGGAIVGTNAGELLGEIGLAIEMGCDAEDIALTIHAHP 445 (471)
T ss_pred HHhcCCCeEEEEEecCcchhhhhCCCCceEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCC
Confidence 00 000 0111235666554 48999999877777776655 45578888876 3 3357899
Q ss_pred cHHHHHHHHHccCCcc
Q 011267 471 SVEEALEIARAALPVE 486 (489)
Q Consensus 471 ~~~e~~~~~~~~~~~~ 486 (489)
|+.|+++.|++++..+
T Consensus 446 t~~e~~~~a~~~~~~~ 461 (471)
T PRK06467 446 TLHESVGLAAEAFEGS 461 (471)
T ss_pred ChHHHHHHHHHhhcCC
Confidence 9999999999876543
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=339.55 Aligned_cols=393 Identities=20% Similarity=0.289 Sum_probs=270.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccCC-----------------CCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLF-----------------PLDKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~~-----------------~~~~~~~ 109 (489)
..+||+||||||||++||..|++.|. +|+|||++..-. .++ +--+|.++. .......
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~G~---~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMYGA---KVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccchhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 36899999999999999999999987 799999863211 000 100110000 0000000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
++........ ..........+.+.+++++.+ ++..++. ++|.+ +|.++.||+||||||++|. .|.++|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~v~~--~~v~~-~g~~~~~d~lViATGs~p~-~p~i~g~--- 151 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEG-FARFVDA--HTVEV-NGERYTADHILIATGGRPS-IPDIPGA--- 151 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccC--CEEEE-CCEEEEeCEEEEecCCCCC-CCCCCCc---
Confidence 0000000000 000001123345679999986 6666664 67777 6788999999999999986 4544442
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
....+ .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||++
T Consensus 152 --~~~~~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~L~~~GV~i 225 (450)
T PRK06116 152 --EYGIT---SDGFFALEELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLR-GFDPDIRETLVEEMEKKGIRL 225 (450)
T ss_pred --ceeEc---hhHhhCccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCcc-ccCHHHHHHHHHHHHHCCcEE
Confidence 21211 222222223578999999999999999999999999999999998887 489999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEecc
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD 343 (489)
++ +++|++++.++++.+ .+.+.+|+++++|.||+|+|.+|+++. ++.++++.+ +|.|.||+++||++|||||+||
T Consensus 226 ~~-~~~V~~i~~~~~g~~-~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD 303 (450)
T PRK06116 226 HT-NAVPKAVEKNADGSL-TLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQNTNVPGIYAVGD 303 (450)
T ss_pred EC-CCEEEEEEEcCCceE-EEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCCcCCCCEEEEee
Confidence 99 999999986544433 477788889999999999999999985 678888886 5669999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-C--CCCcCCceeeecccccCCCcceeeeeecCCcC-------
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-H--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 413 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------- 413 (489)
|+..+. .+..|..+|+.+|.||++... . .|..+|+ ..|+.+. +..+|....
T Consensus 304 ~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~---~if~~p~------~a~vGlte~~a~~~~~ 364 (450)
T PRK06116 304 VTGRVE----------LTPVAIAAGRRLSERLFNNKPDEKLDYSNIPT---VVFSHPP------IGTVGLTEEEAREQYG 364 (450)
T ss_pred cCCCcC----------cHHHHHHHHHHHHHHHhCCCCCCcCCcCCCCe---EEeCCCc------cEEeeCCHHHHHHhCC
Confidence 986422 455699999999999986433 2 3445554 3444431 334443221
Q ss_pred c--EE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011267 414 E--TI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 474 (489)
Q Consensus 414 ~--~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e 474 (489)
+ .. ... +....+.+++++ +++|+|++++..++.++... ..+|.++.+++ . ..++.|||++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 444 (450)
T PRK06116 365 EDNVKVYRSSFTPMYTALTGHRQPCLMKLVVVGKEEKVVGLHGIGFGADEMIQGFAVAIKMGATKADFDNTVAIHPTAAE 444 (450)
T ss_pred CCcEEEEEEecchhHHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHH
Confidence 1 11 000 111336666654 58999999877777776655 55678888886 3 44578999999
Q ss_pred HHHHHH
Q 011267 475 ALEIAR 480 (489)
Q Consensus 475 ~~~~~~ 480 (489)
++..++
T Consensus 445 ~~~~~~ 450 (450)
T PRK06116 445 EFVTMR 450 (450)
T ss_pred HHhhcC
Confidence 998763
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=338.59 Aligned_cols=391 Identities=18% Similarity=0.244 Sum_probs=268.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCC--------------C--CCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFP--------------L--DKKPAR 110 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~--------------~--~~~~~~ 110 (489)
+|||+||||||||++||..+++.|. +|+|||++. +... .+--+|.++.. . .....+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~---~V~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 77 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGA---KVAIAEEPR-VGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFD 77 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCc-cCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcC
Confidence 5899999999999999999999987 699999853 2211 01111111000 0 000000
Q ss_pred CCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
+....... -..........+++.+++++.+ ++..++++...+. .+|.++.||+||||||++|. .|.++|.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~v~~~~v~v~-~~g~~~~~d~lIiATGs~p~-~p~i~G~~--- 151 (446)
T TIGR01424 78 WKKLLQKKDDEIARLSGLYKRLLANAGVELLEG-RARLVGPNTVEVL-QDGTTYTAKKILIAVGGRPQ-KPNLPGHE--- 151 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEE-EEEEecCCEEEEe-cCCeEEEcCEEEEecCCcCC-CCCCCCcc---
Confidence 00000000 0000011233456679999986 7888887644443 46778999999999999986 45444422
Q ss_pred eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
...+. +........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.+++.||+++
T Consensus 152 --~~~~~---~~~~~l~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~ 225 (446)
T TIGR01424 152 --LGITS---NEAFHLPTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRG-FDDDMRALLARNMEGRGIRIH 225 (446)
T ss_pred --ceech---HHhhcccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcc-cCHHHHHHHHHHHHHCCCEEE
Confidence 11122 222222235789999999999999999999999999999999998885 789999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 344 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~ 344 (489)
+ +++|+++...+++ ..+.+.+|+++++|.||+|+|.+|+++. ++..|++.+ +|++.||+++||++|||||+|||
T Consensus 226 ~-~~~v~~i~~~~~~--~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~IyA~GD~ 302 (446)
T TIGR01424 226 P-QTSLTSITKTDDG--LKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSRTSIPSIYAVGDV 302 (446)
T ss_pred e-CCEEEEEEEcCCe--EEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCccCCCCEEEeecc
Confidence 9 9999999754333 2466778889999999999999999885 578888876 46799999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC--------c
Q 011267 345 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------E 414 (489)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--------~ 414 (489)
+..+. ....|..+|+.++.||++....++ ..+|+ ..|+.+. +..+|.... .
T Consensus 303 ~~~~~----------l~~~A~~~g~~~a~~i~~~~~~~~~~~~~p~---~if~~p~------ia~vG~te~~a~~~~~~~ 363 (446)
T TIGR01424 303 TDRIN----------LTPVAIMEATCFANTEFGNNPTKFDHDLIAT---AVFSQPP------LGTVGLTEEEAREKFTGD 363 (446)
T ss_pred CCCcc----------chhHHHHHHHHHHHHHhcCCCCccCcCCCCe---EEeCCch------hEEEECCHHHHHhhcCCC
Confidence 96322 344689999999999986443333 34554 2343321 233443211 0
Q ss_pred EE-E-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011267 415 TI-E-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 477 (489)
Q Consensus 415 ~~-~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~ 477 (489)
.. . ..+....+.++.++ +++|+|++++..++.++... ..+|.++.+++ . ..++.|||++|++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 443 (446)
T TIGR01424 364 ILVYRAGFRPMKNTFSGRQEKTLMKLVVDEKDDKVLGAHMVGPDAAEIIQGIAIALKMGATKADFDSTVGIHPSSAEEFV 443 (446)
T ss_pred EEEEEEecCchHhHhhcCCCceEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhccccCCChHHHHh
Confidence 00 0 01112235666553 59999999877777776655 45678888886 3 45688999999987
Q ss_pred HH
Q 011267 478 IA 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 444 ~~ 445 (446)
T TIGR01424 444 TM 445 (446)
T ss_pred hc
Confidence 65
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=339.10 Aligned_cols=402 Identities=20% Similarity=0.268 Sum_probs=268.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCCCC-----C--CCCCCCCCcccc
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFPLD-----K--KPARLPGFHTCV 118 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~~~-----~--~~~~~~~~~~~~ 118 (489)
+++||+||||||||++||..+++.|. +|+|||+...+... .+--+|.++.... . ....+ +.....
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~G~---~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~-gi~~~~ 77 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQLGL---KVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHL-GIEVKP 77 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhc-CccccC
Confidence 45899999999999999999999987 79999974332211 0111111110000 0 00000 000000
Q ss_pred CCCCC--------------CCChhHHHHCCcEEEeCCcEEEEeCCC-CEEEeCCCe--EEeeCcEEecCCCCCCCCCCCC
Q 011267 119 GSGGE--------------RQTPEWYKEKGIEMIYQDPVTSIDIEK-QTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 119 ~~~~~--------------~~~~~~~~~~~i~~~~~~~V~~id~~~-~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~ 181 (489)
..++. .....++++.+++++.+ +. .++.+. ..+...+|. ++.||+||||||++|..+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a-~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~~i---p 152 (466)
T PRK06115 78 TLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKG-WG-RLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPTPL---P 152 (466)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EE-EEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCCCC---C
Confidence 00000 01123345568888876 33 344333 244455663 699999999999988532 3
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|...++...+. .+.+......+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.|++
T Consensus 153 g~~~~~~~~~~----~~~~~~~~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~-~d~~~~~~l~~~l~~ 227 (466)
T PRK06115 153 GVTIDNQRIID----STGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPG-TDTETAKTLQKALTK 227 (466)
T ss_pred CCCCCCCeEEC----HHHHhCCccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCC-CCHHHHHHHHHHHHh
Confidence 43344544442 2333332346799999999999999999999999999999999999985 899999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEe-CC--CcEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKL-ED--GSTIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMP 336 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~--g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~ 336 (489)
.||++++ +++|++++.++++....+.. .+ ++++++|.|++++|++||++. ++..+++.+++++.||+++||++|
T Consensus 228 ~gV~i~~-~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~~Ts~~ 306 (466)
T PRK06115 228 QGMKFKL-GSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHHRTSVP 306 (466)
T ss_pred cCCEEEE-CcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCeecCCC
Confidence 9999999 99999998543332222222 12 357999999999999999985 567788876567899999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
+|||+|||+..+. ....|..+|+.+|.||++... ..+..+|+. +|..+- +..+|....
T Consensus 307 ~IyA~GD~~~~~~----------la~~A~~~g~~aa~~i~~~~~~~~~~~~p~~---~~t~p~------ia~vGlte~~a 367 (466)
T PRK06115 307 GVWVIGDVTSGPM----------LAHKAEDEAVACIERIAGKAGEVNYGLIPGV---IYTRPE------VATVGKTEEQL 367 (466)
T ss_pred CEEEeeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeE---EECCcc------cEEeeCCHHHH
Confidence 9999999997532 345689999999999986432 234455643 232211 334444321
Q ss_pred -----cEE-E------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCC
Q 011267 414 -----ETI-E------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQAS 470 (489)
Q Consensus 414 -----~~~-~------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~ 470 (489)
+.. . .++ ...+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.||
T Consensus 368 ~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~dl~~~~~~hP 446 (466)
T PRK06115 368 KAEGRAYKVGKFPFTANSRAKINHE-TEGFAKILADARTDEVLGVHMVGPSVSEMIGEFCVAMEFSASAEDIALTCHPHP 446 (466)
T ss_pred HHCCCCEEEEEEecccChhhHhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCccCCC
Confidence 010 0 111 1235666554 58999999877777776655 45678888876 3 4457899
Q ss_pred cHHHHHHHHHccCCcc
Q 011267 471 SVEEALEIARAALPVE 486 (489)
Q Consensus 471 ~~~e~~~~~~~~~~~~ 486 (489)
|++|.++.|++.+..+
T Consensus 447 t~~e~~~~a~~~~~~~ 462 (466)
T PRK06115 447 TRSEALRQAAMNVEGW 462 (466)
T ss_pred ChHHHHHHHHHHHhcc
Confidence 9999999999876654
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=336.24 Aligned_cols=395 Identities=18% Similarity=0.239 Sum_probs=269.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-ccccCCCCCCCCCCCCCCccc---cCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTC---VGSG 121 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~-~y~---~~~l-~~~~~~~~~~~~~~~~~~~~~---~~~~ 121 (489)
+.+||||||||+||++||..|++.|. +|+|||+++.. ... +.-. ++.++... ....++...... .-..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~g~---~V~lie~~~~~~GG~~~~~gcip~k~l~~~~-~~~~~~~~~~~~~~~~~~~ 77 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGW---RVALIEQSNAMYGGTCINIGCIPTKTLVHDA-QQHTDFVRAIQRKNEVVNF 77 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHCCC---eEEEEcCCCCccceeEeeccccchHHHHHHh-ccCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999986 69999987532 111 0000 11111110 000010000000 0000
Q ss_pred CCCCC-hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe-EEeeCcEEecCCCCCCCCCCCCCCC-CCceEeecCHHHHH
Q 011267 122 GERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGY-LPGVHYIRDVADAD 198 (489)
Q Consensus 122 ~~~~~-~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~-~i~yd~lvlATG~~~~~~p~~~g~~-~~gv~~~~~~~~~~ 198 (489)
..... ....+..+++++.+ ++..++.....|.+.++. ++.||+||||||++|. .|.++|.+ .++++. +.
T Consensus 78 ~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~-~p~i~G~~~~~~v~~------~~ 149 (441)
T PRK08010 78 LRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTV-VPPIPGITTTPGVYD------ST 149 (441)
T ss_pred HHHhHHHHHhhcCCcEEEEE-EEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCC-CCCCCCccCCCCEEC------hh
Confidence 00000 11122348999876 788888876777777775 6999999999999986 45556642 344433 23
Q ss_pred HHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 199 ALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 199 ~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++++ ++.|++++.
T Consensus 150 ~~~~~~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~gV~v~~-~~~v~~i~~ 227 (441)
T PRK08010 150 GLLNLKELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPR-EDRDIADNIATILRDQGVDIIL-NAHVERISH 227 (441)
T ss_pred HhhcccccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCC-cCHHHHHHHHHHHHhCCCEEEe-CCEEEEEEE
Confidence 33333345789999999999999999999999999999999999885 6899999999999999999999 999999985
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcc
Q 011267 279 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
+ ++.+ .+.++++ ++++|.|++|+|.+||+++ ++.+|++.+ +|+|.||+++||++|||||+|||+..+.
T Consensus 228 ~-~~~v-~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~------ 298 (441)
T PRK08010 228 H-ENQV-QVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTTADNIWAMGDVTGGLQ------ 298 (441)
T ss_pred c-CCEE-EEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc------
Confidence 4 3333 3555555 5999999999999999886 567888876 5779999999999999999999997543
Q ss_pred cccccHHHHHHHHHHHHHHHhcCCCC---CCCcCCceeeecccccCCCcceeeeeecCCcC-------c--EEE------
Q 011267 356 ARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--TIE------ 417 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~--~~~------ 417 (489)
..+ .|..+|+.++.||++.... .+..+|. ...++.+ +..+|.... + ...
T Consensus 299 --~~~--~a~~~~~~~~~~~~g~~~~~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~~ 365 (441)
T PRK08010 299 --FTY--ISLDDYRIVRDELLGEGKRSTDDRKNVPY--SVFMTPP-------LSRVGMTEEQARESGADIQVVTLPVAAI 365 (441)
T ss_pred --chh--HHHHHHHHHHHHHcCCCCcccCccCCCCE--EEECCCC-------ceeeeCCHHHHHHcCCCeEEEEEecCcC
Confidence 123 3778899999999863221 2234553 2222222 334444321 0 001
Q ss_pred -----EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHHH-HHHhcCCCCC-h-hhhcCCCcHHHHHHHHHc
Q 011267 418 -----IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVEEALEIARA 481 (489)
Q Consensus 418 -----~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~ 481 (489)
.++ ...+.++.++ +++|+|+++++.++.++.... .++.++.+++ . ..++.|||+.|.+..++.
T Consensus 366 ~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~ 438 (441)
T PRK08010 366 PRARVMND-TRGVLKAIVDNKTQRILGASLLCVDSHEMINIVKMVMDAGLPYSILRDQIFTHPSMSESLNDLFS 438 (441)
T ss_pred hhhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhccccCCchHHHHHHHHH
Confidence 111 1235666553 599999998777777766654 4568888876 2 445789999999998865
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-40 Score=337.66 Aligned_cols=403 Identities=20% Similarity=0.268 Sum_probs=270.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCCC------------C----CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLFP------------L----DKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~~------------~----~~~~~ 109 (489)
..+|||||||||||++||..|++.|. +|+|||++. +... .+--+|.++.. . .....
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~---~v~lie~~~-~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGL---KTALVEKGK-LGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC---eEEEEEccC-CCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 47899999999999999999999987 799999863 2111 01011111100 0 00000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCC-------CCEEEeCCC--eEEeeCcEEecCCCCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIE-------KQTLITNSG--KLLKYGSLIVATGCTASRF 177 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~-------~~~v~~~~g--~~i~yd~lvlATG~~~~~~ 177 (489)
++........ ........+.+++.+++++.+ ++..+|.. ..+|.+.+| .++.||+||||||++|..+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHG-IGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence 0000000000 000001123456679999986 78888887 556777777 5799999999999998644
Q ss_pred CCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHH
Q 011267 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (489)
Q Consensus 178 p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~ 257 (489)
|. ...++.+.+ +..+.. .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+
T Consensus 158 p~---~~~~~~~~~-~~~~~~---~~~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~-~~~~~~~~l~~ 229 (472)
T PRK05976 158 PG---LPFDGEYVI-SSDEAL---SLETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPT-EDAELSKEVAR 229 (472)
T ss_pred CC---CCCCCceEE-cchHhh---CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCc-CCHHHHHHHHH
Confidence 32 223332222 222222 22234689999999999999999999999999999999999885 78999999999
Q ss_pred HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCC
Q 011267 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRT 333 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t 333 (489)
.+++.||++++ +++|+++...+++.+..+.+.+| +++++|.+|+|+|.+|+++. ++..++..++|.+.||++++|
T Consensus 230 ~l~~~gI~i~~-~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g~i~Vd~~l~t 308 (472)
T PRK05976 230 LLKKLGVRVVT-GAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGGFIQIDDFCQT 308 (472)
T ss_pred HHHhcCCEEEe-CcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCCEEEECCCccc
Confidence 99999999999 99999997422334444555566 36999999999999999875 456677666678999999999
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 413 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~ 413 (489)
+.|+|||+|||+..+ ..+..|..+|+.++.+|.+.....+++....+...++.. +..+|....
T Consensus 309 s~~~IyAiGD~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~~~~p~-------~a~vG~te~ 371 (472)
T PRK05976 309 KERHIYAIGDVIGEP----------QLAHVAMAEGEMAAEHIAGKKPRPFDYAAIPACCYTDPE-------VASVGLTEE 371 (472)
T ss_pred CCCCEEEeeecCCCc----------ccHHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEECcCc-------eEEEeCCHH
Confidence 999999999998632 245569999999999998643233333222222222221 333343321
Q ss_pred -------cEE-------------EEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcC
Q 011267 414 -------ETI-------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQ 468 (489)
Q Consensus 414 -------~~~-------------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~ 468 (489)
+.. ..+. ...+.++.++ +++|+|++++..++.++... ..++.++.+++ . ..++.
T Consensus 372 ~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~ 450 (472)
T PRK05976 372 EAKEAGYDVKVGKFPFAANGKALTYGE-SDGFVKVVADRDTHDILGVQAVGPHVTELISEFALALELGARLWEVAGTIHP 450 (472)
T ss_pred HHHHcCCCEEEEEEECCcchhhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccc
Confidence 000 0111 1335555553 58999999877777776654 55678888886 3 34578
Q ss_pred CCcHHHHHHHHHccCC
Q 011267 469 ASSVEEALEIARAALP 484 (489)
Q Consensus 469 ~~~~~e~~~~~~~~~~ 484 (489)
|||+.|.++.|++++.
T Consensus 451 hPt~~e~~~~~~~~~~ 466 (472)
T PRK05976 451 HPTLSEAIQEAALAAD 466 (472)
T ss_pred CCChHHHHHHHHHHhh
Confidence 9999999999987653
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=336.74 Aligned_cols=398 Identities=21% Similarity=0.268 Sum_probs=270.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccC---------CCC------CCCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYL---------FPL------DKKPARLPG 113 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~---------~~~------~~~~~~~~~ 113 (489)
+|||||||||||++||..+++.|. +|+|||+++... .++ +--+|.++ ... .....++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~---~v~lie~~~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGA---SVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCcccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 699999999999999999999986 799999875211 000 00011100 000 000000000
Q ss_pred Ccc----ccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe-EEeeCcEEecCCCCCCCCCCCCCCCCCce
Q 011267 114 FHT----CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTASRFPEKIGGYLPGV 188 (489)
Q Consensus 114 ~~~----~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~-~i~yd~lvlATG~~~~~~p~~~g~~~~gv 188 (489)
... ...........+.+++.+++++.+ ++..++ .++|.+.+|. .+.||+||||||+.|. .|.++|.+..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g-~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~-~p~i~G~~~~~~ 153 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRG-RARFKD--PKTVKVDLGREVRGAKRFLIATGARPA-IPPIPGLKEAGY 153 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEE-EEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCC-CCCCCCcccCce
Confidence 000 000000011235567789999886 454443 5778887754 6899999999999986 455566443333
Q ss_pred EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
.+. +.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++...+.+.+++.||++++
T Consensus 154 ~~~------~~~~~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~l~~~gV~i~~ 226 (463)
T TIGR02053 154 LTS------EEALALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPR-EEPEISAAVEEALAEEGIEVVT 226 (463)
T ss_pred ECc------hhhhCcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCc-cCHHHHHHHHHHHHHcCCEEEc
Confidence 322 222222234689999999999999999999999999999999999985 7999999999999999999999
Q ss_pred cCceEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCCCCCeEEec
Q 011267 269 VGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 342 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~---~g~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~G 342 (489)
+++|++++.++++ ..+.+. +++++++|.||+|+|++|+++ + ++..+++.+ +|+|.||+++||+.|+|||+|
T Consensus 227 -~~~V~~i~~~~~~--~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~Ts~~~VyAiG 303 (463)
T TIGR02053 227 -SAQVKAVSVRGGG--KIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETLRTSNPGIYAAG 303 (463)
T ss_pred -CcEEEEEEEcCCE--EEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCccCCCCCEEEee
Confidence 9999999854332 234432 235799999999999999998 4 678888875 567999999999999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC-------
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 413 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------- 413 (489)
||+..+. .+..|..+|+.+|.||++.....+ ..+|+ ....+.+ +..+|....
T Consensus 304 D~~~~~~----------~~~~A~~~g~~aa~ni~~~~~~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a~~~g~ 364 (463)
T TIGR02053 304 DVTGGLQ----------LEYVAAKEGVVAAENALGGANAKLDLLVIPR--VVFTDPA-------VASVGLTEAEAQKAGI 364 (463)
T ss_pred ecCCCcc----------cHhHHHHHHHHHHHHhcCCCCCccCcCCCCe--EEeccCc-------eEEEeCCHHHHHhcCC
Confidence 9997532 445699999999999986423333 33443 2222221 444554321
Q ss_pred cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011267 414 ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 476 (489)
Q Consensus 414 ~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~ 476 (489)
+. ... . +....+.++.++ +++|+|+++++.++.++... ..++.++.+++ . .....|||+.|.+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~pt~~e~~ 444 (463)
T TIGR02053 365 ECDCRTLPLTNVPRARINRDTRGFIKLVAEPGTGKVLGVQVVAPEAAEVINEAALAIRAGMTVDDLIDTLHPFPTMAEGL 444 (463)
T ss_pred CeEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCChHHHH
Confidence 00 000 0 011235666554 59999999877788776666 45568888775 3 3346799999999
Q ss_pred HHHHccCCc
Q 011267 477 EIARAALPV 485 (489)
Q Consensus 477 ~~~~~~~~~ 485 (489)
..|++.+..
T Consensus 445 ~~a~~~~~~ 453 (463)
T TIGR02053 445 KLAAQTFYR 453 (463)
T ss_pred HHHHHHhhc
Confidence 999987653
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=317.80 Aligned_cols=405 Identities=23% Similarity=0.379 Sum_probs=313.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCC--CCCCh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG--ERQTP 127 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 127 (489)
++.-.+|||+|.+..+++..++.... +..+.+|+.++..||.||+|++.+++..++....--.|-.+.|... ++...
T Consensus 177 ~hvp~liigggtaAfaa~rai~s~da-~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd 255 (659)
T KOG1346|consen 177 KHVPYLIIGGGTAAFAAFRAIKSNDA-TAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPD 255 (659)
T ss_pred ccCceeEEcCCchhhhcccccccCCC-CceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCC
Confidence 35679999999999999998888765 7899999999999999999999888765544433223333333221 22222
Q ss_pred hHH---------HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCC---CCCCceEeecCHH
Q 011267 128 EWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG---GYLPGVHYIRDVA 195 (489)
Q Consensus 128 ~~~---------~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g---~~~~gv~~~~~~~ 195 (489)
.|| ..-|+.+..+.+|..||.+.+.|+++||.+|.||+++||||.+|..++.+.. .-...+.+++...
T Consensus 256 ~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~ 335 (659)
T KOG1346|consen 256 GFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA 335 (659)
T ss_pred cceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence 222 2338899999999999999999999999999999999999999987764422 1234567899999
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
|.+++...+.+.++|.|||+|++|.|+|+.|.+. |.+|.-+......+...+++-++++-.+.+++.||.++. |+
T Consensus 336 DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~p-na 414 (659)
T KOG1346|consen 336 DFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRP-NA 414 (659)
T ss_pred HHHHHHHhhhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceecc-ch
Confidence 9999988888889999999999999999999764 567887777778888888999999999999999999999 99
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecC--CcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 272 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV--GGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~--g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
.|..+.... +.+ .+.++||.++..|.||+|+|..||+++++..|++.|. ||+.||..++.. .|||++||++.+.+
T Consensus 415 ~v~sv~~~~-~nl-~lkL~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~ar-~NvwvAGdaacF~D 491 (659)
T KOG1346|consen 415 KVESVRKCC-KNL-VLKLSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELKAR-ENVWVAGDAACFED 491 (659)
T ss_pred hhhhhhhhc-cce-EEEecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheeecc-cceeeecchhhhhc
Confidence 999987543 333 5889999999999999999999999999999999873 899999999875 89999999999999
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeeccc---ccCCC---ccee-eeeecCCc----------
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFE---YEGSP---RKVW-WQFFGDNV---------- 412 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~---~~~~~---~~~~-~~~~G~~~---------- 412 (489)
...|++ |++||.+|+..|+.+..||.+ ...+|.....||++.-- |.+.- ..+. +..+-.+.
T Consensus 492 ~~LGrR-RVehhdhavvSGRLAGENMtg-Aakpy~hqsmFWsdlgP~igyeaIGlvDSSLpTVgVfA~p~s~~~~~~~se 569 (659)
T KOG1346|consen 492 GVLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYKHQSMFWSDLGPEIGYEAIGLVDSSLPTVGVFALPSSATRVDQLSE 569 (659)
T ss_pred ccccce-eccccccceeeceeccccccc-ccCCccccceeeeccCcccccceeeecccCCCcceeeeccccccchhhhhh
Confidence 888764 588999999999999999986 45678888899997432 11100 0000 00000000
Q ss_pred --C----cE------------------E----EEccCCCcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhcCCCCC
Q 011267 413 --G----ET------------------I----EIGNFDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 413 --~----~~------------------~----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (489)
+ +. + ..+...++-+.||++|++|||++| .|--..+...++.|..+...|
T Consensus 570 ~sdt~v~~~s~s~s~ss~~~~~~s~~~v~~~P~e~~~ygKgViFYl~d~~iVGilL-wN~Fnr~~~AR~II~d~kk~d 646 (659)
T KOG1346|consen 570 SSDTDVPETSTSSSQSSKSDAGASQDGVTCDPDEAGNYGKGVIFYLKDDKIVGILL-WNLFNRIGLARTIINDNKKYD 646 (659)
T ss_pred ccCCCCccccccccccccccCCcCCCCCccCcccccccCceEEEEecCCcEEEEEe-hhhhccchhhHHHhccccchh
Confidence 0 00 0 000112366889999999999997 666668888899988776654
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=335.70 Aligned_cols=410 Identities=16% Similarity=0.242 Sum_probs=267.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCCC---------------CCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPLD---------------KKPA 109 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~~---------------~~~~ 109 (489)
.+.++||+|||||+||++||..+++.|. +|+|||++..-. ...+--+|.++.... ....
T Consensus 45 ~~~~yDvvVIG~G~aG~~aA~~aa~~G~---~ValIEk~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~ 121 (561)
T PTZ00058 45 PRMVYDLIVIGGGSGGMAAARRAARNKA---KVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSF 121 (561)
T ss_pred CCccccEEEECcCHHHHHHHHHHHHcCC---eEEEEecccccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCcc
Confidence 3467899999999999999999999986 799999863211 011111221111100 0000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCC--------------------CEE------EeCCCeE
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--------------------QTL------ITNSGKL 160 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--------------------~~v------~~~~g~~ 160 (489)
+++....... ........+.+++.+++++.+. ..-++... .+| ...+|.+
T Consensus 122 d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~-a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~ 200 (561)
T PTZ00058 122 NLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGK-GSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV 200 (561)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEE-EEEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence 0000000000 0000112234566799998864 22222111 112 2346778
Q ss_pred EeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 161 LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 161 i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+.||+||||||+.|. .|.++|.+ .+ + + .+.+.+ +..+++++|||+|++|+|+|..+.++|.+|+++++.+
T Consensus 201 i~ad~lVIATGS~P~-~P~IpG~~--~v--~-t---s~~~~~-l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 201 IEGKNILIAVGNKPI-FPDVKGKE--FT--I-S---SDDFFK-IKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred EECCEEEEecCCCCC-CCCCCCce--eE--E-E---HHHHhh-ccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 999999999999986 45555421 11 2 1 233332 2348999999999999999999999999999999999
Q ss_pred cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEccCCCCCCchhh--hcC
Q 011267 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKPTVSPFE--RVG 317 (489)
Q Consensus 241 ~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~aD~vi~a~G~~p~~~~~~--~~g 317 (489)
++++ .+++++.+.+.+.|++.||++++ ++.+.+++.++++.+. +.+.+ ++++++|.|++++|++|+++++. ..+
T Consensus 271 ~il~-~~d~~i~~~l~~~L~~~GV~i~~-~~~V~~I~~~~~~~v~-v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~ 347 (561)
T PTZ00058 271 RLLR-KFDETIINELENDMKKNNINIIT-HANVEEIEKVKEKNLT-IYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALN 347 (561)
T ss_pred cccc-cCCHHHHHHHHHHHHHCCCEEEe-CCEEEEEEecCCCcEE-EEECCCCEEEECCEEEECcCCCCCccccCccccc
Confidence 9987 48999999999999999999999 9999999854333332 34434 45799999999999999998763 344
Q ss_pred CeecCCcEEeCCCCCCCCCCeEEeccccccCCc-----------------------cCCccc-ccccHHHHHHHHHHHHH
Q 011267 318 LNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK-----------------------MYDRTA-RVEHVDHARQSAQHCIK 373 (489)
Q Consensus 318 l~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~-----------------------~~~~~~-~~~~~~~A~~~g~~~a~ 373 (489)
+..++|+|.||+++||++|+|||+|||+..+.. ..+... .......|..+|+.+|.
T Consensus 348 ~~~~~G~I~VDe~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ 427 (561)
T PTZ00058 348 IKTPKGYIKVDDNQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLAD 427 (561)
T ss_pred eecCCCeEEECcCCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHH
Confidence 555567899999999999999999999983221 111111 24456779999999999
Q ss_pred HHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecCCcC--------cEEEE-----------------ccCCCcEE
Q 011267 374 ALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--------ETIEI-----------------GNFDPKIA 426 (489)
Q Consensus 374 ~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--------~~~~~-----------------~~~~~~~~ 426 (489)
||++... ..+..+|.. .|+.+- +..+|.+.. +.+.. +.....+.
T Consensus 428 ni~g~~~~~~~~~~ip~~---vft~pe------iA~vGlte~eA~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 498 (561)
T PTZ00058 428 RLFGPFSRTTNYKLIPSV---IFSHPP------IGTIGLSEQEAIDIYGKENVKIYESRFTNLFFSVYDMDPAQKEKTYL 498 (561)
T ss_pred HHhCCCCcccCCCCCCeE---EeCCch------heeeeCCHHHHHHhcCCCcEEEEEeecchhhhhhhcccccCCCCeEE
Confidence 9986422 234445543 333221 222332210 00000 01112355
Q ss_pred EEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCCcHHHHHHHHHccC
Q 011267 427 TFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEALEIARAAL 483 (489)
Q Consensus 427 ~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~ 483 (489)
++.++ +++|+|+++++.++.++... ..++.++.+++ ...++.|||+.|++..++.++
T Consensus 499 Kli~~~~t~~ILG~~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~~~hPt~~e~~~~~~~~~ 560 (561)
T PTZ00058 499 KLVCVGKEELIKGLHIVGLNADEILQGFAVALKMNATKADFDETIPIHPTAAEEFVTMAPWM 560 (561)
T ss_pred EEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhcccCCCChHHHHHHhccCC
Confidence 55553 59999999877777776655 55678888886 344578999999999988764
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=337.17 Aligned_cols=400 Identities=23% Similarity=0.316 Sum_probs=262.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC-CCCccccCCCC--------CCCCCCCCCCccc-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER-PALTKGYLFPL--------DKKPARLPGFHTC- 117 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~-~~l~~~~~~~~--------~~~~~~~~~~~~~- 117 (489)
.++||+||||||||++||.+|++.|. +|+|||++..-+ .++ +--+|.++... ......+......
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~G~---~V~lie~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~ 79 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQLGL---KTAVVEKKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFD 79 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccC
Confidence 45899999999999999999999986 799999863211 000 00011111000 0000000000000
Q ss_pred ----cCC------CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCCCCC
Q 011267 118 ----VGS------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL 185 (489)
Q Consensus 118 ----~~~------~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g~~~ 185 (489)
... .........++..+++++.+ +...++...-.+...+| .++.||+||||||+.|..+ |+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~---pg~~~ 155 (466)
T PRK07818 80 YGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHG-YGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL---PGTSL 155 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC---CCCCC
Confidence 000 00000011122346666654 33333333223443454 3689999999999998643 33322
Q ss_pred -CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCc
Q 011267 186 -PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (489)
Q Consensus 186 -~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv 264 (489)
..+... .+ .+ .....+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.|+++||
T Consensus 156 ~~~v~~~---~~--~~-~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~gV 228 (466)
T PRK07818 156 SENVVTY---EE--QI-LSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPN-EDAEVSKEIAKQYKKLGV 228 (466)
T ss_pred CCcEEch---HH--Hh-ccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCc-cCHHHHHHHHHHHHHCCC
Confidence 223322 21 11 11235789999999999999999999999999999999999985 799999999999999999
Q ss_pred EEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCC
Q 011267 265 KFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 337 (489)
Q Consensus 265 ~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 337 (489)
++++ +++|++++.+ ++.+ .+.+. +| +++++|.||+|+|++|++++ ++..|++.+ +|+|.||+++||++|+
T Consensus 229 ~i~~-~~~v~~i~~~-~~~~-~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~p~ 305 (466)
T PRK07818 229 KILT-GTKVESIDDN-GSKV-TVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYMRTNVPH 305 (466)
T ss_pred EEEE-CCEEEEEEEe-CCeE-EEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCcccCCCC
Confidence 9999 9999999753 2222 34443 56 37999999999999999886 678898875 5679999999999999
Q ss_pred eEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC---CCCcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 338 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH---TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 338 Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~---~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
|||+|||+..+ ..+..|..+|+.+|.||++.... .+..+|.. .|..+- +..+|....
T Consensus 306 IyAiGD~~~~~----------~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte~~ 366 (466)
T PRK07818 306 IYAIGDVTAKL----------QLAHVAEAQGVVAAETIAGAETLELGDYRMMPRA---TFCQPQ------VASFGLTEEQ 366 (466)
T ss_pred EEEEeecCCCc----------ccHhHHHHHHHHHHHHHcCCCCCccCccCCCCeE---EECCCC------eEEEeCCHHH
Confidence 99999998642 24556999999999999864322 34445542 221111 334454321
Q ss_pred ------cE--EE-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCC
Q 011267 414 ------ET--IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA 469 (489)
Q Consensus 414 ------~~--~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~ 469 (489)
+. .. .+. ...+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.|
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~Klv~~~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 445 (466)
T PRK07818 367 AREEGYDVKVAKFPFTANGKAHGLGD-PTGFVKLVADAKYGELLGGHLIGPDVSELLPELTLAQKWDLTAEELARNVHTH 445 (466)
T ss_pred HHhCCCcEEEEEEECCccchhhhcCC-CCeEEEEEEECCCCeEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCccCC
Confidence 00 00 111 1235566554 59999999877777776655 45578888876 3 445789
Q ss_pred CcHHHHHHHHHccCCcc
Q 011267 470 SSVEEALEIARAALPVE 486 (489)
Q Consensus 470 ~~~~e~~~~~~~~~~~~ 486 (489)
||+.|+++.|++.+..+
T Consensus 446 Pt~~e~~~~~~~~~~~~ 462 (466)
T PRK07818 446 PTLSEALKEAFHGLAGH 462 (466)
T ss_pred CchHHHHHHHHHHhhcC
Confidence 99999999999877654
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=345.91 Aligned_cols=334 Identities=20% Similarity=0.215 Sum_probs=243.1
Q ss_pred cccccceeeeeecceec--CCCCCceeee--ccccccccccccccc-------c-ccCCCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVA-------Y-SSFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~-------~-~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
...+||||..|||+|+. +|+++|++.. .++.+....|+..++ + .+...+.+||+||||||||++||..
T Consensus 79 ~~~~np~p~~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~ 158 (464)
T PRK12831 79 IAKYNALPAVCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGD 158 (464)
T ss_pred HHHhCCchhhhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHH
Confidence 35789999999999997 9999999987 677788888887763 1 1223467899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++..... +..+ .+ ..+++.- .......+++++.++++++++.+
T Consensus 159 l~~~G~---~V~v~e~~~~~GG~---l~~g--ip----~~~l~~~------~~~~~~~~~~~~~gv~i~~~~~v------ 214 (464)
T PRK12831 159 LAKMGY---DVTIFEALHEPGGV---LVYG--IP----EFRLPKE------TVVKKEIENIKKLGVKIETNVVV------ 214 (464)
T ss_pred HHhCCC---eEEEEecCCCCCCe---eeec--CC----CccCCcc------HHHHHHHHHHHHcCCEEEcCCEE------
Confidence 999987 79999987643210 0000 00 0111100 00122346778899999998654
Q ss_pred CCEEEeCCC-eEEeeCcEEecCCC-CCCCCCCCCCCCCCceEeecCHHHHHHHHH--------hhcCCCcEEEECCCHHH
Q 011267 150 KQTLITNSG-KLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYIG 219 (489)
Q Consensus 150 ~~~v~~~~g-~~i~yd~lvlATG~-~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvViG~G~~g 219 (489)
.+.+.+.+. ..+.||+|+||||+ .|+. +.++|.+.+++++..++.+...+.. ....+++|+|||+|++|
T Consensus 215 ~~~v~~~~~~~~~~~d~viiAtGa~~~~~-l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va 293 (464)
T PRK12831 215 GKTVTIDELLEEEGFDAVFIGSGAGLPKF-MGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVA 293 (464)
T ss_pred CCcCCHHHHHhccCCCEEEEeCCCCCCCC-CCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHH
Confidence 123333332 23579999999998 5764 5567877888887665544332221 12467999999999999
Q ss_pred HHHHHHHHhCCCcEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--------
Q 011267 220 MEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-------- 290 (489)
Q Consensus 220 ~e~A~~l~~~g~~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-------- 290 (489)
+|+|..+.++|.+|+++++.+. .++ ... ..+ +.+++.||++++ ++.++++..++++++.+|++.
T Consensus 294 ~d~A~~l~r~Ga~Vtlv~r~~~~~m~----a~~-~e~-~~a~~eGV~i~~-~~~~~~i~~~~~g~v~~v~~~~~~~~~~d 366 (464)
T PRK12831 294 MDAARTALRLGAEVHIVYRRSEEELP----ARV-EEV-HHAKEEGVIFDL-LTNPVEILGDENGWVKGMKCIKMELGEPD 366 (464)
T ss_pred HHHHHHHHHcCCEEEEEeecCcccCC----CCH-HHH-HHHHHcCCEEEe-cccceEEEecCCCeEEEEEEEEEEecCcC
Confidence 9999999999999999998653 222 111 122 335678999999 999999976556777665542
Q ss_pred ----------CCc--EEEcCEEEEccCCCCCCchhhh-cCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCccCCcc
Q 011267 291 ----------DGS--TIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 291 ----------~g~--~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
+|+ +++||.||+|+|..|++.++.. .|++.+ +|.+.||++ ++|+.|+|||+|||+..+.
T Consensus 367 ~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g~~------ 440 (464)
T PRK12831 367 ASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTGAA------ 440 (464)
T ss_pred CCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCCch------
Confidence 222 6999999999999999888876 688775 467999997 9999999999999986432
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011267 356 ARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 441 ----~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 441 ----TVILAMGAGKKAAKAIDE 458 (464)
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 455688999999888753
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=360.37 Aligned_cols=346 Identities=21% Similarity=0.256 Sum_probs=246.4
Q ss_pred cccccceeeeeecceecCCCCCceeee--ccccccccccccccc-------c--ccC-CCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA-------Y--SSF-ANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------~--~~~-~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
+..+||||..|||+|+.+|+.+|+|.. .++++....|+..+. . .+. ..+.++|+||||||||++||..
T Consensus 478 I~~~nPlP~icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~ 557 (1019)
T PRK09853 478 IYQRNALPAITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYF 557 (1019)
T ss_pred HHHhCChhhHhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHH
Confidence 457999999999999999999999987 788888888887653 1 121 2457899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++..... +. +..+.. +++ .+...+..+++.+.|+++++++.+ .+
T Consensus 558 Lar~G~---~VtV~Ek~~~~GG~---lr--~~IP~~----Rlp-------~evL~~die~l~~~GVe~~~gt~V-di--- 614 (1019)
T PRK09853 558 LARAGH---PVTVFEREENAGGV---VK--NIIPQF----RIP-------AELIQHDIEFVKAHGVKFEFGCSP-DL--- 614 (1019)
T ss_pred HHHcCC---eEEEEecccccCcc---ee--eecccc----ccc-------HHHHHHHHHHHHHcCCEEEeCcee-EE---
Confidence 999987 79999988764211 00 011111 111 000122346777889999998765 22
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEee-cCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHh
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~-~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~ 228 (489)
.+++.....||+||||||+.+...+.++|.+ +++... ..+.+..+.......+++|+|||||++|+|+|..+.+
T Consensus 615 ----~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~R 689 (1019)
T PRK09853 615 ----TVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALR 689 (1019)
T ss_pred ----EhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHh
Confidence 2233345679999999999854333444432 344322 1122222223334568999999999999999999888
Q ss_pred C-C-CcEEEEccCC-cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE----------------EEEEe
Q 011267 229 W-K-LDTTIIFPEN-HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV----------------AAVKL 289 (489)
Q Consensus 229 ~-g-~~V~lv~~~~-~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v----------------~~v~~ 289 (489)
. | .+|+++.+++ ..++. . .+.+.+.+ +.||+++. +..++++.. ++++ ..+..
T Consensus 690 lgGakeVTLVyRr~~~~MPA-~----~eEle~Al-eeGVe~~~-~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~t 760 (1019)
T PRK09853 690 VPGVEKVTVVYRRTKQEMPA-W----REEYEEAL-EDGVEFKE-LLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVET 760 (1019)
T ss_pred cCCCceEEEEEccCcccccc-c----HHHHHHHH-HcCCEEEe-CCceEEEEc--CCcEEEEEEEeecccCCCceEEeeC
Confidence 7 4 3899999876 33432 2 23344443 47999999 988888862 2322 11223
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
.++++++||.||+|+|.+|++++++..|++.+ +|.+.||++++|+.|+|||+|||+..+. .+..|+.+|
T Consensus 761 g~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDetlqTs~pgVFAaGD~a~Gp~----------tvv~Ai~qG 830 (1019)
T PRK09853 761 GETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDANGETSLTNVYMIGDVQRGPS----------TIVAAIADA 830 (1019)
T ss_pred CCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCCCcccCCCCEEEEeccccCch----------HHHHHHHHH
Confidence 34468999999999999999999999998875 4679999999999999999999986543 455799999
Q ss_pred HHHHHHHhcCCCCCCCcCCceeeecc
Q 011267 369 QHCIKALLSAQTHTYDYLPYFYSRVF 394 (489)
Q Consensus 369 ~~~a~~l~~~~~~~~~~~p~~~~~~~ 394 (489)
+.||.+|++.....+...|++|+..+
T Consensus 831 r~AA~nI~~~~~~~~~~~~~~~~~~~ 856 (1019)
T PRK09853 831 RRAADAILSREGIRSHQNDKYWNNVE 856 (1019)
T ss_pred HHHHHHHhhhcCCCcccccccccccc
Confidence 99999999765556777777777644
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=335.04 Aligned_cols=400 Identities=20% Similarity=0.283 Sum_probs=272.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCC------------C-------CCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL------------D-------KKP 108 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~------------~-------~~~ 108 (489)
++||+|||||++|+.||..+++.|. +|+|||++..-. ...+.-+|.++... . ...
T Consensus 1 ~~~vvviG~G~~G~~~a~~~~~~g~---~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 77 (466)
T PRK07845 1 MTRIVIIGGGPGGYEAALVAAQLGA---DVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEAR 77 (466)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCcccc
Confidence 4689999999999999999999986 799999875211 00111112111000 0 000
Q ss_pred CCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEe----CCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSID----IEKQTLITNSGK--LLKYGSLIVATGCTASRFPE 179 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id----~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~ 179 (489)
.++........ ........+.+++++++++.+ ++..++ ....+|.+.+|. ++.||+||+|||+.|..+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g-~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~ 156 (466)
T PRK07845 78 VDLPAVNARVKALAAAQSADIRARLEREGVRVIAG-RGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT 156 (466)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE-EEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC
Confidence 00000000000 000011234456779999986 666633 333455556665 79999999999999864432
Q ss_pred CCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHH
Q 011267 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259 (489)
Q Consensus 180 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l 259 (489)
++...+.+++..++.+. ...+++++|||+|.+|+|+|..|+++|.+|+++++.+++++. ++++..+.+.+.|
T Consensus 157 -~~~~~~~v~~~~~~~~~------~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~l~~~L 228 (466)
T PRK07845 157 -AEPDGERILTWRQLYDL------DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG-EDADAAEVLEEVF 228 (466)
T ss_pred -CCCCCceEEeehhhhcc------cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC-CCHHHHHHHHHHH
Confidence 22223345444333221 134689999999999999999999999999999999999985 7999999999999
Q ss_pred HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
+++||++++ ++++++++..+ +.+ .+.+.+|+++++|.|++++|++|++++ ++++|++.+ +|+|.||+++||+.|
T Consensus 229 ~~~gV~i~~-~~~v~~v~~~~-~~~-~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~~Ts~~ 305 (466)
T PRK07845 229 ARRGMTVLK-RSRAESVERTG-DGV-VVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVSRTSVP 305 (466)
T ss_pred HHCCcEEEc-CCEEEEEEEeC-CEE-EEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCcccCCC
Confidence 999999999 99999997543 333 467778889999999999999999986 688899876 467999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
||||+|||+..+. .+..|..+|..++.++++.... .+..+|. ..|..+- +..+|....
T Consensus 306 ~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~---~vf~~p~------~a~vGlte~~ 366 (466)
T PRK07845 306 GIYAAGDCTGVLP----------LASVAAMQGRIAMYHALGEAVSPLRLKTVAS---NVFTRPE------IATVGVSQAA 366 (466)
T ss_pred CEEEEeeccCCcc----------chhHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCCc------ceeecCCHHH
Confidence 9999999997432 4566999999999999864322 2333443 3332211 233343211
Q ss_pred ------c--EE-----------EEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCC
Q 011267 414 ------E--TI-----------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQA 469 (489)
Q Consensus 414 ------~--~~-----------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~ 469 (489)
+ .. ..+. ...+.++.++ +++|+|++++..++.++... ..++.++.+++ . ..++.|
T Consensus 367 a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~h 445 (466)
T PRK07845 367 IDSGEVPARTVMLPLATNPRAKMSGL-RDGFVKLFCRPGTGVVIGGVVVAPRASELILPIALAVQNRLTVDDLAQTFTVY 445 (466)
T ss_pred HHhCCCceEEEEEecccCchhhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCcCCC
Confidence 0 00 0111 1235666553 59999999877777776655 45678888886 3 445789
Q ss_pred CcHHHHHHHHHccCCc
Q 011267 470 SSVEEALEIARAALPV 485 (489)
Q Consensus 470 ~~~~e~~~~~~~~~~~ 485 (489)
||+.|++..+++.+..
T Consensus 446 Pt~~e~~~~~~~~~~~ 461 (466)
T PRK07845 446 PSLSGSITEAARRLMA 461 (466)
T ss_pred CCHHHHHHHHHHHhhc
Confidence 9999999999887654
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=345.19 Aligned_cols=332 Identities=21% Similarity=0.220 Sum_probs=243.1
Q ss_pred cccccceeeeeecceec--CCCCCceeee------ccccccccccccccc---------cccCCCCCCcEEEEcCchHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR------HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAG 64 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~------~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl 64 (489)
...+||||..|||+|+. +|+++|++.. .++.+....|+..++ +.+...+.++|+|||||+||+
T Consensus 67 ~~~~~p~p~~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl 146 (449)
T TIGR01316 67 IKTTSLLPAICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGL 146 (449)
T ss_pred HHHhCChhHHhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHH
Confidence 35789999999999998 9999998753 577788888777653 112334578999999999999
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEE
Q 011267 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVT 144 (489)
Q Consensus 65 ~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 144 (489)
+||..|++.|+ +|+|+|+++..... +..+ .+. .+++. .......+++.+.+++++.+..+
T Consensus 147 ~aA~~l~~~G~---~V~vie~~~~~GG~---l~~g--ip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v- 206 (449)
T TIGR01316 147 ACASELAKAGH---SVTVFEALHKPGGV---VTYG--IPE----FRLPK-------EIVVTEIKTLKKLGVTFRMNFLV- 206 (449)
T ss_pred HHHHHHHHCCC---cEEEEecCCCCCcE---eeec--CCC----ccCCH-------HHHHHHHHHHHhCCcEEEeCCcc-
Confidence 99999999987 79999997643211 0000 000 01100 00112335677889999988643
Q ss_pred EEeCCCCEEEeCCCeEEeeCcEEecCCC-CCCCCCCCCCCCCCceEeecCHHHHHHHHHh---------hcCCCcEEEEC
Q 011267 145 SIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYIRDVADADALISS---------LEKAKKVVVVG 214 (489)
Q Consensus 145 ~id~~~~~v~~~~g~~i~yd~lvlATG~-~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~---------~~~~~~vvViG 214 (489)
.+.+.+.+. ...||+||+|||+ .|. .+.++|.+.++++...++.+...+... ...+++++|||
T Consensus 207 -----~~~v~~~~~-~~~yd~viiAtGa~~p~-~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIG 279 (449)
T TIGR01316 207 -----GKTATLEEL-FSQYDAVFIGTGAGLPK-LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIG 279 (449)
T ss_pred -----CCcCCHHHH-HhhCCEEEEeCCCCCCC-cCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEEC
Confidence 234444433 2479999999998 565 455678777888776554433322211 23568999999
Q ss_pred CCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC----
Q 011267 215 GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---- 290 (489)
Q Consensus 215 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---- 290 (489)
+|++|+|+|..+.++|.+|+++++.++... + ......+.+++.||++++ ++.++++..++++++..|.+.
T Consensus 280 gG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~---~--~~~~~~~~l~~~GV~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~ 353 (449)
T TIGR01316 280 GGNTAVDSARTALRLGAEVHCLYRRTREDM---T--ARVEEIAHAEEEGVKFHF-LCQPVEIIGDEEGNVRAVKFRKMDC 353 (449)
T ss_pred CCHHHHHHHHHHHHcCCEEEEEeecCcccC---C--CCHHHHHHHHhCCCEEEe-ccCcEEEEEcCCCeEEEEEEEEEEe
Confidence 999999999999999999999998764211 1 112233567889999999 999999976556667666553
Q ss_pred -----CC-----------cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCC
Q 011267 291 -----DG-----------STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353 (489)
Q Consensus 291 -----~g-----------~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~ 353 (489)
+| +++++|.||+|+|..|++.+++.++++.+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 354 ~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts~~~VfA~GD~~~g~~---- 429 (449)
T TIGR01316 354 QEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTSIPGVFAGGDIILGAA---- 429 (449)
T ss_pred cCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCCCCccCCCCEEEecCCCCCcH----
Confidence 23 26999999999999999988888898876 5779999999999999999999986432
Q ss_pred cccccccHHHHHHHHHHHHHHHh
Q 011267 354 RTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 354 ~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+.+|+.+|.+|.
T Consensus 430 ------~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 430 ------TVIRAMGQGKRAAKSIN 446 (449)
T ss_pred ------HHHHHHHHHHHHHHHHH
Confidence 55679999999999885
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=340.43 Aligned_cols=397 Identities=19% Similarity=0.256 Sum_probs=268.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCCC------CCCCCCCCCCCccccC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP------LDKKPARLPGFHTCVG 119 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~~------~~~~~~~~~~~~~~~~ 119 (489)
..+|||||||||||++||..|++.|. +|+|||++. ++.. + +--+|.++.. ....... .+......
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~---~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~-~g~~~~~~ 171 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGA---RVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFD-GGIAATVP 171 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCc-ceeeccccCccccHHHHHHHHHHHHHhccccc-CCccCCCC
Confidence 46899999999999999999999987 799999873 2111 0 0001111000 0000000 01000000
Q ss_pred CCCC----------------CCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCC
Q 011267 120 SGGE----------------RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEK 180 (489)
Q Consensus 120 ~~~~----------------~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~ 180 (489)
.... ......+++. +++++.+ ++..++.....|.+.+|. ++.||+||||||++|. .|.+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~i 249 (561)
T PRK13748 172 TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHG-EARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPA-VPPI 249 (561)
T ss_pred ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCC-CCCC
Confidence 0000 0011223444 7899886 777788776677766663 6999999999999986 4555
Q ss_pred CCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHH
Q 011267 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260 (489)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~ 260 (489)
+|.+. ..++.+. ........+++++|||+|++|+|+|..|.++|.+|+++++. .+++. +++++++.+.+.++
T Consensus 250 ~g~~~--~~~~~~~----~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~-~~l~~-~d~~~~~~l~~~l~ 321 (561)
T PRK13748 250 PGLKE--TPYWTST----EALVSDTIPERLAVIGSSVVALELAQAFARLGSKVTILARS-TLFFR-EDPAIGEAVTAAFR 321 (561)
T ss_pred CCCCc--cceEccH----HHhhcccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC-ccccc-cCHHHHHHHHHHHH
Confidence 55322 1122211 12222235789999999999999999999999999999885 56664 79999999999999
Q ss_pred hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCC
Q 011267 261 QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPG 337 (489)
Q Consensus 261 ~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~ 337 (489)
+.||++++ ++.+++++.+ ++.+ .+.+.++ ++++|.||+|+|++||+++ ++.+|++.+ +|+|.||+++||++||
T Consensus 322 ~~gI~i~~-~~~v~~i~~~-~~~~-~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts~~~ 397 (561)
T PRK13748 322 AEGIEVLE-HTQASQVAHV-DGEF-VLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTSVPH 397 (561)
T ss_pred HCCCEEEc-CCEEEEEEec-CCEE-EEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccCCCC
Confidence 99999999 9999999754 3332 3555555 6999999999999999986 578899886 4679999999999999
Q ss_pred eEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 338 IFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 338 Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
|||+|||+..+. ....|..+|+.+|.||++.. ..+ ...|. ...++.+ +..+|....
T Consensus 398 IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~-~~~~~~~~p~--~~~~~p~-------~a~vGlte~~a 457 (561)
T PRK13748 398 IYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGD-AALDLTAMPA--VVFTDPQ-------VATVGYSEAEA 457 (561)
T ss_pred EEEeeecCCCcc----------chhHHHHHHHHHHHHHcCCC-cccCCCCCCe--EEEccCC-------ceeeeCCHHHH
Confidence 999999997543 23358889999999998643 233 33453 2222222 334454321
Q ss_pred -----cE--EE--E--------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCc
Q 011267 414 -----ET--IE--I--------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASS 471 (489)
Q Consensus 414 -----~~--~~--~--------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~ 471 (489)
+. .. . ......+.++.++ +++|+|+++++..+.++... ..++..+.+++ . ..++.|||
T Consensus 458 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt 537 (561)
T PRK13748 458 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSGRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLT 537 (561)
T ss_pred HHcCCCeEEEEEecccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcccccCCc
Confidence 00 00 0 0112346666664 69999999877677776655 45678888886 3 44578999
Q ss_pred HHHHHHHHHccCCc
Q 011267 472 VEEALEIARAALPV 485 (489)
Q Consensus 472 ~~e~~~~~~~~~~~ 485 (489)
+.|+++.|++.+..
T Consensus 538 ~~e~~~~~~~~~~~ 551 (561)
T PRK13748 538 MVEGLKLAAQTFNK 551 (561)
T ss_pred hHHHHHHHHHHhhc
Confidence 99999999976644
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-40 Score=340.55 Aligned_cols=394 Identities=20% Similarity=0.249 Sum_probs=270.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC---------CCCCC----CCCCCccccCC-------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE---------AYAPY----ERPALTKGYLF------------- 102 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~---------~~~~y----~~~~l~~~~~~------------- 102 (489)
..++||+|||+|+||+.||..+++.|. +|+|||+. ..+.. ..+--+|.++.
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~---~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~ 153 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGA---SAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRG 153 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhh
Confidence 346899999999999999999999987 79999951 11110 00000111110
Q ss_pred -CCC---CCCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 103 -PLD---KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 103 -~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
... ....++........ ..........+++.+++++.+ ++..+++ ++|.+ +|+++.||+||||||++|.
T Consensus 154 ~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G-~a~~vd~--~~V~v-~G~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 154 FGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEG-RGKIVDP--HTVDV-DGKLYTARNILIAVGGRPF 229 (558)
T ss_pred cCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEccC--CEEEE-CCEEEECCEEEEeCCCCCC
Confidence 000 00001100000000 000011223345678999986 6777776 45655 6778999999999999986
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.|.++| +... .+++.+......+++++|||+|++|+|+|..|..+|.+|+++++.+++++ .+++++.+.+
T Consensus 230 -~P~IpG-----~~~v---~~~~~~l~~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~-~~d~~~~~~l 299 (558)
T PLN02546 230 -IPDIPG-----IEHA---IDSDAALDLPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR-GFDEEVRDFV 299 (558)
T ss_pred -CCCCCC-----hhhc---cCHHHHHhccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc-ccCHHHHHHH
Confidence 455444 2222 23344444344679999999999999999999999999999999999887 4899999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFR 332 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~ 332 (489)
.+.|+++||++++ ++.++++...+++.+ .+.+.+++...+|.|++++|++|++++ ++++|++.+ +|+|.||+++|
T Consensus 300 ~~~L~~~GV~i~~-~~~v~~i~~~~~g~v-~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~ 377 (558)
T PLN02546 300 AEQMSLRGIEFHT-EESPQAIIKSADGSL-SLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR 377 (558)
T ss_pred HHHHHHCCcEEEe-CCEEEEEEEcCCCEE-EEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce
Confidence 9999999999999 999999975444443 455666655568999999999999986 588899886 46799999999
Q ss_pred CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecC
Q 011267 333 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 410 (489)
Q Consensus 333 t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~ 410 (489)
|++|+|||+|||+..+. .+..|..+|+.+|.||++... ..|..+|+ ..|+.+. +..+|.
T Consensus 378 Ts~p~IYAaGDv~~~~~----------l~~~A~~~g~~~a~~i~g~~~~~~~~~~vp~---~vft~Pe------ia~VGl 438 (558)
T PLN02546 378 TSVPSIWAVGDVTDRIN----------LTPVALMEGGALAKTLFGNEPTKPDYRAVPS---AVFSQPP------IGQVGL 438 (558)
T ss_pred eCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCcCCCCCCCE---EEeCCch------HhhccC
Confidence 99999999999996432 345699999999999986432 23455664 3555421 222333
Q ss_pred CcC-------cEE------------EEccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhh
Q 011267 411 NVG-------ETI------------EIGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL 466 (489)
Q Consensus 411 ~~~-------~~~------------~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~ 466 (489)
... +.. ..+.....+.++.++ +++|+|++++..++.++... ..+|.++.+++ . ..+
T Consensus 439 te~eA~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~t~~ILGa~ivG~~a~elI~~~a~ai~~~~t~~dl~~~~ 518 (558)
T PLN02546 439 TEEQAIEEYGDVDVFTANFRPLKATLSGLPDRVFMKLIVCAKTNKVLGVHMCGEDAPEIIQGFAVAVKAGLTKADFDATV 518 (558)
T ss_pred CHHHHHHcCCCeEEEEEecccchhhhhCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcc
Confidence 211 000 011112336666553 59999999877788776655 45678888886 3 445
Q ss_pred cCCCcHHHHHHHHH
Q 011267 467 QQASSVEEALEIAR 480 (489)
Q Consensus 467 ~~~~~~~e~~~~~~ 480 (489)
+.|||+.|.+..++
T Consensus 519 ~~hPT~~E~~~~~~ 532 (558)
T PLN02546 519 GIHPTAAEEFVTMR 532 (558)
T ss_pred cCCCChHHHHHHHh
Confidence 78999999998886
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=331.55 Aligned_cols=308 Identities=20% Similarity=0.267 Sum_probs=237.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
+++++|||||||+||+.+|++|.+. +.+|||||+++++.|. |.++. +...... ...+ ......
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~~~~~-~~l~~-~~~g~~~-~~~~-----------~~~~~~ 70 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNHMLFT-PLLPQ-TTTGTLE-FRSI-----------CEPVRP 70 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCCcchh-hhHHH-hcccCCC-hHHh-----------HHHHHH
Confidence 4678999999999999999999654 4589999999988764 55442 2221111 1111 011234
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEe----------CCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLIT----------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD 198 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~----------~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~ 198 (489)
.+...+++++. .+|++||++++.|.+ .+|.+++||+||||||+.+. .+.+||.. +..+.++++.++.
T Consensus 71 ~~~~~~~~~i~-~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~-~~~ipG~~-e~~~~~~~~~~a~ 147 (424)
T PTZ00318 71 ALAKLPNRYLR-AVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPN-TFNIPGVE-ERAFFLKEVNHAR 147 (424)
T ss_pred HhccCCeEEEE-EEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccC-CCCCCCHH-HcCCCCCCHHHHH
Confidence 45567888887 599999999999888 56778999999999999986 35555542 3455678888877
Q ss_pred HHHHhhc-----------------CCCcEEEECCCHHHHHHHHHHHh--------------CCCcEEEEccCCcchhhhh
Q 011267 199 ALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVG--------------WKLDTTIIFPENHLLQRLF 247 (489)
Q Consensus 199 ~~~~~~~-----------------~~~~vvViG~G~~g~e~A~~l~~--------------~g~~V~lv~~~~~~l~~~~ 247 (489)
++++.+. ..++++|||+|++|+|+|..|.. .+.+|+++++.+++++ .+
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~-~~ 226 (424)
T PTZ00318 148 GIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG-SF 226 (424)
T ss_pred HHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc-cC
Confidence 7655431 12489999999999999999875 3688999999999998 58
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEE
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQ 326 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~ 326 (489)
++.+.+.+.+.|++.||++++ +++|+++..+ .|.+++|+++++|.+|+++|.+|+ ++++.++++.+ +|+|.
T Consensus 227 ~~~~~~~~~~~L~~~gV~v~~-~~~v~~v~~~------~v~~~~g~~i~~d~vi~~~G~~~~-~~~~~~~l~~~~~G~I~ 298 (424)
T PTZ00318 227 DQALRKYGQRRLRRLGVDIRT-KTAVKEVLDK------EVVLKDGEVIPTGLVVWSTGVGPG-PLTKQLKVDKTSRGRIS 298 (424)
T ss_pred CHHHHHHHHHHHHHCCCEEEe-CCeEEEEeCC------EEEECCCCEEEccEEEEccCCCCc-chhhhcCCcccCCCcEE
Confidence 999999999999999999999 9999999732 477889999999999999999998 68888888875 57899
Q ss_pred eCCCCC-CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCcee
Q 011267 327 VDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFY 390 (489)
Q Consensus 327 vd~~~~-t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~ 390 (489)
||+++| +++|||||+|||+..+.... ..++..|..||..+|+||.+.........||.|
T Consensus 299 Vd~~l~~~~~~~IfAiGD~a~~~~~~~-----~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~ 358 (424)
T PTZ00318 299 VDDHLRVKPIPNVFALGDCAANEERPL-----PTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY 358 (424)
T ss_pred eCCCcccCCCCCEEEEeccccCCCCCC-----CCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence 999999 59999999999998653211 235677999999999999753222113455544
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=324.72 Aligned_cols=399 Identities=18% Similarity=0.209 Sum_probs=265.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCCC-------CCCCCCCC----CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP-------LDKKPARL----PG 113 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~~-------~~~~~~~~----~~ 113 (489)
..++|++|||+|+||+++|..|++.|. +|++||+++..... + +--++.++.. .......+ +.
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~~g~---~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAEHGA---RVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 346899999999999999999999986 79999987432211 0 1011111000 00000000 00
Q ss_pred C--ccccC------CCCC-CCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCCC
Q 011267 114 F--HTCVG------SGGE-RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 114 ~--~~~~~------~~~~-~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~ 181 (489)
+ ..... .... ......++.. +++++.+ ++.-++.....|.+.+|. ++.||+||||||+.|. .|.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~p~i~ 168 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKG-YARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPT-IPPIP 168 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCC-CCCCC
Confidence 0 00000 0000 0112233333 7888876 455566555566666663 6999999999999986 45555
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|..... ++.+ .+.+. ....+++++|||+|++|+|+|..|.++|.+|+++++. ++++. +++++.+.+.+.+++
T Consensus 169 G~~~~~--~~~~---~~~l~-~~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~-~~l~~-~d~~~~~~l~~~L~~ 240 (479)
T PRK14727 169 GLMDTP--YWTS---TEALF-SDELPASLTVIGSSVVAAEIAQAYARLGSRVTILARS-TLLFR-EDPLLGETLTACFEK 240 (479)
T ss_pred CcCccc--eecc---hHHhc-cccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC-CCCCc-chHHHHHHHHHHHHh
Confidence 532111 1211 11121 1234689999999999999999999999999999875 66664 799999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCe
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 338 (489)
.||++++ ++++++++..++ .+ .+.+.++ ++++|.||+|+|++||+++ ++.+|++.+ +|+|.||+++||++|+|
T Consensus 241 ~GV~i~~-~~~V~~i~~~~~-~~-~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~~Ts~~~I 316 (479)
T PRK14727 241 EGIEVLN-NTQASLVEHDDN-GF-VLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAMETSAPDI 316 (479)
T ss_pred CCCEEEc-CcEEEEEEEeCC-EE-EEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCeecCCCCE
Confidence 9999999 999999975432 22 3555555 6999999999999999986 577888876 56799999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcCc--
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-- 414 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-- 414 (489)
||+|||+..+. ....|..+|+.+|.||++.. ..+ ...|+ ...++.+ +..+|....+
T Consensus 317 yA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~-~~~~~~~~p~--~~~~~p~-------ia~vGlte~~a~ 376 (479)
T PRK14727 317 YAAGDCSDLPQ----------FVYVAAAAGSRAGINMTGGN-ATLDLSAMPA--VIFTDPQ-------VATVGLSEAKAH 376 (479)
T ss_pred EEeeecCCcch----------hhhHHHHHHHHHHHHHcCCC-cccccccCCc--EEEecCc-------eeeeeCCHHHHH
Confidence 99999997543 23358889999999998643 333 33453 2222221 3444543210
Q ss_pred -----E--EE----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcH
Q 011267 415 -----T--IE----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSV 472 (489)
Q Consensus 415 -----~--~~----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~ 472 (489)
. .. .......+.+++++ +++|+|++++..++.++... ..++..+.+++ . ...+.|||+
T Consensus 377 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~ 456 (479)
T PRK14727 377 LSGIETISRVLTMENVPRALANFETDGFIKLVAEEGTRKLIGAQILAHEGGELIQSAALAIHNRMTVEELADQLFPYLTM 456 (479)
T ss_pred HcCCceEEEEEEcccCchhhhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhcCCccCCCh
Confidence 0 00 01011235666654 59999999877777776655 45678888876 3 445789999
Q ss_pred HHHHHHHHccCC
Q 011267 473 EEALEIARAALP 484 (489)
Q Consensus 473 ~e~~~~~~~~~~ 484 (489)
+|++..|++.+.
T Consensus 457 ~E~~~~~~~~~~ 468 (479)
T PRK14727 457 VEGLKLCAQTFR 468 (479)
T ss_pred HHHHHHHHHhhh
Confidence 999999997553
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-38 Score=323.46 Aligned_cols=393 Identities=20% Similarity=0.260 Sum_probs=266.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccC--------------CCC--CCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYL--------------FPL--DKKPARL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~--------------~~~--~~~~~~~ 111 (489)
++|+||||||++|.+||.. +.|. +|+|||++..-. +.-+--+|.++ +.. .....++
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~---~V~lie~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 75 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADK---RIAIVEKGTFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRW 75 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCC---eEEEEeCCCCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCH
Confidence 3799999999999998865 4464 799999864211 11111112111 000 0000111
Q ss_pred CCCcccc---CCCCCC-CChhH-HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 112 PGFHTCV---GSGGER-QTPEW-YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 112 ~~~~~~~---~~~~~~-~~~~~-~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
....... -..... ....+ +++.|++++.+ ++..+ +.++|.+.+|+++.||+||||||++|. .|..++....
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~--~~~~V~v~~g~~~~~d~lViATGs~p~-~p~i~g~~~~ 151 (451)
T PRK07846 76 PDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRG-HARFI--GPKTLRTGDGEEITADQVVIAAGSRPV-IPPVIADSGV 151 (451)
T ss_pred HHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEE-EEEEe--cCCEEEECCCCEEEeCEEEEcCCCCCC-CCCCCCcCCc
Confidence 0000000 000001 12233 56789999987 44444 568888888888999999999999996 4555553322
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
.+ .+.++...+ ...+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+ +.||++
T Consensus 152 ~~---~~~~~~~~l---~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~-~~d~~~~~~l~~l~-~~~v~i 223 (451)
T PRK07846 152 RY---HTSDTIMRL---PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLR-HLDDDISERFTELA-SKRWDV 223 (451)
T ss_pred cE---EchHHHhhh---hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHH-hcCeEE
Confidence 22 223333332 23578999999999999999999999999999999999987 47999988887655 568999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh--hhcCCeec-CCcEEeCCCCCCCCCCeEEecc
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD 343 (489)
++ ++++++++.++ +.+ .+.+.+|+++++|.|++|+|++|+++++ +.++++.+ +|+|.||+++||++|||||+||
T Consensus 224 ~~-~~~v~~i~~~~-~~v-~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~Ts~p~IyA~GD 300 (451)
T PRK07846 224 RL-GRNVVGVSQDG-SGV-TLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRTSAEGVFALGD 300 (451)
T ss_pred Ee-CCEEEEEEEcC-CEE-EEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcccCCCCEEEEee
Confidence 99 99999997543 333 4677788899999999999999999884 67888885 5679999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC-------
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------- 413 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------- 413 (489)
|+..+. ....|..+|+.++.||++... ..+..+|+. .|..+- +..+|....
T Consensus 301 ~~~~~~----------l~~~A~~~g~~~a~ni~~~~~~~~~~~~~~p~~---if~~p~------ia~vGlte~~a~~~g~ 361 (451)
T PRK07846 301 VSSPYQ----------LKHVANHEARVVQHNLLHPDDLIASDHRFVPAA---VFTHPQ------IASVGLTENEARAAGL 361 (451)
T ss_pred cCCCcc----------ChhHHHHHHHHHHHHHcCCCCccccCCCCCCeE---EECCCC------cEeEeCCHHHHHhcCC
Confidence 997532 234588999999999986422 234455653 232211 334443321
Q ss_pred cEEE-------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-hhh--hcCCCcHHH
Q 011267 414 ETIE-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEE 474 (489)
Q Consensus 414 ~~~~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~e 474 (489)
+... .++ ...+.++.++ +++|+|++++..++.++... ..+|.++.+++ ... ...|||+.|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~-~~g~~Kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e 440 (451)
T PRK07846 362 DITVKVQNYGDVAYGWAMED-TTGFVKLIADRDTGRLLGAHIIGPQASTLIQPLIQAMSFGLDAREMARGQYWIHPALPE 440 (451)
T ss_pred CEEEEEEecCcchhhhhCCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCCccCCcHHH
Confidence 0000 111 1235566554 59999999877777776655 45678888886 443 368999999
Q ss_pred HHHHHHccC
Q 011267 475 ALEIARAAL 483 (489)
Q Consensus 475 ~~~~~~~~~ 483 (489)
+++.|++.+
T Consensus 441 ~~~~a~~~~ 449 (451)
T PRK07846 441 VVENALLGL 449 (451)
T ss_pred HHHHHHHhc
Confidence 999998754
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=322.20 Aligned_cols=371 Identities=20% Similarity=0.305 Sum_probs=274.1
Q ss_pred HHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCC-ChhHHHHCCcEEEeCCcE
Q 011267 65 YAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ-TPEWYKEKGIEMIYQDPV 143 (489)
Q Consensus 65 ~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~V 143 (489)
+||++|++.+. +.+|||||+++.+.|....++. +..........+ ... ..+++.+.+++++++++|
T Consensus 1 saA~~l~~~~~-~~~Vtlid~~~~~~~~~~~l~~-~~~g~~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~V 67 (427)
T TIGR03385 1 SAASRVRRLDK-ESDIIVFEKTEDVSFANCGLPY-VIGGVIDDRNKL-----------LAYTPEVFIKKRGIDVKTNHEV 67 (427)
T ss_pred CHHHHHHhhCC-CCcEEEEEcCCceeEEcCCCCe-EeccccCCHHHc-----------ccCCHHHHHHhcCCeEEecCEE
Confidence 47899998764 7799999999987665434432 211110100000 112 234568899999888999
Q ss_pred EEEeCCCCEEEeCC---CeEEe--eCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh--cCCCcEEEECCC
Q 011267 144 TSIDIEKQTLITNS---GKLLK--YGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL--EKAKKVVVVGGG 216 (489)
Q Consensus 144 ~~id~~~~~v~~~~---g~~i~--yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~--~~~~~vvViG~G 216 (489)
+.+|++.+++.+.+ +.++. ||+||||||++|. .|..+|.+.++++.+++..++..++..+ ..+++++|||+|
T Consensus 68 ~~id~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~-~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG 146 (427)
T TIGR03385 68 IEVNDERQTVVVRNNKTNETYEESYDYLILSPGASPI-VPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGG 146 (427)
T ss_pred EEEECCCCEEEEEECCCCCEEecCCCEEEECCCCCCC-CCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCC
Confidence 99999888887753 45677 9999999999987 4556776567788888888888877766 457899999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEE
Q 011267 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296 (489)
Q Consensus 217 ~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~ 296 (489)
++|+|+|..|++.|.+|+++++.+.++...+++++.+.+.+.+++.||++++ ++.|+++.. ++.+ +.+.+|++++
T Consensus 147 ~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~--~~~~--v~~~~g~~i~ 221 (427)
T TIGR03385 147 YIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRL-NEEVDSIEG--EERV--KVFTSGGVYQ 221 (427)
T ss_pred HHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEe-CCEEEEEec--CCCE--EEEcCCCEEE
Confidence 9999999999999999999999988854467889999999999999999999 999999974 3333 4667888999
Q ss_pred cCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 297 ADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 297 aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
+|.+|+++|.+|++++++.++++.+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..||+.+|+||
T Consensus 222 ~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni 301 (427)
T TIGR03385 222 ADMVILATGIKPNSELAKDSGLKLGETGAIWVNEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENI 301 (427)
T ss_pred eCEEEECCCccCCHHHHHhcCcccCCCCCEEECCCcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHh
Confidence 9999999999999999999999876 577999999999999999999999876554443333447778999999999999
Q ss_pred hcCCCCCCCcC-CceeeecccccCCCcceeeeeecCCcCc---------EEEEcc---------CCCcEEEEEEE--CCE
Q 011267 376 LSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIEIGN---------FDPKIATFWID--SGK 434 (489)
Q Consensus 376 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~G~~~~~---------~~~~~~---------~~~~~~~~~~~--~~~ 434 (489)
.+. ...|... +..+...++.+ +..+|....+ ...... ....+.++.++ +++
T Consensus 302 ~g~-~~~~~~~~~~~~~~~~~~~-------~a~vG~t~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~g~~kli~~~~~~~ 373 (427)
T TIGR03385 302 AGN-DIEFKGVLGTNITKFFDLT-------IASTGVTENEAKKLNIDYKTVFVKAKTHANYYPGNSPLHLKLIYEKDTRR 373 (427)
T ss_pred cCC-CCCCCCcceeeEEEEcCeE-------EEEecCCHHHHHHCCCCeEEEEEecCCCCCcCCCCceEEEEEEEECCCCe
Confidence 864 3445432 23334444432 5566653220 111110 01125666664 599
Q ss_pred EEEEEeccCC-HHHhHHH-HHHHhcCCCCC
Q 011267 435 LKGVLVESGS-PEEFQLL-PTLARSQPFVD 462 (489)
Q Consensus 435 ~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~ 462 (489)
|+|+++++.+ +.++... ..++.++.+++
T Consensus 374 ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~ 403 (427)
T TIGR03385 374 ILGAQAVGKEGADKRIDVLAAAIMAGLTVK 403 (427)
T ss_pred EEEEEEEccccHHHHHHHHHHHHHCCCCHH
Confidence 9999986666 6665544 55677887765
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=329.02 Aligned_cols=394 Identities=19% Similarity=0.249 Sum_probs=263.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCC--------CCCCC----CCCCCccccCCCC-------CCCC-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKE--------AYAPY----ERPALTKGYLFPL-------DKKP- 108 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~--------~~~~y----~~~~l~~~~~~~~-------~~~~- 108 (489)
.++||+|||||++|..||..+++. |. +|+|||++ ..+.- .-+--+|.++... ....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~---~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~ 78 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKK---RVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGF 78 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCC---EEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhcc
Confidence 468999999999999999999996 65 79999974 11111 1111112111000 0000
Q ss_pred ----------CCCCCCccccC---CCCCCCChhHHHH-CCcEEEeCCcEEEEeCCCCEEEeCC--------CeEEeeCcE
Q 011267 109 ----------ARLPGFHTCVG---SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTLITNS--------GKLLKYGSL 166 (489)
Q Consensus 109 ----------~~~~~~~~~~~---~~~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~~v~~~~--------g~~i~yd~l 166 (489)
.++........ ........+++++ .+++++.+ +..-++ .++|...+ .+++.||+|
T Consensus 79 gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G-~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~l 155 (486)
T TIGR01423 79 GWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLG-WGALED--KNVVLVRESADPKSAVKERLQAEHI 155 (486)
T ss_pred CeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE-EEEEcc--CCEEEEeeccCCCCCcceEEECCEE
Confidence 00000000000 0000011123444 48999987 443333 45665531 247999999
Q ss_pred EecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcch
Q 011267 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL 243 (489)
Q Consensus 167 vlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l 243 (489)
|||||++|. .|.++|.+ .+ .+..+. ......+++++|||+|++|+|+|..+..+ |.+|+++++.++++
T Consensus 156 IIATGs~p~-~p~i~G~~--~~---~~~~~~---~~~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il 226 (486)
T TIGR01423 156 LLATGSWPQ-MLGIPGIE--HC---ISSNEA---FYLDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL 226 (486)
T ss_pred EEecCCCCC-CCCCCChh--he---echhhh---hccccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 999999986 45444421 12 222222 22224578999999999999999877655 89999999999999
Q ss_pred hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec
Q 011267 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS 321 (489)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~ 321 (489)
+ .+++++.+.+.+.|++.||++++ ++.++++...+++. ..+.+.+|+++++|.|++++|++|++++ ++.++++.+
T Consensus 227 ~-~~d~~~~~~l~~~L~~~GI~i~~-~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~ 303 (486)
T TIGR01423 227 R-GFDSTLRKELTKQLRANGINIMT-NENPAKVTLNADGS-KHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELT 303 (486)
T ss_pred c-ccCHHHHHHHHHHHHHcCCEEEc-CCEEEEEEEcCCce-EEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceEC
Confidence 7 48999999999999999999999 99999998543332 3567778889999999999999999986 467888875
Q ss_pred -CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccC
Q 011267 322 -VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEG 398 (489)
Q Consensus 322 -~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~ 398 (489)
+|.|.||+++||++|||||+|||+..+. ....|..+|+.++.||++.... .+..+|. ..|..+-
T Consensus 304 ~~G~I~Vd~~l~Ts~~~IyA~GDv~~~~~----------l~~~A~~qG~~aa~ni~g~~~~~~~~~~vp~---~vft~pe 370 (486)
T TIGR01423 304 KKGAIQVDEFSRTNVPNIYAIGDVTDRVM----------LTPVAINEGAAFVDTVFGNKPRKTDHTRVAS---AVFSIPP 370 (486)
T ss_pred CCCCEecCCCCcCCCCCEEEeeecCCCcc----------cHHHHHHHHHHHHHHHhCCCCcccCCCCCCE---EEeCCCc
Confidence 5679999999999999999999986432 3344899999999999864322 2334554 3343321
Q ss_pred CCcceeeeeecCCcCc-------EE-E-----------EccC-CCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHH
Q 011267 399 SPRKVWWQFFGDNVGE-------TI-E-----------IGNF-DPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLA 455 (489)
Q Consensus 399 ~~~~~~~~~~G~~~~~-------~~-~-----------~~~~-~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~ 455 (489)
+..+|....+ .. . .+.. ...+.++.++ +++|+|++++..++.++... ..++
T Consensus 371 ------ia~vGlte~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Klv~d~~~~~iLGa~ivg~~a~elI~~~~~ai 444 (486)
T TIGR01423 371 ------IGTCGLVEEDAAKKFEKVAVYESSFTPLMHNISGSKYKKFVAKIVTNHADGTVLGVHLLGDSSPEIIQAVGICL 444 (486)
T ss_pred ------eEEeeCCHHHHHhcCCceEEEEEeeCchhhhhccCccCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 2334432210 00 0 0111 1235566553 58999999877777776655 4567
Q ss_pred hcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 456 RSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 456 ~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
..+.+++ . ..++.|||++|++..+.
T Consensus 445 ~~~~t~~dl~~~~~~hPt~sE~~~~~~ 471 (486)
T TIGR01423 445 KLNAKISDFYNTIGVHPTSAEELCSMR 471 (486)
T ss_pred HcCCCHHHHhhcccCCCCcHHHHHhhc
Confidence 8888886 3 44588999999999986
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-39 Score=326.83 Aligned_cols=393 Identities=17% Similarity=0.205 Sum_probs=260.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC-CCC---CCCC-ccccCCCCCCCCCCCCCCcccc---CCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA-PYE---RPAL-TKGYLFPLDKKPARLPGFHTCV---GSG 121 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~-~y~---~~~l-~~~~~~~~~~~~~~~~~~~~~~---~~~ 121 (489)
+++|||||||||||++||..|++.|. +|+|||+++.. ... +.-. ++.++.... ...++....... ...
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~g~---~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGK---KVALVEESKAMYGGTCINIGCIPTKTLLVAAE-KNLSFEQVMATKNTVTSR 77 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCC---EEEEEecCCcccceeeecCccccchHhhhhhh-cCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999986 79999998632 111 0001 111111100 000110000000 000
Q ss_pred CCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC---CeEEeeCcEEecCCCCCCCCCCCCCC-CCCceEeecCHHHH
Q 011267 122 GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADA 197 (489)
Q Consensus 122 ~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~---g~~i~yd~lvlATG~~~~~~p~~~g~-~~~gv~~~~~~~~~ 197 (489)
......+.+.+.+++++.+ ++..+ +.++|.+.+ ..++.||+||||||++|.. |.++|. +.+++++ +
T Consensus 78 ~~~~~~~~~~~~gV~~~~g-~~~~~--~~~~v~v~~~~~~~~~~~d~vViATGs~~~~-p~i~G~~~~~~v~~------~ 147 (438)
T PRK07251 78 LRGKNYAMLAGSGVDLYDA-EAHFV--SNKVIEVQAGDEKIELTAETIVINTGAVSNV-LPIPGLADSKHVYD------S 147 (438)
T ss_pred HHHHHHHHHHhCCCEEEEE-EEEEc--cCCEEEEeeCCCcEEEEcCEEEEeCCCCCCC-CCCCCcCCCCcEEc------h
Confidence 0011224456778998876 34333 456665543 2468999999999999874 555553 2333332 2
Q ss_pred HHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 198 ~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
..+......+++++|||+|++|+|+|..+++.|.+|+++++.++++++ +++++.+.+.+.+++.||++++ +++|++++
T Consensus 148 ~~~~~~~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~GI~i~~-~~~V~~i~ 225 (438)
T PRK07251 148 TGIQSLETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR-EEPSVAALAKQYMEEDGITFLL-NAHTTEVK 225 (438)
T ss_pred HHHhcchhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC-CCHHHHHHHHHHHHHcCCEEEc-CCEEEEEE
Confidence 333333345789999999999999999999999999999999999885 6889999999999999999999 99999998
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
.+ ++.+ .+. .+|+++++|.+|+|+|.+|+++. ++..++..+ +|++.||+++||+.|||||+|||+..+.
T Consensus 226 ~~-~~~v-~v~-~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~~t~~~~IyaiGD~~~~~~----- 297 (438)
T PRK07251 226 ND-GDQV-LVV-TEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYCQTSVPGVFAVGDVNGGPQ----- 297 (438)
T ss_pred ec-CCEE-EEE-ECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCcccCCCCEEEeeecCCCcc-----
Confidence 53 3333 233 45678999999999999999876 455677664 4679999999999999999999996433
Q ss_pred ccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC-------cE----EEEc-
Q 011267 355 TARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET----IEIG- 419 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~----~~~~- 419 (489)
....|..+++.++.++++... ..+..+|.. ..++.+ +..+|.... +. ....
T Consensus 298 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~p~-------ia~vGlte~~a~~~g~~~~~~~~~~~~ 363 (438)
T PRK07251 298 -----FTYISLDDFRIVFGYLTGDGSYTLEDRGNVPTT--MFITPP-------LSQVGLTEKEAKEAGLPYAVKELLVAA 363 (438)
T ss_pred -----cHhHHHHHHHHHHHHHcCCCCccccccCCCCEE--EECCCc-------eEeeeCCHHHHHhcCCCeEEEEEECCc
Confidence 122377788888888876432 122334542 222221 333443211 00 0000
Q ss_pred -------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 420 -------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 420 -------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
.....+.++.++ +++|+|+++++.++.++... ..++.++.+++ . ..++.|||+.|++..+-
T Consensus 364 ~~~~~~~~~~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 436 (438)
T PRK07251 364 MPRAHVNNDLRGAFKVVVNTETKEILGATLFGEGSQEIINLITMAMDNKIPYTYFKKQIFTHPTMAENLNDLF 436 (438)
T ss_pred chhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcccccCCChHHHHHHHh
Confidence 001225566553 59999999877777776655 45578888876 2 44578999999998764
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=335.01 Aligned_cols=320 Identities=19% Similarity=0.269 Sum_probs=223.1
Q ss_pred cEEEeCCcEEEEeCCCCEEEe-CCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEE
Q 011267 135 IEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (489)
Q Consensus 135 i~~~~~~~V~~id~~~~~v~~-~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVi 213 (489)
++++.+ ...-++ .++|.. .+|+++.||+||||||+.|.. |...+.+.+.+++. .++..+. ..+++++||
T Consensus 249 v~vi~G-~a~f~~--~~~v~v~~~g~~i~ad~lIIATGS~P~~-P~~~~~~~~~V~ts---~d~~~l~---~lpk~VvIV 318 (659)
T PTZ00153 249 VQVIYE-RGHIVD--KNTIKSEKSGKEFKVKNIIIATGSTPNI-PDNIEVDQKSVFTS---DTAVKLE---GLQNYMGIV 318 (659)
T ss_pred eEEEEe-EEEEec--CCeEEEccCCEEEECCEEEEcCCCCCCC-CCCCCCCCCcEEeh---HHhhhhh---hcCCceEEE
Confidence 566654 322222 344544 367789999999999999973 43333223344433 3333332 247899999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHH-HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-
Q 011267 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQNGVKFVKVGASIKNLEAGSDGRVAAVKLED- 291 (489)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l-~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~- 291 (489)
|+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ ++.||++++ ++.|++++..+++....+.+.+
T Consensus 319 GgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~-~d~eis~~l~~~ll~~~GV~I~~-~~~V~~I~~~~~~~~v~v~~~~~ 396 (659)
T PTZ00153 319 GMGIIGLEFMDIYTALGSEVVSFEYSPQLLPL-LDADVAKYFERVFLKSKPVRVHL-NTLIEYVRAGKGNQPVIIGHSER 396 (659)
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEeccCccccc-CCHHHHHHHHHHHhhcCCcEEEc-CCEEEEEEecCCceEEEEEEecc
Confidence 99999999999999999999999999999984 8999999988875 679999999 9999999854433322343321
Q ss_pred ------C--------cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCC------CCCeEEeccccccCC
Q 011267 292 ------G--------STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTR------MPGIFAIGDVAAFPL 349 (489)
Q Consensus 292 ------g--------~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~------~~~Iya~GD~a~~~~ 349 (489)
+ +++++|.|++|+|++||++. ++..+++.++|+|.||++|||+ +|+|||+|||+..+.
T Consensus 397 ~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~~gi~~~~G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~ 476 (659)
T PTZ00153 397 QTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDKLKIQMKRGFVSVDEHLRVLREDQEVYDNIFCIGDANGKQM 476 (659)
T ss_pred ccccccccccccccceEEEcCEEEEEECcccCCccCCchhcCCcccCCEEeECCCCCcCCCCCCCCCCEEEEEecCCCcc
Confidence 1 37999999999999999987 4778888777779999999997 699999999985321
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhcCC------------CC--CCCcCCceeeecccccCCCcceeeeeecCCcCc-
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLSAQ------------TH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE- 414 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~------------~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~- 414 (489)
....|..||+.++++|.+.. .. .|..+|.. .|..+- +.++|....+
T Consensus 477 ----------La~~A~~qg~~aa~ni~g~~~~~~~~~~~~~~~~~~~~~~iP~~---ift~Pe------iA~VGlTE~eA 537 (659)
T PTZ00153 477 ----------LAHTASHQALKVVDWIEGKGKENVNINVENWASKPIIYKNIPSV---CYTTPE------LAFIGLTEKEA 537 (659)
T ss_pred ----------CHHHHHHHHHHHHHHHcCCCccccccccccccccccccCcCCEE---EECcCc------eEEeeCCHHHH
Confidence 33468999999999998642 11 23345541 111110 2223322110
Q ss_pred ---------------------EEEEcc---------------------CCCcEEEEEEE--CCEEEEEEeccCCHHHhHH
Q 011267 415 ---------------------TIEIGN---------------------FDPKIATFWID--SGKLKGVLVESGSPEEFQL 450 (489)
Q Consensus 415 ---------------------~~~~~~---------------------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~ 450 (489)
....++ ....+.++.++ +++|+|++++..++.++..
T Consensus 538 ~~~g~~~~v~v~~~~~~~~~ra~~~~~~~~p~~~~~~~y~~g~~~~~~~~~G~vKli~d~~t~rILGa~ivG~~A~elI~ 617 (659)
T PTZ00153 538 KELYPPDNVGVEISFYKANSKVLCENNISFPNNSKNNSYNKGKYNTVDNTEGMVKIVYLKDTKEILGMFIVGSYASILIH 617 (659)
T ss_pred HhcCCCcceEEEEEEecccchhhhccccccccccccccccccccccccCCceEEEEEEECCCCeEEEEEEECCCHHHHHH
Confidence 000000 02335666553 5999999987778888776
Q ss_pred HH-HHHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCc
Q 011267 451 LP-TLARSQPFVD-K-AKLQQASSVEEALEIARAALPV 485 (489)
Q Consensus 451 ~~-~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~~~ 485 (489)
.. .+|..+.+++ . ..++.|||+.|.+..|++++.+
T Consensus 618 ~~a~aI~~~~tv~dl~~~~~~hPT~sE~~~~a~~~~~~ 655 (659)
T PTZ00153 618 EGVLAINLKLSVKDLAHMVHSHPTISEVLDAAFKAIAG 655 (659)
T ss_pred HHHHHHHCCCCHHHHhhCcCCCCChHHHHHHHHHHHHh
Confidence 64 4568888886 3 4457899999999999988753
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=325.18 Aligned_cols=401 Identities=20% Similarity=0.275 Sum_probs=268.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-ccccCCCCC-------CCCCCC----CCC-
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYLFPLD-------KKPARL----PGF- 114 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~~~l-~~~~~~~~~-------~~~~~~----~~~- 114 (489)
.+||+|||||+||++||.+|++.|. +|+|||+ +...-. +.-. ++.++.... .....+ ..+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~---~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 76 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGL---KVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD 76 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCC---eEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence 3899999999999999999999886 7999998 332211 1000 111110000 000000 000
Q ss_pred -ccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC-eEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 115 -HTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 115 -~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g-~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
..... .........++++.+++++.+ ++..++.....+...+| .++.||+||+|||+.|..+| .+ ...+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~-~~-~~~~ 153 (461)
T TIGR01350 77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKG-EAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLP-GP-FDFD 153 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCC-CC-CCCC
Confidence 00000 000001123445678999886 56666655545555554 47999999999999987433 22 1122
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
+. .+.+..+. ......+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 154 ~~-~~~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~~~~~l~~~gi~i 228 (461)
T TIGR01350 154 GE-VVITSTGA---LNLKEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPG-EDAEVSKVVAKALKKKGVKI 228 (461)
T ss_pred Cc-eEEcchHH---hccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCC-CCHHHHHHHHHHHHHcCCEE
Confidence 22 12222333 222235789999999999999999999999999999999999884 88999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCc--hhhhcCCeec-CCcEEeCCCCCCCCCCeEEe
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQFRTRMPGIFAI 341 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~ 341 (489)
++ +++|++++.+ ++.+ .+.+.+| +++++|.+|+|+|.+|+++ +++..++..+ +|.+.||+++||+.|+|||+
T Consensus 229 ~~-~~~v~~i~~~-~~~v-~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~l~t~~~~Iyai 305 (461)
T TIGR01350 229 LT-NTKVTAVEKN-DDQV-VYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEYMRTNVPGIYAI 305 (461)
T ss_pred Ee-CCEEEEEEEe-CCEE-EEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCCcccCCCCEEEe
Confidence 99 9999999754 3333 3566666 4799999999999999998 6788898886 46799999999999999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC------
Q 011267 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 413 (489)
Q Consensus 342 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------ 413 (489)
|||+..+. ....|..+|+.+|.+|.+.....+ ...|.. ..++.. +..+|....
T Consensus 306 GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~--~~~~~~-------~a~vG~~~~~a~~~g 366 (461)
T TIGR01350 306 GDVIGGPM----------LAHVASHEGIVAAENIAGKEPAPIDYDAVPSC--IYTDPE-------VASVGLTEEQAKEAG 366 (461)
T ss_pred eecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCCeE--EecCCc-------eEEEeCCHHHHHhCC
Confidence 99996432 455699999999999986432233 334432 222211 223333211
Q ss_pred -cE--EEE----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCCcHHHH
Q 011267 414 -ET--IEI----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQASSVEEA 475 (489)
Q Consensus 414 -~~--~~~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~e~ 475 (489)
+. ... .+....+.++.++ +++|+|++++..++.++... ..++.++.+++ ...+..+|++.|.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~P~~~e~ 446 (461)
T TIGR01350 367 YDVKIGKFPFAANGKALALGETDGFVKIIADKKTGEILGAHIIGPHATELISEAVLAMELELTVEELAKTIHPHPTLSEA 446 (461)
T ss_pred CCeEEEEEeCccchHHHhcCCCceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcccCCCHHHH
Confidence 00 000 0111235565554 59999999877777776655 45678888886 2346789999999
Q ss_pred HHHHHccCCc
Q 011267 476 LEIARAALPV 485 (489)
Q Consensus 476 ~~~~~~~~~~ 485 (489)
++.+++++..
T Consensus 447 ~~~~~~~~~~ 456 (461)
T TIGR01350 447 IKEAALAALG 456 (461)
T ss_pred HHHHHHHhcc
Confidence 9999987654
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=320.06 Aligned_cols=396 Identities=20% Similarity=0.230 Sum_probs=261.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC--------CCC---C-CCCCccccCCC-----CCCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY--------APY---E-RPALTKGYLFP-----LDKKPARLPG 113 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~--------~~y---~-~~~l~~~~~~~-----~~~~~~~~~~ 113 (489)
++|+||||+|+||+.||..+++.|. +|++||+... ... + -+--+|.++.. .......+ +
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~---~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~-g 77 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGA---KVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNY-G 77 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhc-C
Confidence 4799999999999999999999986 7999996311 110 0 01011111100 00000000 0
Q ss_pred Ccccc--CCC--------------CCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCC
Q 011267 114 FHTCV--GSG--------------GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 114 ~~~~~--~~~--------------~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~ 175 (489)
+.... ..+ .......+++..+++++.+ +..-+++..-.|...+| .++.||+||||||++|.
T Consensus 78 ~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G-~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~ 156 (484)
T TIGR01438 78 WNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA-YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPR 156 (484)
T ss_pred cccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCCC
Confidence 00000 000 0011123456779999886 55556654323332333 36999999999999986
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.|.++|.. + ... +.+.+......+++++|||+|++|+|+|..|+++|.+|+++++ +++++ .+++++++.+
T Consensus 157 -~p~ipG~~-~---~~~---~~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~-~~~l~-~~d~~~~~~l 226 (484)
T TIGR01438 157 -YPGIPGAK-E---LCI---TSDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVR-SILLR-GFDQDCANKV 226 (484)
T ss_pred -CCCCCCcc-c---eee---cHHHhhcccccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEe-ccccc-ccCHHHHHHH
Confidence 45445431 1 111 2333333334568999999999999999999999999999987 46776 5899999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEccCCCCCCch--hhhcCCeec--CCcEEeC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS--VGGIQVD 328 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~--~g~i~vd 328 (489)
.+.|++.||++++ ++.++++...+ +. ..+.+.++ +++++|.|++|+|++||+++ ++..|++.+ +|+|.||
T Consensus 227 ~~~L~~~gV~i~~-~~~v~~v~~~~-~~-~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd 303 (484)
T TIGR01438 227 GEHMEEHGVKFKR-QFVPIKVEQIE-AK-VKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPAD 303 (484)
T ss_pred HHHHHHcCCEEEe-CceEEEEEEcC-Ce-EEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecC
Confidence 9999999999999 99999987543 33 24566555 37999999999999999987 578888875 3679999
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeee
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQ 406 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~ 406 (489)
+++||+.|+|||+|||+.... .....|..+|+.+|+||++... ..|..+|+. .|..+- +.
T Consensus 304 ~~~~Ts~p~IyA~GDv~~~~~---------~l~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---i~~~p~------ia 365 (484)
T TIGR01438 304 EEEQTNVPYIYAVGDILEDKQ---------ELTPVAIQAGRLLAQRLFSGSTVICDYENVPTT---VFTPLE------YG 365 (484)
T ss_pred CCcccCCCCEEEEEEecCCCc---------cchHHHHHHHHHHHHHHhcCCCcccccccCCeE---EeCCCc------ee
Confidence 999999999999999996321 1345589999999999986432 234555543 232221 23
Q ss_pred eecCCcC---------cE-EEEccC-------------CCcEEEEEE-E--CCEEEEEEeccCCHHHhHHH-HHHHhcCC
Q 011267 407 FFGDNVG---------ET-IEIGNF-------------DPKIATFWI-D--SGKLKGVLVESGSPEEFQLL-PTLARSQP 459 (489)
Q Consensus 407 ~~G~~~~---------~~-~~~~~~-------------~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~ 459 (489)
.+|.... .. +....+ ...+.++.+ + +++|+|++++..++.++... ..+|.++.
T Consensus 366 ~vGlte~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~t~~ILG~~ivg~~a~e~I~~~a~ai~~~~ 445 (484)
T TIGR01438 366 ACGLSEEKAVEKFGEENIEVFHSYFWPLEWTIPSRDNSNKCYAKAVCNRKENERVVGFHVVGPNAGEVTQGFAAALRCGL 445 (484)
T ss_pred eecCCHHHHHHhcCCCcEEEEEeecchhhhHhhCCCccCCcEEEEEEecCCCCeEEEEEEECCCHHHHHHHHHHHHHcCC
Confidence 3443211 00 000000 123455543 2 58999999877777776655 45678888
Q ss_pred CCC-h-hhhcCCCcHHHHHHHHHcc
Q 011267 460 FVD-K-AKLQQASSVEEALEIARAA 482 (489)
Q Consensus 460 ~~~-~-~~~~~~~~~~e~~~~~~~~ 482 (489)
+++ . ..++.|||+.|++..++..
T Consensus 446 t~~dl~~~~~~hPt~sE~~~~~~~~ 470 (484)
T TIGR01438 446 TKKDLDNTIGIHPVCAEVFTTLSVT 470 (484)
T ss_pred CHHHHhhhhcCCCChHHHHHHhhhh
Confidence 876 3 3457899999999999865
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=318.58 Aligned_cols=317 Identities=23% Similarity=0.303 Sum_probs=231.1
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEE
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVV 212 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvV 212 (489)
.+++++.+..+. . +.++|.+.+|.++.||+||||||++|.. |...+ ..++. +.+..+...+. ..+++++|
T Consensus 105 ~gv~~~~g~~~~-~--~~~~V~~~~g~~~~~d~lIiATGs~p~~-p~~~~--~~~~~-~~~~~~~~~l~---~~~k~vvV 174 (452)
T TIGR03452 105 PNIDVYDGHARF-V--GPRTLRTGDGEEITGDQIVIAAGSRPYI-PPAIA--DSGVR-YHTNEDIMRLP---ELPESLVI 174 (452)
T ss_pred CCeEEEEEEEEE-e--cCCEEEECCCcEEEeCEEEEEECCCCCC-CCCCC--CCCCE-EEcHHHHHhhh---hcCCcEEE
Confidence 799999875433 2 5688888888889999999999999864 43222 22333 23444444432 34789999
Q ss_pred ECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC
Q 011267 213 VGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG 292 (489)
Q Consensus 213 iG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g 292 (489)
||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+ +.||++++ +++|++++.++ +.+ .+.+.+|
T Consensus 175 IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~-~d~~~~~~l~~~~-~~gI~i~~-~~~V~~i~~~~-~~v-~v~~~~g 249 (452)
T TIGR03452 175 VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRH-LDEDISDRFTEIA-KKKWDIRL-GRNVTAVEQDG-DGV-TLTLDDG 249 (452)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEEccCccccc-cCHHHHHHHHHHH-hcCCEEEe-CCEEEEEEEcC-CeE-EEEEcCC
Confidence 999999999999999999999999999998874 7999988887755 46899999 99999998543 333 4667788
Q ss_pred cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 293 STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
+++++|.|++++|++|++++ ++.+|++.+ +|+|.||+++||++|+|||+|||+..+. ....|..+|+
T Consensus 250 ~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~~IyA~GD~~~~~~----------l~~~A~~~g~ 319 (452)
T TIGR03452 250 STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGRTSARGVWALGDVSSPYQ----------LKHVANAEAR 319 (452)
T ss_pred CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcccCCCCEEEeecccCccc----------ChhHHHHHHH
Confidence 89999999999999999987 567888885 4679999999999999999999997432 2234889999
Q ss_pred HHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC-------cE-EEEc-----------cCCCcEEE
Q 011267 370 HCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET-IEIG-----------NFDPKIAT 427 (489)
Q Consensus 370 ~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~-~~~~-----------~~~~~~~~ 427 (489)
.+|.||++... ..+..+|.. .|..+- +..+|.... +. +..- .....+.+
T Consensus 320 ~~a~ni~~~~~~~~~~~~~~p~~---i~t~p~------ia~vGlte~ea~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~K 390 (452)
T TIGR03452 320 VVKHNLLHPNDLRKMPHDFVPSA---VFTHPQ------IATVGLTEQEAREAGHDITVKIQNYGDVAYGWAMEDTTGFCK 390 (452)
T ss_pred HHHHHhcCCCCcccCCCCCCCeE---EECCCC------eeeeeCCHHHHHhcCCCeEEEEecCCchhhHhhcCCCCeEEE
Confidence 99999986432 233445643 222110 333443321 00 0000 01123556
Q ss_pred EEEE--CCEEEEEEeccCCHHHhHHHH-HHHhcCCCCC-hhh--hcCCCcHHHHHHHHHccC
Q 011267 428 FWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-KAK--LQQASSVEEALEIARAAL 483 (489)
Q Consensus 428 ~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~--~~~~~~~~e~~~~~~~~~ 483 (489)
+.++ +++|+|++++..++.++.... .++.++.+++ ... ++.|||+.|+++.|++++
T Consensus 391 lv~d~~t~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~hPt~~e~~~~a~~~~ 452 (452)
T TIGR03452 391 LIADRDTGKLLGAHIIGPQASSLIQPLITAMAFGLDAREMARKQYWIHPALPEVVENALLGL 452 (452)
T ss_pred EEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhhCCcccCCchHHHHHHHHhcC
Confidence 6553 699999998777777766554 4578888886 433 468999999999998764
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=323.54 Aligned_cols=397 Identities=18% Similarity=0.223 Sum_probs=264.6
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCC--------------CC----CCCCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLF--------------PL----DKKPARL 111 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~--------------~~----~~~~~~~ 111 (489)
+|||||||+||++||..+++.|. +|+|||+++... ...+--+|.++. .. .....++
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~---~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGK---NVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 79999999999999999999886 799999875321 011111121110 00 0000000
Q ss_pred CCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC-eEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g-~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
........ ..........+++.+++++.+ ++..++.....|...++ .++.||+||||||++|..+| .++.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p-~~~~~~~~ 156 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQG-KASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELP-FAPFDGKW 156 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCC-CCCCCCCe
Confidence 00000000 000001122345668999886 66667765555655555 46999999999999987444 33322222
Q ss_pred eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
+... .........+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.+++.||+++
T Consensus 157 v~~~------~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~-~d~e~~~~l~~~L~~~GI~i~ 229 (458)
T PRK06912 157 IINS------KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPG-EDEDIAHILREKLENDGVKIF 229 (458)
T ss_pred EEcc------hHHhCccccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCcc-ccHHHHHHHHHHHHHCCCEEE
Confidence 3222 222232335789999999999999999999999999999999999885 789999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCCCCCeEEecc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD 343 (489)
+ +++|++++.+ +..+ .+.. +| +++++|.||+|+|.+|+++. ++..|++.+++++.||+++||+.|||||+||
T Consensus 230 ~-~~~V~~i~~~-~~~v-~~~~-~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~gi~Vd~~~~ts~~~VyA~GD 305 (458)
T PRK06912 230 T-GAALKGLNSY-KKQA-LFEY-EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGD 305 (458)
T ss_pred E-CCEEEEEEEc-CCEE-EEEE-CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCCEEeCCCeecCCCCEEEEee
Confidence 9 9999999743 2222 2332 34 36999999999999999875 4677888776679999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC-------cE
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET 415 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~ 415 (489)
|+..+. ....|..+|+.+|.++.+... ..+..+|.. .|..+- +..+|.... +.
T Consensus 306 ~~~~~~----------la~~A~~~g~~aa~~~~g~~~~~~~~~~p~~---v~~~p~------~a~vGlte~~a~~~g~~~ 366 (458)
T PRK06912 306 VIGGIQ----------LAHVAFHEGTTAALHASGEDVKVNYHAVPRC---IYTSPE------IASVGLTEKQAREQYGDI 366 (458)
T ss_pred cCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCcCCCCeE---EecCch------hEEeeCCHHHHHHCCCCe
Confidence 996322 345699999999999986432 123445542 121110 223333211 00
Q ss_pred EE-------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHH
Q 011267 416 IE-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALE 477 (489)
Q Consensus 416 ~~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~ 477 (489)
.. .+. ...+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.|||+.|+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~-~~g~~kli~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~ 445 (458)
T PRK06912 367 RIGEFPFTANGKALIIGE-QTGKVKVIVEPKYQEIVGISIIGPRATELIGQGTVMIHTEVTADIMEDFIAAHPTLSEAIH 445 (458)
T ss_pred EEEEEecCcchhHhhcCC-CceEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcccCCCHHHHHH
Confidence 00 111 1235666554 58999999877777776654 45678888876 2 44678999999999
Q ss_pred HHHccCCc
Q 011267 478 IARAALPV 485 (489)
Q Consensus 478 ~~~~~~~~ 485 (489)
.|++.+..
T Consensus 446 ~~~~~~~~ 453 (458)
T PRK06912 446 EALLQAVG 453 (458)
T ss_pred HHHHHhhc
Confidence 99876543
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=324.41 Aligned_cols=397 Identities=20% Similarity=0.269 Sum_probs=261.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCC----------------CCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF----------------PLDKKP 108 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~----------------~~~~~~ 108 (489)
|+++||||||||+||++||..|++.|. +|+|||++. .... .+-.+|.++. ......
T Consensus 1 m~~yDvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~ 76 (460)
T PRK06292 1 MEKYDVIVIGAGPAGYVAARRAAKLGK---KVALIEKGP-LGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPK 76 (460)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCc-cccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 356999999999999999999999986 799999843 2211 1111111110 000000
Q ss_pred CCCCCCccccC---CCCCCCC-hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQT-PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY 184 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~-~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~ 184 (489)
.++........ ....... ...++..+++++.+ ++..++. +.+.+ ++.++.||+||+|||+. .|.++|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~--~~v~v-~~~~~~~d~lIiATGs~---~p~ipg~~ 149 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKG-TARFVDP--NTVEV-NGERIEAKNIVIATGSR---VPPIPGVW 149 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEE-EEEEccC--CEEEE-CcEEEEeCEEEEeCCCC---CCCCCCCc
Confidence 00000000000 0000001 12234457777764 4444444 45555 67789999999999998 23333321
Q ss_pred ---CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 185 ---LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 185 ---~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
...+++ .+........+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++
T Consensus 150 ~~~~~~~~~------~~~~~~~~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~~~~l~~ 222 (460)
T PRK06292 150 LILGDRLLT------SDDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPL-EDPEVSKQAQKILSK 222 (460)
T ss_pred ccCCCcEEC------chHHhCccccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcc-hhHHHHHHHHHHHhh
Confidence 122222 2222222245789999999999999999999999999999999999884 899999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
. |++++ ++++++++.+++..+ .+++.++ +++++|.|++++|.+|+++. ++.++++.+ +|.|.||+++||+.|
T Consensus 223 ~-I~i~~-~~~v~~i~~~~~~~v-~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~ts~~ 299 (460)
T PRK06292 223 E-FKIKL-GAKVTSVEKSGDEKV-EELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQTSVP 299 (460)
T ss_pred c-cEEEc-CCEEEEEEEcCCceE-EEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcccCCC
Confidence 9 99999 999999975432122 2333333 57999999999999999984 678888876 566999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCCcC-
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~- 413 (489)
+|||+|||+..+. ....|..+|+.+|.||++.... .+..+|+ ..|..+. +..+|.+..
T Consensus 300 ~IyA~GD~~~~~~----------~~~~A~~qg~~aa~~i~~~~~~~~~~~~~p~---~~~~~~~------~a~vG~te~~ 360 (460)
T PRK06292 300 GIYAAGDVNGKPP----------LLHEAADEGRIAAENAAGDVAGGVRYHPIPS---VVFTDPQ------IASVGLTEEE 360 (460)
T ss_pred CEEEEEecCCCcc----------chhHHHHHHHHHHHHhcCCCCCCcCCCCCCe---EEECCCc------cEEeECCHHH
Confidence 9999999997432 3456999999999999863222 2334553 2232111 334444321
Q ss_pred ------cE--EEE--c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhhhcCCC
Q 011267 414 ------ET--IEI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAKLQQAS 470 (489)
Q Consensus 414 ------~~--~~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~ 470 (489)
+. ... . +....+.++.++ +++|+|++++..++.++... ..+|.++.+++ ....+.||
T Consensus 361 a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~klv~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~t~~~l~~~~~~hP 440 (460)
T PRK06292 361 LKAAGIDYVVGEVPFEAQGRARVMGKNDGFVKVYADKKTGRLLGAHIIGPDAEHLIHLLAWAMQQGLTVEDLLRMPFYHP 440 (460)
T ss_pred HHhcCCCeEEEEEecccchHHHhcCCCCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCccCCC
Confidence 00 000 0 012235666554 48999999877777776555 55678888886 34457899
Q ss_pred cHHHHHHHHHccCCc
Q 011267 471 SVEEALEIARAALPV 485 (489)
Q Consensus 471 ~~~e~~~~~~~~~~~ 485 (489)
|+.|++..+++++..
T Consensus 441 t~~e~~~~~~~~~~~ 455 (460)
T PRK06292 441 TLSEGLRTALRDLFS 455 (460)
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999887654
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=319.70 Aligned_cols=401 Identities=18% Similarity=0.274 Sum_probs=266.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC------CCCCC---CCCCC-ccccCCC-----CCC---CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE------AYAPY---ERPAL-TKGYLFP-----LDK---KPARL 111 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~------~~~~y---~~~~l-~~~~~~~-----~~~---~~~~~ 111 (489)
..+|++|||||+||++||.++++.|. +|+|||+. ..... ++.-. ++.++.. ... ....+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~---~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGL---KVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCC---eEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 46899999999999999999999986 79999971 11110 00000 1111000 000 00000
Q ss_pred C--C----CccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeC--CCCEEEeC--CCeEEeeCcEEecCCCCCC
Q 011267 112 P--G----FHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDI--EKQTLITN--SGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 112 ~--~----~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~--~~~~v~~~--~g~~i~yd~lvlATG~~~~ 175 (489)
. . +..... .........+++..+++++.+ ++..++. +.++|.+. ++.++.||+||||||+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~ 158 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKG-RGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR 158 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC
Confidence 0 0 000000 000001123345578998875 5666663 34667664 3467999999999999986
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.+|..+ .++...+. .+.+......+++++|||+|.+|+|+|..|.++|.+|+++++.+++++. +++++.+.+
T Consensus 159 ~~p~~~---~~~~~~~~----~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~-~d~~~~~~~ 230 (475)
T PRK06327 159 HLPGVP---FDNKIILD----NTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAA-ADEQVAKEA 230 (475)
T ss_pred CCCCCC---CCCceEEC----cHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCc-CCHHHHHHH
Confidence 444322 22222221 2222222235789999999999999999999999999999999998884 789999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC--C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED--G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD 328 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd 328 (489)
.+.+++.||++++ +++|++++.++ +.+ .+.+.+ | +++++|.+++++|.+|++++ ++.++++.+ +|++.||
T Consensus 231 ~~~l~~~gi~i~~-~~~v~~i~~~~-~~v-~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd 307 (475)
T PRK06327 231 AKAFTKQGLDIHL-GVKIGEIKTGG-KGV-SVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVD 307 (475)
T ss_pred HHHHHHcCcEEEe-CcEEEEEEEcC-CEE-EEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeEC
Confidence 9999999999999 99999998543 333 355443 3 46999999999999999984 577888875 5679999
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeee
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQF 407 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~ 407 (489)
+++||+.|+|||+|||+..+. ....|..+|..+|.+|++... ..|..+|+.. |..+. +..
T Consensus 308 ~~~~Ts~~~VyA~GD~~~~~~----------~~~~A~~~G~~aa~~i~g~~~~~~~~~~p~~~---~~~pe------~a~ 368 (475)
T PRK06327 308 DHCRTNVPNVYAIGDVVRGPM----------LAHKAEEEGVAVAERIAGQKGHIDYNTIPWVI---YTSPE------IAW 368 (475)
T ss_pred CCCccCCCCEEEEEeccCCcc----------hHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEE---eCCcc------eEE
Confidence 999999999999999997432 345689999999999986332 2344455432 22111 333
Q ss_pred ecCCcCc-------E--EE-----------EccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h
Q 011267 408 FGDNVGE-------T--IE-----------IGNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K 463 (489)
Q Consensus 408 ~G~~~~~-------~--~~-----------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~ 463 (489)
+|....+ . .. .+. ...+.++.++ +++|+|++++..++.++... ..+|.++.+++ .
T Consensus 369 vGlte~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~klv~d~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l 447 (475)
T PRK06327 369 VGKTEQQLKAEGVEYKAGKFPFMANGRALAMGE-PDGFVKIIADAKTDEILGVHVIGPNASELIAEAVVAMEFKASSEDI 447 (475)
T ss_pred EeCCHHHHHHcCCCEEEEEEcccccchhhhcCC-CCeEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 4433210 0 00 111 1235666553 59999999877777776655 45678888886 3
Q ss_pred -hhhcCCCcHHHHHHHHHccCCc
Q 011267 464 -AKLQQASSVEEALEIARAALPV 485 (489)
Q Consensus 464 -~~~~~~~~~~e~~~~~~~~~~~ 485 (489)
..++.|||+.|.++.|++.+..
T Consensus 448 ~~~~~~hPt~~e~~~~~~~~~~~ 470 (475)
T PRK06327 448 ARICHAHPTLSEVWHEAALAVDK 470 (475)
T ss_pred hcCCcCCCChHHHHHHHHHHhcc
Confidence 3357899999999999876543
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-37 Score=317.92 Aligned_cols=393 Identities=18% Similarity=0.199 Sum_probs=254.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC----C----CCCC---C-CCCccccCC---------------C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA----Y----APYE---R-PALTKGYLF---------------P 103 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~----~----~~y~---~-~~l~~~~~~---------------~ 103 (489)
++||+||||||||++||..++++|. +|+|||+++ . +... + +--+|-++. .
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~---~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g 81 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGK---KVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYG 81 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCC
Confidence 6899999999999999999999986 799999632 1 1110 0 000110000 0
Q ss_pred CC-CCCCCCCCCccccCC---CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC---CeEEeeCcEEecCCCCCCC
Q 011267 104 LD-KKPARLPGFHTCVGS---GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS---GKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 104 ~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~---g~~i~yd~lvlATG~~~~~ 176 (489)
.. ....++..+...... .........++..+++++.+ ++... +.++|.+.+ +..+.||+||||||+.|..
T Consensus 82 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g-~a~~~--~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~ 158 (499)
T PTZ00052 82 WKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYING-LAKLK--DEHTVSYGDNSQEETITAKYILIATGGRPSI 158 (499)
T ss_pred CCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEE-EEEEc--cCCEEEEeeCCCceEEECCEEEEecCCCCCC
Confidence 00 000000000000000 00000111223357777765 44333 345665532 3579999999999999874
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~ 256 (489)
++.++|... ...+ .+.+......+++++|||+|++|+|+|..|+++|.+|+++++. .+++ .+++++++.+.
T Consensus 159 p~~i~G~~~----~~~~---~~~~~~~~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~-~~d~~~~~~l~ 229 (499)
T PTZ00052 159 PEDVPGAKE----YSIT---SDDIFSLSKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-IPLR-GFDRQCSEKVV 229 (499)
T ss_pred CCCCCCccc----eeec---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-cccc-cCCHHHHHHHH
Confidence 323444321 1112 2333333345789999999999999999999999999999874 6665 58999999999
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh--hhcCCeec-CCcEEeCCCCCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSS-VGGIQVDGQFRT 333 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~--~~~gl~~~-~g~i~vd~~~~t 333 (489)
+.|++.||++++ ++.++++...+ +. ..+.+.+|+++++|.|++++|++||++++ +.++++.+ +|.+.+++. +|
T Consensus 230 ~~l~~~GV~i~~-~~~v~~v~~~~-~~-~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~-~T 305 (499)
T PTZ00052 230 EYMKEQGTLFLE-GVVPINIEKMD-DK-IKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND-CT 305 (499)
T ss_pred HHHHHcCCEEEc-CCeEEEEEEcC-Ce-EEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-cC
Confidence 999999999999 99999997543 33 35777888899999999999999999875 67888886 456677766 99
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCC
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 411 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~ 411 (489)
+.|+|||+|||+.... ..+..|..+|+.+|.||++.... .+..+|+. .|..+- +..+|..
T Consensus 306 s~p~IyAiGDv~~~~~---------~l~~~A~~~g~~aa~ni~g~~~~~~~~~~~p~~---ift~p~------ia~vGlt 367 (499)
T PTZ00052 306 NIPNIFAVGDVVEGRP---------ELTPVAIKAGILLARRLFKQSNEFIDYTFIPTT---IFTPIE------YGACGYS 367 (499)
T ss_pred CCCCEEEEEEecCCCc---------ccHHHHHHHHHHHHHHHhCCCCCcCccccCCeE---EecCCc------ceeecCC
Confidence 9999999999996321 24567999999999999864322 33444543 232211 2223321
Q ss_pred cC---------cE-EE-----------------E----cc-----CCCcEEEEEE-E--CCEEEEEEeccCCHHHhHHHH
Q 011267 412 VG---------ET-IE-----------------I----GN-----FDPKIATFWI-D--SGKLKGVLVESGSPEEFQLLP 452 (489)
Q Consensus 412 ~~---------~~-~~-----------------~----~~-----~~~~~~~~~~-~--~~~~~g~~~~~~~~~~~~~~~ 452 (489)
.. .. +. . +. ....|.++.+ + +++|+|++++..++.++...-
T Consensus 368 e~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~IlG~~ivg~~A~elI~~~ 447 (499)
T PTZ00052 368 SEAAIAKYGEDDIEEYLQEFNTLEIAAVHREKHERARKDEYDFDVSSNCLAKLVCVKSEDNKVVGFHFVGPNAGEITQGF 447 (499)
T ss_pred HHHHHHhcCCCCEEEEEeecccchhhccccccccccccccccccccCCceEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence 10 00 00 0 00 0133556544 3 599999998888888877665
Q ss_pred -HHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 453 -TLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 453 -~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
.++.++.+++ . ..++.|||+.|++..+.
T Consensus 448 ~~ai~~~~t~~~l~~~~~~hPt~sE~~~~~~ 478 (499)
T PTZ00052 448 SLALKLGAKKSDFDSMIGIHPTDAEVFMNLS 478 (499)
T ss_pred HHHHHCCCCHHHHhcccccCCCCchhhEEEE
Confidence 4568888875 3 44578999999886553
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=343.04 Aligned_cols=333 Identities=18% Similarity=0.169 Sum_probs=240.1
Q ss_pred cccccceeeeeecceec--CCCCCceeeecccccccccccccccc---------------cc-CCCCCCcEEEEcCchHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIRHSSAKNFQRRGFVVAY---------------SS-FANENREFVIVGGGNAA 63 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~~~~~~vvIIGgG~AG 63 (489)
...+||||++|||+|+. +|+++|++...++++..+.|+..++. .+ ...+.++|+||||||||
T Consensus 239 i~~~np~p~~~GrVCp~~~~CE~~C~~~~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAG 318 (944)
T PRK12779 239 IESCNPLPNVTGRVCPQELQCQGVCTHTKRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSG 318 (944)
T ss_pred HHHhCChhHHhcCcCCCccCHHHhccCCCcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHH
Confidence 45789999999999999 79999999888888888888776641 11 12357899999999999
Q ss_pred HHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcE
Q 011267 64 GYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV 143 (489)
Q Consensus 64 l~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V 143 (489)
|+||..|++.|+ +|||+|+++...- ++.- .-...+++. ....+..+.+++.|++++.+..+
T Consensus 319 LsaA~~Lar~G~---~VtVfE~~~~~GG--------~l~y-GIP~~rlp~-------~vi~~~i~~l~~~Gv~f~~n~~v 379 (944)
T PRK12779 319 LINAYLLAVEGF---PVTVFEAFHDLGG--------VLRY-GIPEFRLPN-------QLIDDVVEKIKLLGGRFVKNFVV 379 (944)
T ss_pred HHHHHHHHHCCC---eEEEEeeCCCCCc--------eEEc-cCCCCcChH-------HHHHHHHHHHHhhcCeEEEeEEe
Confidence 999999999988 6999998764321 1110 000111110 00122345677789999987543
Q ss_pred EEEeCCCCEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHHHHHh----------hcCCCcEEE
Q 011267 144 TSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALISS----------LEKAKKVVV 212 (489)
Q Consensus 144 ~~id~~~~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~----------~~~~~~vvV 212 (489)
++.+++++.....||+|+||||+. |+ .+.++|.+.+|+++..++.+....... ...+++|+|
T Consensus 380 ------G~dit~~~l~~~~yDAV~LAtGA~~pr-~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvV 452 (944)
T PRK12779 380 ------GKTATLEDLKAAGFWKIFVGTGAGLPT-FMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFV 452 (944)
T ss_pred ------ccEEeHHHhccccCCEEEEeCCCCCCC-cCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEE
Confidence 355667666666899999999995 55 456788888998877655544332211 124789999
Q ss_pred ECCCHHHHHHHHHHHhCCCcEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcEEEEEe-
Q 011267 213 VGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRVAAVKL- 289 (489)
Q Consensus 213 iG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~- 289 (489)
||||.+|+++|..+.++|.+|+++.+++. .++ .....+.+ ..+.||++++ +..++++..+++ +++.++.+
T Consensus 453 IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mp-----a~~~e~~~-a~eeGV~~~~-~~~p~~i~~d~~~~~V~~v~~~ 525 (944)
T PRK12779 453 IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMP-----ARVEELHH-ALEEGINLAV-LRAPREFIGDDHTHFVTHALLD 525 (944)
T ss_pred ECCCHHHHHHHHHHHHcCCEEEEEEecCccccc-----ccHHHHHH-HHHCCCEEEe-CcceEEEEecCCCCEEEEEEEE
Confidence 99999999999999999999999988753 222 22233333 3467999999 999999975432 35544432
Q ss_pred --------C--------CC--cEEEcCEEEEccCCCCCCchhh-hcCCeec-CCcEEeCC-CCCCCCCCeEEeccccccC
Q 011267 290 --------E--------DG--STIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 290 --------~--------~g--~~i~aD~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~ 348 (489)
. +| .+++||.||+|+|..|+..+.. ..+++.+ +|.|.||+ +++|+.|+|||+|||+..+
T Consensus 526 ~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~~~G~ 605 (944)
T PRK12779 526 VNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAARGG 605 (944)
T ss_pred EEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcCCCCh
Confidence 1 12 3699999999999999865432 3467765 56799997 5899999999999999753
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
. .+..|+.+|+.||.+|..
T Consensus 606 ~----------~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 606 S----------TAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred H----------HHHHHHHHHHHHHHHHHH
Confidence 2 345588899999988864
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=308.43 Aligned_cols=293 Identities=22% Similarity=0.323 Sum_probs=228.5
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|||||||+||+.+|.+|+++..++.+|+|||++++++|.. .++. ++.. ......+ .....+++++
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~-~~~~-~~~g-~~~~~~~-----------~~~~~~~~~~ 66 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSG-MLPG-MIAG-HYSLDEI-----------RIDLRRLARQ 66 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccc-hhhH-HHhe-eCCHHHh-----------cccHHHHHHh
Confidence 59999999999999999976533467999999999988873 2321 2211 1111111 1234567778
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHH----HHHhh---c
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISSL---E 205 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~----~~~~~---~ 205 (489)
.+++++.+ +|+.+|+++++|.+.+|+++.||+||||||+.+. .|.++|. .++++.+++.+++.. +.+.. .
T Consensus 67 ~gv~~~~~-~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~-~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (364)
T TIGR03169 67 AGARFVIA-EATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTP-LSGVEGA-ADLAVPVKPIENFLARWEALLESADAPP 143 (364)
T ss_pred cCCEEEEE-EEEEEecccCEEEECCCCcccccEEEEccCCCCC-CCCCCcc-cccccccCCHHHHHHHHHHHHHHHhcCC
Confidence 89999885 8999999999999999999999999999999987 4555663 455666777766655 33322 1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh----CC--CcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVG----WK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~----~g--~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
..++++|||+|++|+|+|..|.+ .| .+|+++ ..+.+++. +++.+...+.+.+++.||++++ ++.++++..
T Consensus 144 ~~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~-~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~- 219 (364)
T TIGR03169 144 GTKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPG-FPAKVRRLVLRLLARRGIEVHE-GAPVTRGPD- 219 (364)
T ss_pred CCceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCccccc-CCHHHHHHHHHHHHHCCCEEEe-CCeeEEEcC-
Confidence 45799999999999999999975 34 479999 66677764 7888999999999999999999 999999862
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCC-CCCCeEEeccccccCCccCCcccc
Q 011267 280 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTAR 357 (489)
Q Consensus 280 ~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~ 357 (489)
+ .+.+.+|+++++|.+|+|+|.+|+ .++...++..+ +|++.||+++|| ++|||||+|||+..+....
T Consensus 220 -~----~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~----- 288 (364)
T TIGR03169 220 -G----ALILADGRTLPADAILWATGARAP-PWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPR----- 288 (364)
T ss_pred -C----eEEeCCCCEEecCEEEEccCCChh-hHHHHcCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCC-----
Confidence 2 467788999999999999999998 56777788765 578999999998 9999999999998654221
Q ss_pred cccHHHHHHHHHHHHHHHhc
Q 011267 358 VEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 358 ~~~~~~A~~~g~~~a~~l~~ 377 (489)
......|..||+.+|+||..
T Consensus 289 ~~~~~~A~~~g~~~a~ni~~ 308 (364)
T TIGR03169 289 PKAGVYAVRQAPILAANLRA 308 (364)
T ss_pred CCchHHHHHhHHHHHHHHHH
Confidence 22445689999999999864
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=322.98 Aligned_cols=332 Identities=23% Similarity=0.247 Sum_probs=230.7
Q ss_pred cccccceeeeeecceecC--CCCCceeee--cccccccccccccccc--------ccCCCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
...+||||..|||+|+.+ |+..|.+.. .++++....++..++. .+.....++|+|||||+||+++|..
T Consensus 79 ~~~~~p~~~~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~ 158 (457)
T PRK11749 79 ILETNPLPAVCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHR 158 (457)
T ss_pred HHHhCCchhhhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHH
Confidence 357899999999999998 999999865 4556666665544431 2223456899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++...-. +. +-.+....+.. ......+++++.+++++.++.+.
T Consensus 159 l~~~g~---~V~lie~~~~~gG~---l~--~gip~~~~~~~-----------~~~~~~~~l~~~gv~~~~~~~v~----- 214 (457)
T PRK11749 159 LARKGY---DVTIFEARDKAGGL---LR--YGIPEFRLPKD-----------IVDREVERLLKLGVEIRTNTEVG----- 214 (457)
T ss_pred HHhCCC---eEEEEccCCCCCcE---ee--ccCCCccCCHH-----------HHHHHHHHHHHcCCEEEeCCEEC-----
Confidence 999986 79999988653210 00 00010000000 01223456778899999876541
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHH---HhhcCCCcEEEECCCHHHHHHHHHH
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI---SSLEKAKKVVVVGGGYIGMEVAAAA 226 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~---~~~~~~~~vvViG~G~~g~e~A~~l 226 (489)
+.+.+.+.. +.||+||+|||+.....+.++|.+.++++...++....... ..+..+++++|||+|.+|+|+|..+
T Consensus 215 -~~v~~~~~~-~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l 292 (457)
T PRK11749 215 -RDITLDELR-AGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTA 292 (457)
T ss_pred -CccCHHHHH-hhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHH
Confidence 223333333 68999999999863223455666666766543222221110 1123579999999999999999999
Q ss_pred HhCCC-cEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--------------
Q 011267 227 VGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-------------- 290 (489)
Q Consensus 227 ~~~g~-~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-------------- 290 (489)
.+.|. +|+++++.+. .++. . ....+.+++.||++++ ++.++++..++ +.+.+|++.
T Consensus 293 ~~~G~~~Vtlv~~~~~~~~~~--~----~~~~~~~~~~GV~i~~-~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~ 364 (457)
T PRK11749 293 KRLGAESVTIVYRRGREEMPA--S----EEEVEHAKEEGVEFEW-LAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRR 364 (457)
T ss_pred HHcCCCeEEEeeecCcccCCC--C----HHHHHHHHHCCCEEEe-cCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcc
Confidence 99998 8999998754 2321 1 1234567889999999 99999997543 332334331
Q ss_pred -----CCcEEEcCEEEEccCCCCCCchhh-hcCCeec-CCcEEeCC-CCCCCCCCeEEeccccccCCccCCcccccccHH
Q 011267 291 -----DGSTIDADTIVIGIGAKPTVSPFE-RVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 362 (489)
Q Consensus 291 -----~g~~i~aD~vi~a~G~~p~~~~~~-~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 362 (489)
+++++++|.||+++|.+|+..++. ..++..+ +|++.||+ +++|+.|+|||+|||+..+ ..+.
T Consensus 365 ~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~~----------~~~~ 434 (457)
T PRK11749 365 VPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTGA----------ATVV 434 (457)
T ss_pred cCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCCc----------hHHH
Confidence 234799999999999999977764 4567665 57899998 8999999999999999532 1456
Q ss_pred HHHHHHHHHHHHHhc
Q 011267 363 HARQSAQHCIKALLS 377 (489)
Q Consensus 363 ~A~~~g~~~a~~l~~ 377 (489)
.|+.+|+.+|.+|..
T Consensus 435 ~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 435 WAVGDGKDAAEAIHE 449 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 789999999988864
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-38 Score=338.45 Aligned_cols=333 Identities=21% Similarity=0.250 Sum_probs=241.0
Q ss_pred cccccceeeeeecceec--CCCCCceeee---cccccccccccccccc---------ccCCCCCCcEEEEcCchHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SSFANENREFVIVGGGNAAGYAA 67 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~~~vvIIGgG~AGl~aA 67 (489)
...+||||.+|||+|+. +|.++|.+.. .++++....|+..+.. .+.....++|+||||||||++||
T Consensus 368 ~~~~~p~p~~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA 447 (752)
T PRK12778 368 LKETSALPAVCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFA 447 (752)
T ss_pred HHhhCCchhHhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHH
Confidence 45789999999999997 8999999976 3577777877776531 11134578999999999999999
Q ss_pred HHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEe
Q 011267 68 RTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSID 147 (489)
Q Consensus 68 ~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id 147 (489)
..|++.|+ +|+|+|+++...-. +..+ .+ ..+++. ....+..+++.+.+++++.++.+
T Consensus 448 ~~l~~~G~---~V~v~e~~~~~GG~---l~~g--ip----~~rlp~-------~~~~~~~~~l~~~gv~~~~~~~v---- 504 (752)
T PRK12778 448 GDLAKRGY---DVTVFEALHEIGGV---LKYG--IP----EFRLPK-------KIVDVEIENLKKLGVKFETDVIV---- 504 (752)
T ss_pred HHHHHCCC---eEEEEecCCCCCCe---eeec--CC----CCCCCH-------HHHHHHHHHHHHCCCEEECCCEE----
Confidence 99999987 79999986543210 1000 01 011110 00122345677889999987543
Q ss_pred CCCCEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHHHHH--------hhcCCCcEEEECCCHH
Q 011267 148 IEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS--------SLEKAKKVVVVGGGYI 218 (489)
Q Consensus 148 ~~~~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~~~~--------~~~~~~~vvViG~G~~ 218 (489)
.+.+++++.....||+||||||+. |+ .+.++|.+.+++++..++.....+.. ....+++|+|||||++
T Consensus 505 --~~~v~~~~l~~~~ydavvlAtGa~~~~-~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 581 (752)
T PRK12778 505 --GKTITIEELEEEGFKGIFIASGAGLPN-FMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNT 581 (752)
T ss_pred --CCcCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHH
Confidence 234445554456799999999984 65 45567877888877655444332221 1235689999999999
Q ss_pred HHHHHHHHHhCCCc-EEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------
Q 011267 219 GMEVAAAAVGWKLD-TTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------ 290 (489)
Q Consensus 219 g~e~A~~l~~~g~~-V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------ 290 (489)
|+|+|..+.++|.+ |+++++++. .++. ... .+ +.+++.||++++ ++.++++..++++++.+|++.
T Consensus 582 a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~----~~~-e~-~~~~~~GV~i~~-~~~~~~i~~~~~g~v~~v~~~~~~~~~ 654 (752)
T PRK12778 582 AMDSARTAKRLGAERVTIVYRRSEEEMPA----RLE-EV-KHAKEEGIEFLT-LHNPIEYLADEKGWVKQVVLQKMELGE 654 (752)
T ss_pred HHHHHHHHHHcCCCeEEEeeecCcccCCC----CHH-HH-HHHHHcCCEEEe-cCcceEEEECCCCEEEEEEEEEEEecC
Confidence 99999999999997 999998754 2221 111 12 346788999999 999999976556777666552
Q ss_pred ---CC-----------cEEEcCEEEEccCCCCCCchhhhc-CCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 291 ---DG-----------STIDADTIVIGIGAKPTVSPFERV-GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 291 ---~g-----------~~i~aD~vi~a~G~~p~~~~~~~~-gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
+| ++++||.||+|+|..|+..++... +++.+ +|.|.||++++|+.|+|||+|||+..+.
T Consensus 655 ~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~Ts~~gVfA~GD~~~g~~----- 729 (752)
T PRK12778 655 PDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQSSIPGIYAGGDIVRGGA----- 729 (752)
T ss_pred cCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCCCCCCCCEEEeCCccCCcH-----
Confidence 22 259999999999999998776654 77775 4679999999999999999999997432
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 730 -----~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 730 -----TVILAMGDGKRAAAAIDE 747 (752)
T ss_pred -----HHHHHHHHHHHHHHHHHH
Confidence 345688999999988853
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=334.67 Aligned_cols=327 Identities=20% Similarity=0.222 Sum_probs=228.1
Q ss_pred cccccceeeeeecceecCCCCCceeee--cccccccccccccccc------c---cC-CCCCCcEEEEcCchHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SF-ANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~-~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
+..+||||+.|||+|+.+|++.|+|.. .++++....|+..+.. . +. ..+.++|+||||||||++||+.
T Consensus 476 i~~~nPlp~icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~ 555 (1012)
T TIGR03315 476 IYDKNPLPAITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYF 555 (1012)
T ss_pred HHHhCChhhHhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHH
Confidence 457899999999999999999999987 7888888888877631 1 11 2346899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+|+|+++..... . . +..+.. +++. ....+..+++.+.|++++++...
T Consensus 556 LAr~G~---~VTV~Ek~~~lGG~-l--~--~~IP~~----rlp~-------e~l~~~ie~l~~~GVe~~~g~~~------ 610 (1012)
T TIGR03315 556 LARAGH---PVTVFEKKEKPGGV-V--K--NIIPEF----RISA-------ESIQKDIELVKFHGVEFKYGCSP------ 610 (1012)
T ss_pred HHHCCC---eEEEEecccccCce-e--e--eccccc----CCCH-------HHHHHHHHHHHhcCcEEEEeccc------
Confidence 999987 69999998654211 0 0 011111 1110 00122345667789999887321
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHH---hhcCCCcEEEECCCHHHHHHHHHH
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS---SLEKAKKVVVVGGGYIGMEVAAAA 226 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~---~~~~~~~vvViG~G~~g~e~A~~l 226 (489)
.+.+.+.....||+|+||||+.+...+.++|.. +++. ...+....+.. ....+++|+|||||.+|+|+|..+
T Consensus 611 --d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~--~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a 685 (1012)
T TIGR03315 611 --DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAA 685 (1012)
T ss_pred --ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-ccee--eHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHH
Confidence 122233344679999999999854333444432 2332 22222222221 134689999999999999999998
Q ss_pred HhC-CC-cEEEEccCC-cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE--------------Ee
Q 011267 227 VGW-KL-DTTIIFPEN-HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV--------------KL 289 (489)
Q Consensus 227 ~~~-g~-~V~lv~~~~-~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v--------------~~ 289 (489)
.+. |. +|++++++. ..++. .. +.+.+.+ +.||++++ +..+.++. + +++... ..
T Consensus 686 ~Rl~Ga~kVtLVyRr~~~~Mpa-~~----eEl~~al-eeGVe~~~-~~~p~~I~-~--g~l~v~~~~l~~~d~sGr~~~v 755 (1012)
T TIGR03315 686 LRVPGVEKVTVVYRRTKRYMPA-SR----EELEEAL-EDGVDFKE-LLSPESFE-D--GTLTCEVMKLGEPDASGRRRPV 755 (1012)
T ss_pred HHhCCCceEEEEEccCcccccc-CH----HHHHHHH-HcCCEEEe-CCceEEEE-C--CeEEEEEEEeecccCCCceeee
Confidence 876 75 799999876 33432 22 2334433 57999999 88888886 1 222111 11
Q ss_pred CCC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCccCCcccccccHHHHH
Q 011267 290 EDG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 365 (489)
Q Consensus 290 ~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~ 365 (489)
.+| .+++||.||+|+|..|++++++.+|++.+ +|.+.||++ ++|+.|+|||+|||+..+. .+..|+
T Consensus 756 ~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~----------tVv~AI 825 (1012)
T TIGR03315 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPA----------TIVEAI 825 (1012)
T ss_pred cCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCcc----------HHHHHH
Confidence 123 36999999999999999999999998875 467999986 8999999999999986543 456799
Q ss_pred HHHHHHHHHHhcC
Q 011267 366 QSAQHCIKALLSA 378 (489)
Q Consensus 366 ~~g~~~a~~l~~~ 378 (489)
.+|+.||.+|++.
T Consensus 826 aqGr~AA~nIl~~ 838 (1012)
T TIGR03315 826 ADGRKAANAILSR 838 (1012)
T ss_pred HHHHHHHHHHhcc
Confidence 9999999999864
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=320.37 Aligned_cols=337 Identities=20% Similarity=0.216 Sum_probs=234.3
Q ss_pred ccccceeeeeecceecCCCCCceeee--cccccccccccccccc------c---cCCCCCCcEEEEcCchHHHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
..+||||..|||+|+.+|+++|+|.. .++++....|+..+.. . +.....++|+|||||+||++||..|+
T Consensus 84 ~~~~p~~~~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~ 163 (471)
T PRK12810 84 HQTNNFPEFTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLA 163 (471)
T ss_pred HHhCChhHHhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHH
Confidence 46899999999999999999999987 7788888888777641 1 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC
Q 011267 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (489)
Q Consensus 72 ~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~ 151 (489)
+.|+ +|+|+|+++..... +..+ .+....+.. ......+++.+.|++++.++.+. .+...
T Consensus 164 ~~G~---~V~vie~~~~~GG~---l~~g--ip~~~~~~~-----------~~~~~~~~~~~~gv~~~~~~~v~-~~~~~- 222 (471)
T PRK12810 164 RAGH---KVTVFERADRIGGL---LRYG--IPDFKLEKE-----------VIDRRIELMEAEGIEFRTNVEVG-KDITA- 222 (471)
T ss_pred hCCC---cEEEEecCCCCCce---eeec--CCcccCCHH-----------HHHHHHHHHHhCCcEEEeCCEEC-CcCCH-
Confidence 9987 69999998754210 0000 000000000 01223456788899999986542 22111
Q ss_pred EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHH--HHHH------hhcCCCcEEEECCCHHHHHHH
Q 011267 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADAD--ALIS------SLEKAKKVVVVGGGYIGMEVA 223 (489)
Q Consensus 152 ~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~--~~~~------~~~~~~~vvViG~G~~g~e~A 223 (489)
+.....||+|++|||+.+...+.++|.+.+++++..++.... .+.. ....+++++|||+|++|+|+|
T Consensus 223 -----~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 223 -----EELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred -----HHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 111257999999999973334556777778877643222111 1111 123578999999999999999
Q ss_pred HHHHhCCC-cEEEEccCCcchhhhhCH----HH-HHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----CC
Q 011267 224 AAAVGWKL-DTTIIFPENHLLQRLFTP----SL-AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-----DG 292 (489)
Q Consensus 224 ~~l~~~g~-~V~lv~~~~~~l~~~~~~----~~-~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-----~g 292 (489)
..+.+.|. +|++++..+......++. .. .....+.+++.||++++ ++.++++.. +++++..|++. +|
T Consensus 298 ~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~-~~~~~~i~~-~~g~v~~V~~~~~~~~~g 375 (471)
T PRK12810 298 GTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREF-NVQTKEFEG-ENGKVTGVKVVRTELGEG 375 (471)
T ss_pred HHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEe-ccCceEEEc-cCCEEEEEEEEEEEecCC
Confidence 99888886 688766554322211010 00 11134567788999999 999999973 45677665532 22
Q ss_pred ---------cEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeC-CCCCCCCCCeEEeccccccCCccCCccccccc
Q 011267 293 ---------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 360 (489)
Q Consensus 293 ---------~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~ 360 (489)
+++++|.||+|+|.+|+. .+++.++++.+ +|.+.+| ++++|+.|+|||+|||+..+. .
T Consensus 376 ~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g~~----------~ 445 (471)
T PRK12810 376 DFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----------L 445 (471)
T ss_pred CccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEccccCCCch----------h
Confidence 479999999999999985 58888888876 5779998 799999999999999997432 3
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011267 361 VDHARQSAQHCIKALLS 377 (489)
Q Consensus 361 ~~~A~~~g~~~a~~l~~ 377 (489)
+..|..+|+.||.+|..
T Consensus 446 ~~~Av~~G~~AA~~i~~ 462 (471)
T PRK12810 446 VVWAIAEGRQAARAIDA 462 (471)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45688889988888753
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-37 Score=335.42 Aligned_cols=333 Identities=18% Similarity=0.210 Sum_probs=235.0
Q ss_pred cccccceeeeeecceec--CCCCCceeee--cccccccccccccccc-----c-c-CCCCCCcEEEEcCchHHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY-----S-S-FANENREFVIVGGGNAAGYAARTF 70 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~-~-~~~~~~~vvIIGgG~AGl~aA~~L 70 (489)
...+||||++|||+|+. +|+++|+++. .++.+..+.|+..++. . + ...+.++|+|||||||||+||..|
T Consensus 370 i~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~~~~~~~~kVaIIG~GPAGLsaA~~L 449 (1006)
T PRK12775 370 IYEASIFPSICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPPRFSKKLGKVAICGSGPAGLAAAADL 449 (1006)
T ss_pred HHHhCChHHHhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 35689999999999998 8999999987 7788888888877652 1 1 123468999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC
Q 011267 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (489)
Q Consensus 71 ~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~ 150 (489)
++.|+ +|+|+|+.+...- .+..+ .+.. +++ .+...+..+++.+.|++++.+..+ .
T Consensus 450 a~~G~---~VtV~E~~~~~GG---~l~~g--ip~~----rl~-------~e~~~~~~~~l~~~Gv~~~~~~~v-g----- 504 (1006)
T PRK12775 450 VKYGV---DVTVYEALHVVGG---VLQYG--IPSF----RLP-------RDIIDREVQRLVDIGVKIETNKVI-G----- 504 (1006)
T ss_pred HHcCC---cEEEEecCCCCcc---eeecc--CCcc----CCC-------HHHHHHHHHHHHHCCCEEEeCCcc-C-----
Confidence 99987 7999998765321 01100 0101 111 001123456778899999988543 1
Q ss_pred CEEEeCCCe-EEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHHHHH---------hhcCCCcEEEECCCHHH
Q 011267 151 QTLITNSGK-LLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADALIS---------SLEKAKKVVVVGGGYIG 219 (489)
Q Consensus 151 ~~v~~~~g~-~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~~~~---------~~~~~~~vvViG~G~~g 219 (489)
+.+++.+-. ...||+||||||+. |+ .+.++|.+.+++++..++.+..++.. ....+++|+|||||.+|
T Consensus 505 ~~~~~~~l~~~~~yDaViIATGa~~pr-~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA 583 (1006)
T PRK12775 505 KTFTVPQLMNDKGFDAVFLGVGAGAPT-FLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTA 583 (1006)
T ss_pred CccCHHHHhhccCCCEEEEecCCCCCC-CCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHH
Confidence 222222111 24699999999995 55 45678877888877655444333211 12357999999999999
Q ss_pred HHHHHHHHhCCCc-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--------
Q 011267 220 MEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-------- 290 (489)
Q Consensus 220 ~e~A~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-------- 290 (489)
+++|..+.++|.+ |+++.++...- ++... .. .+.+++.||++++ ++.++++..++++++.++.+.
T Consensus 584 ~D~A~~a~rlGa~~Vtiv~rr~~~e---m~a~~-~e-~~~a~eeGI~~~~-~~~p~~i~~~~~G~v~~v~~~~~~l~~~d 657 (1006)
T PRK12775 584 MDCLRVAKRLGAPTVRCVYRRSEAE---APARI-EE-IRHAKEEGIDFFF-LHSPVEIYVDAEGSVRGMKVEEMELGEPD 657 (1006)
T ss_pred HHHHHHHHHcCCCEEEEEeecCccc---CCCCH-HH-HHHHHhCCCEEEe-cCCcEEEEeCCCCeEEEEEEEEEEecccC
Confidence 9999999999985 78887654211 11111 11 2456788999999 999999976556777666542
Q ss_pred ---------CC--cEEEcCEEEEccCCCCCCchhhh-cCCeec-CCcEEeCC-----CCCCCCCCeEEeccccccCCccC
Q 011267 291 ---------DG--STIDADTIVIGIGAKPTVSPFER-VGLNSS-VGGIQVDG-----QFRTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 291 ---------~g--~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~i~vd~-----~~~t~~~~Iya~GD~a~~~~~~~ 352 (489)
+| .+++||.||+|+|..|++.++.. .++..+ +|.|.+|+ +++|++|+|||+||++..+.
T Consensus 658 ~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFAaGDv~~G~~--- 734 (1006)
T PRK12775 658 EKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFAGGDIVTGGA--- 734 (1006)
T ss_pred CCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEEecCcCCCcc---
Confidence 12 26999999999999999877654 367665 46789996 78999999999999997532
Q ss_pred CcccccccHHHHHHHHHHHHHHHh
Q 011267 353 DRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+.+|+.||.+|.
T Consensus 735 -------~vv~Ai~~Gr~AA~~I~ 751 (1006)
T PRK12775 735 -------TVILAMGAGRRAARSIA 751 (1006)
T ss_pred -------HHHHHHHHHHHHHHHHH
Confidence 34457778888877764
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=310.52 Aligned_cols=332 Identities=19% Similarity=0.197 Sum_probs=236.4
Q ss_pred ccccceeeeeeccee--cCCCCCceeee--ccccccccccccccccc---------cCCCCCCcEEEEcCchHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLW--CPQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
..+||||..|||+|+ .+|+++|+|.. .++++....|+..++.. +...+.++|+|||||++|++||..
T Consensus 80 ~~~np~~~~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~ 159 (467)
T TIGR01318 80 HQTNTLPEICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADI 159 (467)
T ss_pred HHhCCchHhhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHH
Confidence 568999999999999 49999999986 77888888888776511 112356799999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCC
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIE 149 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~ 149 (489)
|++.|+ +|+++|+++.... ++.. .....+++ ........+++++.|+++++++++..
T Consensus 160 l~~~G~---~V~i~e~~~~~gG--------~l~~-gip~~~~~-------~~~~~~~~~~~~~~Gv~~~~~~~v~~---- 216 (467)
T TIGR01318 160 LARAGV---QVVVFDRHPEIGG--------LLTF-GIPSFKLD-------KAVLSRRREIFTAMGIEFHLNCEVGR---- 216 (467)
T ss_pred HHHcCC---eEEEEecCCCCCc--------eeee-cCccccCC-------HHHHHHHHHHHHHCCCEEECCCEeCC----
Confidence 999987 6999998865321 1100 00000110 00012234677889999999876521
Q ss_pred CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH--HHHHHh---------hcCCCcEEEECCCHH
Q 011267 150 KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALISS---------LEKAKKVVVVGGGYI 218 (489)
Q Consensus 150 ~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~--~~~~~~---------~~~~~~vvViG~G~~ 218 (489)
.+.+.+ ....||+||+|||+.+...+.++|.+.+++++..++... ..+... ...+++++|||+|++
T Consensus 217 --~~~~~~-~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~ 293 (467)
T TIGR01318 217 --DISLDD-LLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDT 293 (467)
T ss_pred --ccCHHH-HHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHH
Confidence 122211 124799999999998754455678788888764322211 111100 124689999999999
Q ss_pred HHHHHHHHHhCCC-cEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------
Q 011267 219 GMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------ 290 (489)
Q Consensus 219 g~e~A~~l~~~g~-~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------ 290 (489)
|+++|..+.++|. +|+++++++.. ++. .+. ..+.+++.||++++ ++.++++..++++++.+|++.
T Consensus 294 a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~-~~~-----e~~~~~~~GV~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~~~ 366 (467)
T TIGR01318 294 AMDCVRTAIRLGAASVTCAYRRDEANMPG-SRR-----EVANAREEGVEFLF-NVQPVYIECDEDGRVTGVGLVRTALGE 366 (467)
T ss_pred HHHHHHHHHHcCCCeEEEEEecCcccCCC-CHH-----HHHHHHhcCCEEEe-cCCcEEEEECCCCeEEEEEEEEEEecc
Confidence 9999999999996 79999987653 332 222 22446788999999 999999975555666655441
Q ss_pred ---C-----------CcEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeC----CCCCCCCCCeEEeccccccCCc
Q 011267 291 ---D-----------GSTIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVD----GQFRTRMPGIFAIGDVAAFPLK 350 (489)
Q Consensus 291 ---~-----------g~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd----~~~~t~~~~Iya~GD~a~~~~~ 350 (489)
+ .++++||.||+++|.+|+. .+++..+++.+ +|++.|| .+++|+.|+|||+|||+..+.
T Consensus 367 ~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVfa~GD~~~~~~- 445 (467)
T TIGR01318 367 PDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD- 445 (467)
T ss_pred cCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEEEECCcCCCcc-
Confidence 1 1369999999999999984 56777888776 5679999 688999999999999987432
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 351 MYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 351 ~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.+|.+|..
T Consensus 446 ---------~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 446 ---------LVVTAVAEGRQAAQGILD 463 (467)
T ss_pred ---------HHHHHHHHHHHHHHHHHH
Confidence 345689999999998863
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=322.66 Aligned_cols=333 Identities=22% Similarity=0.259 Sum_probs=229.8
Q ss_pred cccccceeeeeecceecCCCCCceeee--ccccccccccccccc---------cccCCCCCCcEEEEcCchHHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAARTF 70 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (489)
...+||||..|||+|+.+|+..|++.. .++.+....|+..++ +.+...+.++|+|||||+||++||..|
T Consensus 133 ~~~~~p~p~~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~L 212 (652)
T PRK12814 133 IKETIPLPGILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYL 212 (652)
T ss_pred HHhhCCccceeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHH
Confidence 356899999999999999999999976 556677777776643 111233568999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC
Q 011267 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (489)
Q Consensus 71 ~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~ 150 (489)
++.|+ +|+|+|+++..... +..+ .+ ..+++. .......+.+.+.|+++++++.+ .++
T Consensus 213 a~~G~---~Vtv~e~~~~~GG~---l~~g--ip----~~~~~~-------~~~~~~~~~l~~~Gv~i~~~~~v-~~d--- 269 (652)
T PRK12814 213 LRKGH---DVTIFDANEQAGGM---MRYG--IP----RFRLPE-------SVIDADIAPLRAMGAEFRFNTVF-GRD--- 269 (652)
T ss_pred HHCCC---cEEEEecCCCCCce---eeec--CC----CCCCCH-------HHHHHHHHHHHHcCCEEEeCCcc-cCc---
Confidence 99987 69999998764211 1000 01 001110 00112245567789999987543 222
Q ss_pred CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCC
Q 011267 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (489)
Q Consensus 151 ~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g 230 (489)
+.+.+. ...||+|++|||+.+...+.++|.+.++++...++............+++++|||+|++|+|+|..+.++|
T Consensus 270 --v~~~~~-~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~G 346 (652)
T PRK12814 270 --ITLEEL-QKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLG 346 (652)
T ss_pred --cCHHHH-HhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcC
Confidence 222221 13599999999998643455677667776543222111111112346899999999999999999999999
Q ss_pred C-cEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC-cEEEEEeC---------------CC
Q 011267 231 L-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLE---------------DG 292 (489)
Q Consensus 231 ~-~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~---------------~g 292 (489)
. +|++++++++ .++. .+. .+.+. .+.||++++ ++.++++...+++ .+..+.+. +|
T Consensus 347 a~~Vtlv~r~~~~~mpa-~~~----ei~~a-~~eGV~i~~-~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g 419 (652)
T PRK12814 347 AESVTILYRRTREEMPA-NRA----EIEEA-LAEGVSLRE-LAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEG 419 (652)
T ss_pred CCeEEEeeecCcccCCC-CHH----HHHHH-HHcCCcEEe-ccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCC
Confidence 7 5999998764 3442 222 23333 357999999 9999998753322 12222221 12
Q ss_pred --cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCC-CCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 293 --STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 293 --~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
.++++|.||+++|..|++++++..|+..+ +|.+.||+ +++|+.|+|||+||++..+. .+..|..+|
T Consensus 420 ~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~----------~v~~Ai~~G 489 (652)
T PRK12814 420 SEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD----------IAINAVEQG 489 (652)
T ss_pred ceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch----------HHHHHHHHH
Confidence 25999999999999999999988888876 47799997 68999999999999986432 455688889
Q ss_pred HHHHHHHhc
Q 011267 369 QHCIKALLS 377 (489)
Q Consensus 369 ~~~a~~l~~ 377 (489)
+.||.+|..
T Consensus 490 ~~AA~~I~~ 498 (652)
T PRK12814 490 KRAAHAIDL 498 (652)
T ss_pred HHHHHHHHH
Confidence 888888753
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=319.55 Aligned_cols=333 Identities=20% Similarity=0.221 Sum_probs=235.0
Q ss_pred cccccceeeeeecceec--CCCCCceeee--cccccccccccccccc-----cc----CCCCCCcEEEEcCchHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAY-----SS----FANENREFVIVGGGNAAGYAAR 68 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~----~~~~~~~vvIIGgG~AGl~aA~ 68 (489)
...+||||++|||+|+. +|+++|+++. .++.+..+.|+..+.. .+ ...+.++|+|||||||||+||.
T Consensus 265 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~ 344 (654)
T PRK12769 265 SHQTNSLPEITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACAD 344 (654)
T ss_pred HHHhCCchhHhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHH
Confidence 45789999999999995 8999999987 7888888888877652 11 1235689999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeC
Q 011267 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (489)
Q Consensus 69 ~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~ 148 (489)
.|++.|+ +|+|+|+++..... +..+ .+. .+++ .....+..+++++.|++++.++.|.
T Consensus 345 ~L~~~G~---~V~V~E~~~~~GG~---l~~g--ip~----~~l~-------~~~~~~~~~~~~~~Gv~~~~~~~v~---- 401 (654)
T PRK12769 345 VLARNGV---AVTVYDRHPEIGGL---LTFG--IPA----FKLD-------KSLLARRREIFSAMGIEFELNCEVG---- 401 (654)
T ss_pred HHHHCCC---eEEEEecCCCCCce---eeec--CCC----ccCC-------HHHHHHHHHHHHHCCeEEECCCEeC----
Confidence 9999987 69999987653211 1000 010 1110 0001223466778899999886552
Q ss_pred CCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHH--HHHHHHHh---------hcCCCcEEEECCCH
Q 011267 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVA--DADALISS---------LEKAKKVVVVGGGY 217 (489)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~--~~~~~~~~---------~~~~~~vvViG~G~ 217 (489)
..+.+.+. ...||+|++|||+.....+.+++.+.+|++...++. ..+.+... ...+++++|||+|.
T Consensus 402 --~~i~~~~~-~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 478 (654)
T PRK12769 402 --KDISLESL-LEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGD 478 (654)
T ss_pred --CcCCHHHH-HhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcH
Confidence 11111111 137999999999875433455677778876432111 11111110 12468999999999
Q ss_pred HHHHHHHHHHhCCC-cEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----
Q 011267 218 IGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE----- 290 (489)
Q Consensus 218 ~g~e~A~~l~~~g~-~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~----- 290 (489)
+|+++|..+.++|. +|+++++++.. ++. .+ ...+.+++.||++++ ++.++++..++++++.+|++.
T Consensus 479 ~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~-~~-----~e~~~~~~~Gv~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~~ 551 (654)
T PRK12769 479 TAMDCVRTALRHGASNVTCAYRRDEANMPG-SK-----KEVKNAREEGANFEF-NVQPVALELNEQGHVCGIRFLRTRLG 551 (654)
T ss_pred HHHHHHHHHHHcCCCeEEEeEecCCCCCCC-CH-----HHHHHHHHcCCeEEe-ccCcEEEEECCCCeEEEEEEEEEEec
Confidence 99999999999987 69999887643 331 12 223457889999999 999999975556777666541
Q ss_pred ----CC-----------cEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeCC----CCCCCCCCeEEeccccccCC
Q 011267 291 ----DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 291 ----~g-----------~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~ 349 (489)
+| .++++|.||+|+|+.|++ .+++.++++.+ +|.|.||+ +++|+.|+|||+||++..+.
T Consensus 552 ~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaGD~~~g~~ 631 (654)
T PRK12769 552 EPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVRGAD 631 (654)
T ss_pred CcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcCCcCCCCc
Confidence 22 269999999999999985 57888888876 46789986 48999999999999987543
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 632 ----------~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 632 ----------LVVTAMAEGRHAAQGIID 649 (654)
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 445699999999998863
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=272.64 Aligned_cols=403 Identities=21% Similarity=0.357 Sum_probs=275.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCCCC------------------CCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLFPL------------------DKK 107 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~~~------------------~~~ 107 (489)
..+|++|||+||+|..||.+.++.|+ +...||++..+...- +--||.++... ...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGl---kTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~ 114 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGL---KTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSV 114 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcc---eeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccce
Confidence 57999999999999999999999998 478888866543110 11112111100 000
Q ss_pred CCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 108 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p~~~g 182 (489)
..+++.+..... .....-....+++++++++.+ .-.-+++..-++.-.||. .+.++++++|||+.-.++| |
T Consensus 115 ~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG-~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~~~P---G 190 (506)
T KOG1335|consen 115 SLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKG-FGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVTPFP---G 190 (506)
T ss_pred ecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEee-eEeecCCceEEEeccCCCceEEeeeeEEEEeCCccCCCC---C
Confidence 111111100000 000011123456778888876 445566665566666663 6899999999999643233 4
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
-.+++-.... +...+..-+-+++++|||+|.+|+|++.-+.++|.+||+++..+.+.+. +|.+++..+++.|++.
T Consensus 191 I~IDekkIVS----StgALsL~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~-mD~Eisk~~qr~L~kQ 265 (506)
T KOG1335|consen 191 ITIDEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV-MDGEISKAFQRVLQKQ 265 (506)
T ss_pred eEecCceEEe----cCCccchhhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccc-cCHHHHHHHHHHHHhc
Confidence 3333322221 2222233356899999999999999999999999999999999999985 9999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCC
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR 334 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~ 334 (489)
|++|.+ +++|...+...+|.+ .|.+.+ + ++++||.+++++|++|-+.- +++.|++.| ++.|.||..++|.
T Consensus 266 gikF~l-~tkv~~a~~~~dg~v-~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~f~t~ 343 (506)
T KOG1335|consen 266 GIKFKL-GTKVTSATRNGDGPV-EIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTRFQTK 343 (506)
T ss_pred CceeEe-ccEEEEeeccCCCce-EEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccccccc
Confidence 999999 999999998877754 455543 3 47999999999999999864 678888877 5779999999999
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-CCCCCcCCceeeecccccCCCcceeeeeecCCcC
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 413 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~ 413 (489)
+|+||++||+...|+- .| .|..+|-.+...|.++. ...|.-+|. ..|.++- +.++|....
T Consensus 344 vP~i~~IGDv~~gpML--------Ah--kAeeegI~~VE~i~g~~~hv~ynciP~---v~ythPE------vawVG~TEe 404 (506)
T KOG1335|consen 344 VPHIYAIGDVTLGPML--------AH--KAEEEGIAAVEGIAGGHGHVDYNCIPS---VVYTHPE------VAWVGKTEE 404 (506)
T ss_pred CCceEEecccCCcchh--------hh--hhhhhchhheeeecccCcccccCCCCc---eeecccc------eeeeccchh
Confidence 9999999999987662 23 37788888888777643 345555663 3444442 223443322
Q ss_pred cE------EEEccC-------------CCcEEEEEE--ECCEEEEEEeccCCHHHhHHHHHH-HhcCCCCCh-hh-hcCC
Q 011267 414 ET------IEIGNF-------------DPKIATFWI--DSGKLKGVLVESGSPEEFQLLPTL-ARSQPFVDK-AK-LQQA 469 (489)
Q Consensus 414 ~~------~~~~~~-------------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~ 469 (489)
+. ...|.+ ...|.++.. ++++++|++++.+++.++..-..| +..+...+. .. -+.|
T Consensus 405 qlkeegi~y~vgkfpF~aNsRaktn~d~eg~vKvl~d~~tdkiLGvHiigp~AgEli~EA~lAieyGasaeDvarvchaH 484 (506)
T KOG1335|consen 405 QLKEEGIKYKVGKFPFSANSRAKTNNDTEGFVKVLADKETDKILGVHIIGPNAGELIHEASLAIEYGASAEDVARVCHAH 484 (506)
T ss_pred hHHhcCcceEeeeccccccchhhccCCccceeEEEecCCCCcEEEEEEecCCHHHHHHHHHHHHHhCccHHHHhhccCCC
Confidence 10 111111 123555444 469999999988888887766544 566666542 22 3889
Q ss_pred CcHHHHHHHHHccCCc
Q 011267 470 SSVEEALEIARAALPV 485 (489)
Q Consensus 470 ~~~~e~~~~~~~~~~~ 485 (489)
||++|++++|.+++..
T Consensus 485 PTlSEa~kEa~~aA~~ 500 (506)
T KOG1335|consen 485 PTLSEAFKEANMAAYD 500 (506)
T ss_pred CcHHHHHHHHHHHhhc
Confidence 9999999999998765
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=304.44 Aligned_cols=336 Identities=19% Similarity=0.240 Sum_probs=230.4
Q ss_pred ccccceeeeeecceecCCCCCceeee--cccccccccccccccc------c---cCCCCCCcEEEEcCchHHHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY------S---SFANENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~------~---~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
..+||||..|||+|+.+|++.|+++. .++++....|+..+.. . +.....++|+|||||+||++||..|+
T Consensus 84 ~~~~p~p~~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~ 163 (485)
T TIGR01317 84 HATNNFPEFTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLN 163 (485)
T ss_pred HhhCCchhHHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHH
Confidence 46899999999999999999999987 6777878777765431 1 11234579999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC
Q 011267 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ 151 (489)
Q Consensus 72 ~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~ 151 (489)
+.|+ +|+|+|+++..... +..+ .+.......+ .....+++++.|++++.++.+. .+...
T Consensus 164 ~~g~---~V~v~e~~~~~gG~---l~~g--ip~~~~~~~~-----------~~~~~~~~~~~Gv~~~~~~~v~-~~~~~- 222 (485)
T TIGR01317 164 RAGH---TVTVFEREDRCGGL---LMYG--IPNMKLDKAI-----------VDRRIDLLSAEGIDFVTNTEIG-VDISA- 222 (485)
T ss_pred HcCC---eEEEEecCCCCCce---eecc--CCCccCCHHH-----------HHHHHHHHHhCCCEEECCCEeC-CccCH-
Confidence 9986 69999998753211 0000 0000000000 1223467788999999987653 22111
Q ss_pred EEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHH-HHHHHH---------HhhcCCCcEEEECCCHHHH
Q 011267 152 TLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVA-DADALI---------SSLEKAKKVVVVGGGYIGM 220 (489)
Q Consensus 152 ~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~-~~~~~~---------~~~~~~~~vvViG~G~~g~ 220 (489)
+.....||+|++|||+. |. .+.++|.+.+++++..++. +..... .....+++|+|||+|++|+
T Consensus 223 -----~~~~~~~d~VilAtGa~~~~-~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~ 296 (485)
T TIGR01317 223 -----DELKEQFDAVVLAGGATKPR-DLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGA 296 (485)
T ss_pred -----HHHHhhCCEEEEccCCCCCC-cCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHH
Confidence 11235799999999998 55 4556787788888653322 111111 1113578999999999999
Q ss_pred HHHHHHHhCCC-cEEEEccCCcchhhhhC----H------HHHHHHHHHHHhcCcEE-EEcCceEEEEEeCCCCcEEEEE
Q 011267 221 EVAAAAVGWKL-DTTIIFPENHLLQRLFT----P------SLAQRYEQLYQQNGVKF-VKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 221 e~A~~l~~~g~-~V~lv~~~~~~l~~~~~----~------~~~~~l~~~l~~~Gv~~-~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
|+|..+.++|. +|+++++.++.+..... + +......+..+..|+++ ++ ++.+++|..++++++.+++
T Consensus 297 d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~-~~~~~~i~~~~~g~v~~v~ 375 (485)
T TIGR01317 297 DCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREY-SILTKEFIGDDEGKVTALR 375 (485)
T ss_pred HHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEE-ecCcEEEEEcCCCeEEEEE
Confidence 99888887775 79999988765542111 0 11222334444457654 56 7888888754446666665
Q ss_pred e--------CCC-----------cEEEcCEEEEccCCC-CCCchhhhcCCeec-CCcEE-eCCCCCCCCCCeEEeccccc
Q 011267 289 L--------EDG-----------STIDADTIVIGIGAK-PTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 289 ~--------~~g-----------~~i~aD~vi~a~G~~-p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~Iya~GD~a~ 346 (489)
+ ++| ++++||.||+|+|.. |++.+++.+|++.+ +|.+. +|++++|+.|+|||+|||+.
T Consensus 376 ~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~~~Ts~~gVfAaGD~~~ 455 (485)
T TIGR01317 376 TVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDDYSTSIPGVFAAGDCRR 455 (485)
T ss_pred EEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCCceECCCCEEEeeccCC
Confidence 3 133 269999999999996 88889998998865 46674 46789999999999999986
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 347 FPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 347 ~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+. ....|..+|+.||.+|.
T Consensus 456 g~~----------~~~~Av~~G~~AA~~i~ 475 (485)
T TIGR01317 456 GQS----------LIVWAINEGRKAAAAVD 475 (485)
T ss_pred CcH----------HHHHHHHHHHHHHHHHH
Confidence 432 34458888888888875
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=306.70 Aligned_cols=333 Identities=17% Similarity=0.197 Sum_probs=234.2
Q ss_pred cccccceeeeeecceec--CCCCCceeee--ccccccccccccccccc---------cCCCCCCcEEEEcCchHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR--HSSAKNFQRRGFVVAYS---------SFANENREFVIVGGGNAAGYAAR 68 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~vvIIGgG~AGl~aA~ 68 (489)
...+||||++|||+|+. +|+++|++.. .++++....|+..++.. +...+.++|+|||||+||+++|.
T Consensus 248 ~~~~np~p~~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~ 327 (639)
T PRK12809 248 CHQTSSLPEICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCAD 327 (639)
T ss_pred HHHhCCcchhhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHH
Confidence 35789999999999994 8999999986 68888888888776521 11235789999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeC
Q 011267 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (489)
Q Consensus 69 ~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~ 148 (489)
.|++.|+ +|+|+|+++...- ++.- ...+.+++. .......+++++.|+++++++++.
T Consensus 328 ~L~~~G~---~Vtv~e~~~~~GG--------~l~~-gip~~~l~~-------~~~~~~~~~~~~~Gv~~~~~~~v~---- 384 (639)
T PRK12809 328 ILARAGV---QVDVFDRHPEIGG--------MLTF-GIPPFKLDK-------TVLSQRREIFTAMGIDFHLNCEIG---- 384 (639)
T ss_pred HHHHcCC---cEEEEeCCCCCCC--------eeec-cCCcccCCH-------HHHHHHHHHHHHCCeEEEcCCccC----
Confidence 9999987 6999998875321 1100 000111110 001123467788999999987652
Q ss_pred CCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH--HHHHH---------hhcCCCcEEEECCCH
Q 011267 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA--DALIS---------SLEKAKKVVVVGGGY 217 (489)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~--~~~~~---------~~~~~~~vvViG~G~ 217 (489)
..+.+.+ ....||++++|||+.+...+.+++.+.+|++...++... ..+.. ....+++++|+|+|.
T Consensus 385 --~~~~~~~-l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~ 461 (639)
T PRK12809 385 --RDITFSD-LTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGD 461 (639)
T ss_pred --CcCCHHH-HHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcH
Confidence 1122221 124799999999997644455677777787653211110 11110 012468999999999
Q ss_pred HHHHHHHHHHhCCC-cEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---C--
Q 011267 218 IGMEVAAAAVGWKL-DTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---E-- 290 (489)
Q Consensus 218 ~g~e~A~~l~~~g~-~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~-- 290 (489)
+++++|..+.++|. +|+++++++.. ++. ... .+. .+++.||++++ ++.++++..++++++..+.+ .
T Consensus 462 ~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~-~~~----e~~-~a~~eGv~~~~-~~~~~~i~~~~~g~v~~v~~~~~~~~ 534 (639)
T PRK12809 462 TTMDCLRTSIRLNAASVTCAYRRDEVSMPG-SRK----EVV-NAREEGVEFQF-NVQPQYIACDEDGRLTAVGLIRTAMG 534 (639)
T ss_pred HHHHHHHHHHHcCCCeEEEeeecCcccCCC-CHH----HHH-HHHHcCCeEEe-ccCCEEEEECCCCeEEEEEEEEEEec
Confidence 99999999999985 79999987644 332 222 222 35678999999 99999997555666665543 1
Q ss_pred ----CC-----------cEEEcCEEEEccCCCCCC-chhhhcCCeec-CCcEEeCC----CCCCCCCCeEEeccccccCC
Q 011267 291 ----DG-----------STIDADTIVIGIGAKPTV-SPFERVGLNSS-VGGIQVDG----QFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 291 ----~g-----------~~i~aD~vi~a~G~~p~~-~~~~~~gl~~~-~g~i~vd~----~~~t~~~~Iya~GD~a~~~~ 349 (489)
+| .++++|.||+|+|..|+. .+++.++++.+ +|.|.+|+ +++|+.|+|||+||++..+.
T Consensus 535 ~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~GD~~~g~~ 614 (639)
T PRK12809 535 EPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVHGAD 614 (639)
T ss_pred CcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcCCCCCCch
Confidence 12 369999999999999974 56777888876 46688886 48999999999999987532
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.||.+|..
T Consensus 615 ----------~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 615 ----------LVVTAMAAGRQAARDMLT 632 (639)
T ss_pred ----------HHHHHHHHHHHHHHHHHH
Confidence 445688999999988863
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=273.95 Aligned_cols=284 Identities=24% Similarity=0.326 Sum_probs=204.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCChhHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEWY 130 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 130 (489)
+||+|||||+||++||..|++.|. +|+|||+++... . +... .....+|++.. ..+........+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~ 67 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANL---KTLIIEGMEPGG-Q-------LTTT--TEVENYPGFPEGISGPELMEKMKEQA 67 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCc-c-------eeec--ccccccCCCCCCCChHHHHHHHHHHH
Confidence 589999999999999999999886 699999875211 0 0000 00001111110 00011112334566
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHHHHhhc
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSLE 205 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~~~~~~ 205 (489)
++++++++. .+|+.+++..+ .+.+.++.++.||+||+|||+.|. .|.++|... .++++..... ....
T Consensus 68 ~~~gv~~~~-~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~-~~~i~g~~~~~~~~~~~~~~~~------~~~~ 139 (300)
T TIGR01292 68 VKFGAEIIY-EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASAR-KLGIPGEDEFLGRGVSYCATCD------GPFF 139 (300)
T ss_pred HHcCCeEEE-EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcc-cCCCCChhhcCCccEEEeeecC------hhhc
Confidence 788999998 79999998764 566777888999999999999886 344455321 2333322111 1234
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
.+++++|||+|.+|+|+|..|.+.+.+|+++.+.+.+.. . ..+.+.+++. ||++++ ++.++++..+ +++
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~---~----~~~~~~l~~~~gv~~~~-~~~v~~i~~~--~~~ 209 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRA---E----KILLDRLRKNPNIEFLW-NSTVKEIVGD--NKV 209 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccCc---C----HHHHHHHHhCCCeEEEe-ccEEEEEEcc--CcE
Confidence 578999999999999999999999999999999875532 2 3455667777 999999 9999999843 344
Q ss_pred EEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCccccc
Q 011267 285 AAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358 (489)
Q Consensus 285 ~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~ 358 (489)
..+++. +| +++++|.+|+|+|++|+.++++.+ +..+ +|++.||++++|++|||||+|||+... .
T Consensus 210 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~-~~~~~~g~i~v~~~~~t~~~~vya~GD~~~~~---------~ 279 (300)
T TIGR01292 210 EGVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL-LELDEGGYIVTDEGMRTSVPGVFAAGDVRDKG---------Y 279 (300)
T ss_pred EEEEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh-heecCCCcEEECCCCccCCCCEEEeecccCcc---------h
Confidence 455542 23 579999999999999999888887 6554 577999999999999999999999742 1
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 011267 359 EHVDHARQSAQHCIKALL 376 (489)
Q Consensus 359 ~~~~~A~~~g~~~a~~l~ 376 (489)
..+..|+.+|+.+|.++.
T Consensus 280 ~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 280 RQAVTAAGDGCIAALSAE 297 (300)
T ss_pred hhhhhhhhhHHHHHHHHH
Confidence 256679999999999886
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=305.17 Aligned_cols=327 Identities=20% Similarity=0.218 Sum_probs=222.1
Q ss_pred ccccceeeeeecceecCCCCCceeee--cccccccccccccccc----------ccCCCCCCcEEEEcCchHHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY----------SSFANENREFVIVGGGNAAGYAARTF 70 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~----------~~~~~~~~~vvIIGgG~AGl~aA~~L 70 (489)
..+||||+.|||+|+.+|+++|+++. .++.+....|+..+.. .+...+.++|+|||+|+||+++|..|
T Consensus 223 ~~~np~~~~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L 302 (604)
T PRK13984 223 YKTNPLSMVCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFL 302 (604)
T ss_pred HhcCCccchhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHH
Confidence 35899999999999999999999986 4555555555444321 11234578999999999999999999
Q ss_pred HHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC
Q 011267 71 VEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK 150 (489)
Q Consensus 71 ~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~ 150 (489)
++.|+ +|+|+|+++..... +. +-.+....+..+ ..+..+++++.+++++.++.|.. +
T Consensus 303 ~~~G~---~v~vie~~~~~gG~---~~--~~i~~~~~~~~~-----------~~~~~~~~~~~gv~~~~~~~v~~-~--- 359 (604)
T PRK13984 303 ATMGY---EVTVYESLSKPGGV---MR--YGIPSYRLPDEA-----------LDKDIAFIEALGVKIHLNTRVGK-D--- 359 (604)
T ss_pred HHCCC---eEEEEecCCCCCce---Ee--ecCCcccCCHHH-----------HHHHHHHHHHCCcEEECCCEeCC-c---
Confidence 99987 79999988754211 00 000100001000 12234677889999999866531 1
Q ss_pred CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh-------cCCCcEEEECCCHHHHHHH
Q 011267 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-------EKAKKVVVVGGGYIGMEVA 223 (489)
Q Consensus 151 ~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~-------~~~~~vvViG~G~~g~e~A 223 (489)
+..++ ....||+||+|||+.+...+.++|.+.++++.. ......+...+ ..+++++|||||++|+|+|
T Consensus 360 --~~~~~-~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a--~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~~g~e~A 434 (604)
T PRK13984 360 --IPLEE-LREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQA--LPLLREIRDYLRGEGPKPKIPRSLVVIGGGNVAMDIA 434 (604)
T ss_pred --CCHHH-HHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeH--HHHHHHHHhhhccCCCcCCCCCcEEEECCchHHHHHH
Confidence 11111 135799999999987433455677666676543 22223232221 2368999999999999999
Q ss_pred HHHHhCCC------cEEEEccC--CcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----
Q 011267 224 AAAVGWKL------DTTIIFPE--NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE----- 290 (489)
Q Consensus 224 ~~l~~~g~------~V~lv~~~--~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~----- 290 (489)
..+.+++. +|+++... ...++ .... .+.+ +.+.||++++ +..++++.. +++++..|++.
T Consensus 435 ~~l~r~~~~~~g~~~V~v~~~~r~~~~~~----~~~~-e~~~-~~~~GV~i~~-~~~~~~i~~-~~g~v~~v~~~~~~~~ 506 (604)
T PRK13984 435 RSMARLQKMEYGEVNVKVTSLERTFEEMP----ADME-EIEE-GLEEGVVIYP-GWGPMEVVI-ENDKVKGVKFKKCVEV 506 (604)
T ss_pred HHHHhccccccCceEEEEeccccCcccCC----CCHH-HHHH-HHHcCCEEEe-CCCCEEEEc-cCCEEEEEEEEEEeec
Confidence 99998753 67776432 22222 1211 2333 3467999999 998988863 45666655542
Q ss_pred ---C-----------CcEEEcCEEEEccCCCCCCchhhh---cCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCC
Q 011267 291 ---D-----------GSTIDADTIVIGIGAKPTVSPFER---VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353 (489)
Q Consensus 291 ---~-----------g~~i~aD~vi~a~G~~p~~~~~~~---~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~ 353 (489)
+ ++++++|.||+|+|++|+++++.. .+++.++|+|.||+++||++|+|||+|||+..+.
T Consensus 507 ~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~i~vd~~~~Ts~~gVfAaGD~~~~~~---- 582 (604)
T PRK13984 507 FDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGRILTNEYGQTSIPWLFAGGDIVHGPD---- 582 (604)
T ss_pred cCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCeEEeCCCCccCCCCEEEecCcCCchH----
Confidence 1 236999999999999999888753 2355556789999999999999999999997542
Q ss_pred cccccccHHHHHHHHHHHHHHHh
Q 011267 354 RTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 354 ~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
...|..+|+.||.+|.
T Consensus 583 -------~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 583 -------IIHGVADGYWAAEGID 598 (604)
T ss_pred -------HHHHHHHHHHHHHHHH
Confidence 2347888888888875
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-34 Score=294.80 Aligned_cols=269 Identities=25% Similarity=0.372 Sum_probs=195.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~-~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...+||+||||||||++||..|++.|. +++||++... ..+....+.. + .+.+...+........
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~---~v~li~~~~GG~~~~~~~~~~-~-----------~~~~~~~~~~l~~~l~ 274 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGL---RTAMVAERIGGQVKDTVGIEN-L-----------ISVPYTTGSQLAANLE 274 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCccccCcCccc-c-----------cccCCCCHHHHHHHHH
Confidence 456899999999999999999999987 6999975311 1111111110 1 1110001111112334
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+++++++++++.+++|..++.+. ..+.+.+|..+.||++|+|||+.++. +.++|.. ..++++..... .
T Consensus 275 ~~l~~~gv~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~-~~ipG~~~~~~~~v~~~~~~~------~ 347 (515)
T TIGR03140 275 EHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRK-LGVPGEKEYIGKGVAYCPHCD------G 347 (515)
T ss_pred HHHHHhCCeEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCC-CCCCCHHHcCCCeEEEeeccC------h
Confidence 55677899999998999998765 46677788889999999999998864 4445531 23444332211 1
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSD 281 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~ 281 (489)
....+++++|||+|++|+|+|..|+..+.+|+++++.+.+.. ...+.+.+++ .||++++ ++.++++.. ++
T Consensus 348 ~~~~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~-------~~~l~~~l~~~~gV~i~~-~~~v~~i~~-~~ 418 (515)
T TIGR03140 348 PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKA-------DKVLQDKLKSLPNVDILT-SAQTTEIVG-DG 418 (515)
T ss_pred hhcCCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcCCh-------hHHHHHHHhcCCCCEEEE-CCeeEEEEc-CC
Confidence 234689999999999999999999999999999998876643 2345666766 6999999 999999974 33
Q ss_pred CcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 282 GRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 282 ~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+++..|.+.+ | ++++||.|++++|.+|++++++.. ++.+ +|+|.||+++||++|+|||+|||+..+.
T Consensus 419 ~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~~-~~~~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~ 491 (515)
T TIGR03140 419 DKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKDA-VELNRRGEIVIDERGRTSVPGIFAAGDVTTVPY 491 (515)
T ss_pred CEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhhh-cccCCCCeEEECCCCCCCCCCEEEcccccCCcc
Confidence 5666676653 2 469999999999999999998876 6664 5779999999999999999999998654
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-32 Score=276.62 Aligned_cols=324 Identities=28% Similarity=0.350 Sum_probs=264.9
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHC
Q 011267 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133 (489)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (489)
++|||+|++|+++|..|++... +.+|+++..++..+|.+++++..+.... .....+. .... +..+.
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~-~~~i~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~-~~~~~ 66 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLL-AAEITLIGREPKYSYYRCPLSLYVGGGI-ASLEDLR-----------YPPR-FNRAT 66 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCC-CCCEEEEeCCCCCCCCCCccchHHhccc-CCHHHhc-----------ccch-hHHhh
Confidence 5899999999999999999876 7899999999999999988876433321 1111111 1112 33577
Q ss_pred CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEE
Q 011267 134 GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVV 213 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvVi 213 (489)
++.+..+++|..+|+..+.+.+.+| ++.||+|++|||+++...+ +...+++++++...+.+.+.......++++|+
T Consensus 67 ~i~~~~~~~v~~id~~~~~v~~~~g-~~~yd~LvlatGa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv 142 (415)
T COG0446 67 GIDVRTGTEVTSIDPENKVVLLDDG-EIEYDYLVLATGARPRPPP---ISDWEGVVTLRLREDAEALKGGAEPPKDVVVV 142 (415)
T ss_pred CCEEeeCCEEEEecCCCCEEEECCC-cccccEEEEcCCCcccCCC---ccccCceEEECCHHHHHHHHHHHhccCeEEEE
Confidence 9999999999999999999999999 8999999999999987544 55577899999999999888776667999999
Q ss_pred CCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEE-EEeCCC
Q 011267 214 GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA-VKLEDG 292 (489)
Q Consensus 214 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~-v~~~~g 292 (489)
|+|++|+|+|..++++|++|++++..++++++.+.+.+.+.+.+.+++.||++++ +..+.+++...+..... +...++
T Consensus 143 G~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~-~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 143 GAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLL-GTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEe-CCceEEEEcccCcceeeEEEEeCC
Confidence 9999999999999999999999999999998643388999999999999999999 99999998543222111 577888
Q ss_pred cEEEcCEEEEccCCCCCCchhhhcC--CeecCCcEEeCCCCCCC-CCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 293 STIDADTIVIGIGAKPTVSPFERVG--LNSSVGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p~~~~~~~~g--l~~~~g~i~vd~~~~t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
..+++|.+++++|.+|++.++...+ .....|.+.||++++|+ .++|||+|||+..+....+......+|+.|..+++
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~~ 301 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGR 301 (415)
T ss_pred cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhhH
Confidence 8999999999999999977777775 44455679999999997 99999999999987655444455778999999999
Q ss_pred HHHHHHhcCCCCCCCcCCceeeeccccc
Q 011267 370 HCIKALLSAQTHTYDYLPYFYSRVFEYE 397 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~~~~~~~ 397 (489)
.++.++.+. .......++.|.+++++.
T Consensus 302 i~~~~~~~~-~~~~~~~~~~~~~~~~~~ 328 (415)
T COG0446 302 IAAENIAGA-LRIPGLLGTVISDVGDLC 328 (415)
T ss_pred HHHHHhccc-cccccccCceEEEEcCeE
Confidence 999999865 323355778888887753
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-33 Score=272.57 Aligned_cols=273 Identities=20% Similarity=0.283 Sum_probs=191.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (489)
.+.+||+||||||||++||..|++.|+ ++++||.....+.. .... ....+|+... ..+.....+..
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~---~~~~ie~~~~gg~~--~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 70 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTTT--------EVENWPGDPNDLTGPLLMERMH 70 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCC---CeEEEEeecCCCce--ecCc--------eECCCCCCCCCCCHHHHHHHHH
Confidence 467899999999999999999999986 58898854321110 0000 0011111100 00000012223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeC-CCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHHh
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~-~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~~ 203 (489)
+....++.+++.+ +|..++.....+.+. +...+.||+||+|||+.|+ .|.++|.+ ..++++.... ...
T Consensus 71 ~~~~~~~~~~~~~-~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~-~~~i~g~~~~~~~~v~~~~~~------~~~ 142 (321)
T PRK10262 71 EHATKFETEIIFD-HINKVDLQNRPFRLTGDSGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACATC------DGF 142 (321)
T ss_pred HHHHHCCCEEEee-EEEEEEecCCeEEEEecCCEEEECEEEECCCCCCC-CCCCCCHHHcCCCcEEEeecC------CHH
Confidence 4445567777764 677888766654332 2336899999999999986 45555532 2233333211 122
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
...+++++|||+|.+|+|+|..|++++.+|+++++.+.+. .++.+.+.+.+.+++.||++++ ++.++++..+ ++.
T Consensus 143 ~~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~---~~~~~~~~~~~~l~~~gV~i~~-~~~v~~v~~~-~~~ 217 (321)
T PRK10262 143 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNIILHT-NRTLEEVTGD-QMG 217 (321)
T ss_pred HcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC---CCHHHHHHHHhhccCCCeEEEe-CCEEEEEEcC-Ccc
Confidence 3468999999999999999999999999999999987653 3566778888999999999999 9999999743 334
Q ss_pred EEEEEeCCC------cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCC-----CCCCCCCCeEEeccccccC
Q 011267 284 VAAVKLEDG------STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 284 v~~v~~~~g------~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Iya~GD~a~~~ 348 (489)
+..|++.++ +++++|.||+++|.+|+..+++. ++..++|+|.||+ +++|++|+|||+|||+..+
T Consensus 218 ~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~-~l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~ 292 (321)
T PRK10262 218 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 292 (321)
T ss_pred EEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhc-cccccCCEEEECCCCcccccccCCCCEEECeeccCCC
Confidence 555665432 37999999999999999887664 5666667899997 7899999999999999643
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-32 Score=281.80 Aligned_cols=269 Identities=23% Similarity=0.330 Sum_probs=195.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...+||+||||||||++||.+|++.|. +++||++....... .+.+ ..+++++...+........
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~---~v~li~~~~GG~~~~~~~~------------~~~~~~~~~~~~~l~~~l~ 273 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGI---RTGIVAERFGGQVLDTMGI------------ENFISVPETEGPKLAAALE 273 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCeeeccCcc------------cccCCCCCCCHHHHHHHHH
Confidence 346899999999999999999999987 69999764111000 0000 0111111111111123345
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC--CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~--~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+.+++++++++.+++|..++.. ...+.+.+|.++.||++|+|||+.++. +.++|.. ..++++....+ .
T Consensus 274 ~~~~~~gv~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~-~~ipG~~~~~~~~v~~~~~~~------~ 346 (517)
T PRK15317 274 EHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRN-MNVPGEDEYRNKGVAYCPHCD------G 346 (517)
T ss_pred HHHHHCCCEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCC-CCCCCHHHhcCceEEEeeccC------c
Confidence 5677889999998899999886 446777888889999999999998864 4445431 23344332111 1
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSD 281 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~ 281 (489)
....+++++|||+|++|+|+|..|...+.+|+++++.+.+.. + ..+.+.+.+ .||++++ ++.++++.. ++
T Consensus 347 ~~~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gI~i~~-~~~v~~i~~-~~ 417 (517)
T PRK15317 347 PLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKA---D----QVLQDKLRSLPNVTIIT-NAQTTEVTG-DG 417 (517)
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccccc---c----HHHHHHHhcCCCcEEEE-CcEEEEEEc-CC
Confidence 124688999999999999999999999999999998876533 1 344555655 6999999 999999984 34
Q ss_pred CcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 282 GRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 282 ~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+++..+.+.+ | ++++||.+++++|.+|++++++.. +..+ +|+|.||+++||++|+|||+|||+..+.
T Consensus 418 g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~-v~~~~~g~i~vd~~l~Ts~p~IyAaGDv~~~~~ 490 (517)
T PRK15317 418 DKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT-VELNRRGEIIVDARGATSVPGVFAAGDCTTVPY 490 (517)
T ss_pred CcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh-eeeCCCCcEEECcCCCCCCCCEEECccccCCCC
Confidence 5666666643 3 369999999999999999998876 6665 4779999999999999999999998654
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=291.72 Aligned_cols=330 Identities=22% Similarity=0.249 Sum_probs=222.7
Q ss_pred cccccceeeeeecceecCCCCCceeee--cccccccccccccccc--------ccCCCCCCcEEEEcCchHHHHHHHHHH
Q 011267 2 ASVSNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVAY--------SSFANENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
...+||||..|||+|+.+|++.|+|.. .++.++...|+..++. .+.....++|+|||+||+||++|..|+
T Consensus 78 ~~~~np~~~~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~ 157 (564)
T PRK12771 78 LTKDNPFPAVMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLR 157 (564)
T ss_pred HHHhCCcchHhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH
Confidence 357899999999999999999999987 5666777777653321 112345679999999999999999999
Q ss_pred HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcE-EEEeCCC
Q 011267 72 EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPV-TSIDIEK 150 (489)
Q Consensus 72 ~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V-~~id~~~ 150 (489)
+.|+ +|+++|+++..... +.. -.+ ..+++. +......+++.+.|+++..+..+ ..+..+.
T Consensus 158 ~~G~---~V~v~e~~~~~GG~---l~~--gip----~~~~~~-------~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~~ 218 (564)
T PRK12771 158 RMGH---AVTIFEAGPKLGGM---MRY--GIP----AYRLPR-------EVLDAEIQRILDLGVEVRLGVRVGEDITLEQ 218 (564)
T ss_pred HCCC---eEEEEecCCCCCCe---eee--cCC----CccCCH-------HHHHHHHHHHHHCCCEEEeCCEECCcCCHHH
Confidence 9987 69999988764311 000 001 011110 00112234567789998887554 2211110
Q ss_pred CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCC
Q 011267 151 QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (489)
Q Consensus 151 ~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g 230 (489)
....||.+++|||+.......+++....++...-.+............+++++|+|+|.++++.+..+.+++
T Consensus 219 --------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~a~~a~~lg 290 (564)
T PRK12771 219 --------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRLG 290 (564)
T ss_pred --------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHHHHHHHHcC
Confidence 112589999999987543334455555555433211111000111234789999999999999999999998
Q ss_pred -CcEEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE-----e----CCC-------
Q 011267 231 -LDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK-----L----EDG------- 292 (489)
Q Consensus 231 -~~V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~-----~----~~g------- 292 (489)
.+|+++.+.+.. ++. .. ..+. ...+.||++++ +..+.++..++++.+ +++ + .+|
T Consensus 291 a~~v~ii~r~~~~~~~~-~~----~~~~-~a~~~GVki~~-~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g 362 (564)
T PRK12771 291 AEEVTIVYRRTREDMPA-HD----EEIE-EALREGVEINW-LRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTG 362 (564)
T ss_pred CCEEEEEEecCcccCCC-CH----HHHH-HHHHcCCEEEe-cCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCC
Confidence 578998887542 221 11 2222 34567999999 999999975444432 322 1 122
Q ss_pred --cEEEcCEEEEccCCCCCCchhhh-cCCeecCCcEEeCC-CCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHH
Q 011267 293 --STIDADTIVIGIGAKPTVSPFER-VGLNSSVGGIQVDG-QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSA 368 (489)
Q Consensus 293 --~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g 368 (489)
+++++|.||+|+|..|++.++++ .++..++|.+.||+ +++|+.|+|||+||++..+. ++..|..+|
T Consensus 363 ~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~----------~v~~Av~~G 432 (564)
T PRK12771 363 EEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTGRPGVFAGGDMVPGPR----------TVTTAIGHG 432 (564)
T ss_pred ceEEEECCEEEECcCCCCchhhhhhccCcccCCCCEEeCCCCccCCCCCEEeccCcCCCch----------HHHHHHHHH
Confidence 37999999999999999888885 57764467799998 78899999999999986432 456688888
Q ss_pred HHHHHHHh
Q 011267 369 QHCIKALL 376 (489)
Q Consensus 369 ~~~a~~l~ 376 (489)
+.+|.+|.
T Consensus 433 ~~aA~~i~ 440 (564)
T PRK12771 433 KKAARNID 440 (564)
T ss_pred HHHHHHHH
Confidence 88888774
|
|
| >KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-32 Score=248.15 Aligned_cols=392 Identities=22% Similarity=0.330 Sum_probs=261.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----------C----CCCCCCc------cccCCCCC-CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----------P----YERPALT------KGYLFPLD-KK 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----------~----y~~~~l~------~~~~~~~~-~~ 107 (489)
...+|++|||||..|+++|+..++.|. ++.|+|..-.. | |....++ +.|-++.+ ..
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GA---kv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~ 94 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGA---KVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEG 94 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCc---eEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCcccccc
Confidence 357999999999999999999999976 68888876221 1 1111111 11111110 00
Q ss_pred CCCCCCCccccCCCCCCCChhHHH----HCCcEEEeCCcEEEEeCCCCEEEeCCCeE--EeeCcEEecCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCVGSGGERQTPEWYK----EKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~~~V~~id~~~~~v~~~~g~~--i~yd~lvlATG~~~~~~p~~~ 181 (489)
..++.-+. ........++...|+ +.+++++.+ +..-+++..-+|...||.+ +.+.+++||||++|. .|++|
T Consensus 95 ~fdW~~ik-~krdayi~RLngIY~~~L~k~~V~~i~G-~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIp 171 (478)
T KOG0405|consen 95 SFDWKVIK-QKRDAYILRLNGIYKRNLAKAAVKLIEG-RARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIP 171 (478)
T ss_pred CCcHHHHH-hhhhHHHHHHHHHHHhhccccceeEEee-eEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCC
Confidence 01110000 000011112222332 346777775 5566667666788888853 688999999999997 57755
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|.++ - .|++.+.+....+++++|+|+|++++|+|..++.+|.++.++.|.+.+|. .||+.+++.+.+.++.
T Consensus 172 G~E~-----g---idSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR-~FD~~i~~~v~~~~~~ 242 (478)
T KOG0405|consen 172 GAEL-----G---IDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLR-GFDEMISDLVTEHLEG 242 (478)
T ss_pred chhh-----c---cccccccchhhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhc-chhHHHHHHHHHHhhh
Confidence 5432 2 23455555556899999999999999999999999999999999999997 5999999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCe
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 338 (489)
+||++|. ++.++++.+..++... +....|..-.+|.++||+|+.|++.- |++.|++.+ +|-|.||++.+|++|+|
T Consensus 243 ~ginvh~-~s~~~~v~K~~~g~~~-~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~Tnvp~I 320 (478)
T KOG0405|consen 243 RGINVHK-NSSVTKVIKTDDGLEL-VITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQNTNVPSI 320 (478)
T ss_pred cceeecc-cccceeeeecCCCceE-EEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEeccccCCCCce
Confidence 9999999 9999999987777553 44455655669999999999999863 788999987 46699999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---CCCCCcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---THTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
|++||++.- ++....|...|+..++.+.++. ...|..+|. .+|.++. +..+|....
T Consensus 321 ~avGDv~gk----------~~LTPVAiaagr~la~rlF~~~~~~kldY~nVp~---vVFshP~------igtVGLtE~EA 381 (478)
T KOG0405|consen 321 WAVGDVTGK----------INLTPVAIAAGRKLANRLFGGGKDTKLDYENVPC---VVFSHPP------IGTVGLTEEEA 381 (478)
T ss_pred EEeccccCc----------EecchHHHhhhhhHHHHhhcCCCCCccccccCce---EEEecCC------cccccCCHHHH
Confidence 999999963 3344568889999999998743 234666664 4555542 223333321
Q ss_pred -------cE-EEEccC-----------CCcEEEEEE--ECCEEEEEEeccCCHHHhHH-HHHHHhcCCCC-Ch-hhhcCC
Q 011267 414 -------ET-IEIGNF-----------DPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFV-DK-AKLQQA 469 (489)
Q Consensus 414 -------~~-~~~~~~-----------~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~-~~-~~~~~~ 469 (489)
++ +....| +.-+.++.. +++|++|++++..++.++.+ +.-+++.+.+- +. .-+.-|
T Consensus 382 iekyg~~~i~vy~s~F~pm~~a~~~~k~kt~mKlvc~~~~eKVvG~hm~G~~s~EilQGf~VAvKmGaTKadFD~tVaIH 461 (478)
T KOG0405|consen 382 IEKYGKGDIKVYTSKFNPMKYAMSGRKEKTLMKLVCAGKSEKVVGVHMCGDDSAEILQGFAVAVKMGATKADFDSTVAIH 461 (478)
T ss_pred HHHhCccceEEEecCCchhHhHhhcCCcceEEEEEEecCCCcEEEEEEecCCcHHHHhhhhhheecCcchhhhccceeec
Confidence 11 111111 112233333 56999999987777665443 23344444322 22 223345
Q ss_pred CcHHHHH
Q 011267 470 SSVEEAL 476 (489)
Q Consensus 470 ~~~~e~~ 476 (489)
||-.|-|
T Consensus 462 PTSAEEl 468 (478)
T KOG0405|consen 462 PTSAEEL 468 (478)
T ss_pred CCCHHHh
Confidence 5554443
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=257.00 Aligned_cols=268 Identities=26% Similarity=0.350 Sum_probs=201.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 127 (489)
++.+||+|||||||||+||.++.+.+.+ .++|++....-.| +.... ....+|+++. ..+.+...+..
T Consensus 1 ~~~~DviIIG~GPAGl~AAiya~r~~l~--~~li~~~~~~gg~---------~~~~~-~venypg~~~~~~g~~L~~~~~ 68 (305)
T COG0492 1 MKIYDVIIIGGGPAGLTAAIYAARAGLK--VVLILEGGEPGGQ---------LTKTT-DVENYPGFPGGILGPELMEQMK 68 (305)
T ss_pred CceeeEEEECCCHHHHHHHHHHHHcCCC--cEEEEecCCcCCc---------cccce-eecCCCCCccCCchHHHHHHHH
Confidence 3578999999999999999999999762 2566665432211 11111 2334455443 33333334445
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+.....++++.. ..|..++... +.|.++++. +.+++||||||..++. +..++.. ..+++++.+ ++.
T Consensus 69 ~~a~~~~~~~~~-~~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~-~~~~~e~e~~g~gv~yc~~---cdg--- 139 (305)
T COG0492 69 EQAEKFGVEIVE-DEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARK-LGVPGEEEFEGKGVSYCAT---CDG--- 139 (305)
T ss_pred HHHhhcCeEEEE-EEEEEEeecCceEEEEECCCe-EEEeEEEECcCCcccC-CCCCcchhhcCCceEEeee---cCc---
Confidence 556667888887 6888888774 688888888 9999999999999874 4333311 246777643 222
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSD 281 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~ 281 (489)
+..+++++|||||.+++|.|..|.+.+.+|++++|++.+-+ .+.+.+.+++. +|+++. ++.++++..+
T Consensus 140 -~~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra-------~~~~~~~l~~~~~i~~~~-~~~i~ei~G~-- 208 (305)
T COG0492 140 -FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRA-------EEILVERLKKNVKIEVLT-NTVVKEILGD-- 208 (305)
T ss_pred -cccCCeEEEEcCCHHHHHHHHHHHHhcCeEEEEecCcccCc-------CHHHHHHHHhcCCeEEEe-CCceeEEecC--
Confidence 35678999999999999999999999999999999986654 23445556655 899999 9999999833
Q ss_pred CcEEEEEeCCC----cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 282 GRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 282 ~~v~~v~~~~g----~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+ +..|++++. +.+.+|.+++++|..|++++++..+...++|.|.+|+.++||+|+|||+||++....
T Consensus 209 ~-v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~~~~TsvpGifAaGDv~~~~~ 279 (305)
T COG0492 209 D-VEGVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKGLGVLDENGYIVVDEEMETSVPGIFAAGDVADKNG 279 (305)
T ss_pred c-cceEEEEecCCceEEEEeceEEEecCCCCchHHHhhccccCCCCcEEcCCCcccCCCCEEEeEeeccCcc
Confidence 3 567777763 278999999999999999999998884456889999999999999999999998764
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-31 Score=278.18 Aligned_cols=285 Identities=20% Similarity=0.305 Sum_probs=194.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+.+||+||||||||++||..|++.|+ +|+|||++.... . ..... ....+++.....+........+.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~---~V~liE~~~~GG-~-~~~~~--------~i~~~pg~~~~~~~~l~~~l~~~ 69 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKL---DTLIIEKDDFGG-Q-ITITS--------EVVNYPGILNTTGPELMQEMRQQ 69 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCc-e-EEecc--------ccccCCCCcCCCHHHHHHHHHHH
Confidence 45899999999999999999999876 799999864321 1 00000 00011111100011111222344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHHhh
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~~~ 204 (489)
+++.+++++ .++|+.++.+.. .+.+.++ .+.|++||+|||+.|+. |.++|.. ..+++++..... ..
T Consensus 70 ~~~~gv~~~-~~~V~~i~~~~~~~~V~~~~g-~~~a~~lVlATGa~p~~-~~ipG~~~~~~~~v~~~~~~~~------~~ 140 (555)
T TIGR03143 70 AQDFGVKFL-QAEVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRK-LGFPGEEEFTGRGVAYCATCDG------EF 140 (555)
T ss_pred HHHcCCEEe-ccEEEEEEecCCEEEEEecCC-EEEEeEEEECCCCccCC-CCCCCHHHhCCceEEEEeecCh------hh
Confidence 566789986 468999987653 5666555 58999999999999874 4455532 234544432211 23
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++++|||||++|+|+|..|.++|.+|+++++.+.+.. .... ..+.++..||++++ ++.|+++.. ++.+
T Consensus 141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~---~~~~---~~~~~~~~gV~i~~-~~~V~~i~~--~~~v 211 (555)
T TIGR03143 141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTC---AKLI---AEKVKNHPKIEVKF-NTELKEATG--DDGL 211 (555)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcccc---CHHH---HHHHHhCCCcEEEe-CCEEEEEEc--CCcE
Confidence 4689999999999999999999999999999999876532 2222 22334557999999 999999973 3444
Q ss_pred EEEEe---CCCcEE----EcCE----EEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccC
Q 011267 285 AAVKL---EDGSTI----DADT----IVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 285 ~~v~~---~~g~~i----~aD~----vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~ 352 (489)
..+.+ .+|++. ++|. |++++|++|++.+++. +++.+ +|+|.||++++|++|+|||+|||+....
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~-~l~l~~~G~I~vd~~~~Ts~p~IyAaGDv~~~~~--- 287 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG-VVELDKRGYIPTNEDMETNVPGVYAAGDLRPKEL--- 287 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh-hcccCCCCeEEeCCccccCCCCEEEceeccCCCc---
Confidence 33332 456532 3676 9999999999988765 46665 5779999999999999999999975221
Q ss_pred CcccccccHHHHHHHHHHHHHHH
Q 011267 353 DRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
..+..|..+|+.||.+|
T Consensus 288 ------~~v~~A~~~G~~Aa~~i 304 (555)
T TIGR03143 288 ------RQVVTAVADGAIAATSA 304 (555)
T ss_pred ------chheeHHhhHHHHHHHH
Confidence 12344777787777776
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=257.15 Aligned_cols=288 Identities=24% Similarity=0.278 Sum_probs=196.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...++|+|||+|++|+++|..|++.|. +|+++|+.+..... +..+ .+....+... .....+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~---~~~~--~~~~~~~~~~-----------~~~~~~ 76 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGY---EVHVYDKLPEPGGL---MLFG--IPEFRIPIER-----------VREGVK 76 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCce---eeec--CcccccCHHH-----------HHHHHH
Confidence 356799999999999999999999876 79999987653211 0000 0000000000 011234
Q ss_pred HHHHCCcEEEeCCcEEEEeC----CC-----CEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDI----EK-----QTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADAD 198 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~----~~-----~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~ 198 (489)
.+.+.+++++.++.+..++. .. ..+..+ +..+.||+||||||+. +. .|.++|.+.++++... ....
T Consensus 77 ~l~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~-~~~ipg~~~~~v~~~~--~~~~ 152 (352)
T PRK12770 77 ELEEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR-KLGIPGEDLPGVYSAL--EYLF 152 (352)
T ss_pred HHHhCCeEEecCcEEeeccccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC-cCCCCCccccCceeHH--HHHH
Confidence 45566999998877654432 01 111111 2247899999999994 54 4666676666665432 1222
Q ss_pred HHHHh-----------hcCCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 199 ALISS-----------LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 199 ~~~~~-----------~~~~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
.+... ...+++++|||+|++|+|+|..|...|.+ |+++++.+.... + ......+.|+++||++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~----~-~~~~~~~~l~~~gi~i 227 (352)
T PRK12770 153 RIRAAKLGYLPWEKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEA----P-AGKYEIERLIARGVEF 227 (352)
T ss_pred HhhhccccccccccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhC----C-CCHHHHHHHHHcCCEE
Confidence 21110 01258999999999999999999999997 999987754211 1 1133445688999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEe--------------------CCCcEEEcCEEEEccCCCCCCchhhh-cCCeec-CCc
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKL--------------------EDGSTIDADTIVIGIGAKPTVSPFER-VGLNSS-VGG 324 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~--------------------~~g~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~-~g~ 324 (489)
++ ++.+++++.. +++..+.+ .+++++++|.||+++|++|++.++.+ +|+..+ +++
T Consensus 228 ~~-~~~v~~i~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~ 304 (352)
T PRK12770 228 LE-LVTPVRIIGE--GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGE 304 (352)
T ss_pred ee-ccCceeeecC--CcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCc
Confidence 99 9999998732 34434432 12357999999999999999887776 788775 467
Q ss_pred EEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 325 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 325 i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+.||++++|+.|+|||+|||+..+. .+..|+.+|+.+|.+|..
T Consensus 305 i~vd~~~~t~~~~vyaiGD~~~~~~----------~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 305 IVVDEKHMTSREGVFAAGDVVTGPS----------KIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred EeeCCCcccCCCCEEEEcccccCcc----------hHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987432 345688889998888753
|
|
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-30 Score=243.67 Aligned_cols=294 Identities=21% Similarity=0.344 Sum_probs=214.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..++++|||+|+|.+|.+.+..|-...+ +|++|++.+++.|. |.|+..-...-+ . ..+ ..-..
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~Y---dV~vVSPRnyFlFT-PLLpS~~vGTve-~-rSI-----------vEPIr 114 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLY---DVTVVSPRNYFLFT-PLLPSTTVGTVE-L-RSI-----------VEPIR 114 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhcccccc---ceEEeccccceEEe-eccCCcccccee-e-hhh-----------hhhHH
Confidence 3467899999999999999998877655 89999999997765 444321111100 0 000 01112
Q ss_pred hHHHHC--CcEEEeCCcEEEEeCCCCEEEeC----CC----eEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH
Q 011267 128 EWYKEK--GIEMIYQDPVTSIDIEKQTLITN----SG----KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA 197 (489)
Q Consensus 128 ~~~~~~--~i~~~~~~~V~~id~~~~~v~~~----~g----~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~ 197 (489)
...++. ++.++. ++.+.||++++.|++. ++ -.+.||+||+|+|+.+..+ .++|- .++-+.++..+|+
T Consensus 115 ~i~r~k~~~~~y~e-Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TF-gipGV-~e~~~FLKEv~dA 191 (491)
T KOG2495|consen 115 AIARKKNGEVKYLE-AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTF-GIPGV-EENAHFLKEVEDA 191 (491)
T ss_pred HHhhccCCCceEEe-cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCC-CCCch-hhchhhhhhhhHH
Confidence 222332 456665 6889999999987653 34 3689999999999998753 44443 3344577888899
Q ss_pred HHHHHhhc-----------------CCCcEEEECCCHHHHHHHHHHHhC--------------CCcEEEEccCCcchhhh
Q 011267 198 DALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGW--------------KLDTTIIFPENHLLQRL 246 (489)
Q Consensus 198 ~~~~~~~~-----------------~~~~vvViG~G~~g~e~A~~l~~~--------------g~~V~lv~~~~~~l~~~ 246 (489)
++++..+- .--+++|||||++|+|+|..|... -.+||+++..+.+|+ +
T Consensus 192 qeIR~~~~~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~-m 270 (491)
T KOG2495|consen 192 QEIRRKVIDNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILN-M 270 (491)
T ss_pred HHHHHHHHHHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHH-H
Confidence 88865431 012699999999999999998754 247999999999998 6
Q ss_pred hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCeec---
Q 011267 247 FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSS--- 321 (489)
Q Consensus 247 ~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--- 321 (489)
|+..+.++.++.+.+.||++.+ ++.|+.+... .+ .+...+| ++|++-+++|++|..|. ++.+.+.-..+
T Consensus 271 Fdkrl~~yae~~f~~~~I~~~~-~t~Vk~V~~~---~I-~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~ 344 (491)
T KOG2495|consen 271 FDKRLVEYAENQFVRDGIDLDT-GTMVKKVTEK---TI-HAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQG 344 (491)
T ss_pred HHHHHHHHHHHHhhhccceeec-ccEEEeecCc---EE-EEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccC
Confidence 9999999999999999999999 9999998632 22 2334455 47999999999999987 55554433332
Q ss_pred CCcEEeCCCCCC-CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 322 VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 322 ~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
+.++.||++||. +.+||||+|||+..+.. .++.+.|.++|..+|+++
T Consensus 345 rr~L~vDE~LrV~G~~nvfAiGDca~~~~~-------~~tAQVA~QqG~yLAk~f 392 (491)
T KOG2495|consen 345 RRGLAVDEWLRVKGVKNVFAIGDCADQRGL-------KPTAQVAEQQGAYLAKNF 392 (491)
T ss_pred ceeeeeeceeeccCcCceEEeccccccccC-------ccHHHHHHHHHHHHHHHH
Confidence 347999999998 89999999999943332 235677899999999987
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-28 Score=256.23 Aligned_cols=288 Identities=12% Similarity=0.091 Sum_probs=180.0
Q ss_pred Ccccccceeeeee-cceecCCCCCceeee-cccccccccccccc-----------------c-------cccCCCCCCcE
Q 011267 1 MASVSNSLSFKHG-LSLWCPQSPSLHRIR-HSSAKNFQRRGFVV-----------------A-------YSSFANENREF 54 (489)
Q Consensus 1 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----------------~-------~~~~~~~~~~v 54 (489)
+++.+||||..|| |+|+ +|+++|+++. +++++....|+..+ + +.+...+.++|
T Consensus 308 ii~~~NP~p~~~G~RVCp-~CE~aC~r~~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKV 386 (1028)
T PRK06567 308 IIVIDNPMVAATGHRICN-DCSKACIYQKQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNI 386 (1028)
T ss_pred HHHHhCCChHhhCCccCc-chHHHhcCCCCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeE
Confidence 3578999999999 9999 7999999987 68888888886544 1 11223467899
Q ss_pred EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC--CCC--C---------CCCccccCC-CCCCCCCCCCCCccccCC
Q 011267 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA--PYE--R---------PALTKGYLF-PLDKKPARLPGFHTCVGS 120 (489)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~--~y~--~---------~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 120 (489)
+||||||||++||++|++.|+ +||++|+.+.. +|+ . +.+...... ........++
T Consensus 387 aVVGaGPAGLsAA~~La~~Gh---~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp-------- 455 (1028)
T PRK06567 387 LVTGLGPAGFSLSYYLLRSGH---NVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGIT-------- 455 (1028)
T ss_pred EEECcCHHHHHHHHHHHhCCC---eEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcc--------
Confidence 999999999999999999988 79999986532 111 0 111110000 0001111111
Q ss_pred CCCCCChhHH------HHC--CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCC-CCCCCCCCCCCCCCceEee
Q 011267 121 GGERQTPEWY------KEK--GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC-TASRFPEKIGGYLPGVHYI 191 (489)
Q Consensus 121 ~~~~~~~~~~------~~~--~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~-~~~~~p~~~g~~~~gv~~~ 191 (489)
.+...+.+ .+. ++.++.+..+ +..++.++-....||+++||||+ .|+ .+.++|.+.+++...
T Consensus 456 --~R~~k~~l~~i~~il~~g~~v~~~~gv~l------G~dit~edl~~~gyDAV~IATGA~kpr-~L~IPGeda~GV~sA 526 (1028)
T PRK06567 456 --VRWDKNNLDILRLILERNNNFKYYDGVAL------DFNITKEQAFDLGFDHIAFCIGAGQPK-VLDIENFEAKGVKTA 526 (1028)
T ss_pred --ccchHHHHHHHHHHHhcCCceEEECCeEE------CccCCHHHHhhcCCCEEEEeCCCCCCC-CCCCCCccCCCeEEH
Confidence 01111111 122 3555545331 12222222223579999999999 576 455677777777765
Q ss_pred cCHHHHHHHHHh--------hcCCCcEEEECCCHHHHHHHHHHHh-----------------------------------
Q 011267 192 RDVADADALISS--------LEKAKKVVVVGGGYIGMEVAAAAVG----------------------------------- 228 (489)
Q Consensus 192 ~~~~~~~~~~~~--------~~~~~~vvViG~G~~g~e~A~~l~~----------------------------------- 228 (489)
.++....+.... +..+++|+|||||++|+|+|.....
T Consensus 527 ~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~ 606 (1028)
T PRK06567 527 SDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKL 606 (1028)
T ss_pred HHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHh
Confidence 432222111111 1235799999999999999994432
Q ss_pred ----------------CCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--
Q 011267 229 ----------------WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-- 290 (489)
Q Consensus 229 ----------------~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-- 290 (489)
+|. |+++.|+..--.... ..-.+.+.+ ..+.||+|+. +....++..+++|++.++++.
T Consensus 607 ~g~~~~~~~v~~l~~~~G~-VtIvYRr~~~empA~-~~~~eEv~~-A~eEGV~f~~-~~~P~~i~~d~~g~v~~l~~~~~ 682 (1028)
T PRK06567 607 FKEAKNNEELRKVFNKLGG-ATVYYRGRLQDSPAY-KLNHEELIY-ALALGVDFKE-NMQPLRINVDKYGHVESVEFENR 682 (1028)
T ss_pred hcchhccchhhhhhccCCc-eEEEecCChhhCCCC-CCCHHHHHH-HHHcCcEEEe-cCCcEEEEecCCCeEEEEEEEEE
Confidence 222 888887752211000 001233433 4567999999 999999986666777766553
Q ss_pred ------------C----------------CcEEEcCEEEEccCCCCCCchh
Q 011267 291 ------------D----------------GSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 291 ------------~----------------g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
+ ..+++||.||+|+|..||+.++
T Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~ 733 (1028)
T PRK06567 683 NRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFD 733 (1028)
T ss_pred ecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCccccc
Confidence 1 1469999999999999998763
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-27 Score=237.69 Aligned_cols=279 Identities=18% Similarity=0.254 Sum_probs=180.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
.+.++|+||||||||++||..|++... +.+|+|+|+.+.+ |-. +..+ ..+.......+ ...+..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~-g~~Vtv~E~~p~p-gGl--vr~g-vaP~~~~~k~v-----------~~~~~~ 87 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHD-GARVDIIERLPTP-FGL--VRSG-VAPDHPETKNV-----------TNQFSR 87 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCeEEEEecCCCC-cce--Eeec-cCCCcchhHHH-----------HHHHHH
Confidence 356789999999999999999997332 4589999998753 321 1110 11111100000 112334
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHH-------HHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVAD-------ADALI 201 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~-------~~~~~ 201 (489)
++.+.+++++.+..+ ++.+.+++-. ..||+||+|||+.+...+.++|.+.++++...++.. ...+.
T Consensus 88 ~~~~~~v~~~~nv~v------g~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~ 160 (491)
T PLN02852 88 VATDDRVSFFGNVTL------GRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLP 160 (491)
T ss_pred HHHHCCeEEEcCEEE------CccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhh
Confidence 566678888876433 2334443332 479999999999864445678888889887655421 11121
Q ss_pred HhhcCCCcEEEECCCHHHHHHHHHHHhC--------------------CC-cEEEEccCCcchhhhhCHHH---------
Q 011267 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGW--------------------KL-DTTIIFPENHLLQRLFTPSL--------- 251 (489)
Q Consensus 202 ~~~~~~~~vvViG~G~~g~e~A~~l~~~--------------------g~-~V~lv~~~~~~l~~~~~~~~--------- 251 (489)
..+..+++++|||+|++|+|+|..|.+. +. +|+++.|+...-..+...++
T Consensus 161 ~~~~~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~ 240 (491)
T PLN02852 161 PDLKSSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNV 240 (491)
T ss_pred hcccCCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCC
Confidence 1234579999999999999999998775 54 59999988632111111111
Q ss_pred ----------------------------HHHHHHHHHh---------cCcEEEEcCceEEEEEeC--CCCcEEEEEeC--
Q 011267 252 ----------------------------AQRYEQLYQQ---------NGVKFVKVGASIKNLEAG--SDGRVAAVKLE-- 290 (489)
Q Consensus 252 ----------------------------~~~l~~~l~~---------~Gv~~~~~~~~v~~i~~~--~~~~v~~v~~~-- 290 (489)
.+.+.+...+ ++|.|++ ....++|..+ +++++.++++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f-~~sP~ei~~~~~~~~~v~~l~~~~~ 319 (491)
T PLN02852 241 RVRIKEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVF-FRNPTRFLDSGDGNGHVAGVKLERT 319 (491)
T ss_pred ceeechhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEc-cCCCeEEEccCCCCCcEEEEEEEEe
Confidence 1122222222 5799999 8999999742 23577777663
Q ss_pred ---------------CC--cEEEcCEEEEccCCC--CCCch-h-hhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccC
Q 011267 291 ---------------DG--STIDADTIVIGIGAK--PTVSP-F-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 291 ---------------~g--~~i~aD~vi~a~G~~--p~~~~-~-~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~ 348 (489)
+| ++++||.||.++|++ |...+ + ...++..+ +|.|.+|+.++|+.|+|||+|||...+
T Consensus 320 ~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp 399 (491)
T PLN02852 320 VLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGP 399 (491)
T ss_pred ecCCCcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCC
Confidence 12 259999999999998 55443 3 33345444 577999988899999999999999876
Q ss_pred Ccc
Q 011267 349 LKM 351 (489)
Q Consensus 349 ~~~ 351 (489)
...
T Consensus 400 ~gv 402 (491)
T PLN02852 400 TGI 402 (491)
T ss_pred CCe
Confidence 543
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.6e-26 Score=250.73 Aligned_cols=280 Identities=16% Similarity=0.141 Sum_probs=191.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.+||+||||||||++||.++++.|. +|+|+|+++...-. +... .. .+++.. .........+.+
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~---~V~liD~~~~~GG~-------~~~~-~~---~~~g~~---~~~~~~~~~~~l 225 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGA---RVILVDEQPEAGGS-------LLSE-AE---TIDGKP---AADWAAATVAEL 225 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCCCCCe-------eecc-cc---ccCCcc---HHHHHHHHHHHH
Confidence 5799999999999999999999876 79999998664211 0000 00 000000 000001122233
Q ss_pred HHC-CcEEEeCCcEEEEeCCCCEEEe-----------C-----CCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecC
Q 011267 131 KEK-GIEMIYQDPVTSIDIEKQTLIT-----------N-----SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD 193 (489)
Q Consensus 131 ~~~-~i~~~~~~~V~~id~~~~~v~~-----------~-----~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~ 193 (489)
... +++++.+++|..++........ . .-.++.|++||||||+.++. +.++|.+.+++++...
T Consensus 226 ~~~~~v~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~-~pipG~~~pgV~~~~~ 304 (985)
T TIGR01372 226 TAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP-LVFANNDRPGVMLAGA 304 (985)
T ss_pred hcCCCcEEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC-CCCCCCCCCCcEEchH
Confidence 334 5999998888888654321111 0 01258999999999999874 5567888899887644
Q ss_pred HHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
.....+ ......+++++|||+|.+|+|+|..|.+.|. .|++++..+.+. ..+.+.+++.||++++ ++.
T Consensus 305 ~~~~l~-~~~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~---------~~l~~~L~~~GV~i~~-~~~ 373 (985)
T TIGR01372 305 ARTYLN-RYGVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVS---------PEARAEARELGIEVLT-GHV 373 (985)
T ss_pred HHHHHH-hhCcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchh---------HHHHHHHHHcCCEEEc-CCe
Confidence 332211 1112357999999999999999999999996 478887765432 2355678899999999 999
Q ss_pred EEEEEeCCCCcEEEEEeC----CCcEEEcCEEEEccCCCCCCchhhhcCCeec--C--CcEEeCCCCCCCCCCeEEeccc
Q 011267 273 IKNLEAGSDGRVAAVKLE----DGSTIDADTIVIGIGAKPTVSPFERVGLNSS--V--GGIQVDGQFRTRMPGIFAIGDV 344 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~----~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--~--g~i~vd~~~~t~~~~Iya~GD~ 344 (489)
++++.. ++.+..|++. ++++++||.|+++.|.+|+++++..++.+.. . +... -.|+.|+||++||+
T Consensus 374 v~~i~g--~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~----~~t~v~gVyaaGD~ 447 (985)
T TIGR01372 374 VAATEG--GKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFL----PGDAVQGCILAGAA 447 (985)
T ss_pred EEEEec--CCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCcee----cCCCCCCeEEeecc
Confidence 999973 3455556654 4568999999999999999999988876542 1 1111 13779999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 345 AAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
+... ....|..+|..||..++
T Consensus 448 ~g~~-----------~~~~A~~eG~~Aa~~i~ 468 (985)
T TIGR01372 448 NGLF-----------GLAAALADGAAAGAAAA 468 (985)
T ss_pred CCcc-----------CHHHHHHHHHHHHHHHH
Confidence 8643 33457777877777664
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-27 Score=240.87 Aligned_cols=334 Identities=18% Similarity=0.247 Sum_probs=210.7
Q ss_pred ccceeeeeecceecCCCCCceeee--ccccccccccccccc------cc---cCCCCCCcEEEEcCchHHHHHHHHHHHc
Q 011267 5 SNSLSFKHGLSLWCPQSPSLHRIR--HSSAKNFQRRGFVVA------YS---SFANENREFVIVGGGNAAGYAARTFVEH 73 (489)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------~~---~~~~~~~~vvIIGgG~AGl~aA~~L~~~ 73 (489)
+|+||++|||+|+.||+++|..+. +++.+..+++...+. .+ |...+.++|.|||+|||||+||.+|.+.
T Consensus 1728 tnnfpeftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~ 1807 (2142)
T KOG0399|consen 1728 TNNFPEFTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKA 1807 (2142)
T ss_pred hCCCccccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhc
Confidence 799999999999999999999988 777777777777662 22 2344678999999999999999999999
Q ss_pred CCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEE
Q 011267 74 GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTL 153 (489)
Q Consensus 74 g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v 153 (489)
|+ .|++.|+..... +++.- .-....+..+ ...+..+.+.+.||+|+.++++- +.+
T Consensus 1808 gh---~v~vyer~dr~g--------gll~y-gipnmkldk~-------vv~rrv~ll~~egi~f~tn~eig------k~v 1862 (2142)
T KOG0399|consen 1808 GH---TVTVYERSDRVG--------GLLMY-GIPNMKLDKF-------VVQRRVDLLEQEGIRFVTNTEIG------KHV 1862 (2142)
T ss_pred Cc---EEEEEEecCCcC--------ceeee-cCCccchhHH-------HHHHHHHHHHhhCceEEeecccc------ccc
Confidence 98 699988776532 22210 0000000000 01334567788899999887652 333
Q ss_pred EeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHH--HHHHHh-------hcCCCcEEEECCCHHHHHHH
Q 011267 154 ITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADA--DALISS-------LEKAKKVVVVGGGYIGMEVA 223 (489)
Q Consensus 154 ~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~--~~~~~~-------~~~~~~vvViG~G~~g~e~A 223 (489)
.+ |+-.-.+|.+|+|+|+. |+.+ +++|.++.|++..-.+.+. +.+... ...+|+|+|||||-+|.++.
T Consensus 1863 s~-d~l~~~~daiv~a~gst~prdl-pv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dci 1940 (2142)
T KOG0399|consen 1863 SL-DELKKENDAIVLATGSTTPRDL-PVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDCI 1940 (2142)
T ss_pred cH-HHHhhccCeEEEEeCCCCCcCC-CCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCcccccc
Confidence 32 33334789999999986 4544 4678888888654322221 111111 13578999999999999999
Q ss_pred HHHHhCCCc-EEEEccCC---------cch---hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-
Q 011267 224 AAAVGWKLD-TTIIFPEN---------HLL---QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL- 289 (489)
Q Consensus 224 ~~l~~~g~~-V~lv~~~~---------~~l---~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~- 289 (489)
..-.++|.+ |.-++--+ .++ |+.|--++...-. -+..|-+.++|..--+++..++++.++++.+
T Consensus 1941 gtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~--~~~~g~dpr~y~vltk~f~~~~~g~v~gl~~v 2018 (2142)
T KOG0399|consen 1941 GTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEA--KEHYGSDPRTYSVLTKRFIGDDNGNVTGLETV 2018 (2142)
T ss_pred ccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHH--HHHhCCCcceeeeeeeeeeccCCCceeeEEEE
Confidence 888888874 32222111 111 2222222222111 1222333333223334444444444433322
Q ss_pred -----------------C-CCcEEEcCEEEEccCCC-CCCchhhhcCCeecC-CcEEe-CCCCCCCCCCeEEeccccccC
Q 011267 290 -----------------E-DGSTIDADTIVIGIGAK-PTVSPFERVGLNSSV-GGIQV-DGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 290 -----------------~-~g~~i~aD~vi~a~G~~-p~~~~~~~~gl~~~~-g~i~v-d~~~~t~~~~Iya~GD~a~~~ 348 (489)
. +.+.++||+||+|.|+. |.....++++++.+. +.|.. +..+.|.++.|||+|||-+..
T Consensus 2019 rvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~vfaagdcrrgq 2098 (2142)
T KOG0399|consen 2019 RVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGDCRRGQ 2098 (2142)
T ss_pred EEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccceeecccccCCc
Confidence 1 23579999999999997 544567888998873 33543 456889999999999999865
Q ss_pred CccCCcccccccHHHHHHHHHHHHH
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIK 373 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~ 373 (489)
.-. ++.++.+++.|+.+-.
T Consensus 2099 slv------vwai~egrq~a~~vd~ 2117 (2142)
T KOG0399|consen 2099 SLV------VWAIQEGRQAARQVDE 2117 (2142)
T ss_pred eEE------EEEehhhhHHHHHHHH
Confidence 432 4555555555555444
|
|
| >KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9e-26 Score=207.57 Aligned_cols=208 Identities=27% Similarity=0.447 Sum_probs=162.4
Q ss_pred EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 160 LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 160 ~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+.++.++||||.+|+ .|.+||. ..+.- .++.+......+.+.+|||+|++++|+|..|...|.+|++..|+
T Consensus 159 ~~ta~~fvIatG~RPr-Yp~IpG~----~Ey~I---TSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS 230 (503)
T KOG4716|consen 159 FLTAENFVIATGLRPR-YPDIPGA----KEYGI---TSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS 230 (503)
T ss_pred EeecceEEEEecCCCC-CCCCCCc----eeeee---cccccccccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE
Confidence 5789999999999998 4665552 22321 34556665567788899999999999999999999999998876
Q ss_pred CcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCCCCCch--
Q 011267 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSP-- 312 (489)
Q Consensus 240 ~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~-- 312 (489)
-+| +.||.++++.+.+++++.||+|.. ...+++++..++++. .|... .++ +-.+|.|+||+|+.+.++-
T Consensus 231 -I~L-rGFDqdmae~v~~~m~~~Gikf~~-~~vp~~Veq~~~g~l-~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~ 306 (503)
T KOG4716|consen 231 -ILL-RGFDQDMAELVAEHMEERGIKFLR-KTVPERVEQIDDGKL-RVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLN 306 (503)
T ss_pred -eec-ccccHHHHHHHHHHHHHhCCceee-cccceeeeeccCCcE-EEEeecccccccccchhhhhhhhhccccchhhcC
Confidence 333 469999999999999999999998 878888887777763 23322 222 3468999999999998763
Q ss_pred hhhcCCeec--CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCc
Q 011267 313 FERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPY 388 (489)
Q Consensus 313 ~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~ 388 (489)
|+..|++.+ .+.|++|+.-+|++|+|||+||+.... +|....|.+.|+.+|+.|.++... .|..+|.
T Consensus 307 L~~~GVk~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~k---------pELTPvAIqsGrlLa~Rlf~gs~q~~dy~~V~T 377 (503)
T KOG4716|consen 307 LDNAGVKTNEKSGKIPVDDEEATNVPYVYAVGDILEDK---------PELTPVAIQSGRLLARRLFAGSTQLMDYDDVAT 377 (503)
T ss_pred CCccceeecccCCccccChHHhcCCCceEEecceecCC---------cccchhhhhhchHHHHHHhcCcceeeeccCCce
Confidence 677888874 577999999999999999999998743 345556999999999999876533 4555553
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-26 Score=233.04 Aligned_cols=334 Identities=23% Similarity=0.237 Sum_probs=227.6
Q ss_pred ccccceeeeeecceecC--CCCCceeee--ccccccccccccccc---------cccCCCCCCcEEEEcCchHHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR--HSSAKNFQRRGFVVA---------YSSFANENREFVIVGGGNAAGYAART 69 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~vvIIGgG~AGl~aA~~ 69 (489)
..+|+||++|||+|+.+ |.++|.... .++++....++..+. ..+.+.+.++|.||||||||++||..
T Consensus 62 ~~tn~~p~~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~ 141 (457)
T COG0493 62 HKTNNLPAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADD 141 (457)
T ss_pred HHhCCCccccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHH
Confidence 56899999999999998 999999974 778888877777764 22224456899999999999999999
Q ss_pred HHHcCCCCCcEEEEcCCCCCCCCCCCCccccCC---CCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEE
Q 011267 70 FVEHGMADGRLCIVSKEAYAPYERPALTKGYLF---PLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSI 146 (489)
Q Consensus 70 L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~i 146 (489)
|.+.|+ .||++|+.+... +++. +..+.+.+ ...+..+.+++.|++|++++++-
T Consensus 142 L~~~G~---~Vtv~e~~~~~G--------Gll~yGIP~~kl~k~-----------i~d~~i~~l~~~Gv~~~~~~~vG-- 197 (457)
T COG0493 142 LSRAGH---DVTVFERVALDG--------GLLLYGIPDFKLPKD-----------ILDRRLELLERSGVEFKLNVRVG-- 197 (457)
T ss_pred HHhCCC---eEEEeCCcCCCc--------eeEEecCchhhccch-----------HHHHHHHHHHHcCeEEEEcceEC--
Confidence 999988 699988766532 2221 11111111 12345677888999999986652
Q ss_pred eCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh---------cCCCcEEEECCCH
Q 011267 147 DIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---------EKAKKVVVVGGGY 217 (489)
Q Consensus 147 d~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~---------~~~~~vvViG~G~ 217 (489)
+.++++.= .-.||.++++||+.-...-.++|.+.++++..-++.......... ..+++++|||+|.
T Consensus 198 ----~~it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~ 272 (457)
T COG0493 198 ----RDITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGD 272 (457)
T ss_pred ----CcCCHHHH-HHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCC
Confidence 12222211 136799999999864334456777778876554333222211111 1238999999999
Q ss_pred HHHHHHHHHHhCCC-cEEEEccCCcchhh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----
Q 011267 218 IGMEVAAAAVGWKL-DTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE----- 290 (489)
Q Consensus 218 ~g~e~A~~l~~~g~-~V~lv~~~~~~l~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~----- 290 (489)
++++++....++|. .|+.+.+...--.. ..+........+...++|+++.+ .....++..+++|++..+.+.
T Consensus 273 Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~-~~~~~~~~~~e~GrV~~~~~~~~~~~ 351 (457)
T COG0493 273 TAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLP-FVQPKAFIGNEGGRVTGVKFGRVEPG 351 (457)
T ss_pred CHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccc-cCCceeEeecCCCcEeeeeccccccc
Confidence 99999999999998 57766422211000 01112234455667888999888 888888887777877765431
Q ss_pred ---C-----------C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCC-CCCCCCeEEeccccccCCc
Q 011267 291 ---D-----------G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF-RTRMPGIFAIGDVAAFPLK 350 (489)
Q Consensus 291 ---~-----------g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~-~t~~~~Iya~GD~a~~~~~ 350 (489)
+ | .++++|.|+.++|..++... ....++..+ .|.+.+|+.+ +|+.|++||.||+..+..
T Consensus 352 ~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~~g~~- 430 (457)
T COG0493 352 EYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAVRGAA- 430 (457)
T ss_pred CcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceeccchh-
Confidence 1 2 35889999999999887433 223245554 5779999988 999999999999998533
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHh
Q 011267 351 MYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 351 ~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+..|+.+|+.+.
T Consensus 431 ---------~vv~ai~eGr~aak~i~ 447 (457)
T COG0493 431 ---------LVVWAIAEGREAAKAID 447 (457)
T ss_pred ---------hhhhHHhhchHHHHhhh
Confidence 23346677777766553
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-25 Score=203.44 Aligned_cols=271 Identities=21% Similarity=0.316 Sum_probs=192.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..+||+||||||||.+||.+.++.|.+.+ .+-|+-.....+... ..++...+...|......++.-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTG--l~aerfGGQvldT~~------------IENfIsv~~teGpkl~~ale~H 275 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTG--LVAERFGGQVLDTMG------------IENFISVPETEGPKLAAALEAH 275 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhh--hhhhhhCCeeccccc------------hhheeccccccchHHHHHHHHH
Confidence 46899999999999999999999987311 111211111111110 1111111111122112233455
Q ss_pred HHHCCcEEEeCCcEEEEeCC-----CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHH
Q 011267 130 YKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI 201 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~-----~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~ 201 (489)
.+++.+++....+++++.+. ..+|++++|-.+..+.+|+|||++.+.+ ++||.+ -+|+.|+.. ..
T Consensus 276 v~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~-nvPGE~e~rnKGVayCPH------CD 348 (520)
T COG3634 276 VKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNM-NVPGEDEYRNKGVAYCPH------CD 348 (520)
T ss_pred HhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcC-CCCchHHHhhCCeeeCCC------CC
Confidence 67788888777777777763 3589999999999999999999987653 445532 356666642 22
Q ss_pred HhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCC
Q 011267 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 202 ~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~ 280 (489)
..+.++|+|.|||||.+|+|.|-.|+..-..||+++-.+.+-. -+-+++.++. .+++++. |..-+++.. +
T Consensus 349 GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkA-------D~VLq~kl~sl~Nv~ii~-na~Ttei~G-d 419 (520)
T COG3634 349 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKA-------DAVLQDKLRSLPNVTIIT-NAQTTEVKG-D 419 (520)
T ss_pred CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchhhhh-------HHHHHHHHhcCCCcEEEe-cceeeEEec-C
Confidence 3467899999999999999999999998889999986654322 2344555554 4799999 999999983 3
Q ss_pred CCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCcc
Q 011267 281 DGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 351 (489)
Q Consensus 281 ~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~ 351 (489)
+.+|.++...+ | ..+.-+-|++-+|..||++||+.. ++.+ +|-|+||.+..|++|+|||+|||+..+.+.
T Consensus 420 g~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~-vel~~rGEIivD~~g~TsvpGvFAAGD~T~~~yKQ 495 (520)
T COG3634 420 GDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA-VELNRRGEIIVDARGETNVPGVFAAGDCTTVPYKQ 495 (520)
T ss_pred CceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhch-hhcCcCccEEEecCCCcCCCceeecCcccCCccce
Confidence 45666666543 3 246778899999999999999998 6665 567999999999999999999999877653
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=183.29 Aligned_cols=273 Identities=21% Similarity=0.303 Sum_probs=189.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCc-cccCCCCCCCCCCCCCCccc-cCCCCCCCChh
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT-KGYLFPLDKKPARLPGFHTC-VGSGGERQTPE 128 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (489)
+.+|+|||+|||+.+||.++++.-. +-+|+|.- ...... .+.+. ......++|+|+.. .+.+...+..+
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaarael---kPllfEG~-----~~~~i~pGGQLt-TTT~veNfPGFPdgi~G~~l~d~mrk 78 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAEL---KPLLFEGM-----MANGIAPGGQLT-TTTDVENFPGFPDGITGPELMDKMRK 78 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhccc---CceEEeee-----eccCcCCCceee-eeeccccCCCCCcccccHHHHHHHHH
Confidence 4589999999999999999998754 35666532 111111 12222 23345677888753 45555566667
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHh--h
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS--L 204 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~--~ 204 (489)
...++|.+++. .+|.++|...+ .+.+ +.+.+.+|.+|+|||+..+++. .||. .++.++-+-...+.-.... +
T Consensus 79 qs~r~Gt~i~t-EtVskv~~sskpF~l~t-d~~~v~~~avI~atGAsAkRl~-~pg~-ge~~fWqrGiSaCAVCDGaapi 154 (322)
T KOG0404|consen 79 QSERFGTEIIT-ETVSKVDLSSKPFKLWT-DARPVTADAVILATGASAKRLH-LPGE-GEGEFWQRGISACAVCDGAAPI 154 (322)
T ss_pred HHHhhcceeee-eehhhccccCCCeEEEe-cCCceeeeeEEEecccceeeee-cCCC-CcchHHhcccchhhcccCcchh
Confidence 77788999998 48999987664 4554 5556899999999999887543 3443 1221222222222222111 2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH-HHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~-~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
...+..+|||||-+++|-|..|.+++.+|++++|++.+-.+ ..++ +..+.-+|+++. |+.+.+...+ .+.
T Consensus 155 frnk~laVIGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs-------~~Mq~ra~~npnI~v~~-nt~~~ea~gd-~~~ 225 (322)
T KOG0404|consen 155 FRNKPLAVIGGGDSAMEEALFLTKYASKVYIIHRRDHFRAS-------KIMQQRAEKNPNIEVLY-NTVAVEALGD-GKL 225 (322)
T ss_pred hcCCeeEEEcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHH-------HHHHHHHhcCCCeEEEe-chhhhhhccC-ccc
Confidence 46788999999999999999999999999999999876442 2333 445556899999 8888777633 222
Q ss_pred E-----EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeC-CCCCCCCCCeEEeccccc
Q 011267 284 V-----AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 284 v-----~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~ 346 (489)
+ ..+.+.+.+.++.+-++.++|-.|++.+++. .++.+ +|.|++- ..-.||+|++||+||+..
T Consensus 226 l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g-qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 226 LNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG-QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred ccceEEEecccCcccccccceeEEEecCCchhhHhcC-ceeeccCceEEeccCcccccccceeeccccch
Confidence 2 2333334457999999999999999999987 67766 5777776 467799999999999985
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-23 Score=208.10 Aligned_cols=289 Identities=17% Similarity=0.176 Sum_probs=179.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCCC-----------------CccccCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERPA-----------------LTKGYLFPLDK 106 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~----y~~~~-----------------l~~~~~~~~~~ 106 (489)
..+.++|+|||||+|||+||++|++.|. +++++|+++..+ |.... ....+.....+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~---~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~ 83 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGH---TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPR 83 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCC---eEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCH
Confidence 3456899999999999999999999987 799999987553 21000 00000000000
Q ss_pred CCCCCCCCccc--------------cCCCCCCCChhHHHHCCcE--EEeCCcEEEEeCCCC--EEEeCCC--e--EEeeC
Q 011267 107 KPARLPGFHTC--------------VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ--TLITNSG--K--LLKYG 164 (489)
Q Consensus 107 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~--~v~~~~g--~--~i~yd 164 (489)
....++.++.. ...+....+.++.++.++. ++++++|+.+++... .|++.++ . +..||
T Consensus 84 ~~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d 163 (461)
T PLN02172 84 ECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFD 163 (461)
T ss_pred hhccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcC
Confidence 00011111110 0011112223445567877 888999999987654 4555432 2 45799
Q ss_pred cEEecCC--CCCCCCCCCCCC-CCCce-EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 165 SLIVATG--CTASRFPEKIGG-YLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 165 ~lvlATG--~~~~~~p~~~g~-~~~gv-~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+||+||| +.|. .|.++|. ..+|. ....++.+.+ ...+++|+|||+|.+|+|+|..|...+.+|+++.+..
T Consensus 164 ~VIvAtG~~~~P~-~P~ipG~~~f~G~~iHs~~yr~~~-----~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 164 AVVVCNGHYTEPN-VAHIPGIKSWPGKQIHSHNYRVPD-----PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred EEEEeccCCCCCc-CCCCCCcccCCceEEEecccCCcc-----ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 9999999 4565 4655553 23442 1111122211 1368999999999999999999999999999999875
Q ss_pred cchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCee
Q 011267 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 241 ~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
.+.. + ..+......+.. +..|..+. +++ .|++.||+++++|.||+|||++++.++|+..+
T Consensus 238 ~~~~----------~-~~~~~~~~~v~~-~~~I~~~~--~~g---~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~--- 297 (461)
T PLN02172 238 ESDT----------Y-EKLPVPQNNLWM-HSEIDTAH--EDG---SIVFKNGKVVYADTIVHCTGYKYHFPFLETNG--- 297 (461)
T ss_pred cccc----------c-ccCcCCCCceEE-CCccccee--cCC---eEEECCCCCccCCEEEECCcCCccccccCccc---
Confidence 3211 0 111122344566 77777665 233 47899999999999999999999999987543
Q ss_pred cCCcEEeCCCC------C---CC-CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 321 SVGGIQVDGQF------R---TR-MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 321 ~~g~i~vd~~~------~---t~-~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
.+.+|++. + .. .|+++.+|=.... ..+.....||+.+|+.+.+..
T Consensus 298 ---~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~-----------~~f~~~E~Qa~~~a~v~sG~~ 352 (461)
T PLN02172 298 ---YMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMG-----------IQFVMFEIQSKWVAAVLSGRV 352 (461)
T ss_pred ---ceeeCCCcchhhHHhhcCCCCCCcEEEEeccccc-----------cCchhHHHHHHHHHHHHcCCC
Confidence 34444321 1 12 3888888843211 123446778888888777543
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-22 Score=176.32 Aligned_cols=268 Identities=25% Similarity=0.366 Sum_probs=179.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
+.+|||||+||.+||.+|+..-. ..+|.||...+.. .|.. ..+ |+...+-...+- .+
T Consensus 1 kfivvgggiagvscaeqla~~~p-sa~illitass~vksvtn~~~--i~~-ylekfdv~eq~~---------------~e 61 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEP-SAEILLITASSFVKSVTNYQK--IGQ-YLEKFDVKEQNC---------------HE 61 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCC-CCcEEEEeccHHHHHHhhHHH--HHH-HHHhcCccccch---------------hh
Confidence 47999999999999999999864 7899999987642 1111 111 221111000000 00
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (489)
...+.. ++ ++ .|..++...+.+.+.+|.++.|++|+++||+.|...- .+ .-+.+...|+.+.++.++..+.+.|
T Consensus 62 lg~~f~-~~-~~-~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPklq~--E~-~n~~Iv~irDtDsaQllq~kl~kaK 135 (334)
T KOG2755|consen 62 LGPDFR-RF-LN-DVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPKLQV--EG-INPKIVGIRDTDSAQLLQCKLVKAK 135 (334)
T ss_pred hcccHH-HH-HH-hhhhhccccceEEecCCceeeEEEEEEecCCCcceee--cC-CCceEEEEecCcHHHHHHHHHhhcc
Confidence 000000 11 22 3666778889999999999999999999999986322 22 2456777888888888888899999
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC------------c------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG------------V------------ 264 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G------------v------------ 264 (489)
.|+|+|.|-+++|++..+.. .+|++....+.+...+|+|.+.+.+.-.+...+ +
T Consensus 136 ~VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg 213 (334)
T KOG2755|consen 136 IVLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVG 213 (334)
T ss_pred eEEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCcc
Confidence 99999999999999998875 579998888888888888888887776662211 0
Q ss_pred -----EEEE-----------------c-CceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 265 -----KFVK-----------------V-GASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 265 -----~~~~-----------------~-~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
+++. + ++-+....+.+...+.......| ..+.||.+++|+|+.||.+++-...++
T Consensus 214 ~algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq 293 (334)
T KOG2755|consen 214 PALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQ 293 (334)
T ss_pred cccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhhcccccccccccccceeeeeEEEeccccCcCceEEecChhh
Confidence 0000 0 00000000000011111111111 368899999999999999876554455
Q ss_pred e-cCCcEEeCCCCCCCCCCeEEecccccc
Q 011267 320 S-SVGGIQVDGQFRTRMPGIFAIGDVAAF 347 (489)
Q Consensus 320 ~-~~g~i~vd~~~~t~~~~Iya~GD~a~~ 347 (489)
. +++|+.||+.|+|+.|++||+||++..
T Consensus 294 ~~edggikvdd~m~tslpdvFa~gDvctt 322 (334)
T KOG2755|consen 294 ITEDGGIKVDDAMETSLPDVFAAGDVCTT 322 (334)
T ss_pred hccccCeeehhhccccccceeeecceecc
Confidence 4 468999999999999999999999973
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.7e-22 Score=181.41 Aligned_cols=188 Identities=30% Similarity=0.479 Sum_probs=130.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
||||||||+||++||.+|++.+. +++||++.+..+|....++...+............. . .....+.+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~---~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~ 70 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGA---KVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPA-R------LFKLVDQLKN 70 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHH-H------HGHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhcCCC---eEEEEecccccccccccccccccccccccccccccc-c------cccccccccc
Confidence 79999999999999999998765 799999887655544433322111100000000000 0 0011223367
Q ss_pred CCcEEEeCCcEEEEeCCCCEE----------EeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHH
Q 011267 133 KGIEMIYQDPVTSIDIEKQTL----------ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v----------~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~ 202 (489)
.+++++.++++.+++...+.+ ...++.++.||+||+|||+.|.. |.++|. +.....++..+++.+..
T Consensus 71 ~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~-~~i~g~--~~~~~~~~~~~~~~~~~ 147 (201)
T PF07992_consen 71 RGVEIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRT-PNIPGE--EVAYFLRGVDDAQRFLE 147 (201)
T ss_dssp HTHEEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEE-ESSTTT--TTECBTTSEEHHHHHHT
T ss_pred ceEEEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccce-eecCCC--ccccccccccccccccc
Confidence 899998889999999887742 23456789999999999998763 444453 22233466778888888
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
.....++++|||
T Consensus 148 ~~~~~~~v~VvG-------------------------------------------------------------------- 159 (201)
T PF07992_consen 148 LLESPKRVAVVG-------------------------------------------------------------------- 159 (201)
T ss_dssp HSSTTSEEEEES--------------------------------------------------------------------
T ss_pred cccccccccccc--------------------------------------------------------------------
Confidence 777777999999
Q ss_pred cEEEEEeCCCcEEEcCEEEEccCCCCCCchh-hhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccC
Q 011267 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPF-ERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 283 ~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~-~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~ 348 (489)
+++| +..+++.+ +|++.||+++||+.|||||+|||+..+
T Consensus 160 ---------------------------~~~l~~~~~~~~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 200 (201)
T PF07992_consen 160 ---------------------------TEFLAEKLGVELDENGFIKVDENLQTSVPGIYAAGDCAGIY 200 (201)
T ss_dssp ---------------------------TTTSTHHTTSTBTTTSSBEEBTTSBBSSTTEEE-GGGBEES
T ss_pred ---------------------------ccccccccccccccccccccccccccccccccccccccccC
Confidence 4556 78888885 677999999999999999999999764
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=163.49 Aligned_cols=296 Identities=20% Similarity=0.292 Sum_probs=190.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCc--cccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALT--KGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
.++++|+|||||.+|++.|..+.+.-. .++|-|||+...+-|+ |.+. .+.+...+.... .
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~-~g~vgIvep~e~HyYQ-PgfTLvGgGl~~l~~srr----------------~ 98 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLG-SGSVGIVEPAEDHYYQ-PGFTLVGGGLKSLDSSRR----------------K 98 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcC-CCceEEecchhhcccC-cceEEeccchhhhhhccC----------------c
Confidence 467899999999999999999977643 7899999999988666 5442 111111111000 0
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCC----CCCCceEeecCHHHHHHHHH
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG----GYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g----~~~~gv~~~~~~~~~~~~~~ 202 (489)
...+-..+.+.+. ..|.++++++++|.+.+|++|.||+||||+|..-. +..++| .+-|++.+..+....++..+
T Consensus 99 ~a~liP~~a~wi~-ekv~~f~P~~N~v~t~gg~eIsYdylviA~Giql~-y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~ 176 (446)
T KOG3851|consen 99 QASLIPKGATWIK-EKVKEFNPDKNTVVTRGGEEISYDYLVIAMGIQLD-YGKIKGLVEALDTPGVCSNYSPKYVDKVYK 176 (446)
T ss_pred ccccccCCcHHHH-HHHHhcCCCcCeEEccCCcEEeeeeEeeeeeceec-cchhcChHhhccCCCcccccChHHHHHHHH
Confidence 0001111222222 47888999999999999999999999999998754 344433 34566665555555555544
Q ss_pred hh---cCCCcEEEE--------CCCHHHHHHHH-HHHhCCCc--EEEEccCCcchhhhh-CHHHHHHHHHHHHhcCcEEE
Q 011267 203 SL---EKAKKVVVV--------GGGYIGMEVAA-AAVGWKLD--TTIIFPENHLLQRLF-TPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 203 ~~---~~~~~vvVi--------G~G~~g~e~A~-~l~~~g~~--V~lv~~~~~~l~~~~-~~~~~~~l~~~l~~~Gv~~~ 267 (489)
.+ +.+.-+--. |+-.=.+-++. .+++.|.+ +.++.... |+..| -...++.+++..+++.|++.
T Consensus 177 ~~~~fk~GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Ts--l~~iFgVk~Y~~AL~k~~~~rni~vn 254 (446)
T KOG3851|consen 177 ELMNFKKGNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTS--LPTIFGVKHYADALEKVIQERNITVN 254 (446)
T ss_pred HHHhccCCceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecC--ccceecHHHHHHHHHHHHHhcceEee
Confidence 43 333333333 33333333333 45666653 44444332 22233 35788899999999999998
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCC-CCCC-CCCCeEEec
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG-QFRT-RMPGIFAIG 342 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~-~~~t-~~~~Iya~G 342 (489)
. .....++...+...+.. -+++ | ++++++++-+..-..+. +.++.+.+....|++.||. .+|. .+||||++|
T Consensus 255 ~-krnLiEV~~~~~~AvFe-~L~kPG~t~ei~yslLHv~Ppms~p-e~l~~s~~adktGfvdVD~~TlQs~kypNVFgiG 331 (446)
T KOG3851|consen 255 Y-KRNLIEVRTNDRKAVFE-NLDKPGVTEEIEYSLLHVTPPMSTP-EVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIG 331 (446)
T ss_pred e-ccceEEEeccchhhHHH-hcCCCCceeEEeeeeeeccCCCCCh-hhhhcCcccCcccceecChhhhccccCCCceeec
Confidence 8 88888887432211111 1122 4 46889999998888776 7788887777678999997 6776 899999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
||+..|+.. +......|...+-+|++.
T Consensus 332 Dc~n~PnsK--------TaAAvaaq~~vv~~nl~~ 358 (446)
T KOG3851|consen 332 DCMNLPNSK--------TAAAVAAQSPVVDKNLTQ 358 (446)
T ss_pred cccCCCchh--------hHHHHHhcCchhhhhHHH
Confidence 999988753 222233445566667653
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=183.42 Aligned_cols=299 Identities=21% Similarity=0.288 Sum_probs=149.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CCC--------------CCccccC-CCCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----ERP--------------ALTKGYL-FPLDKKPARL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y----~~~--------------~l~~~~~-~~~~~~~~~~ 111 (489)
.++|+|||||++||++|++|++.|+ +++++|+++..+. ... ..++... ++..+.+.+.
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~---~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~ 77 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL---EVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY 77 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT----EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC---CCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence 3689999999999999999999987 7999999987641 110 0111111 1111222222
Q ss_pred CCCccccCCCCCCCChhHHHHCCc--EEEeCCcEEEEeCCC-------CEEEeCC-Ce--EEeeCcEEecCCCCCC-CCC
Q 011267 112 PGFHTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEK-------QTLITNS-GK--LLKYGSLIVATGCTAS-RFP 178 (489)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~-------~~v~~~~-g~--~i~yd~lvlATG~~~~-~~p 178 (489)
|.+++. ......+..+.+++++ .++++++|+++++.. -+|++.+ |+ +-.||+||+|||.... ..|
T Consensus 78 p~f~~~--~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P 155 (531)
T PF00743_consen 78 PDFPSH--SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIP 155 (531)
T ss_dssp SSSEBH--HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-
T ss_pred CCCCCH--HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCC
Confidence 322211 0111222344455666 478889999987532 2565543 43 3469999999997531 123
Q ss_pred C--CCCCC-CCce-EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-chhhhh------
Q 011267 179 E--KIGGY-LPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLF------ 247 (489)
Q Consensus 179 ~--~~g~~-~~gv-~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~l~~~~------ 247 (489)
. .+|.+ .+|- .+.+++.+. ...++|+|+|||+|.+|+++|..+.....+|++..|+.. ++++..
T Consensus 156 ~~~~~G~e~F~G~i~HS~~yr~~-----~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~ 230 (531)
T PF00743_consen 156 EPSFPGLEKFKGEIIHSKDYRDP-----EPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPF 230 (531)
T ss_dssp ----CTGGGHCSEEEEGGG--TG-----GGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC----------------
T ss_pred hhhhhhhhcCCeeEEccccCcCh-----hhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecccccccccccccccc
Confidence 2 23321 2221 222222221 124789999999999999999999999889988877642 222211
Q ss_pred ----------------CHHHHHHHH-HHHH------hcC--------------------------cEEEEcCceEEEEEe
Q 011267 248 ----------------TPSLAQRYE-QLYQ------QNG--------------------------VKFVKVGASIKNLEA 278 (489)
Q Consensus 248 ----------------~~~~~~~l~-~~l~------~~G--------------------------v~~~~~~~~v~~i~~ 278 (489)
+..+.+.+. +.+. ..| |.+. ..|+++..
T Consensus 231 D~~~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk---~~I~~~~~ 307 (531)
T PF00743_consen 231 DMVFSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVK---PDIKRFTE 307 (531)
T ss_dssp --------------------------------------------------------------------E---E-EEEE-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccc
Confidence 111111111 0110 011 1111 22333331
Q ss_pred CCCCcEEEEEeCCCcEE-EcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCC---CCCCCCeEEeccccccCCccCCc
Q 011267 279 GSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF---RTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~~i-~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~---~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
. .|.++||+++ ++|.||+|||++...++|++.-+...++.+..-.++ +...|++..+|=+... |
T Consensus 308 ---~---~v~F~DGs~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-----g- 375 (531)
T PF00743_consen 308 ---N---SVIFEDGSTEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-----G- 375 (531)
T ss_dssp ---S---EEEETTSEEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-----S-
T ss_pred ---c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-----c-
Confidence 1 5778999875 699999999999998888876554433222111111 1134778888844311 1
Q ss_pred ccccccHHHHHHHHHHHHHHHhcC
Q 011267 355 TARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
..+..+..||+.+|+.+.+.
T Consensus 376 ----~~fp~~ElQArw~a~v~sG~ 395 (531)
T PF00743_consen 376 ----SIFPIFELQARWAARVFSGR 395 (531)
T ss_dssp -----HHHHHHHHHHHHHHHHTTS
T ss_pred ----cccccccccccccccccccc
Confidence 12344778888888877653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-17 Score=147.26 Aligned_cols=177 Identities=23% Similarity=0.310 Sum_probs=99.3
Q ss_pred EEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--C----CCCC-ccccCCCCCCCCCCCCCC--cc---------
Q 011267 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E----RPAL-TKGYLFPLDKKPARLPGF--HT--------- 116 (489)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~----~~~l-~~~~~~~~~~~~~~~~~~--~~--------- 116 (489)
+|||||+|||++|.+|++.|.+ +++|+|+++...- . .+.+ +..........+ .+..+ ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~--~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 77 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGID--PVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLP-DFESFSFDDSPEWRWPHD 77 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS---CCCHSCHHHHHHHHHSBS
T ss_pred CEECcCHHHHHHHHHHHhCCCC--cEEEEeCCCCCCCeeEEeCCCCccccCccccccccCC-cccccccccCCCCCCCcc
Confidence 7999999999999999999872 4999999865431 1 0111 000000000000 00000 00
Q ss_pred -ccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCC--CCCCCCCCCC-CCCCceEe
Q 011267 117 -CVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGC--TASRFPEKIG-GYLPGVHY 190 (489)
Q Consensus 117 -~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~--~~~~~p~~~g-~~~~gv~~ 190 (489)
....+....+..+.++++++++.+++|+++.++. ..|++.++.++.+++||+|||. .|. .|..++ ... ....
T Consensus 78 ~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~-~p~~~g~~~~-~~~h 155 (203)
T PF13738_consen 78 FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPR-IPDIPGSAFR-PIIH 155 (203)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB----S-TTGGCS-EEEE
T ss_pred cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCC-cccccccccc-ceEe
Confidence 0000111122345567789999999999998754 4888989988999999999996 454 454555 222 2222
Q ss_pred ecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
..++.+. ....+++|+|||+|.+|+++|..|.+.|.+|+++.|++.
T Consensus 156 ~~~~~~~-----~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 156 SADWRDP-----EDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp GGG-STT-----GGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred hhhcCCh-----hhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 2111111 123579999999999999999999999999999999874
|
... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.69 E-value=3e-15 Score=144.94 Aligned_cols=295 Identities=22% Similarity=0.319 Sum_probs=170.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC-CCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-KPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 127 (489)
+...+++|||||+||++||+.|++.|+ ++.|+|+++........+.+- ++... ...-+ .-...
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~---~v~LVEKepsiGGrmak~~k~--FP~~dcs~C~L-----------aP~m~ 185 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGF---KVYLVEKEPSIGGRMAKLNKT--FPTNDCSICIL-----------APKMV 185 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCC---eEEEEecCCcccccHHhhhcc--CCCcccchhhc-----------cchhh
Confidence 446789999999999999999999998 699999999876554444431 12110 00000 00112
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC--CC------------------------------------------------------
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIE--KQ------------------------------------------------------ 151 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~--~~------------------------------------------------------ 151 (489)
+...+.++++++.++|..++-. ++
T Consensus 186 ~v~~hp~i~l~TyaeV~ev~G~vGnF~vki~kkpryVdd~CtgCg~C~~vCPve~~nefn~Gl~~~kAiy~p~~qaVp~~ 265 (622)
T COG1148 186 EVSNHPNIELITYAEVEEVSGSVGNFTVKIEKKPRYVDDKCTGCGACSEVCPVEVPNEFNEGLGKRKAIYIPFPQAVPLN 265 (622)
T ss_pred hhccCCceeeeeeeeeeeecccccceEEEEecccccccccccccccccccCCcccCcccccccccceeeeccchhhcccc
Confidence 2233344444444444442210 00
Q ss_pred ---------------------EEEeCCC-e--EEeeCcEEecCCCCCCCCCCCCCC---CCCceEeecCHHHHHHHHHhh
Q 011267 152 ---------------------TLITNSG-K--LLKYGSLIVATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSL 204 (489)
Q Consensus 152 ---------------------~v~~~~g-~--~i~yd~lvlATG~~~~~~p~~~g~---~~~gv~~~~~~~~~~~~~~~~ 204 (489)
.+.++.. + ++....+|+|||-.+......... ..+++. |-.+.+++.+.-
T Consensus 266 ~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVI---T~lElErml~~~ 342 (622)
T COG1148 266 YNIDPKHCIECGLCEKACPNEAVDLNQEPEEVELEVGAIIVATGYKPFDATRKEEYGYGKYPNVI---TNLELERMLNPN 342 (622)
T ss_pred cccChhhhccchhhhhcCCccccccCCCCcEEEEEeceEEEEccccccCcchhhhcCCCCCcchh---hHHHHHHHhccC
Confidence 1111111 1 467789999999876532221111 122222 222344544311
Q ss_pred -------------cCCCcEEEE---CCCH--------------HHHHHHHHHHhCC--CcEEEEccCCcchhhhhCHHHH
Q 011267 205 -------------EKAKKVVVV---GGGY--------------IGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA 252 (489)
Q Consensus 205 -------------~~~~~vvVi---G~G~--------------~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~~~~~~ 252 (489)
..+++|++| |+-- .++.-|...+++. .+|+++...-| .++..+-
T Consensus 343 GPT~GkvlrpSdg~~pKrVaFIqCVGSRD~~~~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiR----afG~~yE 418 (622)
T COG1148 343 GPTGGKVLRPSDGKPPKRVAFIQCVGSRDFQVGNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIR----AFGKDYE 418 (622)
T ss_pred CCCCceEEecCCCCCCceEEEEEEecCcCcccCChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEee----ccCccHH
Confidence 245677766 4421 2334444444443 36777665543 3555666
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCc---hhhhcCCeec-CC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVS---PFERVGLNSS-VG 323 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~---~~~~~gl~~~-~g 323 (489)
+++.+.-++.||+|+. .++.+|...+++++ .|+.+| | .++++|+||+++|+.|... +.+.+|+..+ +|
T Consensus 419 efY~~~Q~~~gV~fIR--Grvaei~e~p~~~l-~V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~g 495 (622)
T COG1148 419 EFYVRSQEDYGVRFIR--GRVAEIAEFPKKKL-IVRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDG 495 (622)
T ss_pred HHHHhhhhhhchhhhc--CChHHheeCCCCee-EEEEEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCC
Confidence 6777766689999997 57778776666662 344443 3 4689999999999998642 4566788876 56
Q ss_pred cEEeC-CCCC---CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 324 GIQVD-GQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 324 ~i~vd-~~~~---t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
++... +.++ |+.++||.+|-+....+- ..+..+|..+|..|+..|.
T Consensus 496 F~k~~hPkl~pv~s~~~GIflAG~aqgPkdI-------~~siaqa~aAA~kA~~~l~ 545 (622)
T COG1148 496 FLKEAHPKLRPVDSNRDGIFLAGAAQGPKDI-------ADSIAQAKAAAAKAAQLLG 545 (622)
T ss_pred ccccCCCCcccccccCCcEEEeecccCCccH-------HHHHHHhHHHHHHHHHHhh
Confidence 66554 5555 588999999966653331 2345555555544444443
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.4e-16 Score=152.12 Aligned_cols=249 Identities=20% Similarity=0.312 Sum_probs=130.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccc------cCCCC-----CCCCCCCCCCccccC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKG------YLFPL-----DKKPARLPGFHTCVG 119 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~------~~~~~-----~~~~~~~~~~~~~~~ 119 (489)
.+|+++||.||++|+.|..|.+.+ ..++..+|+.+...|+.-++..+ ++.+. ...+..+..+-...+
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~ 79 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHG 79 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcC
Confidence 479999999999999999999986 45899999998876664333221 11110 000111100000000
Q ss_pred C-----------CCCCC---ChhHHH-HCCcEEEeCCcEEEEeCCC------CEEEeC----CCeEEeeCcEEecCCCCC
Q 011267 120 S-----------GGERQ---TPEWYK-EKGIEMIYQDPVTSIDIEK------QTLITN----SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 ~-----------~~~~~---~~~~~~-~~~i~~~~~~~V~~id~~~------~~v~~~----~g~~i~yd~lvlATG~~~ 174 (489)
. ..... ...|.. +.+-.+..+.+|++|++.. .+|.+. ++..+.+++||+|||..|
T Consensus 80 rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P 159 (341)
T PF13434_consen 80 RLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQP 159 (341)
T ss_dssp -HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE
T ss_pred ChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCC
Confidence 0 00000 012222 2343477788999998754 366662 456899999999999888
Q ss_pred CCCCCCCCC-C-CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchh------
Q 011267 175 SRFPEKIGG-Y-LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ------ 244 (489)
Q Consensus 175 ~~~p~~~g~-~-~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~------ 244 (489)
. +|..-.. . .+.+....++.. ........++|+|||||.+|.|++..|.+.+. +|+++.|+..+.+
T Consensus 160 ~-iP~~~~~~~~~~~v~Hss~~~~---~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f 235 (341)
T PF13434_consen 160 R-IPEWFQDLPGSPRVFHSSEYLS---RIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPF 235 (341)
T ss_dssp ----GGGGGGTT-TTEEEGGGHHH---HHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CC
T ss_pred C-CCcchhhcCCCCCEEEehHhhh---ccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccc
Confidence 6 4533221 1 144554433322 11124578999999999999999999998875 7999998854322
Q ss_pred --hhhCHHH-------------------------------HHHHHHH-----H-HhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 245 --RLFTPSL-------------------------------AQRYEQL-----Y-QQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 245 --~~~~~~~-------------------------------~~~l~~~-----l-~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
..|+|+. .+.+.+. + .+..+.++. +++|+.++..+++.+
T Consensus 236 ~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~-~~~v~~~~~~~~~~~- 313 (341)
T PF13434_consen 236 VNEIFSPEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLP-NTEVTSAEQDGDGGV- 313 (341)
T ss_dssp HHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEET-TEEEEEEEEES-SSE-
T ss_pred hhhhcCchhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeC-CCEEEEEEECCCCEE-
Confidence 1233332 2222111 1 223478888 999999988765444
Q ss_pred EEEeCC---C--cEEEcCEEEEccCCC
Q 011267 286 AVKLED---G--STIDADTIVIGIGAK 307 (489)
Q Consensus 286 ~v~~~~---g--~~i~aD~vi~a~G~~ 307 (489)
.+.+.+ + .++++|.||+|||++
T Consensus 314 ~l~~~~~~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 314 RLTLRHRQTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp EEEEEETTT--EEEEEESEEEE---EE
T ss_pred EEEEEECCCCCeEEEecCEEEEcCCcc
Confidence 355543 2 468999999999974
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-14 Score=137.69 Aligned_cols=292 Identities=18% Similarity=0.246 Sum_probs=176.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccc------C----CCCC-CCCC-------
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY------L----FPLD-KKPA------- 109 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~------~----~~~~-~~~~------- 109 (489)
++..+|++.||-||+-|+.|..|.+.+. .++..+|+.+.+-|+.-++-.+- + ..-+ ..+.
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~--~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~ 79 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSG--LKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLH 79 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccC--cceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHH
Confidence 4567899999999999999999998863 47999999998777643332211 0 0000 0000
Q ss_pred ---CCCCCcccc----CCCCCCCChhHHHHCCcEEEeCCcEE---EEeCCCC---EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 110 ---RLPGFHTCV----GSGGERQTPEWYKEKGIEMIYQDPVT---SIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 110 ---~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~V~---~id~~~~---~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++-.|-... .+..+...-.|....--.++.+++|+ .+|.+.. .+.+.++.++.+..||+++|.+|..
T Consensus 80 ~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 80 EHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred HcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCC
Confidence 011110000 00001111234444446678888898 4444433 3566778899999999999999974
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCcchhh-------
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLLQR------- 245 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~l~~------- 245 (489)
++......-+.++... + ....+..+...++|.|||+|.+|.|+-..|... ..++.++.|+..+++.
T Consensus 160 P~~f~~l~~~~vfHss--~-~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~ 236 (436)
T COG3486 160 PPCFRSLIGERVFHSS--E-YLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGL 236 (436)
T ss_pred ChHHhCcCccceeehH--H-HHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhh
Confidence 4432222122344321 1 111122233445599999999999999988643 3357888888654331
Q ss_pred -hhCHHHHHH-------------------------------HHHHHH------hcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 246 -LFTPSLAQR-------------------------------YEQLYQ------QNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 246 -~~~~~~~~~-------------------------------l~~~l~------~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
.|.|+..++ +..+.+ +..+.++. +++|+.++..++|++ .+
T Consensus 237 e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~-~~ev~~~~~~G~g~~-~l 314 (436)
T COG3486 237 EYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLS-LSEVQSVEPAGDGRY-RL 314 (436)
T ss_pred hhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeecc-ccceeeeecCCCceE-EE
Confidence 122222221 111111 24578888 999999998777753 44
Q ss_pred EeC-----CCcEEEcCEEEEccCCCCCCc-hhhhcC--Cee-cCCcEEeCCCCCCC-----CCCeEEeccccc
Q 011267 288 KLE-----DGSTIDADTIVIGIGAKPTVS-PFERVG--LNS-SVGGIQVDGQFRTR-----MPGIFAIGDVAA 346 (489)
Q Consensus 288 ~~~-----~g~~i~aD~vi~a~G~~p~~~-~~~~~g--l~~-~~g~i~vd~~~~t~-----~~~Iya~GD~a~ 346 (489)
.+. ..++++.|.||+|||++...+ |++.+. +.. ++|...|+.+++.. .-.||+.|=+..
T Consensus 315 ~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~h 387 (436)
T COG3486 315 TLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELH 387 (436)
T ss_pred EEeeccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEeccccc
Confidence 442 225789999999999985554 666654 233 45778999876652 236999986654
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-15 Score=148.95 Aligned_cols=290 Identities=15% Similarity=0.193 Sum_probs=158.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
.+..++|+||||||||++||.+|. +.|+ +|+|+|+.+.+.. +.. +-.+++... +..+ ...+
T Consensus 36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~g~---~VtlfEk~p~pgG----LvR-~GVaPdh~~--~k~v--------~~~f 97 (506)
T PTZ00188 36 EAKPFKVGIIGAGPSALYCCKHLLKHERV---KVDIFEKLPNPYG----LIR-YGVAPDHIH--VKNT--------YKTF 97 (506)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhcCC---eEEEEecCCCCcc----EEE-EeCCCCCcc--HHHH--------HHHH
Confidence 345678999999999999999876 4555 7999999876421 110 111111100 0000 0111
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCC--------CC-CCC----CCceEeecC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPE--------KI-GGY----LPGVHYIRD 193 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~--------~~-g~~----~~gv~~~~~ 193 (489)
...+...++++..+.++- ..++.++=. -.||.+|+|||+.+..+|. +. |.+ ++|++..++
T Consensus 98 ~~~~~~~~v~f~gnv~VG------~Dvt~eeL~-~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~d 170 (506)
T PTZ00188 98 DPVFLSPNYRFFGNVHVG------VDLKMEELR-NHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARD 170 (506)
T ss_pred HHHHhhCCeEEEeeeEec------CccCHHHHH-hcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehhe
Confidence 122344567766443221 122222112 3799999999998654331 00 332 457654433
Q ss_pred H-----HHHH-----HHHHh---hcCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEccC
Q 011267 194 V-----ADAD-----ALISS---LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPE 239 (489)
Q Consensus 194 ~-----~~~~-----~~~~~---~~~~~~vvViG~G~~g~e~A~~l~--------------------~~g~-~V~lv~~~ 239 (489)
+ .+.+ ..... +...++++|||.|++++++|..|. +... +|+++-|+
T Consensus 171 fV~WYNg~p~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRR 250 (506)
T PTZ00188 171 LIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRR 250 (506)
T ss_pred EEEeecCCCCccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEec
Confidence 2 1111 11111 124578999999999999999753 2233 57787776
Q ss_pred Ccchh----------------------hhh------CH-----H--------HHHHHHHHHH----------hcCcEEEE
Q 011267 240 NHLLQ----------------------RLF------TP-----S--------LAQRYEQLYQ----------QNGVKFVK 268 (489)
Q Consensus 240 ~~~l~----------------------~~~------~~-----~--------~~~~l~~~l~----------~~Gv~~~~ 268 (489)
...-. .-+ +. . ..+.+.+..+ .+-+.|++
T Consensus 251 Gp~qaaFT~kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F 330 (506)
T PTZ00188 251 GFWQSSFTNAELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIF 330 (506)
T ss_pred CHHHhCCCHHHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEc
Confidence 21100 000 00 0 1112222221 13366777
Q ss_pred cCceEEEEEeCCCCcEEEEEeC-----------CC--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCC--
Q 011267 269 VGASIKNLEAGSDGRVAAVKLE-----------DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-- 333 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~-----------~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-- 333 (489)
..+.++|.. +++++.++++. .| ++++||+|+-++|++.. + +..+ ..++ .+. +...++
T Consensus 331 -~~sP~ei~~-~~~~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~-p-~~g~--pFd~-~~~-n~~grv~~ 402 (506)
T PTZ00188 331 -YFEIRQIRP-IDGAMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKS-N-FAEN--LYNQ-SVQ-MFKEDIGQ 402 (506)
T ss_pred -cCCceEEEC-CCCcEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCC-C-CCCC--Cccc-cCC-CCCCcccC
Confidence 788888874 34677777776 23 36999999999999864 2 2222 2221 121 112222
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
..|++|++|-+-++|....|. ....|...+..+...+
T Consensus 403 ~~~g~Y~~GWiKrGP~GvIgt-----n~~da~~t~~~v~~d~ 439 (506)
T PTZ00188 403 HKFAIFKAGWFDKGPKGNIAS-----QILNSKNSTHLVLNFL 439 (506)
T ss_pred CCCCcEEeeecCcCCCceecc-----CcccHHHHHHHHHHHH
Confidence 369999999999988766543 2233555555444443
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=148.87 Aligned_cols=157 Identities=16% Similarity=0.158 Sum_probs=113.6
Q ss_pred EEECCCHHHHHHH-HHHH----hCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 211 VVVGGGYIGMEVA-AAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 211 vViG~G~~g~e~A-~~l~----~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.|++.+.+|+|.+ ..+. +.|.+|+++...+..++. .++.+.+.+.+++.|+++++ ++.|.+++.. ++.+.
T Consensus 219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG---~rL~~aL~~~l~~~Gv~I~~-g~~V~~v~~~-~~~V~ 293 (422)
T PRK05329 219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPG---LRLQNALRRAFERLGGRIMP-GDEVLGAEFE-GGRVT 293 (422)
T ss_pred EEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCch---HHHHHHHHHHHHhCCCEEEe-CCEEEEEEEe-CCEEE
Confidence 6788999999999 5554 579999999998888774 37888999999999999999 9999999854 45555
Q ss_pred EEEeCCCc--EEEcCEEEEccCCCCCCch-----------------------------------hhhcCCeecCCcEEeC
Q 011267 286 AVKLEDGS--TIDADTIVIGIGAKPTVSP-----------------------------------FERVGLNSSVGGIQVD 328 (489)
Q Consensus 286 ~v~~~~g~--~i~aD~vi~a~G~~p~~~~-----------------------------------~~~~gl~~~~g~i~vd 328 (489)
.+...+|+ .+.+|.||+|+|..+...+ +.+.|+.+|+....+|
T Consensus 294 ~v~~~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p~~ 373 (422)
T PRK05329 294 AVWTRNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRPLD 373 (422)
T ss_pred EEEeeCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCccc
Confidence 55555553 5899999999998765432 1334555554445555
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
...++..+|+||+|++...+++....... -.|...|-.|++++.
T Consensus 374 ~~g~~~~~nl~a~G~vl~g~d~~~~~~g~----Gva~~ta~~a~~~~~ 417 (422)
T PRK05329 374 SQGGPVIENLYAAGAVLGGYDPIREGCGS----GVALATALHAAEQIA 417 (422)
T ss_pred CCCCeeccceEEeeehhcCCchHHhCCCc----hhHHHHHHHHHHHHH
Confidence 66666789999999999988764322111 124555566666655
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.4e-15 Score=151.83 Aligned_cols=184 Identities=18% Similarity=0.217 Sum_probs=113.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCC-CCCccccCCCCCCCCCCCCCCccc-----
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YER-PALTKGYLFPLDKKPARLPGFHTC----- 117 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~----y~~-~~l~~~~~~~~~~~~~~~~~~~~~----- 117 (489)
.++.+||+|||||++||++|++|++.|.+ +++++|++.... +++ +.+ ..........++.++..
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~--~~~i~Ek~~~~Gg~W~~~ry~~l----~~~~p~~~~~~~~~p~~~~~~~ 78 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVP--DFVIFEKRDDVGGTWRYNRYPGL----RLDSPKWLLGFPFLPFRWDEAF 78 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCC--cEEEEEccCCcCCcchhccCCce----EECCchheeccCCCccCCcccC
Confidence 46789999999999999999999999974 299999997543 111 111 11111111111111110
Q ss_pred -cCCCCCCCChhHHHHCCcE--EEeCCcEEEEeCCC----CEEEeCCCeE--EeeCcEEecCCCC--CCCCCCCCCCCCC
Q 011267 118 -VGSGGERQTPEWYKEKGIE--MIYQDPVTSIDIEK----QTLITNSGKL--LKYGSLIVATGCT--ASRFPEKIGGYLP 186 (489)
Q Consensus 118 -~~~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~----~~v~~~~g~~--i~yd~lvlATG~~--~~~~p~~~g~~~~ 186 (489)
..........++++++++. +..+..|..++.+. .+|+++++.. +.+|+||+|||.. |. .|.++|.+..
T Consensus 79 ~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~-iP~~~G~~~f 157 (443)
T COG2072 79 APFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPY-IPDFAGLDEF 157 (443)
T ss_pred CCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCC-CCCCCCccCC
Confidence 0011122334566666554 33444455555433 3778887765 4599999999963 33 4444443322
Q ss_pred ceEeecCHHHHHHHHHh-hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 187 GVHYIRDVADADALISS-LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~-~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
....++ +.+..+. ...+|+|+|||+|.+|++++..|.+.|.+|+++.|++..
T Consensus 158 ~g~~~H----S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~ 210 (443)
T COG2072 158 KGRILH----SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH 210 (443)
T ss_pred CceEEc----hhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence 212222 2222211 247899999999999999999999999999999988643
|
|
| >KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-15 Score=138.86 Aligned_cols=156 Identities=20% Similarity=0.271 Sum_probs=98.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..+.++|.|||+||||+++|.+|.++. +...|+|+|+.+.+ |- |..-.+.|..+..... ...+.
T Consensus 17 qs~~p~vcIVGsGPAGfYtA~~LLk~~-~~~~Vdi~Ek~PvP-FG---LvRyGVAPDHpEvKnv-----------intFt 80 (468)
T KOG1800|consen 17 QSSTPRVCIVGSGPAGFYTAQHLLKRH-PNAHVDIFEKLPVP-FG---LVRYGVAPDHPEVKNV-----------INTFT 80 (468)
T ss_pred ccCCceEEEECCCchHHHHHHHHHhcC-CCCeeEeeecCCcc-cc---eeeeccCCCCcchhhH-----------HHHHH
Confidence 455679999999999999999999973 36799999999864 21 1110112222111111 12234
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH-------HHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-------DAL 200 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~-------~~~ 200 (489)
..+++.+..|..+.+| +..+.+.. -+-.||.+|||+|+.-.+...+||.+++++...+.+-.. +++
T Consensus 81 ~~aE~~rfsf~gNv~v------G~dvsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l 153 (468)
T KOG1800|consen 81 KTAEHERFSFFGNVKV------GRDVSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL 153 (468)
T ss_pred HHhhccceEEEeccee------cccccHHH-HhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCccccc
Confidence 4455666667665443 11122211 123799999999997655567789888998876543211 111
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHH
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAV 227 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~ 227 (489)
--.+ .+.+++|||-|.+++++|..|.
T Consensus 154 e~dl-s~~~vvIvG~GNVAlDvARiLl 179 (468)
T KOG1800|consen 154 EPDL-SGRKVVIVGNGNVALDVARILL 179 (468)
T ss_pred Cccc-ccceEEEEccCchhhhhhhhhh
Confidence 1112 2679999999999999999875
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=143.32 Aligned_cols=244 Identities=18% Similarity=0.238 Sum_probs=143.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCCC--------CCccccCCCCCCCCCCCCCCccc
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YERP--------ALTKGYLFPLDKKPARLPGFHTC 117 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~~--------~l~~~~~~~~~~~~~~~~~~~~~ 117 (489)
.++.++|+|||||+|||++|+.|++.|. +++++|+.+... |..+ .+.+.+.....+....++.++..
T Consensus 3 ~~~~~~vaIIGAG~sGL~~ar~l~~~g~---~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~ 79 (448)
T KOG1399|consen 3 MMMSKDVAVIGAGPAGLAAARELLREGH---EVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFP 79 (448)
T ss_pred cCCCCceEEECcchHHHHHHHHHHHCCC---CceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCc
Confidence 3567899999999999999999999987 799999988754 1111 11111111112222222222221
Q ss_pred cCC--------CCCCCChhHHHHCCc--EEEeCCcEEEEeCCC---CEEEeCCC----eEEeeCcEEecCCCCC-CCCCC
Q 011267 118 VGS--------GGERQTPEWYKEKGI--EMIYQDPVTSIDIEK---QTLITNSG----KLLKYGSLIVATGCTA-SRFPE 179 (489)
Q Consensus 118 ~~~--------~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~---~~v~~~~g----~~i~yd~lvlATG~~~-~~~p~ 179 (489)
... .....+.+++++.++ .+..+++|..++... -.|.+.+. .+.-||.|++|||... ..+|.
T Consensus 80 ~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~ 159 (448)
T KOG1399|consen 80 ERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQ 159 (448)
T ss_pred ccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCc
Confidence 110 111122344455565 477778888888765 25655443 4678999999999873 22555
Q ss_pred CCCC---CCCceEeecCHHHHHHH-HHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 180 KIGG---YLPGVHYIRDVADADAL-ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 180 ~~g~---~~~gv~~~~~~~~~~~~-~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
+++. ..+|- .++ +... ......+++|+|||.|.+|+|++..+.....+|.+..+ . + ......
T Consensus 160 ~~g~~~~~f~G~-~iH----S~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~-~-------~~~~~~ 225 (448)
T KOG1399|consen 160 IPGPGIESFKGK-IIH----SHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S-P-------KVHVEP 225 (448)
T ss_pred CCCCchhhcCCc-cee----hhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-c-c-------cccccc
Confidence 4442 22331 111 1111 11234679999999999999999999888878877654 1 0 000000
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
...+ ..++-.+. . |+.+. +++ .+.++++....+|.+|.|||+.-..++++..+
T Consensus 226 ~~~~-~~~~~~~~--~-i~~~~--e~~---~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~ 278 (448)
T KOG1399|consen 226 PEIL-GENLWQVP--S-IKSFT--EDG---SVFEKGGPVERVDRIIFCTGYKYKFPFLETLG 278 (448)
T ss_pred ccee-ecceEEcc--c-ccccc--Ccc---eEEEcCceeEEeeeEEEeeeeEeecceeccCC
Confidence 0000 11222222 2 44443 222 35567777889999999999987767766654
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-11 Score=121.03 Aligned_cols=291 Identities=20% Similarity=0.289 Sum_probs=162.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCccccC-CCCCCCCCCCCC----Ccccc-C-
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYL-FPLDKKPARLPG----FHTCV-G- 119 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l~~~~~-~~~~~~~~~~~~----~~~~~-~- 119 (489)
+++|+|||+|++|++.|.+|.+.-.+...|.|+|+.+.. +|+.- .+...+ .+........|. |..+. +
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~-~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~ 79 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTE-EPEHLLNVPAARMSAFAPDIPQDFVRWLQKQ 79 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCC-CchhhhccccccccccCCCCchHHHHHHHhc
Confidence 478999999999999999999986545569999998764 45421 110011 000000000011 00000 0
Q ss_pred -----------CCCCCC-------------ChhHHHHCC---cEEEeCCcEEEEeCC----CCEEEeCCCeEEeeCcEEe
Q 011267 120 -----------SGGERQ-------------TPEWYKEKG---IEMIYQDPVTSIDIE----KQTLITNSGKLLKYGSLIV 168 (489)
Q Consensus 120 -----------~~~~~~-------------~~~~~~~~~---i~~~~~~~V~~id~~----~~~v~~~~g~~i~yd~lvl 168 (489)
.+.... +..+.++.. +.++. ++++.+.+. ...+...+|....+|-+|+
T Consensus 80 ~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~-~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vl 158 (474)
T COG4529 80 LQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR-EEATSVRQDTNAGGYLVTTADGPSEIADIIVL 158 (474)
T ss_pred ccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe-eeeecceeccCCceEEEecCCCCeeeeeEEEE
Confidence 000000 011112222 44443 455555554 2366778888889999999
Q ss_pred cCCCCCCCCCCCCCCCCCce-EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchhh
Q 011267 169 ATGCTASRFPEKIGGYLPGV-HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQR 245 (489)
Q Consensus 169 ATG~~~~~~p~~~g~~~~gv-~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~~ 245 (489)
|||..+...+. -..++++- .+..+...+.. +..+....+|+|+|+|++.++.-..|.++|. ++|++.|+. +.++
T Consensus 159 atgh~~~~~~~-~~~~~~~~~~~ia~~~~~~~-ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG-l~~~ 235 (474)
T COG4529 159 ATGHSAPPADP-AARDLKGSPRLIADPYPANA-LDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG-LVPR 235 (474)
T ss_pred eccCCCCCcch-hhhccCCCcceeccccCCcc-cccccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccc-cccC
Confidence 99987543222 11122221 13333333322 2234456679999999999999999999886 588888772 1000
Q ss_pred --------------------------------------------------------------------------------
Q 011267 246 -------------------------------------------------------------------------------- 245 (489)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (489)
T Consensus 236 ~h~~~~~~p~~d~~~~p~~s~~~L~~~vR~~l~e~e~~g~~w~~v~D~lR~~~~~~wq~l~~~er~rf~rH~~~~~dvHr 315 (474)
T COG4529 236 PHIPVPYEPLGDFLSDPANSALSLLSIVRLLLREAEEAGQDWRDVVDGLRPQGQWIWQNLPAVERRRFERHLRPIWDVHR 315 (474)
T ss_pred CCCCCCccccccccchhhhhhhhHHHHHHHHHHHHHHhCCCHHHHHHhhhhhhhHHHHhCCHHHHHHHHHhcccHHHHHH
Confidence
Q ss_pred -hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEccCCCCCCc-----hhh--
Q 011267 246 -LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVS-----PFE-- 314 (489)
Q Consensus 246 -~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~aD~vi~a~G~~p~~~-----~~~-- 314 (489)
-+.+.+...+.+.+.+.-++++- .++..|.....+.....+... .+++++|.||.|+|..+... ++.
T Consensus 316 ~R~a~~v~~~~~~~~a~G~~~l~a--g~~~~i~~~~eg~~v~~r~rg~~~~~~l~~~~VIn~~g~~~~~~~~s~~~L~sl 393 (474)
T COG4529 316 FRLAPAVQAAVPQLLAEGLLELVA--GRVVSIDREGEGRAVTYRERGKQHEEELDVDAVINTTGPAHDNSLSSDPFLRSL 393 (474)
T ss_pred hhhhHHHHhhhhHHhhcchhheec--CceeecccccCCceEEeeccccCccceeeeeEEEEcCCcCcCCCccchHHHHHH
Confidence 01122222222222222244554 566677655555332333222 24789999999999876542 333
Q ss_pred -hcCCee-c--CCcEEeCCCCCC------CCCCeEEeccccccC
Q 011267 315 -RVGLNS-S--VGGIQVDGQFRT------RMPGIFAIGDVAAFP 348 (489)
Q Consensus 315 -~~gl~~-~--~g~i~vd~~~~t------~~~~Iya~GD~a~~~ 348 (489)
+-|+.. + ..|+.|+++.+. ..++.||+|..+...
T Consensus 394 ~~~Gl~rpd~~~lGl~v~~~~~v~~~~g~~~~~~fa~Gplt~G~ 437 (474)
T COG4529 394 GENGLARPDPPGLGLDVSDDSEVLGEDGERVTGLFAAGPLTRGT 437 (474)
T ss_pred HhCCccccCCCCCceeeCCCCcccCCCCccccCceeeccccCCc
Confidence 334443 2 367889887764 468999999888754
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.2e-13 Score=102.03 Aligned_cols=80 Identities=39% Similarity=0.656 Sum_probs=74.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
+++|||||++|+|+|..|.++|.+|+++++.+.+++ .+++++.+.+.+.+++.||++++ ++.+++++.++++ +. |+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~-~~~~~~~~~~~~~l~~~gV~v~~-~~~v~~i~~~~~~-~~-V~ 76 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP-GFDPDAAKILEEYLRKRGVEVHT-NTKVKEIEKDGDG-VE-VT 76 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST-TSSHHHHHHHHHHHHHTTEEEEE-SEEEEEEEEETTS-EE-EE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh-hcCHHHHHHHHHHHHHCCCEEEe-CCEEEEEEEeCCE-EE-EE
Confidence 589999999999999999999999999999999994 69999999999999999999999 9999999987766 66 88
Q ss_pred eCCC
Q 011267 289 LEDG 292 (489)
Q Consensus 289 ~~~g 292 (489)
++||
T Consensus 77 ~~~g 80 (80)
T PF00070_consen 77 LEDG 80 (80)
T ss_dssp EETS
T ss_pred EecC
Confidence 8886
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.1e-09 Score=109.10 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=95.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCCccccCCCC--CCCCCCCCCCccc-------
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPALTKGYLFPL--DKKPARLPGFHTC------- 117 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l~~~~~~~~--~~~~~~~~~~~~~------- 117 (489)
+++|+|||||++|+++|.+|.+.+. ..+|+|+|+.... +|....-+..++... ...+...+.+..+
T Consensus 1 m~~IAIIGgGp~Gl~~a~~L~~~~~-~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~ 79 (534)
T PRK09897 1 MKKIAIVGAGPTGIYTFFSLLQQQT-PLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDS 79 (534)
T ss_pred CCeEEEECCcHHHHHHHHHHHhcCC-CCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHH
Confidence 4689999999999999999998764 5689999996543 244211111011000 0000000000000
Q ss_pred ------------cC-CCCCC-CC----hh-------HHHHCC--cEEEeCCcEEEEeCCCC--EEEeCC-CeEEeeCcEE
Q 011267 118 ------------VG-SGGER-QT----PE-------WYKEKG--IEMIYQDPVTSIDIEKQ--TLITNS-GKLLKYGSLI 167 (489)
Q Consensus 118 ------------~~-~~~~~-~~----~~-------~~~~~~--i~~~~~~~V~~id~~~~--~v~~~~-g~~i~yd~lv 167 (489)
.. ...-+ .. .+ .+...| +.++.+++|++++.... .+++.+ +..+.+|+||
T Consensus 80 ~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~VV 159 (534)
T PRK09897 80 HLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAV 159 (534)
T ss_pred HHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCEEE
Confidence 00 00000 01 11 112334 67777789999987654 455544 4678999999
Q ss_pred ecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC
Q 011267 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW 229 (489)
Q Consensus 168 lATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~ 229 (489)
+|||..+...+ .+ .+ .++.+..+.. ..... .+.+|+|+|.|+++++++..|...
T Consensus 160 LAtGh~~p~~~--~~--~~--~yi~~pw~~~-~~~~i-~~~~V~I~GtGLt~iD~v~~Lt~~ 213 (534)
T PRK09897 160 IATGHVWPDEE--EA--TR--TYFPSPWSGL-MEAKV-DACNVGIMGTSLSGLDAAMAVAIQ 213 (534)
T ss_pred ECCCCCCCCCC--hh--hc--cccCCCCcch-hhcCC-CCCeEEEECCCHHHHHHHHHHHhc
Confidence 99997542211 11 11 2333333322 11222 368999999999999999988755
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.9e-11 Score=112.69 Aligned_cols=123 Identities=25% Similarity=0.276 Sum_probs=77.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcc-----ccCCCCC--CC-------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK-----GYLFPLD--KK------- 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-------y~~~~l~~-----~~~~~~~--~~------- 107 (489)
|+.+||+|||||+||++||..+.+.|. +|+|||+.+... --|+.+.+ .|+.... ..
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~G~---~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~ 77 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKAGR---RVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALA 77 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhcCC---EEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHH
Confidence 467899999999999999999999986 799999987532 11111111 0110000 00
Q ss_pred ---CCCCC------CCcccc---CCC---------CCCCChhHHHHCCcEEEeCCcEEEEeCC--CCEEEeCCCeEEeeC
Q 011267 108 ---PARLP------GFHTCV---GSG---------GERQTPEWYKEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYG 164 (489)
Q Consensus 108 ---~~~~~------~~~~~~---~~~---------~~~~~~~~~~~~~i~~~~~~~V~~id~~--~~~v~~~~g~~i~yd 164 (489)
+.++. +..... |+. ..+-...-+++.|++++++++|.+++.+ .+.+.+.+|.++.+|
T Consensus 78 ~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d 157 (408)
T COG2081 78 RFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCD 157 (408)
T ss_pred hCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEcc
Confidence 00000 000000 000 0011123346779999999999999987 478899999899999
Q ss_pred cEEecCCCCC
Q 011267 165 SLIVATGCTA 174 (489)
Q Consensus 165 ~lvlATG~~~ 174 (489)
.||+|||...
T Consensus 158 ~lilAtGG~S 167 (408)
T COG2081 158 SLILATGGKS 167 (408)
T ss_pred EEEEecCCcC
Confidence 9999999543
|
|
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.3e-09 Score=104.68 Aligned_cols=125 Identities=20% Similarity=0.311 Sum_probs=87.8
Q ss_pred hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCC-CCCchhhhc----
Q 011267 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAK-PTVSPFERV---- 316 (489)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~-p~~~~~~~~---- 316 (489)
|...+..+.+.+.+.+++.|++++. ++.|.++... ++++..|.+.++ ..+.+|.+|+|+|.. .+ .++++.
T Consensus 258 PSv~G~RL~~aL~~~~~~~Gg~il~-g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~-gL~a~l~~i~ 334 (419)
T TIGR03378 258 PSLLGIRLEEALKHRFEQLGGVMLP-GDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSN-GLVAEFDKIY 334 (419)
T ss_pred CCCcHHHHHHHHHHHHHHCCCEEEE-CcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCH-HHHhhcCcee
Confidence 3445668888899999999999999 9999998754 566767776666 479999999999988 43 443332
Q ss_pred ----CCee--------------------cCCcEEeCCCCCC-----CCCCeEEeccccccCCccCCcccccccHHHHHHH
Q 011267 317 ----GLNS--------------------SVGGIQVDGQFRT-----RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 367 (489)
Q Consensus 317 ----gl~~--------------------~~g~i~vd~~~~t-----~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~ 367 (489)
+++. ..=||.+|+++|. ..+|+||+|-+..++++..-.... -.|...
T Consensus 335 Epif~L~v~~~~~r~~W~~~~ff~~~p~~~~GV~~d~~lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~----GVai~T 410 (419)
T TIGR03378 335 EPIFGLDVLQLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGGYDPIFEGCGS----GVAVST 410 (419)
T ss_pred eeccCCCcCCCcchhhhcchhhcCCChhhhcCceEccccCccCCCcccccceEechhhcCCChHhcCCCc----hhHHHH
Confidence 1211 1126899999984 389999999999987765322110 125555
Q ss_pred HHHHHHHH
Q 011267 368 AQHCIKAL 375 (489)
Q Consensus 368 g~~~a~~l 375 (489)
|-.||+.|
T Consensus 411 a~~aa~~i 418 (419)
T TIGR03378 411 ALHAAEQI 418 (419)
T ss_pred HHHHHHhh
Confidence 66666554
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.7e-10 Score=113.64 Aligned_cols=56 Identities=30% Similarity=0.453 Sum_probs=44.4
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
-|||.||.+.||++|++||+|.|+.......++++ ..+.-.+...|..+|+++.+.
T Consensus 341 mGGI~vD~~GrTsi~gLYAiGEvA~TGlHGANRLA-SNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 341 MGGIAVDANGRTSIPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred cccEEECCCCcccCcccEEeeeecccccccchhhh-hhhHHHHHHHHHHHHHHhhcc
Confidence 48999999999999999999999986544334433 345567888899999999864
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=100.34 Aligned_cols=106 Identities=19% Similarity=0.285 Sum_probs=77.1
Q ss_pred hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEccCCCCCCchhh-------
Q 011267 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVSPFE------- 314 (489)
Q Consensus 244 ~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~aD~vi~a~G~~p~~~~~~------- 314 (489)
|..++-.+.+.+.+.+++.|.-+.. +..|.+.+- .+++|+.|.+.+... +.+|..|+|+|.--...+..
T Consensus 253 PSllGiRl~~~L~~~f~~~Gg~~m~-Gd~V~~a~~-~~~~v~~i~trn~~diP~~a~~~VLAsGsffskGLvae~d~I~E 330 (421)
T COG3075 253 PSLLGIRLHNQLQRQFEQLGGLWMP-GDEVKKATC-KGGRVTEIYTRNHADIPLRADFYVLASGSFFSKGLVAERDKIYE 330 (421)
T ss_pred cchhhhhHHHHHHHHHHHcCceEec-CCceeeeee-eCCeEEEEEecccccCCCChhHeeeeccccccccchhhhhhhhc
Confidence 3445667888999999999999999 999999874 578888999888754 67999999999643322110
Q ss_pred ---hcCCe------------------ecCCcEEeCCCCCCC-----CCCeEEeccccccCCcc
Q 011267 315 ---RVGLN------------------SSVGGIQVDGQFRTR-----MPGIFAIGDVAAFPLKM 351 (489)
Q Consensus 315 ---~~gl~------------------~~~g~i~vd~~~~t~-----~~~Iya~GD~a~~~~~~ 351 (489)
.+.+. ...=||.+|+++|.+ ..|+||+|.+...+++.
T Consensus 331 PIf~ldi~~~~dR~~W~~~~ffapqp~~qfGV~tD~~lrp~~~g~~~eNL~aiGavlgGfdpi 393 (421)
T COG3075 331 PIFDLDILQTADRAEWYHSDFFAPQPYQQFGVTTDDTLRPSRGGQTIENLYAIGAVLGGFDPI 393 (421)
T ss_pred chhhcccccCcchhhhhhccccCCChhHHhCcccccccCccccchHHHHHHHHHHHhcCCcHH
Confidence 01110 011268889998863 57999999999887765
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.9e-09 Score=105.90 Aligned_cols=215 Identities=20% Similarity=0.242 Sum_probs=120.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCC-CCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD-KKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
++++||||||||+.|+++|+.|.+... +.+|+|+|++.....+...-..+.....- ..+..+..-....+ .....
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p-~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g---~~~~~ 76 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEP-DLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAG---NINEF 76 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCC-CceEEEEEccCccccccccCcccceeccccCCCcchhhHHHHHH---HHHHH
Confidence 467899999999999999999999974 67999999998876654443222221110 00100000000000 00113
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCC-CCCC----CCCCCCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-FPEK----IGGYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~-~p~~----~g~~~~gv~~~~~~~~~~~~~~ 202 (489)
++.+++++.+. ...++++|+|-.... +... ....++.+.. .+.+++++
T Consensus 77 ~~~kq~~~~f~-----------------------~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~----ld~~~i~~ 129 (429)
T COG0579 77 AICKQLGIPFI-----------------------NCGKLSVATGEEEVERLEKLYERGKANGVFDLEI----LDKEEIKE 129 (429)
T ss_pred HHHHHhCCccc-----------------------ccCeEEEEEChHHHHHHHHHHHHHhhCCCcceee----cCHHHHHh
Confidence 33444442222 226888888854211 0000 0001221111 23444444
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
....-..- ++| -.++ ...... -...+...+.+.++++|+++.+ |++|+.|+..++|
T Consensus 130 ~eP~l~~~-~~a------------------al~~-p~~giV---~~~~~t~~l~e~a~~~g~~i~l-n~eV~~i~~~~dg 185 (429)
T COG0579 130 LEPLLNEG-AVA------------------ALLV-PSGGIV---DPGELTRALAEEAQANGVELRL-NTEVTGIEKQSDG 185 (429)
T ss_pred hCcccccc-cee------------------eEEc-CCCceE---cHHHHHHHHHHHHHHcCCEEEe-cCeeeEEEEeCCc
Confidence 32110000 000 1111 111111 1224566777888889999999 9999999987665
Q ss_pred cEEEEEeCCCcE-EEcCEEEEccCCCCCCchhhhcCCee
Q 011267 283 RVAAVKLEDGST-IDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 283 ~v~~v~~~~g~~-i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
+..+.+.+|++ ++|+.||.|.|.-.. .+++.+|+..
T Consensus 186 -~~~~~~~~g~~~~~ak~Vin~AGl~Ad-~la~~~g~~~ 222 (429)
T COG0579 186 -VFVLNTSNGEETLEAKFVINAAGLYAD-PLAQMAGIPE 222 (429)
T ss_pred -eEEEEecCCcEEEEeeEEEECCchhHH-HHHHHhCCCc
Confidence 55678888876 999999999998876 7777777765
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7e-09 Score=107.07 Aligned_cols=56 Identities=25% Similarity=0.396 Sum_probs=39.1
Q ss_pred cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 321 ~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..|||.||.+.||++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 309 t~GGi~vd~~~~t~IpGLyAaGE~a~~G~hG~nrl~-gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 309 TIGGISVDTFYRTGIKNLYAIGEAASNGFHGANRLA-SNSLLECIVSGLEVARTISR 364 (466)
T ss_pred cCCCEEECCCCcccCCCEEECccccccCCCCCCcch-hHHHHHHHHHHHHHHHHHhh
Confidence 358999999999999999999999742111112222 23455677778888887753
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.9e-09 Score=114.15 Aligned_cols=103 Identities=20% Similarity=0.296 Sum_probs=79.4
Q ss_pred cCCCcEEEECCCH--HHHHHHHHHHhCCCcEEEEccCCcchhhhh-------------CHHHHHHHHHHHHhcCcEEEEc
Q 011267 205 EKAKKVVVVGGGY--IGMEVAAAAVGWKLDTTIIFPENHLLQRLF-------------TPSLAQRYEQLYQQNGVKFVKV 269 (489)
Q Consensus 205 ~~~~~vvViG~G~--~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~-------------~~~~~~~l~~~l~~~Gv~~~~~ 269 (489)
...+++.|+|+++ ++.+++..+...+.+++++.+..+++.... ...+.+.+.+.+++.|+++++
T Consensus 155 ~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L~~~~~~~Gv~i~~- 233 (574)
T PRK12842 155 PPLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARLAKSALDLGIPILT- 233 (574)
T ss_pred CCcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHHHHHHHhCCCEEEe-
Confidence 4567888999998 899999999999988887766655554211 235667788888899999999
Q ss_pred CceEEEEEeCCCCcEEEEEeCC--Cc-EEEcC-EEEEccCCCCC
Q 011267 270 GASIKNLEAGSDGRVAAVKLED--GS-TIDAD-TIVIGIGAKPT 309 (489)
Q Consensus 270 ~~~v~~i~~~~~~~v~~v~~~~--g~-~i~aD-~vi~a~G~~p~ 309 (489)
++.|+++..+ ++++.+|...+ ++ .+.++ .||+|+|..++
T Consensus 234 ~~~v~~l~~~-~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 276 (574)
T PRK12842 234 GTPARELLTE-GGRVVGARVIDAGGERRITARRGVVLACGGFSH 276 (574)
T ss_pred CCEEEEEEee-CCEEEEEEEEcCCceEEEEeCCEEEEcCCCccc
Confidence 9999999854 57777777644 33 47786 79999998775
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-08 Score=102.09 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=39.5
Q ss_pred cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 321 ~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..|||.||.+.||++|++||+|.++.......++.. -.+...+...|+.|++++..
T Consensus 330 t~GGi~vd~~~~t~i~gLYAaGE~a~~g~hG~nrl~-gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 330 FMGGIKVDLNSKTSMKNLYAFGEVSCTGVHGANRLA-SNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred ecCCEEECCCccccCCCeEecccccccCCCccccch-hHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999742111111111 23556688888988888753
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-09 Score=108.27 Aligned_cols=121 Identities=27% Similarity=0.359 Sum_probs=60.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------CCCCCCcc------ccCCC--CCCCCCC--C---
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------YERPALTK------GYLFP--LDKKPAR--L--- 111 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-------y~~~~l~~------~~~~~--~~~~~~~--~--- 111 (489)
|||+|||||+|||.||..+++.|. +|+|+|+++... --|+.++. .|... ....... +
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~---~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f 77 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGA---RVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF 77 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT-----EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC
Confidence 699999999999999999999876 799999987642 01111111 11110 0000000 0
Q ss_pred -----------CCCccccCCCC-----CCCC-------hhHHHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCc
Q 011267 112 -----------PGFHTCVGSGG-----ERQT-------PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGS 165 (489)
Q Consensus 112 -----------~~~~~~~~~~~-----~~~~-------~~~~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~ 165 (489)
.+.+....... ..+. ...+++.+++++.+++|.+|..+. ..|.++++.++.+|+
T Consensus 78 ~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~ 157 (409)
T PF03486_consen 78 SPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADA 157 (409)
T ss_dssp -HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESE
T ss_pred CHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCE
Confidence 00000000000 0011 122356799999999999997643 457777888999999
Q ss_pred EEecCCCCCC
Q 011267 166 LIVATGCTAS 175 (489)
Q Consensus 166 lvlATG~~~~ 175 (489)
||||||+...
T Consensus 158 vILAtGG~S~ 167 (409)
T PF03486_consen 158 VILATGGKSY 167 (409)
T ss_dssp EEE----SSS
T ss_pred EEEecCCCCc
Confidence 9999998753
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.5e-08 Score=102.80 Aligned_cols=37 Identities=32% Similarity=0.405 Sum_probs=32.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+||||||+|.||++||.++++.|. +|+|||+...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~---~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGR---RVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCC---eEEEEEccCC
Confidence 456899999999999999999999875 7999999764
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.1e-07 Score=99.01 Aligned_cols=55 Identities=31% Similarity=0.413 Sum_probs=39.1
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.|||.||.+.||++|++||+|+|+.......++.. -.+...|...|+.+++++..
T Consensus 333 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 333 CGGISVDDHGRTTVPGLYAIGEVACTGLHGANRLA-SNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred cCCEEECCCCcccCCCEEECccccccccCcccccc-hhHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999742111111111 23556688888888888764
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >PF14759 Reductase_C: Reductase C-terminal; PDB: 3FG2_P 3LXD_A 2YVG_A 2GR1_A 2GQW_A 2GR3_A 2YVF_A 1F3P_A 2GR0_A 2GR2_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.3e-08 Score=76.27 Aligned_cols=77 Identities=23% Similarity=0.390 Sum_probs=62.4
Q ss_pred ceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhcCCCCChh
Q 011267 388 YFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKA 464 (489)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (489)
||||+||+.. +|++|.... +.+..++.+ .++..+|+++|+++|++. +|.+.++..++++++.+..++++
T Consensus 1 ~FWSdQ~~~~-------iq~~G~~~~~~~~v~rg~~~~~~~~~~y~~~g~lva~~~-vn~~~~~~~~rrli~~~~~~~~~ 72 (85)
T PF14759_consen 1 WFWSDQYGVR-------IQIAGLPGGADEVVVRGDPESGKFVAFYLRDGRLVAAVS-VNRPRDLRAARRLIAAGARVDPA 72 (85)
T ss_dssp EEEEEETTEE-------EEEEE-STTSSEEEEEEETTTTEEEEEEEETTEEEEEEE-ES-HHHHHHHHHHHHTT-B--HH
T ss_pred CeecccCCCe-------EEEEECCCCCCEEEEEccCCCCcEEEEEEcCCEEEEEEe-cCCHHHHHHHHHHHHCCCCcCHH
Confidence 7999999975 999997643 677888876 789999999999999995 89999999999999999999998
Q ss_pred hhcCCCcH
Q 011267 465 KLQQASSV 472 (489)
Q Consensus 465 ~~~~~~~~ 472 (489)
.+.++..-
T Consensus 73 ~l~d~~~~ 80 (85)
T PF14759_consen 73 RLADPSVD 80 (85)
T ss_dssp HHHSTTSH
T ss_pred HhcCCCCC
Confidence 88776543
|
... |
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=98.91 Aligned_cols=67 Identities=30% Similarity=0.489 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+..+...+.+.+++.|+++++ +++|+++..+ ++.+.+|.+.+|+ +.+|.||+|+|.... .++..++.
T Consensus 146 ~~~l~~~l~~~~~~~Gv~i~~-~~~V~~i~~~-~~~v~gv~~~~g~-i~ad~vV~a~G~~s~-~l~~~~~~ 212 (358)
T PF01266_consen 146 PRRLIQALAAEAQRAGVEIRT-GTEVTSIDVD-GGRVTGVRTSDGE-IRADRVVLAAGAWSP-QLLPLLGL 212 (358)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE-SEEEEEEEEE-TTEEEEEEETTEE-EEECEEEE--GGGHH-HHHHTTTT
T ss_pred ccchhhhhHHHHHHhhhhccc-cccccchhhc-ccccccccccccc-cccceeEecccccce-eeeecccc
Confidence 457788888889999999999 9999999864 5667679999997 999999999998764 45666654
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=92.08 Aligned_cols=111 Identities=19% Similarity=0.319 Sum_probs=88.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------------------------------------- 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-------------------------------------------- 242 (489)
...|+|||||+.|+.+|..+.+.|.+|.++++.+.+
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~ 82 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPE 82 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHH
Confidence 356999999999999999999999999999977322
Q ss_pred -----------------hhhhhC-----HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 243 -----------------LQRLFT-----PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 243 -----------------l~~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
..+.|+ ..+.+.+...+++.||++++ +++|.+++.++ ....+.+.+|+++.||.+
T Consensus 83 d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~-~~~v~~v~~~~--~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 83 DFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRT-RSRVSSVEKDD--SGFRLDTSSGETVKCDSL 159 (408)
T ss_pred HHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEe-cceEEeEEecC--ceEEEEcCCCCEEEccEE
Confidence 001121 35667788899999999999 99999998654 334688899989999999
Q ss_pred EEccC--CCCCC-------chhhhcCCee
Q 011267 301 VIGIG--AKPTV-------SPFERVGLNS 320 (489)
Q Consensus 301 i~a~G--~~p~~-------~~~~~~gl~~ 320 (489)
|+|+| ..|.+ +++++.|++.
T Consensus 160 ilAtGG~S~P~lGstg~gy~iA~~~G~~I 188 (408)
T COG2081 160 ILATGGKSWPKLGSTGFGYPIARQFGHTI 188 (408)
T ss_pred EEecCCcCCCCCCCCchhhHHHHHcCCcc
Confidence 99999 45643 3678888765
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.2e-08 Score=101.84 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=32.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+||||||||.||++||.++++.+. ..+|+|||+...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~-g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANP-HLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 4799999999999999999998763 458999999754
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-08 Score=101.51 Aligned_cols=38 Identities=24% Similarity=0.251 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||+|.||++||.++++.+. ..+|+|||+...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~-g~~V~lleK~~~ 40 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANP-NLKIALISKVYP 40 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCC-CCcEEEEEccCC
Confidence 35799999999999999999998863 458999999753
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=99.87 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||+|.||++||.++++.+. ..+|+|||+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNP-ALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCC-CCeEEEEeCCCC
Confidence 45799999999999999999998753 458999999864
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=103.32 Aligned_cols=38 Identities=29% Similarity=0.274 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.++++.+. ..+|+|||+...
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~-g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDP-SLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcC-CCcEEEEeccCC
Confidence 45799999999999999999998863 458999999754
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=6.4e-08 Score=98.02 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
...+.+.+.+.+++.|+++++ ++.|.++...+ +.+ .|.+.+| ++.||.||+|+|.... .+++.+|+
T Consensus 148 ~~~l~~aL~~~~~~~Gv~i~~-~~~V~~i~~~~-~~~-~V~~~~g-~i~ad~vV~A~G~~s~-~l~~~~g~ 213 (393)
T PRK11728 148 YRAVAEAMAELIQARGGEIRL-GAEVTALDEHA-NGV-VVRTTQG-EYEARTLINCAGLMSD-RLAKMAGL 213 (393)
T ss_pred HHHHHHHHHHHHHhCCCEEEc-CCEEEEEEecC-CeE-EEEECCC-EEEeCEEEECCCcchH-HHHHHhCC
Confidence 356777888888999999999 99999997543 333 5677776 7999999999998764 55555554
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-07 Score=98.08 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=38.1
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
-|||.||.+.||++|++||+|+|+.......++.. -.+..++...|+.++..+.
T Consensus 347 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanRL~-gnsl~e~lvfG~~a~~~~~ 400 (553)
T PRK07395 347 MGGVVTDLNNQTSIPGLYAVGETASTGVHGANRLA-SNSLLECLVFAAQLAQLEL 400 (553)
T ss_pred CCCeeECCCCcccCCCEEECccccccCCCcccchH-HHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999753222222222 2345567777888877764
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=90.27 Aligned_cols=99 Identities=22% Similarity=0.314 Sum_probs=79.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc---ch--------hh----hhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------QR----LFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~l--------~~----~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
+++|||+|+.|+++|..|.+.|.+|+++++.+. +. +. ..+.++...+.+.+++.|+++++ ++|
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~--~~v 79 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIY--EEV 79 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEE--EEE
Confidence 589999999999999999999999999997641 11 11 12357788888999999999998 688
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++++..+ + ...+.+.+++++.+|.+|+|+|..|+..
T Consensus 80 ~~v~~~~-~-~~~v~~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 80 IKVDLSD-R-PFKVKTGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred EEEEecC-C-eeEEEeCCCCEEEeCEEEECCCCCcccC
Confidence 8887542 2 2356777888999999999999988643
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-06 Score=90.77 Aligned_cols=35 Identities=26% Similarity=0.445 Sum_probs=31.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||+|.||++||.++++.|. +|+|||+.+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~G~---~V~lveK~~ 38 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASAGF---KVAVISKVF 38 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHCCC---cEEEEEccC
Confidence 46799999999999999999999875 799999875
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.6e-08 Score=106.64 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=77.0
Q ss_pred CCCcEEEECCCHHHHHHHHH-------HHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 206 KAKKVVVVGGGYIGMEVAAA-------AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~-------l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
.++.++++|++.++++.+.. +.+++.+|+++...+..+. .++..+...+.+.+++.|+++++ ++.++++..
T Consensus 159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~g~~~~~~L~~~~~~~gv~v~~-~t~v~~l~~ 236 (557)
T PRK07843 159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLL-GMGQALAAGLRIGLQRAGVPVLL-NTPLTDLYV 236 (557)
T ss_pred ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcc-cCcHHHHHHHHHHHHcCCCEEEe-CCEEEEEEE
Confidence 35678899999999998865 5566667776554443332 25667788888889999999999 999999985
Q ss_pred CCCCcEEEEEeC-CCc--EEEcC-EEEEccC-CCCCCchhhhc
Q 011267 279 GSDGRVAAVKLE-DGS--TIDAD-TIVIGIG-AKPTVSPFERV 316 (489)
Q Consensus 279 ~~~~~v~~v~~~-~g~--~i~aD-~vi~a~G-~~p~~~~~~~~ 316 (489)
+ ++++.+|... +++ ++.++ .||+|+| +.+|.++++..
T Consensus 237 ~-~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~~~n~~m~~~~ 278 (557)
T PRK07843 237 E-DGRVTGVHAAESGEPQLIRARRGVILASGGFEHNEQMRAKY 278 (557)
T ss_pred e-CCEEEEEEEEeCCcEEEEEeceeEEEccCCcCcCHHHHHHh
Confidence 4 5677777664 443 47885 5888666 45555555443
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.9e-07 Score=99.09 Aligned_cols=102 Identities=21% Similarity=0.267 Sum_probs=68.6
Q ss_pred CCCcEEEECCCHHH-HHHHHHHHhCCCcEEEEccCCcchhh-------------hhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 206 KAKKVVVVGGGYIG-MEVAAAAVGWKLDTTIIFPENHLLQR-------------LFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 206 ~~~~vvViG~G~~g-~e~A~~l~~~g~~V~lv~~~~~~l~~-------------~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
...++.++|++.++ .+++..+...+..+.+..+..+++.. ..+..+...+.+.+++.|+++++ ++
T Consensus 160 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~L~~~a~~~Gv~i~~-~t 238 (581)
T PRK06134 160 PLRETSFMGMPIMAGADLAAFLNPTRSFRAFLHVARRFARHLIDLARHGRGMHLVNGNALVARLLKSAEDLGVRIWE-SA 238 (581)
T ss_pred ccccccccccccccHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHhCCCEEEc-CC
Confidence 34566678877665 67777776665554443322221111 12345667788889999999999 99
Q ss_pred eEEEEEeCCCCcEEEEEeC--CCc-EEEc-CEEEEccCCCCC
Q 011267 272 SIKNLEAGSDGRVAAVKLE--DGS-TIDA-DTIVIGIGAKPT 309 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~--~g~-~i~a-D~vi~a~G~~p~ 309 (489)
.|+++..+ ++++.+|... ++. ++.+ +.||+|+|...+
T Consensus 239 ~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 239 PARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred EEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 99998754 5777776653 333 5788 999999998765
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.6e-07 Score=99.65 Aligned_cols=33 Identities=33% Similarity=0.357 Sum_probs=30.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~---~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGL---NTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 79999999999999999999876 7999998753
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.8e-08 Score=101.84 Aligned_cols=55 Identities=24% Similarity=0.401 Sum_probs=39.3
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
-|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 332 ~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 332 MGGVKTNLDGETSIPGLYAIGEVACTGVHGANRLA-SNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred cCCEEECCCCcccCCCeEEcccccccccCCCcccc-hHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999852111111111 23566788888888888753
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-06 Score=87.64 Aligned_cols=56 Identities=29% Similarity=0.394 Sum_probs=39.7
Q ss_pred cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 321 SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 321 ~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..|||.||.+.||++|++||+|+|+.......++.. -.+...|...|+.|++++..
T Consensus 352 t~GGi~vd~~~~t~I~GLyAaGE~a~~g~hGanrl~-gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 352 TCGGVMVDLHGRTDLDGLYAIGEVSYTGLHGANRMA-SNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred ecCCeeECCCCccccCCEEecccccccccCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999742111111211 23556678888888888764
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-07 Score=95.32 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=73.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---------------Cccc------------cCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---------------LTKG------------YLF 102 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~---------------l~~~------------~~~ 102 (489)
+++||+|||||+||+++|..|++.|. +|+|+|+.+...-.... +... +..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGI---AVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC
Confidence 46799999999999999999999987 69999987642110000 0000 000
Q ss_pred CCCCCCCCCC--C-----Ccccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecC
Q 011267 103 PLDKKPARLP--G-----FHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVAT 170 (489)
Q Consensus 103 ~~~~~~~~~~--~-----~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlAT 170 (489)
........++ . ++... .......+.+.+.+.+++++.+++|+.++.... .+.+.+|.++.+|.||.|+
T Consensus 80 ~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 80 PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECc
Confidence 0000000000 0 00000 000000112223456899999999999876543 5667788889999999999
Q ss_pred CCCCC
Q 011267 171 GCTAS 175 (489)
Q Consensus 171 G~~~~ 175 (489)
|..+.
T Consensus 160 G~~s~ 164 (375)
T PRK06847 160 GLYSK 164 (375)
T ss_pred CCCcc
Confidence 98654
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.3e-07 Score=98.47 Aligned_cols=39 Identities=31% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.++++.|..+.+|+|||+...
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~ 42 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQP 42 (577)
T ss_pred eecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccC
Confidence 457999999999999999999998721247999998754
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.6e-07 Score=100.79 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=32.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.++++.|. +|+||++...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~---~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGA---NVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccc
Confidence 45799999999999999999999876 7999998763
|
|
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-06 Score=90.41 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHhCCCcE------EEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC-CC--CcEEE
Q 011267 216 GYIGMEVAAAAVGWKLDT------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG-SD--GRVAA 286 (489)
Q Consensus 216 G~~g~e~A~~l~~~g~~V------~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~--~~v~~ 286 (489)
=.++.|+...+.+.-..+ .-+.+. +.- + .+.+...+.+.++++||+|++ +++|+++..+ ++ +++++
T Consensus 191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft-~yn--q-yeSLV~PL~~~Le~~GV~f~~-~t~VtdL~~~~d~~~~~Vtg 265 (576)
T PRK13977 191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFT-KYN--Q-YESLVLPLIKYLEDHGVDFQY-GTKVTDIDFDITGGKKTATA 265 (576)
T ss_pred hhHHHHHHHHHHHHHHhhccCCccccccCC-CCC--c-hhHHHHHHHHHHHhCCCEEEe-CCEEEEEEEcCCCCceEEEE
Confidence 357888888886652222 111111 111 1 367888899999999999999 9999999864 23 56888
Q ss_pred EEeC-CCc-----EEEcCEEEEccCCCC
Q 011267 287 VKLE-DGS-----TIDADTIVIGIGAKP 308 (489)
Q Consensus 287 v~~~-~g~-----~i~aD~vi~a~G~~p 308 (489)
|... +|+ ..+.|.||+++|.-.
T Consensus 266 I~~~~~~~~~~I~l~~~DlVivTnGs~t 293 (576)
T PRK13977 266 IHLTRNGKEETIDLTEDDLVFVTNGSIT 293 (576)
T ss_pred EEEEeCCceeEEEecCCCEEEEeCCcCc
Confidence 8775 232 356899999999654
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.5e-07 Score=96.08 Aligned_cols=124 Identities=18% Similarity=0.263 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CccccC--CCC-CCCCCCCCCCc--------
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPL-DKKPARLPGFH-------- 115 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~-l~~~~~--~~~-~~~~~~~~~~~-------- 115 (489)
....+||+|||||+||+++|..|++.|+ +|+|||+.+..++.+.. .+...+ ... +.....++...
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl---~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~ 101 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGL---SVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKK 101 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCC---eEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCC
Confidence 3456899999999999999999999877 79999997654332110 000000 000 00000000000
Q ss_pred cccCCCC----CCCC----hhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 116 TCVGSGG----ERQT----PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 116 ~~~~~~~----~~~~----~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
....... ...+ .+.+.+.+++++. .+|.+++.... .|++++|.++.++.||.|+|....
T Consensus 102 ~~~~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~-~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 102 KDLDRPYGRVNRKKLKSKMLERCIANGVQFHQ-AKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred ccccCcceeEEHHHHHHHHHHHHhhcCCEEEe-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0000000 0011 1122456888874 68888876543 677888988999999999998754
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=5e-07 Score=92.10 Aligned_cols=64 Identities=17% Similarity=0.351 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+...+.+.+++.|++++. ++.|++++.. ++.+ .+.+.+ +.++.+|.||+|+|.... .++..++
T Consensus 198 ~~~~~l~~~a~~~G~~i~~-~~~V~~i~~~-~~~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s~-~l~~~~~ 266 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRY-GQEVTSIKTD-GGGV-VLTVQPSAEHPSRTLEFDGVVVCAGVGSR-ALAAMLG 266 (410)
T ss_pred HHHHHHHHHHHhCCCEEEc-CCEEEEEEEe-CCEE-EEEEEcCCCCccceEecCEEEECCCcChH-HHHHHhC
Confidence 5566777888999999999 9999999854 3333 233332 237999999999998754 4444433
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=1.4e-07 Score=96.22 Aligned_cols=123 Identities=17% Similarity=0.280 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCcc---ccCCCCC--CCCC--CCC------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---GYLFPLD--KKPA--RLP------ 112 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~~---~~~~~~~--~~~~--~~~------ 112 (489)
+.++||+||||||||++||+.|++.|. +|+|||+.+....... .++. ..+.+.. ..+. ...
T Consensus 3 ~~~~DViIVGgGpAG~~aA~~LA~~G~---~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~ 79 (429)
T PRK10015 3 DDKFDAIVVGAGVAGSVAALVMARAGL---DVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred ccccCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEE
Confidence 456899999999999999999999987 6999999875432110 0000 0000000 0000 000
Q ss_pred -------CCcccc-------C-CCC--CCCChhH----HHHCCcEEEeCCcEEEEeCCCCEE--EeCCCeEEeeCcEEec
Q 011267 113 -------GFHTCV-------G-SGG--ERQTPEW----YKEKGIEMIYQDPVTSIDIEKQTL--ITNSGKLLKYGSLIVA 169 (489)
Q Consensus 113 -------~~~~~~-------~-~~~--~~~~~~~----~~~~~i~~~~~~~V~~id~~~~~v--~~~~g~~i~yd~lvlA 169 (489)
...... . ... +..+..| .++.|++++.+++|+.+..++..+ ...++.++.++.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~A 159 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILA 159 (429)
T ss_pred EeCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEc
Confidence 000000 0 000 0111222 345699999998999887654433 2334567999999999
Q ss_pred CCCCC
Q 011267 170 TGCTA 174 (489)
Q Consensus 170 TG~~~ 174 (489)
+|...
T Consensus 160 dG~~s 164 (429)
T PRK10015 160 DGVNS 164 (429)
T ss_pred cCcch
Confidence 99754
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.3e-07 Score=93.97 Aligned_cols=123 Identities=22% Similarity=0.314 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---CccccC---CCCCCC--CCCCCCCcc-cc-
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---LTKGYL---FPLDKK--PARLPGFHT-CV- 118 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~---l~~~~~---~~~~~~--~~~~~~~~~-~~- 118 (489)
++++|||||||||||++||+.|++.|+ +|+|+|+.+...+.... ++...+ .+.... ...+.+... ..
T Consensus 1 ~~~~DVvIVGaGPAGs~aA~~la~~G~---~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~ 77 (396)
T COG0644 1 MMEYDVVIVGAGPAGSSAARRLAKAGL---DVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPG 77 (396)
T ss_pred CceeeEEEECCchHHHHHHHHHHHcCC---eEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecC
Confidence 367999999999999999999999986 79999998776543211 111000 000000 000000000 00
Q ss_pred ---------CCCC---CCCChhHH----HHCCcEEEeCCcEEEEeCCCC--EE-EeCCCeEEeeCcEEecCCCCC
Q 011267 119 ---------GSGG---ERQTPEWY----KEKGIEMIYQDPVTSIDIEKQ--TL-ITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 119 ---------~~~~---~~~~~~~~----~~~~i~~~~~~~V~~id~~~~--~v-~~~~g~~i~yd~lvlATG~~~ 174 (489)
+... ...+.+|+ ++.|.+++.++++..+..++. .+ ...++.++.++.+|.|+|...
T Consensus 78 ~~~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 78 EKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred CceEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0000 11222333 457999999999998876553 22 223336799999999999764
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=98.59 E-value=9.7e-07 Score=89.87 Aligned_cols=65 Identities=18% Similarity=0.334 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+...+.+.+++.|++++. ++.|++++..+++.+..|++.+| ++.++.||+|+|.... .+.+..+
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~-~~~V~~i~~~~~~~~~~v~t~~g-~i~a~~vVvaagg~~~-~l~~~~g 248 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQ-NCEVTGFIRRDGGRVIGVETTRG-FIGAKKVGVAVAGHSS-VVAAMAG 248 (407)
T ss_pred HHHHHHHHHHHHCCCEEEe-CCEEEEEEEcCCCcEEEEEeCCc-eEECCEEEECCChhhH-HHHHHcC
Confidence 4555677888899999999 99999997544566667888777 6999999888776543 3444333
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.3e-07 Score=89.80 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=68.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCccc---cC----------------CCCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTKG---YL----------------FPLDKKPAR 110 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--~l~~~---~~----------------~~~~~~~~~ 110 (489)
+||+|||||+||+++|..|++.|. +|+|+|+.+....... .+... .+ .........
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~---~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGL---RVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVE 77 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEE
Confidence 589999999999999999999886 7999999875422100 00000 00 000000000
Q ss_pred CCC---Cc-cccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeC-CCeEEeeCcEEecCCCCC
Q 011267 111 LPG---FH-TCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 111 ~~~---~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~-~g~~i~yd~lvlATG~~~ 174 (489)
.+. .. ..........+.+...+.+++++.+++|+.+..+.. .+.+. ++.++.+|.+|+|+|...
T Consensus 78 ~~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 78 IPIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred eccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000 00 000000001112233456899999999988765444 34434 346799999999999764
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.9e-07 Score=95.66 Aligned_cols=58 Identities=17% Similarity=0.243 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+..+...+.+.+++ |++++. ++.|+++...+ +.+ .|.+.+|+.+.+|.||+|+|....
T Consensus 407 p~~l~~aL~~~a~~-Gv~i~~-~~~V~~i~~~~-~~~-~v~t~~g~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 407 PAELCRALLALAGQ-QLTIHF-GHEVARLERED-DGW-QLDFAGGTLASAPVVVLANGHDAA 464 (662)
T ss_pred HHHHHHHHHHhccc-CcEEEe-CCEeeEEEEeC-CEE-EEEECCCcEEECCEEEECCCCCcc
Confidence 34677778788888 999999 99999998543 444 377788877899999999998754
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.3e-07 Score=95.05 Aligned_cols=123 Identities=21% Similarity=0.290 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--CCC-CCcc-------------ccCCCCCCC-----
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--ERP-ALTK-------------GYLFPLDKK----- 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~~~-~l~~-------------~~~~~~~~~----- 107 (489)
|..+||+||||||+|+++|..|++.|. +|+|||+.+...+ .|. .++. .+.......
T Consensus 1 ~~~~dVlIVGaGp~Gl~lA~~La~~G~---~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~ 77 (488)
T PRK06834 1 MTEHAVVIAGGGPTGLMLAGELALAGV---DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGF 77 (488)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCcccccee
Confidence 356899999999999999999999987 7999998765321 111 1110 000000000
Q ss_pred ---CCCCCCCccccCCCCC--------CCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 108 ---PARLPGFHTCVGSGGE--------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 108 ---~~~~~~~~~~~~~~~~--------~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
..+....... ..... ..+.+.+++.+++++.+++++++..+.. .+++.+|.++.+|+||.|.|..+
T Consensus 78 ~~~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 78 AATRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred eeEecccccCCCC-CCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCC
Confidence 0000000000 00000 0011334566899999999999876554 45666777899999999999876
Q ss_pred C
Q 011267 175 S 175 (489)
Q Consensus 175 ~ 175 (489)
.
T Consensus 157 ~ 157 (488)
T PRK06834 157 L 157 (488)
T ss_pred C
Confidence 4
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3e-07 Score=93.97 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCc----cccCCCC--CCCC-CCCC------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALT----KGYLFPL--DKKP-ARLP------ 112 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~----~~~~~~~--~~~~-~~~~------ 112 (489)
+.++||+||||||||++||..|++.|. +|+|||+.+....... .++ ..+ .+. ...+ .+..
T Consensus 3 ~~~~DViIVGaGpAG~~aA~~La~~G~---~V~llEr~~~~g~k~~~gg~l~~~~~e~l-~~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 3 EDIFDAIIVGAGLAGSVAALVLAREGA---QVLVIERGNSAGAKNVTGGRLYAHSLEHI-IPGFADSAPVERLITHEKLA 78 (428)
T ss_pred cccCcEEEECcCHHHHHHHHHHHhCCC---eEEEEEcCCCCCCcccccceechhhHHHH-hhhhhhcCcccceeeeeeEE
Confidence 456999999999999999999999987 6999999865432110 000 000 000 0000 0000
Q ss_pred -----C---Cccc-----c--CCCC---CCCChhH----HHHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEe
Q 011267 113 -----G---FHTC-----V--GSGG---ERQTPEW----YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIV 168 (489)
Q Consensus 113 -----~---~~~~-----~--~~~~---~~~~~~~----~~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvl 168 (489)
+ +... . .... ...+..| .++.|++++.+++|+++..+... ....++.++.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~ 158 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVIL 158 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEE
Confidence 0 0000 0 0000 0011222 24579999999999998654433 2345677899999999
Q ss_pred cCCCCC
Q 011267 169 ATGCTA 174 (489)
Q Consensus 169 ATG~~~ 174 (489)
|+|...
T Consensus 159 A~G~~s 164 (428)
T PRK10157 159 ADGVNS 164 (428)
T ss_pred EeCCCH
Confidence 999754
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-06 Score=88.50 Aligned_cols=54 Identities=26% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
-|||.+|.+.||++|++||+|+|+.......++.. -.+...+...|+.++..+.
T Consensus 377 ~GGi~vD~~~~t~IpGLyAaGE~a~~G~hGanrl~-gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 377 CGGVRTGLQGETNVQGLYAAGEVACTGLHGANRLA-SNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCCeeECCCCceecCCEEecccccccCCCCCCcch-hhHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999842111111211 3355667778888887765
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.4e-07 Score=95.20 Aligned_cols=98 Identities=15% Similarity=0.305 Sum_probs=72.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||++|+.+|..|++.|. +|+|+++.+... + .... .+ .....+.
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l------~-----~~~~---~~-----------~~~~~~~ 207 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNKLGS---KVTVLDAASTIL------P-----REEP---SV-----------AALAKQY 207 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCccC------C-----CCCH---HH-----------HHHHHHH
Confidence 35689999999999999999999875 799999876431 0 0000 00 0123466
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEE-EeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTL-ITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v-~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++++++|++++.+...+ ...++.++.||.+++|+|..|.
T Consensus 208 l~~~GI~i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 208 MEEDGITFLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHcCCEEEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 788999999999999998765433 3345778999999999999886
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=91.87 Aligned_cols=55 Identities=31% Similarity=0.441 Sum_probs=37.6
Q ss_pred CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 322 ~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
-|||.||.+.+|++|++||+|+|+.......++.. -.+...+...|+.+++++..
T Consensus 341 ~GGi~vd~~~~t~I~GLyAaGE~a~~G~hGanrl~-gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 341 MGGIAVDADGRSSLPGLWAAGEVASTGLHGANRLA-SNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred cCCEEECCCCccccCCEEecccccccCCCcccchH-HHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999742111112221 22445567778877777653
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=9.1e-07 Score=91.28 Aligned_cols=66 Identities=14% Similarity=0.258 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHh----cC--cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 250 SLAQRYEQLYQQ----NG--VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 250 ~~~~~l~~~l~~----~G--v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.+...+.+.+++ .| +++++ ++.|++++..+ +....|.+.+| ++.||.||+|+|.... .+++.+|+.
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~-~t~V~~I~~~~-~~~~~V~T~~G-~i~A~~VVvaAG~~S~-~La~~~Gi~ 283 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINL-NTEVLNIERSN-DSLYKIHTNRG-EIRARFVVVSACGYSL-LFAQKMGYG 283 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEe-CCEEEEEEecC-CCeEEEEECCC-EEEeCEEEECcChhHH-HHHHHhCCC
Confidence 567777788888 77 88999 99999998643 34456777777 6999999999998765 667777653
|
|
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.7e-07 Score=96.47 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=29.0
Q ss_pred cEEEEcCchHHHHHHHHHH----HcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFV----EHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~----~~g~~~~~V~li~~~~~ 88 (489)
||||||||.||++||.+++ +.|. +|+||++...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~---~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGL---KIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCC---eEEEEEccCC
Confidence 7999999999999999998 5554 7999999764
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.5e-07 Score=87.45 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=68.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC-------------CC-CC-CCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-------------KP-AR-LPG 113 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~-------------~~-~~-~~~ 113 (489)
...+||+|||||+||++||++|++.|+ +|+|+|+.+...... ...+.+++... .+ .. ..+
T Consensus 23 ~~~~DVvIVGgGpAGl~AA~~la~~G~---~V~liEk~~~~Ggg~--~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g 97 (257)
T PRK04176 23 YLEVDVAIVGAGPSGLTAAYYLAKAGL---KVAVFERKLSFGGGM--WGGGMLFNKIVVQEEADEILDEFGIRYKEVEDG 97 (257)
T ss_pred hccCCEEEECccHHHHHHHHHHHhCCC---eEEEEecCCCCCCcc--ccCccccccccchHHHHHHHHHCCCCceeecCc
Confidence 346899999999999999999999887 699999987543210 00011111000 00 00 000
Q ss_pred CccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC-EE---EeC-----------CCeEEeeCcEEecCCCCC
Q 011267 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-TL---ITN-----------SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~-~v---~~~-----------~g~~i~yd~lvlATG~~~ 174 (489)
............+.....+.|++++.+++|.++..+.. .+ .+. +...+.++.+|+|||...
T Consensus 98 ~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 98 LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 00000000001112233567999999988888764322 22 111 224689999999999754
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.1e-07 Score=99.63 Aligned_cols=56 Identities=29% Similarity=0.421 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|..+ ++++..|++.+|+++.+|.||++++.
T Consensus 219 ~~l~~al~~~~~~~G~~i~~-~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~ 274 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRL-NAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL 274 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEE-CCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence 46778888889999999999 9999999854 46667889999989999999999885
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.8e-06 Score=88.09 Aligned_cols=64 Identities=30% Similarity=0.493 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+...+.+.+++.|++++. ++.|++++.. ++.+..|++.++ ++.+|.||+|+|.... .++...+
T Consensus 202 ~~~~~l~~~~~~~G~~i~~-~~~V~~i~~~-~~~~~~v~t~~~-~~~a~~VV~a~G~~~~-~l~~~~g 265 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRF-NTPVDGLLVE-GGRITGVQTGGG-VITADAYVVALGSYST-ALLKPLG 265 (416)
T ss_pred HHHHHHHHHHHHCCCEEEc-CCEEEEEEec-CCEEEEEEeCCc-EEeCCEEEECCCcchH-HHHHHhC
Confidence 5667777888899999999 9999999854 345555666655 7999999999998654 4444444
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.51 E-value=3.1e-07 Score=95.11 Aligned_cols=98 Identities=19% Similarity=0.326 Sum_probs=72.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||++|+.+|..|++.|. +|+|+++.+... |.+.. .+ .....+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~~~~~l 221 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGS---KVTVIEMLDRIL---PGEDA-----------EV-----------SKVVAKAL 221 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCCCC---CCCCH-----------HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999876421 10000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCC--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g--~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.+... +.+.+| .++.+|.+++|+|..|..
T Consensus 222 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~ 271 (461)
T TIGR01350 222 KKKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNT 271 (461)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccC
Confidence 7889999999999998865543 444566 579999999999998863
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.5e-07 Score=89.99 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=34.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|||||+|||+||++|++.+. +.+|+|+|+++..+
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p-~~~i~lfE~~~r~G 38 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGP-DVEVTLFEADDRVG 38 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCC-CCcEEEEecCCCCC
Confidence 369999999999999999999985 78999999987653
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-06 Score=75.94 Aligned_cols=34 Identities=12% Similarity=0.308 Sum_probs=29.4
Q ss_pred EEEcCchHHHHHHHHHHHcC--CCCCcEEEEcCCCC
Q 011267 55 VIVGGGNAAGYAARTFVEHG--MADGRLCIVSKEAY 88 (489)
Q Consensus 55 vIIGgG~AGl~aA~~L~~~g--~~~~~V~li~~~~~ 88 (489)
+|||+|++|++++.+|.++. .+..+|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999984 34679999999654
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=85.29 Aligned_cols=65 Identities=20% Similarity=0.361 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
..+...+.+.+++.|++++. ++.|+++..+ ++.+ .|.+.++ ++.+|.||+|+|.... .+++.+++
T Consensus 145 ~~~~~~l~~~~~~~g~~~~~-~~~V~~i~~~-~~~~-~v~~~~~-~i~a~~vV~aaG~~~~-~l~~~~g~ 209 (380)
T TIGR01377 145 EKALRALQELAEAHGATVRD-GTKVVEIEPT-ELLV-TVKTTKG-SYQANKLVVTAGAWTS-KLLSPLGI 209 (380)
T ss_pred HHHHHHHHHHHHHcCCEEEC-CCeEEEEEec-CCeE-EEEeCCC-EEEeCEEEEecCcchH-HHhhhccc
Confidence 35667777888889999999 9999999854 3333 4666666 7999999999998653 45555544
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.3e-07 Score=88.92 Aligned_cols=110 Identities=19% Similarity=0.335 Sum_probs=71.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc----------------------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------------------------------------------- 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~---------------------------------------------- 242 (489)
+|+|||||+.|+-+|..+++.|.+|.++++.+++
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d 81 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED 81 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence 5899999999999999999999999999988322
Q ss_pred --------------------hhhh-hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 243 --------------------LQRL-FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 243 --------------------l~~~-~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
.|.. -..++.+.+.+.+++.||++++ +++|.+++.. ++.+..|.+++++++.||.||
T Consensus 82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~-~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vI 159 (409)
T PF03486_consen 82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHF-NTRVKSIEKK-EDGVFGVKTKNGGEYEADAVI 159 (409)
T ss_dssp HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE--S--EEEEEEE-TTEEEEEEETTTEEEEESEEE
T ss_pred HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEe-CCEeeeeeec-CCceeEeeccCcccccCCEEE
Confidence 1110 0134556788888999999999 9999999864 445567888777899999999
Q ss_pred EccCCCCC--C-------chhhhcCCee
Q 011267 302 IGIGAKPT--V-------SPFERVGLNS 320 (489)
Q Consensus 302 ~a~G~~p~--~-------~~~~~~gl~~ 320 (489)
+|+|.... + .+++++|...
T Consensus 160 LAtGG~S~p~~GS~G~gy~~a~~lGh~i 187 (409)
T PF03486_consen 160 LATGGKSYPKTGSDGSGYRIAKKLGHTI 187 (409)
T ss_dssp E----SSSGGGT-SSHHHHHHHHTT--E
T ss_pred EecCCCCccccCCCcHHHHHHHHCCCcE
Confidence 99997643 1 3567777654
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.7e-07 Score=92.73 Aligned_cols=124 Identities=21% Similarity=0.268 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCCC-Ccc---------ccC---CC----------
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERPA-LTK---------GYL---FP---------- 103 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-y~~~~-l~~---------~~~---~~---------- 103 (489)
.+..+||+||||||+|+++|..|++.|. +|+|||+.+... ..+.. +.. +++ ..
T Consensus 2 ~~~~~dVlIVGAGPaGL~lA~~Lar~Gi---~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~ 78 (487)
T PRK07190 2 STQVTDVVIIGAGPVGLMCAYLGQLCGL---NTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSV 78 (487)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHcCC---CEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEE
Confidence 3456899999999999999999999987 699999987531 11100 000 000 00
Q ss_pred --CCCCC-------CCCCCC--c--cccCCC-CCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEE
Q 011267 104 --LDKKP-------ARLPGF--H--TCVGSG-GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (489)
Q Consensus 104 --~~~~~-------~~~~~~--~--~~~~~~-~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lv 167 (489)
..... ..+.+. + ...+.. ....+.+.+.+.|++++.+++|+.+..+.. .+.+.+|+++.+++||
T Consensus 79 ~~~g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vV 158 (487)
T PRK07190 79 WANGKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVI 158 (487)
T ss_pred ecCCceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEE
Confidence 00000 000000 0 000000 000012234567999999999999876543 4566778889999999
Q ss_pred ecCCCCC
Q 011267 168 VATGCTA 174 (489)
Q Consensus 168 lATG~~~ 174 (489)
.|+|...
T Consensus 159 gADG~~S 165 (487)
T PRK07190 159 GADGSRS 165 (487)
T ss_pred ECCCCCH
Confidence 9999865
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.2e-07 Score=85.66 Aligned_cols=120 Identities=18% Similarity=0.215 Sum_probs=69.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCC------CCCCCCCCCccc-cCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLD------KKPARLPGFHTC-VGSGG 122 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~------~~~~~~~~~~~~-~~~~~ 122 (489)
..+||+|||||+||++||+.|++.|. +|+|+|++....... ...+.+++.. ....+..+.+.. .+...
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~---~V~vlEk~~~~Ggg~--~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~ 94 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGL---KVCVLERSLAFGGGS--WGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGY 94 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCccc--cCCCcceecccccchHHHHHHHCCCCeeeccCce
Confidence 46899999999999999999999986 799999987643210 0000000000 000000000000 00000
Q ss_pred --------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--E---EEeC-----------CCeEEeeCcEEecCCCCC
Q 011267 123 --------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--T---LITN-----------SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 123 --------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~---v~~~-----------~g~~i~yd~lvlATG~~~ 174 (489)
...+.+...+.+++++.+++|.++..++. . +.+. +...+.++.+|.|||...
T Consensus 95 ~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a 170 (254)
T TIGR00292 95 VVADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA 170 (254)
T ss_pred EEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence 01111223467999999999988775433 2 2222 234689999999999653
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.8e-06 Score=88.75 Aligned_cols=56 Identities=25% Similarity=0.332 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
..+.+.+.+.+++.|.++++ ++.|++|..++++.+..+++.+|+++.+|.||+++.
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l-~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p 363 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRL-NSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATP 363 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEe-CCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCC
Confidence 45667888888889999999 999999987667777778888998999999999975
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.1e-06 Score=88.71 Aligned_cols=125 Identities=12% Similarity=0.015 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---cC-----CCCCCCCCCCCCC--
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL-----FPLDKKPARLPGF-- 114 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~--l~~~---~~-----~~~~~~~~~~~~~-- 114 (489)
+|+..+|+|||||++|+++|..|++.|+ +|+|+|+.+.....+. . +... .+ .............
T Consensus 3 ~~~~~~ViIVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~ 79 (386)
T PRK07236 3 HMSGPRAVVIGGSLGGLFAALLLRRAGW---DVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIY 79 (386)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEE
Confidence 4677899999999999999999999987 6999999864311110 0 1100 00 0000000000000
Q ss_pred ccccCC-----CC------CCCChhHH-HH-CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 115 HTCVGS-----GG------ERQTPEWY-KE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 115 ~~~~~~-----~~------~~~~~~~~-~~-~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
....+. .. ...+...+ +. .+++++.+++|+++..+.. ++.+.+|+++.+|.||.|-|....
T Consensus 80 ~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~ 155 (386)
T PRK07236 80 LDRDGRVVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRST 155 (386)
T ss_pred EeCCCCEeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCch
Confidence 000000 00 00011111 11 2467889999999976544 567788999999999999997654
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8.7e-07 Score=92.71 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=72.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC--------------CCCccccC-----------C
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER--------------PALTKGYL-----------F 102 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-~~--------------~~l~~~~~-----------~ 102 (489)
|+++||+||||||+|+++|..|+++|. +|+|||+.+...- .+ -.+...+. +
T Consensus 1 ~~~~dVlIVGaGpaGl~~A~~La~~Gi---~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~ 77 (502)
T PRK06184 1 YTTTDVLIVGAGPTGLTLAIELARRGV---SFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIY 77 (502)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEE
Confidence 356899999999999999999999987 6999999764310 00 00000000 0
Q ss_pred CCCCCCC--CCCC-CccccCCC----C-------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEe---CCCeEEee
Q 011267 103 PLDKKPA--RLPG-FHTCVGSG----G-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKY 163 (489)
Q Consensus 103 ~~~~~~~--~~~~-~~~~~~~~----~-------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~---~~g~~i~y 163 (489)
....... .+.. ........ . ...+.+.+.+.+++++.++++++++.+.. ++++ .++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a 157 (502)
T PRK06184 78 RDDGSVAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRA 157 (502)
T ss_pred eCCceEEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEe
Confidence 0000000 0000 00000000 0 00112234456899999999999976544 3444 56678999
Q ss_pred CcEEecCCCCCC
Q 011267 164 GSLIVATGCTAS 175 (489)
Q Consensus 164 d~lvlATG~~~~ 175 (489)
|+||.|+|....
T Consensus 158 ~~vVgADG~~S~ 169 (502)
T PRK06184 158 RYLVGADGGRSF 169 (502)
T ss_pred CEEEECCCCchH
Confidence 999999998753
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.6e-07 Score=90.94 Aligned_cols=124 Identities=19% Similarity=0.245 Sum_probs=72.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCcc---------ccC---------------C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTK---------GYL---------------F 102 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~---------~~~---------------~ 102 (489)
++||+|||||++|+++|..|++.|. +.+|+|+|+.+..... + ..++. +++ .
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~-g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 79 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAP-HLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVIT 79 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCC-CCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEE
Confidence 4799999999999999999999863 3489999997642110 0 00000 000 0
Q ss_pred C-CCCCCCCC--CCCccc--cCCCC---------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcE
Q 011267 103 P-LDKKPARL--PGFHTC--VGSGG---------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSL 166 (489)
Q Consensus 103 ~-~~~~~~~~--~~~~~~--~~~~~---------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~l 166 (489)
. ........ ..+... .+... ...+.+.+.+.+++++.+++|+.++.+.. .+.+.+|.++.+|.|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~v 159 (403)
T PRK07333 80 DSRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLL 159 (403)
T ss_pred eCCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEE
Confidence 0 00000000 000000 00000 00112233456899999999999976554 466678888999999
Q ss_pred EecCCCCCC
Q 011267 167 IVATGCTAS 175 (489)
Q Consensus 167 vlATG~~~~ 175 (489)
|.|+|....
T Consensus 160 I~AdG~~S~ 168 (403)
T PRK07333 160 VAADGARSK 168 (403)
T ss_pred EEcCCCChH
Confidence 999998654
|
|
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2e-06 Score=88.81 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|...+++++++|++.+|+ ++.||.||+++..
T Consensus 213 ~~l~~~l~~~l~~~g~~i~l-~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~ 274 (453)
T TIGR02731 213 ERLCQPIVDYITSRGGEVRL-NSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV 274 (453)
T ss_pred HHHHHHHHHHHHhcCCEEeC-CCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence 35667778888889999999 999999986666777788887665 7999999999864
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-05 Score=76.32 Aligned_cols=139 Identities=19% Similarity=0.237 Sum_probs=93.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------h---------h------------------hCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------R---------L------------------FTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------~---------~------------------~~~ 249 (489)
.-.++|||+|+.|+-+|..|++.|.+|.++++...+.. . . ...
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~ 100 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA 100 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence 45799999999999999999999999999998754310 0 0 112
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC-cEEEEEeCC-----------CcEEEcCEEEEccCCCCC-Cchh-hh
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLED-----------GSTIDADTIVIGIGAKPT-VSPF-ER 315 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~~-----------g~~i~aD~vi~a~G~~p~-~~~~-~~ 315 (489)
.+.+.+.+...+.|++++. ++.++++...+++ ++.+|.+.. ..++.|+.||.|+|.... ..++ +.
T Consensus 101 el~~~L~~~a~e~GV~I~~-~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~ 179 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFN-GTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK 179 (254)
T ss_pred HHHHHHHHHHHHcCCEEEC-CcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence 3445666677788999999 9999998765443 577777642 247999999999997543 2332 33
Q ss_pred cCCeecC------CcEEeCC--C---CCC--CCCCeEEeccccc
Q 011267 316 VGLNSSV------GGIQVDG--Q---FRT--RMPGIFAIGDVAA 346 (489)
Q Consensus 316 ~gl~~~~------g~i~vd~--~---~~t--~~~~Iya~GD~a~ 346 (489)
.++.... +....+. . -.| -+|++|++|=.+.
T Consensus 180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~t~~~~~g~~~~gm~~~ 223 (254)
T TIGR00292 180 IVLEDQVPKLGGEKSMWAEVAEVAIHENTREVVPNLYVAGMAVA 223 (254)
T ss_pred cCcccCCcccCCchhhhhhhhHHHHHhccCcccCCEEEechhhh
Confidence 3332210 0111110 0 013 4799999997775
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.4e-06 Score=84.55 Aligned_cols=57 Identities=25% Similarity=0.376 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~ 307 (489)
..+...+.+.+++.|++++. +++++++.. +++++.+|... ++ ..+.++.||+|+|..
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~-~t~v~~l~~-~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRY-DAPVTALEL-DDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEc-CCEEEEEEe-cCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 45667778888899999999 999999985 35777777663 33 368999999999854
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.7e-07 Score=90.13 Aligned_cols=124 Identities=19% Similarity=0.334 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC--C-----CCcc---ccC-----CCCCC-C-CCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER--P-----ALTK---GYL-----FPLDK-K-PARL 111 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~--~-----~l~~---~~~-----~~~~~-~-~~~~ 111 (489)
..++||+|||||++|+++|..|+++|. +|+|||+.+...+.. + .++. .++ .+.-. . ...+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~---~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGL---SVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPY 80 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCC---EEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcc
Confidence 456899999999999999999999987 699999976432210 0 0100 000 00000 0 0000
Q ss_pred CC-------------Cccc-cCCC---C-C--CC----ChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCc
Q 011267 112 PG-------------FHTC-VGSG---G-E--RQ----TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (489)
Q Consensus 112 ~~-------------~~~~-~~~~---~-~--~~----~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~ 165 (489)
.. +... .+.. . . .. +.+.+++.+++++.+++|+++..+.. ++++.+|.++.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~ 160 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAAL 160 (392)
T ss_pred cEEEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCE
Confidence 00 0000 0000 0 0 00 11223456899999999999876543 56667888899999
Q ss_pred EEecCCCCCC
Q 011267 166 LIVATGCTAS 175 (489)
Q Consensus 166 lvlATG~~~~ 175 (489)
||.|+|..+.
T Consensus 161 vV~AdG~~S~ 170 (392)
T PRK08773 161 AIAADGAAST 170 (392)
T ss_pred EEEecCCCch
Confidence 9999998763
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=9.7e-07 Score=91.60 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|++|++ +++|++|..+ +++.+.++..+|+.+++|.||.....
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~-~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRT-GAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHcCCEEEC-CCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence 46788899999999999999 9999999854 55556788888878999999998776
|
|
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=7.9e-06 Score=77.27 Aligned_cols=102 Identities=22% Similarity=0.217 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------------------------------------hhCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------------------------LFTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-------------------------------------~~~~ 249 (489)
...|+|||+|+.|+-+|..|++.|.+|.++++...+... ....
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~ 104 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV 104 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence 357999999999999999999999999999977543110 0112
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-----------CcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-----------GSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-----------g~~i~aD~vi~a~G~~p~ 309 (489)
.+...+.+..++.|++++. ++.|+++...+++++.++.... ..++.|+.||.|+|....
T Consensus 105 ~l~~~L~~~A~~~Gv~I~~-~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 105 EAAAKLAAAAIDAGAKIFN-GVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HHHHHHHHHHHHcCCEEEc-CceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 4455566777889999999 9999999765554676666531 247999999999997543
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=6.8e-07 Score=90.41 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=68.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccccCC--C-CCCCCCCCCCC--------ccccC-
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYLF--P-LDKKPARLPGF--------HTCVG- 119 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~~~~~--~-~~~~~~~~~~~--------~~~~~- 119 (489)
||+|||||+||+++|..|++.|. +|+|||+.+..+.... .+....+. . .......+.+. .....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~---~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL---RVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGT 77 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC---eEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCC
Confidence 79999999999999999999876 7999999875443211 00000000 0 00000000100 00000
Q ss_pred CCC-------CCCChhHHHHCCcEEEeCCcEEEEeCC-C--CEEEeCCCeEEeeCcEEecCCCCC
Q 011267 120 SGG-------ERQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 ~~~-------~~~~~~~~~~~~i~~~~~~~V~~id~~-~--~~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
... .....+.+.+.+++++. .+|..+..+ . ..+++.+|.++.++.+|.|+|..+
T Consensus 78 ~~~~i~~~~l~~~l~~~~~~~gv~~~~-~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 78 AYGSVDSTRLHEELLQKCPEGGVLWLE-RKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred ceeEEcHHHHHHHHHHHHHhcCcEEEc-cEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 000 01111223455888864 578888755 2 356777888899999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-05 Score=78.67 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=68.2
Q ss_pred HHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 226 AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 226 l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
.+..++...++....+-+....-+.+.+.+.+.+++.|+++++ +++|.+++.. ++.+..|.+++|+++++|.||+|+|
T Consensus 150 ~~aa~a~~eil~~~~rHiGTD~l~~vvkni~~~l~~~G~ei~f-~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 150 FRAAGAGEEILPIYQRHIGTDILPKVVKNIREYLESLGGEIRF-NTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHhCCCceeeeccccccCccchHHHHHHHHHHHHhcCcEEEe-eeEEEEEEec-CCceEEEEccCCcEEecCEEEEccC
Confidence 3445555555443333333234567888899999999999999 9999999854 5556789999999999999999999
Q ss_pred CCCCCch---hhhcCCeec
Q 011267 306 AKPTVSP---FERVGLNSS 321 (489)
Q Consensus 306 ~~p~~~~---~~~~gl~~~ 321 (489)
......+ .++.|+...
T Consensus 228 rsg~dw~~~l~~K~Gv~~~ 246 (486)
T COG2509 228 RSGRDWFEMLHKKLGVKMR 246 (486)
T ss_pred cchHHHHHHHHHhcCcccc
Confidence 9887332 344455543
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.6e-06 Score=79.10 Aligned_cols=98 Identities=20% Similarity=0.355 Sum_probs=67.6
Q ss_pred EEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchh--------------h----------------------------hh
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ--------------R----------------------------LF 247 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~--------------~----------------------------~~ 247 (489)
+|||+|+.|+-+|..|.+.|.+ ++++++.+.+.. . ..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS 80 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence 6999999999999999999999 999998732200 0 01
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC--CCCCc
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTVS 311 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~--~p~~~ 311 (489)
.+++.+++++..++.++++.+ +++|+++..++++ ..|++.+++++.||.||+|+|. .|+..
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~-~~~V~~v~~~~~~--w~v~~~~~~~~~a~~VVlAtG~~~~p~~p 143 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRF-NTRVESVRRDGDG--WTVTTRDGRTIRADRVVLATGHYSHPRIP 143 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEET-S--EEEEEEETTT--EEEEETTS-EEEEEEEEE---SSCSB---
T ss_pred HHHHHHHHHHHHhhcCccccc-CCEEEEEEEeccE--EEEEEEecceeeeeeEEEeeeccCCCCcc
Confidence 134557788888999999999 9999999987655 4688899988999999999997 55533
|
... |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-06 Score=87.23 Aligned_cols=99 Identities=26% Similarity=0.377 Sum_probs=72.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchh-h-hhCHHHH---------HHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQ-R-LFTPSLA---------QRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~-~-~~~~~~~---------~~l~~~l~~~Gv~~~~~~~~v 273 (489)
.++++|||||+.|+.+|..|++.+. +|+++++.+.+.- + .+...+. ..-.+.+++.||+++. ++.|
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-g~~V 81 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHS-GVTI 81 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEc-CCEE
Confidence 4689999999999999999999876 6899987653211 0 0111110 0112446778999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
+.+... .+ .|.+++|+++.+|.+|+|||.+|..
T Consensus 82 ~~id~~--~~--~v~~~~g~~~~yd~LViATGs~~~~ 114 (396)
T PRK09754 82 KTLGRD--TR--ELVLTNGESWHWDQLFIATGAAARP 114 (396)
T ss_pred EEEECC--CC--EEEECCCCEEEcCEEEEccCCCCCC
Confidence 999743 22 4677889899999999999999863
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.7e-07 Score=68.37 Aligned_cols=78 Identities=18% Similarity=0.368 Sum_probs=58.2
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|+|||||+.|+.+|..|++.|. +|+||++.+... +.+... + .....+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~---~vtli~~~~~~~---~~~~~~-----------~-----------~~~~~~~l~~ 52 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK---EVTLIERSDRLL---PGFDPD-----------A-----------AKILEEYLRK 52 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS---EEEEEESSSSSS---TTSSHH-----------H-----------HHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHhCc---EEEEEeccchhh---hhcCHH-----------H-----------HHHHHHHHHH
Confidence 58999999999999999999875 899999987632 111100 0 1234567888
Q ss_pred CCcEEEeCCcEEEEeCCCCE--EEeCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQT--LITNSG 158 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~--v~~~~g 158 (489)
.|+++++++.+.+++.+... |+++||
T Consensus 53 ~gV~v~~~~~v~~i~~~~~~~~V~~~~g 80 (80)
T PF00070_consen 53 RGVEVHTNTKVKEIEKDGDGVEVTLEDG 80 (80)
T ss_dssp TTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred CCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence 99999999999999876543 666665
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.9e-06 Score=87.86 Aligned_cols=101 Identities=24% Similarity=0.353 Sum_probs=80.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccch-----------hhhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~l-----------~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
...+++|||||+.|+.+|..+++.|.+|++++.. ..+. +....+++.+.+.+.+++.|++++. +++
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~~-~~~ 289 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLME-NQR 289 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEEc-CCE
Confidence 3468999999999999999999999999998642 1111 1123467778888889999999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
|+++...++ ...+.+++|+.+.+|.+|+|+|..|.
T Consensus 290 V~~I~~~~~--~~~v~~~~g~~i~~d~lIlAtGa~~~ 324 (515)
T TIGR03140 290 AKKIETEDG--LIVVTLESGEVLKAKSVIVATGARWR 324 (515)
T ss_pred EEEEEecCC--eEEEEECCCCEEEeCEEEECCCCCcC
Confidence 999975432 23567788889999999999999875
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.2e-06 Score=87.98 Aligned_cols=120 Identities=16% Similarity=0.196 Sum_probs=69.7
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCC-----CCCCCCCc--c-----c-cC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK-----PARLPGFH--T-----C-VG 119 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~-----~~~~~~~~--~-----~-~~ 119 (489)
||+|||||+||+++|.+|++... +.+|+|||+++..++....... ++...... ...++... . . ..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~-g~~Vllid~~~~~~~~~~~tW~-~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP-GLSVLLIDPKPKPPWPNDRTWC-FWEKDLGPLDSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC-CCEEEEEcCCccccccCCcccc-cccccccchHHHHheecCceEEEeCCCceEEcc
Confidence 89999999999999999955543 5689999998876433221111 11000000 00111100 0 0 00
Q ss_pred -CCCCCCChhH---HHH---CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 120 -SGGERQTPEW---YKE---KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 -~~~~~~~~~~---~~~---~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+......++ +.+ .+...+.+++|.+|+.... .+.+.+|.++.++.+|-|+|..+
T Consensus 79 ~~Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~ 142 (374)
T PF05834_consen 79 YPYCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSS 142 (374)
T ss_pred cceEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCccc
Confidence 0000111112 111 1234556689999987765 77889999999999999999554
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=88.19 Aligned_cols=124 Identities=18% Similarity=0.281 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCcc---------ccCCCCCC---CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTK---------GYLFPLDK---KP 108 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--------~l~~---------~~~~~~~~---~~ 108 (489)
.+.+||+|||||++|+++|..|++.|+ +|+|||+.+..++... .++. +++..... .+
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~G~---~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~ 79 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQHGF---SVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHP 79 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcCCC---EEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcc
Confidence 456899999999999999999999987 7999998764322110 0000 00000000 00
Q ss_pred -CC-----CCCC-cccc----C-CC--CC---CCChhH----HHHC-CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeC
Q 011267 109 -AR-----LPGF-HTCV----G-SG--GE---RQTPEW----YKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (489)
Q Consensus 109 -~~-----~~~~-~~~~----~-~~--~~---~~~~~~----~~~~-~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd 164 (489)
.. .... .... . .. .. ..+... +.+. +++++.+++++.+..+.. .+.+.+|.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~ 159 (391)
T PRK08020 80 YRRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAK 159 (391)
T ss_pred cceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeC
Confidence 00 0000 0000 0 00 00 001111 2333 889998889999875443 4666788889999
Q ss_pred cEEecCCCCCC
Q 011267 165 SLIVATGCTAS 175 (489)
Q Consensus 165 ~lvlATG~~~~ 175 (489)
.||.|.|....
T Consensus 160 ~vI~AdG~~S~ 170 (391)
T PRK08020 160 LVIGADGANSQ 170 (391)
T ss_pred EEEEeCCCCch
Confidence 99999998653
|
|
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.9e-06 Score=84.56 Aligned_cols=67 Identities=21% Similarity=0.328 Sum_probs=48.5
Q ss_pred HHHHHHHHHHH-hcCcEEEEcCceEEEEEeCCCCcEEEEE---eCCCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 250 SLAQRYEQLYQ-QNGVKFVKVGASIKNLEAGSDGRVAAVK---LEDGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 250 ~~~~~l~~~l~-~~Gv~~~~~~~~v~~i~~~~~~~v~~v~---~~~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.+.+.+.+.+. ..|+++++ ++.|+.+...+++.. .+. +.+++ ++.||.||+|.|.... .+++.+|+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~-~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~-~La~~~Gi~ 257 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKY-NHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAI-PLLQKSGIP 257 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEe-CCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 55566766665 45999999 999999986534432 233 34452 6899999999999885 777777765
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1e-06 Score=91.48 Aligned_cols=119 Identities=14% Similarity=0.221 Sum_probs=67.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC-CccccC--CCCCC-CCCCCCCCcc--------c
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA-LTKGYL--FPLDK-KPARLPGFHT--------C 117 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~-l~~~~~--~~~~~-~~~~~~~~~~--------~ 117 (489)
..+||+||||||||+++|..|++.|. +|+|||+.. ++.... .+...+ ..... ....+++... .
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl---~V~LIe~~~--p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~ 181 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGL---NVGLIGPDL--PFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIM 181 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEecCcc--cCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceee
Confidence 46899999999999999999999987 799999753 222110 100000 00000 0000000000 0
Q ss_pred cCCCCC-C---C----ChhHHHHCCcEEEeCCcEEEEeCCCC--E-EEeCCCeEEeeCcEEecCCCCC
Q 011267 118 VGSGGE-R---Q----TPEWYKEKGIEMIYQDPVTSIDIEKQ--T-LITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 118 ~~~~~~-~---~----~~~~~~~~~i~~~~~~~V~~id~~~~--~-v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+.... . . +.+.+.+.++++. +++|+.+..+.. . +.+.+|.++.++.+|.|+|...
T Consensus 182 ~~~~Yg~V~R~~L~~~Ll~~a~~~GV~~~-~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 182 IGRAYGRVSRTLLHEELLRRCVESGVSYL-SSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred ccCcccEEcHHHHHHHHHHHHHhcCCEEE-eeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000000 0 0 1112244588884 578988875433 2 4567788899999999999876
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=86.17 Aligned_cols=124 Identities=23% Similarity=0.367 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-------CCcc---------ccC---CCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-------ALTK---------GYL---FPLDKKPA 109 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-------~l~~---------~~~---~~~~~~~~ 109 (489)
|+++||+|||||++|+++|..|++.|+ +|+|+|+.+......+ .++. +++ ......+.
T Consensus 1 ~~~~dviIvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~ 77 (392)
T PRK09126 1 MMHSDIVVVGAGPAGLSFARSLAGSGL---KVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPL 77 (392)
T ss_pred CCcccEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCcc
Confidence 346899999999999999999999987 6999999865211000 0000 000 00000000
Q ss_pred -C-------CC---CCccc-cCCCC--C----CCChh-HH----HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeC
Q 011267 110 -R-------LP---GFHTC-VGSGG--E----RQTPE-WY----KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYG 164 (489)
Q Consensus 110 -~-------~~---~~~~~-~~~~~--~----~~~~~-~~----~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd 164 (489)
. .. .+... ..... . ....+ .+ +..+++++.+++|++++.... .|.+++|.++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~ 157 (392)
T PRK09126 78 RDAKVLNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTAR 157 (392)
T ss_pred ceEEEEcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeC
Confidence 0 00 00000 00000 0 00011 11 235899999999999875443 5667788899999
Q ss_pred cEEecCCCCCC
Q 011267 165 SLIVATGCTAS 175 (489)
Q Consensus 165 ~lvlATG~~~~ 175 (489)
.+|.|.|....
T Consensus 158 ~vI~AdG~~S~ 168 (392)
T PRK09126 158 LLVAADSRFSA 168 (392)
T ss_pred EEEEeCCCCch
Confidence 99999998654
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-06 Score=85.99 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=34.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.++.+||+|||||++|+++|..|++.|. +|+|||+.+..
T Consensus 4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~---~v~liE~~~~~ 42 (388)
T PRK07494 4 EKEHTDIAVIGGGPAGLAAAIALARAGA---SVALVAPEPPY 42 (388)
T ss_pred CCCCCCEEEECcCHHHHHHHHHHhcCCC---eEEEEeCCCCC
Confidence 4556899999999999999999999887 79999998653
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.5e-06 Score=86.89 Aligned_cols=100 Identities=26% Similarity=0.389 Sum_probs=80.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccc-----------hhhhhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~-----------l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
...++|||||+.|+.+|..++++|.+|++++.. .++ .+...++++.+.+.+.+++.|+++++ +++|
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~~-~~~V 289 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERFGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIMN-LQRA 289 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEEc-CCEE
Confidence 458999999999999999999999999998753 111 01123467888899999999999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+++...+ + ...|.+.+|+++.+|.||+|+|..|.
T Consensus 290 ~~I~~~~-~-~~~V~~~~g~~i~a~~vViAtG~~~r 323 (517)
T PRK15317 290 SKLEPAA-G-LIEVELANGAVLKAKTVILATGARWR 323 (517)
T ss_pred EEEEecC-C-eEEEEECCCCEEEcCEEEECCCCCcC
Confidence 9998643 2 23577788889999999999999875
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.9e-06 Score=88.35 Aligned_cols=98 Identities=21% Similarity=0.326 Sum_probs=74.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+|+|||||++|+.+|..|++.|. +|+++++.+... . +.+.. .+ .....+.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~~-~-~~~~~-----------~~-----------~~~~~~~l 189 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGK---NVTLIHRSERIL-N-KLFDE-----------EM-----------NQIVEEEL 189 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---cEEEEECCcccC-c-cccCH-----------HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999876420 0 00000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.++++.+++.+...+.+.+|+++.+|.+++|+|..|.
T Consensus 190 ~~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 190 KKHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred HHcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 788999999999999988766556678889999999999998875
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.6e-06 Score=88.91 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ +++|++|+.++ +.+..+. .+++++.+|.||+|+..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~-~~~V~~i~~~~-~~~~~~~-~~~~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRL-GTPVTSVVIDG-GGVTGVE-VDGEEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEe-CCCeeEEEEcC-CceEEEE-eCCceEECCEEEECCCH
Confidence 35677888888889999999 99999998643 4443343 56678999999999875
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=83.18 Aligned_cols=102 Identities=24% Similarity=0.325 Sum_probs=79.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------------- 244 (489)
+..+|+|||+|+.|+-+|..|++.|.+|+++++.+.+-.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 356899999999999999999999999999987642100
Q ss_pred ----h----------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEcc
Q 011267 245 ----R----------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 304 (489)
Q Consensus 245 ----~----------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~ 304 (489)
. ...+.+.+.+.+.+++.|+++++ ++++++++..+ +. ..+.+.+|+++.+|.||.|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~-~~-~~v~~~~g~~~~ad~vI~Ad 159 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRL-GTTVTAIEQDD-DG-VTVTFSDGTTGRYDLVVGAD 159 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEe-CCEEEEEEEcC-CE-EEEEEcCCCEEEcCEEEECc
Confidence 0 00134456677777788999999 99999998543 33 35778899999999999999
Q ss_pred CCCCCC
Q 011267 305 GAKPTV 310 (489)
Q Consensus 305 G~~p~~ 310 (489)
|..+..
T Consensus 160 G~~s~~ 165 (375)
T PRK06847 160 GLYSKV 165 (375)
T ss_pred CCCcch
Confidence 987754
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-06 Score=82.37 Aligned_cols=95 Identities=25% Similarity=0.452 Sum_probs=70.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccc-----------------------------------------h---
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------------------------------------L--- 243 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~-----------------------------------------l--- 243 (489)
.|+|||||..|+|+|..+++.|.+|.++... +.+ +
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 4899999999999999999999999998322 111 0
Q ss_pred --h------hhhC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 244 --Q------RLFT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 244 --~------~~~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
+ .+.| ..+...+++.+++ .+++++. .+|+++.. +++++.+|.+.+|+++.+|.||+|||.
T Consensus 81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~--~~V~~l~~-e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQ--GEVTDLIV-ENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEE--S-EEEEEE-CTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEE--cccceEEe-cCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 0 0122 2455667777777 6789876 78999975 468999999999999999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.9e-06 Score=89.07 Aligned_cols=56 Identities=23% Similarity=0.353 Sum_probs=44.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+..+...+.+.+++.|++++. ++.|++++. ++. ..|.+.+| ++.||.||+|+|...
T Consensus 182 P~~l~~~L~~~a~~~Gv~i~~-~t~V~~i~~--~~~-~~v~t~~g-~v~A~~VV~Atga~s 237 (460)
T TIGR03329 182 PGLLVRGLRRVALELGVEIHE-NTPMTGLEE--GQP-AVVRTPDG-QVTADKVVLALNAWM 237 (460)
T ss_pred HHHHHHHHHHHHHHcCCEEEC-CCeEEEEee--CCc-eEEEeCCc-EEECCEEEEcccccc
Confidence 446777888889999999999 999999974 222 35777777 699999999999654
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.4e-05 Score=82.91 Aligned_cols=68 Identities=21% Similarity=0.453 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 249 PSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 249 ~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
..+.+.+.+.+++.| +++++ ++.|++++..+++.+ .+.+ .+|+ ++.|+.||+|+|.... .+++.+|+.
T Consensus 183 ~~l~~aL~~~a~~~Ggv~i~~-~teV~~I~~~~dg~~-~v~~~~~~~G~~~~i~A~~VVvaAGg~s~-~L~~~~Gi~ 256 (494)
T PRK05257 183 GALTRQLVGYLQKQGNFELQL-GHEVRDIKRNDDGSW-TVTVKDLKTGEKRTVRAKFVFIGAGGGAL-PLLQKSGIP 256 (494)
T ss_pred HHHHHHHHHHHHhCCCeEEEe-CCEEEEEEECCCCCE-EEEEEEcCCCceEEEEcCEEEECCCcchH-HHHHHcCCC
Confidence 356777778888876 89999 999999986555533 2333 3453 6999999999998765 677777665
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-05 Score=82.69 Aligned_cols=66 Identities=18% Similarity=0.298 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe--CCC--cEEEcCEEEEccC-CCCCCchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL--EDG--STIDADTIVIGIG-AKPTVSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g--~~i~aD~vi~a~G-~~p~~~~~~~ 315 (489)
+..+...+.+.+++.|+++++ ++.++++.. +++++.+|.. .++ .++.++.||+|+| +.+|.+++++
T Consensus 189 g~~l~~~L~~~~~~~gv~i~~-~t~v~~l~~-~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~~n~~m~~~ 259 (506)
T PRK06481 189 GGYLVDGLLKNVQERKIPLFV-NADVTKITE-KDGKVTGVKVKINGKETKTISSKAVVVTTGGFGANKDMIAK 259 (506)
T ss_pred hHHHHHHHHHHHHHcCCeEEe-CCeeEEEEe-cCCEEEEEEEEeCCCeEEEEecCeEEEeCCCcccCHHHHHH
Confidence 345667788888999999999 999999985 4577766665 343 3689999999998 5666555544
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.1e-06 Score=87.18 Aligned_cols=102 Identities=24% Similarity=0.451 Sum_probs=72.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcc------hhhh----hC--HHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL------LQRL----FT--PSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~------l~~~----~~--~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++++|||+|+.|+.+|..|++++. +|+++++.+.+ ++.. .. .++.....+.+++.|++++. ++.|
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~V 79 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSFGACGLPYFVGGFFDDPNTMIARTPEEFIKSGIDVKT-EHEV 79 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcceeecCCCceEeccccCCHHHhhcCCHHHHHHCCCeEEe-cCEE
Confidence 379999999999999999998764 89999988753 1111 11 12233344667888999999 9999
Q ss_pred EEEEeCCCCcEEEEEe-CCCcEEE--cCEEEEccCCCCCCch
Q 011267 274 KNLEAGSDGRVAAVKL-EDGSTID--ADTIVIGIGAKPTVSP 312 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~-~~g~~i~--aD~vi~a~G~~p~~~~ 312 (489)
+++..+ +..+ .+.. .+++++. +|.+|+|||.+|+.+.
T Consensus 80 ~~id~~-~~~v-~~~~~~~~~~~~~~yd~lviAtG~~~~~~~ 119 (444)
T PRK09564 80 VKVDAK-NKTI-TVKNLKTGSIFNDTYDKLMIATGARPIIPP 119 (444)
T ss_pred EEEECC-CCEE-EEEECCCCCEEEecCCEEEECCCCCCCCCC
Confidence 999753 2222 2332 2356666 9999999999987543
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=4e-06 Score=84.61 Aligned_cols=123 Identities=15% Similarity=0.298 Sum_probs=71.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--------CCccc---c-----CCCCC----CCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--------ALTKG---Y-----LFPLD----KKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--------~l~~~---~-----~~~~~----~~~~ 109 (489)
+.+||+|||||++|+++|..|++.|+ +|+|+|+.+...+... .++.. . +.+.- ..+.
T Consensus 2 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~ 78 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATALGFAKQGR---SVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPY 78 (384)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCC---cEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCcc
Confidence 35799999999999999999999987 7999998752222110 11100 0 00000 0000
Q ss_pred -C---------CCCCccc---cCC-CCC--CC-ChhH----HHH-CCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCc
Q 011267 110 -R---------LPGFHTC---VGS-GGE--RQ-TPEW----YKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGS 165 (489)
Q Consensus 110 -~---------~~~~~~~---~~~-~~~--~~-~~~~----~~~-~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~ 165 (489)
. ...+... ... ... .. +... +.+ .+++++.+++|++++.+. .++++.+|.++.+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~l 158 (384)
T PRK08849 79 KRLETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKW 158 (384)
T ss_pred ceEEEEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeE
Confidence 0 0000000 000 000 00 0111 112 378999999999987544 367888999999999
Q ss_pred EEecCCCCCC
Q 011267 166 LIVATGCTAS 175 (489)
Q Consensus 166 lvlATG~~~~ 175 (489)
||.|+|....
T Consensus 159 vIgADG~~S~ 168 (384)
T PRK08849 159 VIGADGANSQ 168 (384)
T ss_pred EEEecCCCch
Confidence 9999998754
|
|
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.5e-06 Score=82.06 Aligned_cols=53 Identities=21% Similarity=0.381 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+...+.+.+.+. |++++. ++.|++++.. .|.+.+|+ +.||.||+|+|...+
T Consensus 145 ~~~~~~l~~~~~~~~Gv~i~~-~t~V~~i~~~------~v~t~~g~-i~a~~VV~A~G~~s~ 198 (365)
T TIGR03364 145 REAIPALAAYLAEQHGVEFHW-NTAVTSVETG------TVRTSRGD-VHADQVFVCPGADFE 198 (365)
T ss_pred HHHHHHHHHHHHhcCCCEEEe-CCeEEEEecC------eEEeCCCc-EEeCEEEECCCCChh
Confidence 45666677776665 999999 9999999632 46777774 789999999998654
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.7e-05 Score=79.04 Aligned_cols=103 Identities=14% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------------------- 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~---------------------------------------- 245 (489)
..++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f 88 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY 88 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence 4588999999999999999999999999999876421000
Q ss_pred ----h---------------hCHHHHHHHHHHHHhcCcE--EEEcCceEEEEEeCCCCcEEEEEeCCC--c--EEEcCEE
Q 011267 246 ----L---------------FTPSLAQRYEQLYQQNGVK--FVKVGASIKNLEAGSDGRVAAVKLEDG--S--TIDADTI 300 (489)
Q Consensus 246 ----~---------------~~~~~~~~l~~~l~~~Gv~--~~~~~~~v~~i~~~~~~~v~~v~~~~g--~--~i~aD~v 300 (489)
. -..++.+++++..++.|++ +.+ +++|++++..++. ..|.+.++ . +..+|.|
T Consensus 89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~-~t~V~~V~~~~~~--w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRF-ETEVVRVEPVDGK--WRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEe-cCEEEEEeecCCe--EEEEEEcCCCceEEEEcCEE
Confidence 0 0135677788888888988 888 9999999864332 24555432 2 4679999
Q ss_pred EEccC--CCCCCc
Q 011267 301 VIGIG--AKPTVS 311 (489)
Q Consensus 301 i~a~G--~~p~~~ 311 (489)
|+|+| ..|+.+
T Consensus 166 IvAtG~~~~P~~P 178 (461)
T PLN02172 166 VVCNGHYTEPNVA 178 (461)
T ss_pred EEeccCCCCCcCC
Confidence 99999 466644
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.9e-06 Score=88.63 Aligned_cols=122 Identities=17% Similarity=0.305 Sum_probs=70.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCC--------------CCCccccCCCC----------C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YER--------------PALTKGYLFPL----------D 105 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-y~~--------------~~l~~~~~~~~----------~ 105 (489)
++||+||||||+|+++|..|++.|. +|+|||+.+... ..+ -.+...+.... .
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 78 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGV---KTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGL 78 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecc
Confidence 4799999999999999999999987 799999976531 111 00000000000 0
Q ss_pred CCCCCCCCCccc------cCC-CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCE--EEeC--CC-eEEeeCcEEecCCCC
Q 011267 106 KKPARLPGFHTC------VGS-GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQT--LITN--SG-KLLKYGSLIVATGCT 173 (489)
Q Consensus 106 ~~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~--v~~~--~g-~~i~yd~lvlATG~~ 173 (489)
.....+...... ... .....+.+.+++.+++++.+++++++..+... +.+. +| .++.+|+||.|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~ 158 (493)
T PRK08244 79 DTRLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAG 158 (493)
T ss_pred cccCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCC
Confidence 000000000000 000 00001112334568999999999998765543 3333 45 479999999999987
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 159 S~ 160 (493)
T PRK08244 159 SI 160 (493)
T ss_pred hH
Confidence 53
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.8e-05 Score=80.15 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=62.7
Q ss_pred HHHHHHhCCCcEEEEccCCcchhh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 222 VAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 222 ~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
+...+.++|.+++..... ++.+. .....+.+.+.+.+++.|+++++ ++.|+++...+ + ...+++ +++++.+|.|
T Consensus 78 ~~~~~~~~Gv~~~~~~~g-~~~p~~~~a~~v~~~L~~~l~~~gv~i~~-~~~V~~i~~~~-~-~~~v~~-~~~~i~ad~V 152 (400)
T TIGR00275 78 LIDFFESLGLELKVEEDG-RVFPCSDSAADVLDALLNELKELGVEILT-NSKVKSIKKDD-N-GFGVET-SGGEYEADKV 152 (400)
T ss_pred HHHHHHHcCCeeEEecCC-EeECCCCCHHHHHHHHHHHHHHCCCEEEe-CCEEEEEEecC-C-eEEEEE-CCcEEEcCEE
Confidence 334455667666654332 33321 12457788888999999999999 99999997543 3 334666 4568999999
Q ss_pred EEccCCCCC---------CchhhhcCCee
Q 011267 301 VIGIGAKPT---------VSPFERVGLNS 320 (489)
Q Consensus 301 i~a~G~~p~---------~~~~~~~gl~~ 320 (489)
|+|+|.... ..+++++|...
T Consensus 153 IlAtG~~s~p~~gs~G~g~~la~~lG~~i 181 (400)
T TIGR00275 153 ILATGGLSYPQLGSTGDGYEIAESLGHTI 181 (400)
T ss_pred EECCCCcccCCCCCCcHHHHHHHHCCCCE
Confidence 999997532 13566666653
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.1e-06 Score=78.45 Aligned_cols=35 Identities=29% Similarity=0.281 Sum_probs=31.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+|+|||+|+||++||..|++.|+ +|||+||....
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~---~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGR---EVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCc---EEEEEEcCCCc
Confidence 579999999999999999999987 79999998643
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-06 Score=85.03 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=33.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+.+||+|||||+||+++|..|++.|. +|+|+|+.+..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 40 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQSGL---RVALLAPRAPP 40 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhCCC---eEEEEecCCCc
Confidence 45799999999999999999999987 79999998663
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=6.5e-06 Score=84.13 Aligned_cols=99 Identities=23% Similarity=0.363 Sum_probs=72.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhh----------CHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~----------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
..++++|||||+.|+.+|..|...+.+|++|++.+.+.-... ...+...+...++..|++++. .+|+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~--~~V~~ 86 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLR--AVVYD 86 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEE--EEEEE
Confidence 457899999999999999999777789999998875422111 112333355667778899876 78999
Q ss_pred EEeCCCCcEEEEEe----------CCCcEEEcCEEEEccCCCCCC
Q 011267 276 LEAGSDGRVAAVKL----------EDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 276 i~~~~~~~v~~v~~----------~~g~~i~aD~vi~a~G~~p~~ 310 (489)
|+.+ .+ .|.+ .+|+++++|.+|+|+|..|+.
T Consensus 87 Id~~--~~--~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~ 127 (424)
T PTZ00318 87 VDFE--EK--RVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNT 127 (424)
T ss_pred EEcC--CC--EEEEecccccccccCCceEecCCEEEECCCcccCC
Confidence 9743 22 2333 456789999999999999864
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.2e-06 Score=78.00 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=73.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--hhhCH-----------HHH--H--HHHHHHHhcCcEEEEcCc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--RLFTP-----------SLA--Q--RYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--~~~~~-----------~~~--~--~l~~~l~~~Gv~~~~~~~ 271 (489)
+|+|||||+.|+.+|..|++.+.+++++++.+.... ..+.. ... . .+.+.+...+++++. ++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~ 79 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIRL-NA 79 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEEH-HH
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccccccccceEEEee-cc
Confidence 589999999999999999999999999977653211 00000 011 1 334445778999988 89
Q ss_pred eEEEEEeCCCC------cEEEEEeCCCcEEEcCEEEEccCCCCCCchhhh
Q 011267 272 SIKNLEAGSDG------RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER 315 (489)
Q Consensus 272 ~v~~i~~~~~~------~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~ 315 (489)
++.++...... .+......++.++.+|.+|+|+|..|+...++.
T Consensus 80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g 129 (201)
T PF07992_consen 80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPG 129 (201)
T ss_dssp TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTT
T ss_pred ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCC
Confidence 99999865331 111223455678999999999999887554443
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.6e-06 Score=83.90 Aligned_cols=69 Identities=23% Similarity=0.401 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE---eCCC--cEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK---LEDG--STIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~---~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
+..+...+.+.+++.|+++++ +++|++++..+++.+ .+. +.+| .++.+|.||+|+|.... .+++.+|+.
T Consensus 177 p~~l~~aL~~~a~~~Gv~i~~-~t~V~~i~~~~~~~v-~v~~~~~~~g~~~~i~A~~VV~AAG~~s~-~La~~~Gi~ 250 (483)
T TIGR01320 177 FGALTKQLLGYLVQNGTTIRF-GHEVRNLKRQSDGSW-TVTVKNTRTGGKRTLNTRFVFVGAGGGAL-PLLQKSGIP 250 (483)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-CCEEEEEEEcCCCeE-EEEEeeccCCceEEEECCEEEECCCcchH-HHHHHcCCC
Confidence 346777888888889999999 999999986544433 233 2334 26899999999998764 667777765
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.9e-05 Score=79.39 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhh
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
..+...+.+.+.+.|++++. ++.|+++...+ +.+ .|.+++| ++.+|.||+|+|.... .++.
T Consensus 149 ~~~~~~~~~~~~~~gv~i~~-~~~v~~i~~~~-~~~-~v~~~~g-~~~a~~vV~A~G~~~~-~l~~ 209 (376)
T PRK11259 149 ELAIKAHLRLAREAGAELLF-NEPVTAIEADG-DGV-TVTTADG-TYEAKKLVVSAGAWVK-DLLP 209 (376)
T ss_pred HHHHHHHHHHHHHCCCEEEC-CCEEEEEEeeC-CeE-EEEeCCC-EEEeeEEEEecCcchh-hhcc
Confidence 45556666777889999999 99999998643 333 5777777 7999999999998654 4444
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=3e-05 Score=78.94 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.++.+.+.+.++..|.++++ ++.|++|..++++++..|++.+|+++.|+.||......|.
T Consensus 232 g~L~qal~r~~a~~Gg~~~L-~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYML-NTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEc-CCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECcccccc
Confidence 46778888888999999999 9999999876667778899999999999999999888876
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.8e-06 Score=84.52 Aligned_cols=123 Identities=16% Similarity=0.230 Sum_probs=71.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CC-CCcc---------ccCCCCCCC-CCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RP-ALTK---------GYLFPLDKK-PARL 111 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-------~~-~l~~---------~~~~~~~~~-~~~~ 111 (489)
+.+||+||||||+|+++|..|++.|+ +|+|+|+.+...-. |. .++. +++...... ...+
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~---~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~ 78 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL---RVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCY 78 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC---EEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccc
Confidence 45899999999999999999999987 79999987652210 00 0000 000000000 0000
Q ss_pred CCC----------ccc----cCCCC---CC---CChhH----HHH-CCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeC
Q 011267 112 PGF----------HTC----VGSGG---ER---QTPEW----YKE-KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYG 164 (489)
Q Consensus 112 ~~~----------~~~----~~~~~---~~---~~~~~----~~~-~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd 164 (489)
.+. ... .+... .. .+... ..+ .+++++.+++|+.++.+. -++++.+|+++.+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~ 158 (400)
T PRK08013 79 HGMEVWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTAR 158 (400)
T ss_pred cEEEEEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEee
Confidence 000 000 00000 00 00111 223 278999999999986544 35667789899999
Q ss_pred cEEecCCCCCC
Q 011267 165 SLIVATGCTAS 175 (489)
Q Consensus 165 ~lvlATG~~~~ 175 (489)
.||-|.|....
T Consensus 159 lvVgADG~~S~ 169 (400)
T PRK08013 159 LVVGADGANSW 169 (400)
T ss_pred EEEEeCCCCcH
Confidence 99999997653
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=3e-06 Score=86.27 Aligned_cols=45 Identities=13% Similarity=0.283 Sum_probs=36.2
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+.+++++.++++.+++.... +|++.+|.++.+|.||.|.|....
T Consensus 123 ~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vVgAdG~~S~ 169 (405)
T PRK05714 123 HDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVVAADGANSA 169 (405)
T ss_pred hcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCch
Confidence 345899999999999876543 566788888999999999998654
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=6e-06 Score=82.72 Aligned_cols=97 Identities=20% Similarity=0.335 Sum_probs=72.6
Q ss_pred cEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcch-----hhh----h-CHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLL-----QRL----F-TPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l-----~~~----~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+|+|||||+.|+.+|..+.++ +.+|+++++.+... +.. . ..++...+.+.+++.|++++. + .|+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~-~-~v~~ 78 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVI-A-EATG 78 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEE-E-EEEE
Confidence 589999999999999999643 57899999876431 111 0 122333456677788999988 4 8999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.+ ++ .|.+++|+++.+|.+|+|+|..|+..
T Consensus 79 id~~--~~--~V~~~~g~~~~yD~LviAtG~~~~~~ 110 (364)
T TIGR03169 79 IDPD--RR--KVLLANRPPLSYDVLSLDVGSTTPLS 110 (364)
T ss_pred Eecc--cC--EEEECCCCcccccEEEEccCCCCCCC
Confidence 9743 22 47788998999999999999998744
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.5e-06 Score=90.89 Aligned_cols=97 Identities=20% Similarity=0.443 Sum_probs=74.1
Q ss_pred EEEECCCHHHHHHHHHHHhCC---CcEEEEccCCcc------hhhhhC-----HHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 210 VVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g---~~V~lv~~~~~~------l~~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
++|||+|+.|+.+|..|++++ .+|+++++.+++ ++..+. +++.....+.+++.||++++ ++.|+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~-g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYT-GETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEc-CCeEEE
Confidence 589999999999999988764 589999988764 222221 12222335677889999999 999999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.. .+ .|.+.+|+++.+|.+|+|||..|+..
T Consensus 80 Id~~--~k--~V~~~~g~~~~yD~LVlATGs~p~~p 111 (785)
T TIGR02374 80 IDTD--QK--QVITDAGRTLSYDKLILATGSYPFIL 111 (785)
T ss_pred EECC--CC--EEEECCCcEeeCCEEEECCCCCcCCC
Confidence 9843 22 47788898999999999999998754
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.23 E-value=5e-06 Score=83.44 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------CC---------CCcccc-----------CC-C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------RP---------ALTKGY-----------LF-P 103 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~------~~---------~l~~~~-----------~~-~ 103 (489)
++||+|||||++|+++|..|++.|+ +|+|+|+.+...-. ++ .+...+ +. .
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 77 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGY---SVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDR 77 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---CEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeC
Confidence 4689999999999999999999987 69999987653110 00 000000 00 0
Q ss_pred CCCCCCCCCCC-c--cccCCCCC-C---CChhHHH---HCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCC
Q 011267 104 LDKKPARLPGF-H--TCVGSGGE-R---QTPEWYK---EKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 104 ~~~~~~~~~~~-~--~~~~~~~~-~---~~~~~~~---~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG 171 (489)
........... . ...+.... . .+.+.+. ..+++++.+++|+.++.+.. ++++++|.++.+|.||-|.|
T Consensus 78 ~g~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG 157 (372)
T PRK05868 78 DGNELFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADG 157 (372)
T ss_pred CCCEEeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCC
Confidence 00000000000 0 00000000 0 0111111 35789999999999875543 56778998999999999999
Q ss_pred CCCC
Q 011267 172 CTAS 175 (489)
Q Consensus 172 ~~~~ 175 (489)
....
T Consensus 158 ~~S~ 161 (372)
T PRK05868 158 LHSN 161 (372)
T ss_pred CCch
Confidence 7654
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=5.5e-06 Score=83.39 Aligned_cols=99 Identities=16% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||+.|+.+|..|++.|. +|+++++.+...- ..+ + ..+ .....+.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~~g~---~Vtlv~~~~~~l~-------~~~-~-----~~~-----------~~~l~~~ 192 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGK---AVTLVDNAASLLA-------SLM-P-----PEV-----------SSRLQHR 192 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEecCCcccc-------hhC-C-----HHH-----------HHHHHHH
Confidence 35689999999999999999999875 7999998764210 000 0 000 0123556
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.+++++.++++.+++.+.. .+.+.+|.++.+|.+|+|+|..|.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 7788999999999999987543 567788999999999999998875
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=98.22 E-value=2.4e-06 Score=87.34 Aligned_cols=60 Identities=25% Similarity=0.403 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~ 309 (489)
...+...+.+.+++.|+++++ ++.++++..+ +++|.++... +|+ ++.|+.||+|+|-...
T Consensus 140 g~~~~~~l~~~~~~~gv~i~~-~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 140 GKALIEALAKAAEEAGVDIRF-NTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHTTEEEEE-SEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred HHHHHHHHHHHHhhcCeeeec-cceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence 456778888999999999999 9999999864 6788888876 454 5889999999998665
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=8.7e-06 Score=82.33 Aligned_cols=122 Identities=17% Similarity=0.238 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CC-CCcc---------ccC----------------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RP-ALTK---------GYL---------------- 101 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~~-~l~~---------~~~---------------- 101 (489)
+.++||+||||||||+++|..|++.|+ +|+|+|+.+..... +. .++. +++
T Consensus 3 ~~~~~V~IiGgGpaGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 79 (388)
T PRK07045 3 NNPVDVLINGSGIAGVALAHLLGARGH---SVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRL 79 (388)
T ss_pred CceeEEEEECCcHHHHHHHHHHHhcCC---cEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEE
Confidence 456899999999999999999999987 69999988753110 00 0000 000
Q ss_pred CCCCCCCCCCCCCccccCCCCC-----CCChhHH----H-HCCcEEEeCCcEEEEeCCC-C---EEEeCCCeEEeeCcEE
Q 011267 102 FPLDKKPARLPGFHTCVGSGGE-----RQTPEWY----K-EKGIEMIYQDPVTSIDIEK-Q---TLITNSGKLLKYGSLI 167 (489)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----~-~~~i~~~~~~~V~~id~~~-~---~v~~~~g~~i~yd~lv 167 (489)
+........+ .+......... ..+.+.+ . ..+++++.+++++.+.... . .+++.+|+++.+|.||
T Consensus 80 ~~~g~~~~~~-~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vI 158 (388)
T PRK07045 80 YHDKELIASL-DYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLV 158 (388)
T ss_pred ecCCcEEEEe-cCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEE
Confidence 0000000000 00000000000 0011211 1 2478999999999987542 2 4777888899999999
Q ss_pred ecCCCCC
Q 011267 168 VATGCTA 174 (489)
Q Consensus 168 lATG~~~ 174 (489)
-|.|...
T Consensus 159 gADG~~S 165 (388)
T PRK07045 159 GADGARS 165 (388)
T ss_pred ECCCCCh
Confidence 9999865
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.8e-06 Score=86.81 Aligned_cols=97 Identities=18% Similarity=0.284 Sum_probs=71.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||++|+.+|..|++.|. +|+|+++.+... + ..+. .+ .....+.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~ll---~--------~~d~---e~-----------~~~l~~~L 221 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGT---KVTIVEMAPQLL---P--------GEDE---DI-----------AHILREKL 221 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---c--------cccH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999875421 0 0000 00 12234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeC-CC--eEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITN-SG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~-~g--~~i~yd~lvlATG~~~~ 175 (489)
++.|++++++++|.+++.+...+.+. +| .++.+|.+++|||..|.
T Consensus 222 ~~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 222 ENDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 78899999999999998766554442 34 36899999999998876
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.5e-05 Score=78.89 Aligned_cols=58 Identities=28% Similarity=0.430 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHhcCc-EEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGV-KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv-~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.|+ .+.. ++.+..+... . ....|.+.+|+ +.+|.||+|+|...+
T Consensus 155 p~~~~~~l~~~~~~~G~~~~~~-~~~~~~~~~~-~-~~~~v~t~~g~-i~a~~vv~a~G~~~~ 213 (387)
T COG0665 155 PRLLTRALAAAAEELGVVIIEG-GTPVTSLERD-G-RVVGVETDGGT-IEADKVVLAAGAWAG 213 (387)
T ss_pred HHHHHHHHHHHHHhcCCeEEEc-cceEEEEEec-C-cEEEEEeCCcc-EEeCEEEEcCchHHH
Confidence 34777788888999995 5555 8888888753 3 55678888886 999999999997654
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=6e-05 Score=77.81 Aligned_cols=38 Identities=21% Similarity=0.341 Sum_probs=33.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|||||+|||+||+.|++.|. +.+|+|+|+++..+
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~-~~~V~vlEa~~~~G 38 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGP-DADITLLEASDRLG 38 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCC-CCCEEEEEcCCCCc
Confidence 479999999999999999999873 34899999998764
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=4e-06 Score=85.00 Aligned_cols=123 Identities=20% Similarity=0.211 Sum_probs=70.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC--CCcc---ccC-----CC----------------
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP--ALTK---GYL-----FP---------------- 103 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~--~l~~---~~~-----~~---------------- 103 (489)
++.||+|||||++|+++|..|++.|+ +|+|+|+.+...-... .++. ..+ .+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~---~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGI---KVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---cEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEe
Confidence 45799999999999999999999987 6999999865321000 0000 000 00
Q ss_pred --CCCCCCCCC--C-CccccCCCCC-CC---C----hhHHHHC-CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEE
Q 011267 104 --LDKKPARLP--G-FHTCVGSGGE-RQ---T----PEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (489)
Q Consensus 104 --~~~~~~~~~--~-~~~~~~~~~~-~~---~----~~~~~~~-~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lv 167 (489)
.......++ . +....+.... .. + .+.+.+. +++++.++++++++.+.. .+.+.+|.++.+|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI 159 (396)
T ss_pred CCCCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEE
Confidence 000000000 0 0000000000 00 0 1112233 488999999999986543 5566788889999999
Q ss_pred ecCCCCCC
Q 011267 168 VATGCTAS 175 (489)
Q Consensus 168 lATG~~~~ 175 (489)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99998654
|
|
| >KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1e-05 Score=78.13 Aligned_cols=59 Identities=19% Similarity=0.308 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~aD~vi~a~G~~p~ 309 (489)
.+..++-+..++.||+++. +....++.-++++.|.+|.++| |-++.+..-|.|-|.+..
T Consensus 184 ~~v~wLg~kAEe~GvEiyP-g~aaSevly~edgsVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~G~ 257 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYP-GFAASEVLYDEDGSVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCHGS 257 (621)
T ss_pred HHHHHHHHHHHhhCceecc-ccchhheeEcCCCcEeeEeeccccccCCCCccccccccceecceeEEEeccccch
Confidence 4556777788899999999 9999999888899998888754 236788888999887764
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=98.20 E-value=5e-05 Score=78.16 Aligned_cols=67 Identities=13% Similarity=0.248 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCCC-CCCchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAK-PTVSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~~-p~~~~~~~ 315 (489)
...+.+.+.+.+++.|+++++ ++.++++..++++++.+|+.. +++ .+.++.||+|+|.. .|.++++.
T Consensus 129 g~~l~~~l~~~~~~~gv~i~~-~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~n~~m~~~ 200 (439)
T TIGR01813 129 GAEIVQKLYKKAKKEGIDTRL-NSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGSNKEMIAK 200 (439)
T ss_pred HHHHHHHHHHHHHHcCCEEEe-CCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCCCHHHHHH
Confidence 356777888889999999999 999999987656777776653 343 47899999999954 44444433
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.1e-06 Score=84.54 Aligned_cols=42 Identities=17% Similarity=0.266 Sum_probs=34.8
Q ss_pred CcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 134 GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++++.+.+|++++.+. ..+.+.+|+++.+|.||.|.|....
T Consensus 126 ~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgADG~~S~ 169 (405)
T PRK08850 126 NVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGADGANSW 169 (405)
T ss_pred CeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEeCCCCCh
Confidence 68999999999986543 3677788989999999999998653
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.1e-06 Score=86.57 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++.+||+|||||++|+++|..|++.|. +|+|||+.+.
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~---~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGV---RVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 567899999999999999999999987 7999999864
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.7e-06 Score=80.44 Aligned_cols=99 Identities=22% Similarity=0.428 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchhhhh----------CHHHHHHHHHHHHhcC-cEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQNG-VKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~----------~~~~~~~l~~~l~~~G-v~~~~~~~~v 273 (489)
.+++||+|||+.|+.+|..|.+.- .++++|++.+..+-..+ ..++...+.+.+++.+ |+++. .+|
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~--~~V 80 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQ--GEV 80 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEE--EEE
Confidence 578999999999999999999874 88999999875432111 2344456778888666 99987 789
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++|+.+ .+ .|.++++..+++|.+|+++|..+++.
T Consensus 81 ~~ID~~--~k--~V~~~~~~~i~YD~LVvalGs~~~~f 114 (405)
T COG1252 81 TDIDRD--AK--KVTLADLGEISYDYLVVALGSETNYF 114 (405)
T ss_pred EEEccc--CC--EEEeCCCccccccEEEEecCCcCCcC
Confidence 999743 32 57888877899999999999998753
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.8e-06 Score=81.04 Aligned_cols=121 Identities=17% Similarity=0.204 Sum_probs=68.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC---Cccc---cC-----CCCCCCCC-----CC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA---LTKG---YL-----FPLDKKPA-----RL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~---~y~~~~---l~~~---~~-----~~~~~~~~-----~~ 111 (489)
++||+||||||||+++|..|++. + +|+|+|+.+.. ++..+- ++.. .+ ........ ..
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~~-~---~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~ 76 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-M---KVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAV 76 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhcc-C---CEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecccccee
Confidence 47999999999999999999987 6 79999987643 222110 1100 00 00000000 00
Q ss_pred C--CCcc----ccCCCC----CCCChhHH---HHCCcEEEeCCcEEEEeCCCC--EEEe-CCCe--EEeeCcEEecCCCC
Q 011267 112 P--GFHT----CVGSGG----ERQTPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLIT-NSGK--LLKYGSLIVATGCT 173 (489)
Q Consensus 112 ~--~~~~----~~~~~~----~~~~~~~~---~~~~i~~~~~~~V~~id~~~~--~v~~-~~g~--~i~yd~lvlATG~~ 173 (489)
. .+.. ..+... ...+..++ ...+++++.++.+..+..+.. .+.+ .+|. ++.+|.+|.|+|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~ 156 (351)
T PRK11445 77 KTIDLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGAN 156 (351)
T ss_pred eEecccccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCC
Confidence 0 0000 000000 00111222 235789999988988875443 3443 4564 68999999999986
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 157 S~ 158 (351)
T PRK11445 157 SM 158 (351)
T ss_pred cH
Confidence 53
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=81.55 Aligned_cols=101 Identities=22% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----hhCHHHHHHHHH------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQRYEQ------------------------ 257 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----~~~~~~~~~l~~------------------------ 257 (489)
..+|+|||||+.|+.+|..|++.|.+|+++++.+..... .+.+...+.+.+
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 578999999999999999999999999999988643221 012222222211
Q ss_pred -------------------HHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 258 -------------------LYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 258 -------------------~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.|.+ .+++++. +++|++++.++ +.+ .+.+++|+++.||+||.|-|.....
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHL-GETLVGFEQDG-DRV-TARFADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EeeccCCCccccCHHHHHHHHHHhCCCcEEEc-CCEEEEEEecC-CeE-EEEECCCCEEEeCEEEECCCCCchH
Confidence 1111 1356888 99999998543 333 5888999999999999999986643
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.8e-06 Score=82.23 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=65.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC----------CCCCCCCCccccC---
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK----------KPARLPGFHTCVG--- 119 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~--- 119 (489)
||+|||||+||+++|..|++. .++.+|+|+|+.+..+-+++. .++..... ....++.......
T Consensus 1 DviIvGaG~AGl~lA~~L~~~-~~g~~V~lle~~~~~~~~~tw---~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~ 76 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA-RPDFRIRVIEAGRTIGGNHTW---SFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYR 76 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc-CCCCeEEEEeCCCCCCCcccc---eecccccchhhhhhhhhhheEeCCCCEEECcchh
Confidence 799999999999999999987 123479999998743221110 01100000 0001111000000
Q ss_pred -----CCCCCCChhH----HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCC
Q 011267 120 -----SGGERQTPEW----YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 120 -----~~~~~~~~~~----~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+......++ .++.+..+..+++|..++.+ .+++.+|.++.++.||-|.|..+
T Consensus 77 ~~l~~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~--~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 77 RKLKTAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDAD--GVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred hhcCCCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCC--EEEECCCCEEEeeEEEECCCCCC
Confidence 0000011122 12223346667889988654 36678899999999999999765
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.1e-06 Score=85.02 Aligned_cols=96 Identities=23% Similarity=0.363 Sum_probs=70.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||+|+.|+.+|..|++.|. +|++++++..++. . +. .+ .....+.+
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~---~Vtlv~~~~~l~~----~--------~~---~~-----------~~~l~~~l 228 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGS---RVTVLARSRVLSQ----E--------DP---AV-----------GEAIEAAF 228 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEECCCCCCC----C--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 7999986432211 0 00 00 02245667
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++++..++.+... +.+.+ .++.+|.+++|+|..|..
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~-~~i~~D~vi~a~G~~pn~ 275 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNA-GTLRAEQLLVATGRTPNT 275 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECC-CEEEeCEEEEccCCCCCc
Confidence 7889999999999999876553 33334 469999999999998863
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=7e-06 Score=86.87 Aligned_cols=38 Identities=21% Similarity=0.284 Sum_probs=34.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+..+||+|||||++|+++|..|+++|+ +|+|+|+.+.
T Consensus 4 ~~~~~~VlIVGaGpaGL~~Al~La~~G~---~v~viEr~~~ 41 (545)
T PRK06126 4 NTSETPVLIVGGGPVGLALALDLGRRGV---DSILVERKDG 41 (545)
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 3456899999999999999999999987 6999998864
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.2e-05 Score=81.55 Aligned_cols=43 Identities=16% Similarity=0.315 Sum_probs=34.5
Q ss_pred CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+++++.+++|+++..+.. .+++.+|.++.+|.||.|.|....
T Consensus 126 ~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~AdG~~S~ 170 (395)
T PRK05732 126 PGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLLVAADGSHSA 170 (395)
T ss_pred CCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCChh
Confidence 4789998999999875443 566778888999999999998653
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-06 Score=86.36 Aligned_cols=98 Identities=19% Similarity=0.329 Sum_probs=72.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+++++.+... |.+ +. .+ .....+.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~l 223 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGA---EVTIVEALPRIL---PGE--------DK---EI-----------SKLAERAL 223 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCcC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999876421 100 00 00 02235567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCC---eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSG---KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g---~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.+... +.+.++ +++++|.+|+|+|..|..
T Consensus 224 ~~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~ 274 (462)
T PRK06416 224 KKRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNT 274 (462)
T ss_pred HHcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCC
Confidence 7889999999999999875443 444555 679999999999998763
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.8e-05 Score=83.46 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
+..+...+....+++|+++++ +++|+.+... ++++.+|++. ++ .++.||.||.|+|.... .+++..+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~-~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~-~l~~~~g 219 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILT-YHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQ-HIAEYAD 219 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-ccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHH-HHHHhcC
Confidence 345666666777889999999 9999999854 4566666653 23 37999999999998764 4444444
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.7e-05 Score=80.72 Aligned_cols=37 Identities=24% Similarity=0.339 Sum_probs=33.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc----CCCCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEH----GMADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~----g~~~~~V~li~~~~~~~ 90 (489)
++||+|||||+|||+||+.|.++ |+ +|+|+|+++..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~---~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPV---ELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCC---cEEEEEcCCcCc
Confidence 46899999999999999999998 65 799999998764
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=88.77 Aligned_cols=101 Identities=19% Similarity=0.437 Sum_probs=75.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhC----CCcEEEEccCCcch------hhhhC----HHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW----KLDTTIIFPENHLL------QRLFT----PSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~----g~~V~lv~~~~~~l------~~~~~----~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++++|||+|+.|+.+|..|.+. +.+|+++.+.+++. +..+. .++.....+.+++.||+++. ++.|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~~~~~~l~~~~~~~~~~~gI~~~~-g~~V 82 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLV-GERA 82 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcCCCHHHccCCCHHHHHhCCCEEEc-CCEE
Confidence 5899999999999999999765 46899998887642 11111 12222334567889999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
..+... .+ .|.+.+|+++.+|.+|+|||..|..+.+
T Consensus 83 ~~Id~~--~~--~V~~~~G~~i~yD~LVIATGs~p~~p~i 118 (847)
T PRK14989 83 ITINRQ--EK--VIHSSAGRTVFYDKLIMATGSYPWIPPI 118 (847)
T ss_pred EEEeCC--Cc--EEEECCCcEEECCEEEECCCCCcCCCCC
Confidence 999743 22 4677888899999999999999875433
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-06 Score=87.79 Aligned_cols=36 Identities=25% Similarity=0.424 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.++||||||||+||+.||..+++.|. +|.|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~G~---kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARMGA---KTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHcCC---cEEEEeccc
Confidence 356999999999999999999999987 699999874
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=81.19 Aligned_cols=121 Identities=18% Similarity=0.224 Sum_probs=70.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-C-CCCc-c--------cc----C-----------C-CC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-R-PALT-K--------GY----L-----------F-PL 104 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~-~~l~-~--------~~----~-----------~-~~ 104 (489)
.||+|||||++|+++|..|++.|+ +|+|+|+.+...-. + ..+. . ++ . . ..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 77 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGH---EPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPT 77 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---ceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCC
Confidence 379999999999999999999987 69999987643100 0 0000 0 00 0 0 00
Q ss_pred CCCCCCCC--CCccccCCCCCCC----ChhHH---HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCC
Q 011267 105 DKKPARLP--GFHTCVGSGGERQ----TPEWY---KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 105 ~~~~~~~~--~~~~~~~~~~~~~----~~~~~---~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~ 173 (489)
......++ .+....+...... +...+ ...+++++.+++|++++.+.. ++.+++|+++.+|.||-|.|..
T Consensus 78 g~~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 78 GRRKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred CCEEEEecHHHccccCCCceEEEEHHHHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCC
Confidence 00000000 0000000000000 01111 124689999999999986554 4667889889999999999976
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 158 S~ 159 (391)
T PRK07588 158 SH 159 (391)
T ss_pred cc
Confidence 54
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=81.10 Aligned_cols=116 Identities=16% Similarity=0.126 Sum_probs=68.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC--Ccc---------ccC----------------CCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA--LTK---------GYL----------------FPLD 105 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~--l~~---------~~~----------------~~~~ 105 (489)
||+|||||+||+++|..|++.|+ +|+|+|+.+........ +.. +++ .+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~---~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGH---EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 79999999999999999999987 69999998753211000 000 000 0000
Q ss_pred CCCCCCCCCccccCCCCC----CCChhHHHH--CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 106 KKPARLPGFHTCVGSGGE----RQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.....+ ....+.... ..+.+.+.+ .+.+++.+++|++++.+.. ++++.+|.++.+|.||-|.|...
T Consensus 79 ~~~~~~---~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S 152 (373)
T PRK06753 79 TLLNKV---KLKSNTLNVTLHRQTLIDIIKSYVKEDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHS 152 (373)
T ss_pred CEEeec---ccccCCccccccHHHHHHHHHHhCCCceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcch
Confidence 000000 000000000 001122222 2456888999999976544 56778898899999999999764
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.16 E-value=8e-06 Score=83.36 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=33.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||+|||||+||+++|..|++.|+ +|+|+|+.+..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGL---RIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCC---EEEEEecCCcc
Confidence 46899999999999999999999987 79999998753
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.2e-05 Score=81.24 Aligned_cols=121 Identities=18% Similarity=0.197 Sum_probs=70.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCcc---------cc----------------CC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTK---------GY----------------LF 102 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~~---------~~----------------~~ 102 (489)
.+||+|||||++|+++|..|++.|. +|+|||+.+....... .++. +. +.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~---~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~ 78 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGL---DVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVD 78 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEe
Confidence 5799999999999999999999997 7999999821111100 0000 00 00
Q ss_pred CCCC--CCCCCCCCc-----cccC-CCCCCCChhHHHHC-CcEEEeCCcEEEEeCCCC--EEEeC-CCeEEeeCcEEecC
Q 011267 103 PLDK--KPARLPGFH-----TCVG-SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQ--TLITN-SGKLLKYGSLIVAT 170 (489)
Q Consensus 103 ~~~~--~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~-~i~~~~~~~V~~id~~~~--~v~~~-~g~~i~yd~lvlAT 170 (489)
.... ...+..... .... ......+.+...+. +++++.+++|+.++.+.. ++++. +|+++.+|.||-|-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 79 DGGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGAD 158 (387)
T ss_pred cCCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECC
Confidence 0000 000000000 0000 00000001222233 489999999999987653 57777 99999999999999
Q ss_pred CCCC
Q 011267 171 GCTA 174 (489)
Q Consensus 171 G~~~ 174 (489)
|...
T Consensus 159 G~~S 162 (387)
T COG0654 159 GANS 162 (387)
T ss_pred CCch
Confidence 9754
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.5e-06 Score=84.97 Aligned_cols=98 Identities=21% Similarity=0.379 Sum_probs=71.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+|+|||||++|+.+|..|++.|. +|+||++.+... |.. + ..+ .....+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~---~Vtli~~~~~il---~~~--------~---~~~-----------~~~l~~~l 231 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGV---EVTVVEAADRIL---PTE--------D---AEL-----------SKEVARLL 231 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccC---CcC--------C---HHH-----------HHHHHHHH
Confidence 4799999999999999999999875 799999876420 000 0 000 01234567
Q ss_pred HHCCcEEEeCCcEEEEeC--CCCE--EEeCCC--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDI--EKQT--LITNSG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~--~~~~--v~~~~g--~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|..++. +... +.+.+| .+++||.+++|+|..|..
T Consensus 232 ~~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~ 283 (472)
T PRK05976 232 KKLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNT 283 (472)
T ss_pred HhcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCC
Confidence 888999999999999974 3332 233456 368999999999998863
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.4e-06 Score=83.34 Aligned_cols=95 Identities=14% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ + . .+ .....+.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~---~~~------d--~---~~-----------~~~l~~~l 199 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGL---HPTLIHRSDKIN---KLM------D--A---DM-----------NQPILDEL 199 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---cEEEEecccccc---hhc------C--H---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799999875421 100 0 0 00 02235567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.+++|.+++. ..+.+.+|+++.+|.+++|+|.+|.
T Consensus 200 ~~~gI~i~~~~~v~~i~~--~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 200 DKREIPYRLNEEIDAING--NEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HhcCCEEEECCeEEEEeC--CEEEECCCCEEEeCEEEECcCCCcC
Confidence 888999999999999974 4677788888999999999998875
|
|
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.14 E-value=6e-05 Score=80.29 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
..+...+.+.+++.||+++. ++.++++..++++++.+|.. .+|+ .+.|+.||+|||--.
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~-~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 212 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFI-EYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGGYG 212 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEE-eEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCCc
Confidence 34555666777778999999 99999988654578888764 3564 688999999999643
|
|
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.8e-05 Score=75.20 Aligned_cols=97 Identities=21% Similarity=0.288 Sum_probs=73.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh---------------------------------------h----
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------------------------R---- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------------------------------------~---- 245 (489)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.... .
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE 81 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence 589999999999999999999999999998743210 0
Q ss_pred ------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-CcEEEcCEEEEccCCCC
Q 011267 246 ------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~aD~vi~a~G~~p 308 (489)
.....+.+.+.+.+++.|++++. +++++++...++ .+ .+.+.+ +.++.+|.||.|+|...
T Consensus 82 ~~~~~~i~r~~l~~~l~~~~~~~gv~~~~-~~~v~~~~~~~~-~~-~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 82 TELAYVIDRDAFDEQLAERAQEAGAELRL-GTTVLDVEIHDD-RV-VVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred CCcEEEEEHHHHHHHHHHHHHHcCCEEEe-CcEEeeEEEeCC-EE-EEEEcCccEEEEeCEEEECCCcch
Confidence 01124556777888889999999 999999875443 33 344443 45799999999999865
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.13 E-value=9e-06 Score=83.74 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=73.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+.+|..|++.|. +|+++++.+.... .+ + ..+ .....+.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------d---~~~-----------~~~l~~~l 217 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGV---QVTLIYRGELILR---GF--------D---DDM-----------RALLARNM 217 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEeCCCCCc---cc--------C---HHH-----------HHHHHHHH
Confidence 5689999999999999999999875 7999998654210 00 0 000 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCC--CCEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIE--KQTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~--~~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.. ...+.+.+|+++.+|.+++|+|..|..
T Consensus 218 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~ 265 (446)
T TIGR01424 218 EGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNT 265 (446)
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCC
Confidence 7889999999999999753 335666788889999999999988753
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=3.7e-05 Score=79.73 Aligned_cols=40 Identities=25% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCC---CCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~li~~~~~~~ 90 (489)
+++|+|||||+|||+||+.|.+.+. .+.+|+|+|+++..+
T Consensus 1 m~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 1 MKTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 3579999999999999999998742 134899999998764
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.4e-06 Score=89.14 Aligned_cols=117 Identities=22% Similarity=0.266 Sum_probs=29.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-----CCcc---------c----cCCCCCC---CC-CC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-----ALTK---------G----YLFPLDK---KP-AR 110 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-----~l~~---------~----~~~~~~~---~~-~~ 110 (489)
||||||||+||++||..+++.|. +|+|||+.+....... .... + +...... .. ..
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~---~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~ 77 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGA---KVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQED 77 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS----EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST----------
T ss_pred CEEEECccHHHHHHHHHHHHCCC---EEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhccccccc
Confidence 89999999999999999999987 7999999987542110 0000 0 0000000 00 00
Q ss_pred CCCC---ccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC---EEEeCC---CeEEeeCcEEecCCC
Q 011267 111 LPGF---HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNS---GKLLKYGSLIVATGC 172 (489)
Q Consensus 111 ~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~---~v~~~~---g~~i~yd~lvlATG~ 172 (489)
..+. ...........+.+++.+.|+++++++.|..+..++. .|.+.+ ..++.++.+|-|||-
T Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 78 RYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD 148 (428)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000 0011111123345666778999999999999887763 334433 457899999999994
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=9.9e-06 Score=83.60 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=74.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+|+|||+|+.|+.+|..|++.|. +|+++++.+... +.. +. .+ .....+.+
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~--------~~---~~-----------~~~l~~~L 218 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGS---ETHLFVRGDAPL---RGF--------DP---DI-----------RETLVEEM 218 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCCc---ccc--------CH---HH-----------HHHHHHHH
Confidence 5789999999999999999999875 799999875421 000 00 00 12235667
Q ss_pred HHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++.+. ..+.+.+|+++.+|.+++|+|..|..
T Consensus 219 ~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~ 267 (450)
T PRK06116 219 EKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNT 267 (450)
T ss_pred HHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCC
Confidence 88999999999999997542 35677788889999999999988763
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.8e-06 Score=82.47 Aligned_cols=120 Identities=18% Similarity=0.292 Sum_probs=70.0
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC------C-CCCcc---cc-----CCCCC-C-CCCCCCCCc
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE------R-PALTK---GY-----LFPLD-K-KPARLPGFH 115 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~------~-~~l~~---~~-----~~~~~-~-~~~~~~~~~ 115 (489)
||+|||||+||+++|..|++.|+ +|+|+|+.+..... + -.++. .. +.+.- . ......+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 77 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL---KIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIH 77 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC---EEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEE
Confidence 79999999999999999999987 79999998753111 0 00100 00 00000 0 000000000
Q ss_pred cccC---------------CC--C---C----CCChhHHHHCC-cEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEe
Q 011267 116 TCVG---------------SG--G---E----RQTPEWYKEKG-IEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIV 168 (489)
Q Consensus 116 ~~~~---------------~~--~---~----~~~~~~~~~~~-i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvl 168 (489)
.... .. . . ..+.+.+.+.+ ++++.+++|+.++.... .+.+.+|.++.+|.+|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 78 VSDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVG 157 (385)
T ss_pred EEeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEE
Confidence 0000 00 0 0 00011223445 89999999999976554 45667888899999999
Q ss_pred cCCCCCC
Q 011267 169 ATGCTAS 175 (489)
Q Consensus 169 ATG~~~~ 175 (489)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9997643
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.5e-05 Score=81.08 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+.+||+|||||++|+++|..|++.|. +|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~---~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARAGV---DVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 457899999999999999999999887 7999998764
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1e-05 Score=83.30 Aligned_cols=96 Identities=26% Similarity=0.367 Sum_probs=70.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+ +
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~ll---~~~--------d~---~~-----------~~~l~~-l 216 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGV---RVTVVNRSGRLL---RHL--------DD---DI-----------SERFTE-L 216 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---ccc--------CH---HH-----------HHHHHH-H
Confidence 5789999999999999999999875 799999876421 000 00 00 001112 2
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+.++++++++++.+++.+.. .+.+.+|+++++|.+++|+|..|.
T Consensus 217 ~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 217 ASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 346799999999999986543 466678888999999999998876
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=80.65 Aligned_cols=119 Identities=19% Similarity=0.266 Sum_probs=69.4
Q ss_pred cEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCCCC-----C-CCCccc---c-----CCCCC-CCCCCCCCCcc
Q 011267 53 EFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAPYE-----R-PALTKG---Y-----LFPLD-KKPARLPGFHT 116 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~li~~~~~~~y~-----~-~~l~~~---~-----~~~~~-~~~~~~~~~~~ 116 (489)
||+|||||+||+++|..|+++| + +|+|+|+.+..... + ..++.. . +...- ...........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~---~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~ 77 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI---KIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHV 77 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc---eEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEE
Confidence 7999999999999999999998 7 79999998653221 0 000000 0 00000 00000000000
Q ss_pred ----------cc----CCC---C---CCCChh----HHHH-CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEec
Q 011267 117 ----------CV----GSG---G---ERQTPE----WYKE-KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (489)
Q Consensus 117 ----------~~----~~~---~---~~~~~~----~~~~-~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlA 169 (489)
.. +.. . ...+.+ .+.+ .+++++.+++|+++..+.. ++++.+|.++.+|.||.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 78 SDQGHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred EcCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence 00 000 0 000111 1233 3899999999999865443 567778888999999999
Q ss_pred CCCCC
Q 011267 170 TGCTA 174 (489)
Q Consensus 170 TG~~~ 174 (489)
.|...
T Consensus 158 dG~~S 162 (382)
T TIGR01984 158 DGANS 162 (382)
T ss_pred cCCCh
Confidence 99764
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=83.62 Aligned_cols=99 Identities=19% Similarity=0.306 Sum_probs=73.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+.
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~ 225 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAALGV---KVTLINTRDRLL---SFL--------DD---EI-----------SDALSYH 225 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEecCCCcC---CcC--------CH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999875421 000 00 00 1223456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.+++++.+++|+.++.... .+.+.+|.++.+|.+++|+|.+|..
T Consensus 226 l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~ 274 (461)
T PRK05249 226 LRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNT 274 (461)
T ss_pred HHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccc
Confidence 7788999999999999875433 4556778889999999999988763
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2e-05 Score=86.68 Aligned_cols=91 Identities=27% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||||+.|+.+|..|++.|++|+++++.+.+.. . .++.+......+.+++.||++++ ++.+ .+.
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~-gt~V-di~ 615 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEF-GCSP-DLT 615 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEe-Ccee-EEE
Confidence 467999999999999999999999999999998764321 1 12344555556778889999999 8776 222
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+++.+...+|.||+|||..+.
T Consensus 616 -----------le~L~~~gYDaVILATGA~~~ 636 (1019)
T PRK09853 616 -----------VEQLKNEGYDYVVVAIGADKN 636 (1019)
T ss_pred -----------hhhheeccCCEEEECcCCCCC
Confidence 223334568999999999854
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=81.01 Aligned_cols=59 Identities=20% Similarity=0.300 Sum_probs=44.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC--CC--cEEEEEeCCC---cEEEcCEEEEccCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS--DG--RVAAVKLEDG---STIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~--~~--~v~~v~~~~g---~~i~aD~vi~a~G~~ 307 (489)
...+.+.+.+.+++.|.++++ ++.|++|..++ ++ +++.|.+.+| +++++|.||+|+...
T Consensus 218 ~~~l~~pl~~~L~~~Gg~i~~-~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~ 283 (474)
T TIGR02732 218 DKYLTKPILEYIEARGGKFHL-RHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP 283 (474)
T ss_pred chhHHHHHHHHHHHCCCEEEC-CCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence 334556677888899999999 99999998643 23 3666777654 569999999999853
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00011 Score=76.79 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~a-D~vi~a~G~~p 308 (489)
...+...+.+.+++.|+++++ ++.++++..++++++.+|...+ ++ .+.+ +.||+|+|.-.
T Consensus 176 g~~~~~~L~~~~~~~gv~i~~-~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 176 GAMLMDPLAKRAAALGVQIRY-DTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred hHHHHHHHHHHHHhCCCEEEe-CCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 345677788888999999999 9999999865567887777643 32 5788 99999999644
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00013 Score=77.98 Aligned_cols=59 Identities=22% Similarity=0.200 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+..+...+.+..++.||+++. ++.++++..++++++.+|.. .+|+ .+.|+.||+|||--
T Consensus 165 G~~i~~~L~~~a~~~gv~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 228 (617)
T PTZ00139 165 GHAMLHTLYGQSLKYDCNFFI-EYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGGY 228 (617)
T ss_pred HHHHHHHHHHHHHhCCCEEEe-ceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCCC
Confidence 456677777878889999999 99999987545678887764 3564 57899999999854
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-05 Score=80.46 Aligned_cols=103 Identities=17% Similarity=0.141 Sum_probs=69.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh--------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~--------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
..+++++|||+|+.|+++|..|++.|.+|+++++.+.+... .++.+......+.+.+.|++++. ++.+..+
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~-~~~v~~~ 94 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKELEEAGVVFHT-RTKVCCG 94 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHHHHHHhCCeEEec-CcEEeec
Confidence 45789999999999999999999999999999988765321 12223333444556677999999 8887655
Q ss_pred Ee---CCCCcEE--EEEeCCCcEEEcCEEEEccCCC-CC
Q 011267 277 EA---GSDGRVA--AVKLEDGSTIDADTIVIGIGAK-PT 309 (489)
Q Consensus 277 ~~---~~~~~v~--~v~~~~g~~i~aD~vi~a~G~~-p~ 309 (489)
.. ..++... .+..+ +..+.+|.||+|+|.. |.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-~~~~~~d~lviAtGs~~~~ 132 (352)
T PRK12770 95 EPLHEEEGDEFVERIVSLE-ELVKKYDAVLIATGTWKSR 132 (352)
T ss_pred cccccccccccccccCCHH-HHHhhCCEEEEEeCCCCCC
Confidence 32 1111110 01111 2247899999999984 54
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.5e-05 Score=84.32 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.++||+||||||+|+++|..|++.|. +|+|||+.+.
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~---~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGV---PVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 356899999999999999999999987 6999999874
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.8e-06 Score=82.89 Aligned_cols=39 Identities=23% Similarity=0.446 Sum_probs=31.3
Q ss_pred CCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC 172 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~ 172 (489)
.+++++. .+|+++..++. -|.+.+|..+.+|.+|+|||.
T Consensus 109 ~nl~i~~-~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 109 PNLTIIQ-GEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp TTEEEEE-S-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred CCeEEEE-cccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 5899875 68999987665 467889999999999999997
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.5e-05 Score=80.82 Aligned_cols=60 Identities=17% Similarity=0.213 Sum_probs=47.7
Q ss_pred hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC--CC--cEEEEEe---CCCcEEEcCEEEEccCCC
Q 011267 247 FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS--DG--RVAAVKL---EDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 247 ~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~--~~--~v~~v~~---~~g~~i~aD~vi~a~G~~ 307 (489)
+...+.+.+.+.++++|.++++ ++.|++|..+. ++ ++.++.+ .+++++.+|.||++++..
T Consensus 293 ~~~~l~~pl~~~L~~~Gg~V~l-~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 293 PDVRLSGPIAKYITDRGGRFHL-RWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP 359 (569)
T ss_pred chHHHHHHHHHHHHHcCCEEEe-CCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence 4445778888999999999999 99999998652 23 3677887 344579999999999864
|
|
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.3e-05 Score=76.59 Aligned_cols=101 Identities=21% Similarity=0.263 Sum_probs=76.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------h----------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------Q---------------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~---------------------------------- 244 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+. +
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 85 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL 85 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence 479999999999999999999999999998764210 0
Q ss_pred --h-------hhC-------HHHHHHHHHHHH-hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 245 --R-------LFT-------PSLAQRYEQLYQ-QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 245 --~-------~~~-------~~~~~~l~~~l~-~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
. ..+ ..+.+.+.+.+. ..|+++++ +++++.++..+++.+..|++++|+++.+|+||-|.|..
T Consensus 86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~-~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~ 164 (388)
T PRK07045 86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRF-ETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGAR 164 (388)
T ss_pred EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEe-CCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCC
Confidence 0 000 122333444443 35799999 99999998766665567888999999999999999987
Q ss_pred CC
Q 011267 308 PT 309 (489)
Q Consensus 308 p~ 309 (489)
..
T Consensus 165 S~ 166 (388)
T PRK07045 165 SM 166 (388)
T ss_pred hH
Confidence 64
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00015 Score=77.22 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+.+++.||+++. ++.++++..+++ +++.++.. .+|+ .+.|+.||+|||...
T Consensus 139 G~~i~~~L~~~~~~~gv~i~~-~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 139 GHMILQTLYQNCVKHGVEFFN-EFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred HHHHHHHHHHHHHhcCCEEEe-CCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence 356677788888889999999 999999875442 67777765 3554 578999999999754
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.4e-05 Score=78.06 Aligned_cols=98 Identities=26% Similarity=0.320 Sum_probs=73.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-hhh----------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---------------------------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-~~~---------------------------------------- 246 (489)
-.|+|||+|+.|+.+|..|++.|.+|.++++.+... ++.
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 479999999999999999999999999998764211 000
Q ss_pred ---hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 247 ---FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 247 ---~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
....+.+.+.+.+.+.|++++. .+|++++..++ . ..|.+++|+++.||.||.|+|..+.
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~--~~V~~I~~~~~-~-~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQ--AKVKKVVHEES-K-SLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEe--eEEEEEEEcCC-e-EEEEECCCCEEEcCEEEECcCCCcC
Confidence 0112334555666778999865 68999985433 3 3688899989999999999998764
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.2e-05 Score=79.85 Aligned_cols=99 Identities=19% Similarity=0.339 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
.-+.+++|||||+-|+..|..+++.|- +||||++.+.. +...++.. .....+
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~---~VTiie~~~~i-----------Lp~~D~ei--------------~~~~~~ 222 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGS---KVTVVERGDRI-----------LPGEDPEI--------------SKELTK 222 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCC-----------CCcCCHHH--------------HHHHHH
Confidence 446789999999999999999999976 79999988753 11111111 122455
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCe--EEeeCcEEecCCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK--LLKYGSLIVATGCTAS 175 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~--~i~yd~lvlATG~~~~ 175 (489)
.+++.++.++.++++..+..... .+.+++|. ++.+|++++|+|-.|+
T Consensus 223 ~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn 273 (454)
T COG1249 223 QLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPN 273 (454)
T ss_pred HHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccC
Confidence 66777899999999999876554 56677776 6889999999998776
|
|
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.5e-05 Score=82.56 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=71.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|+|||||+.|+.+|..|++.|. +|+|+++.+...- .. +. .+ .....+.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~---~Vtli~~~~~~l~---~~--------~~---~~-----------~~~l~~~l 222 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGS---EVTVIERGPRLLP---RE--------DE---DV-----------AAAVREIL 222 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCCCCc---cc--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999875 7999998764210 00 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEe---CCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLIT---NSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~---~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++++++|.+++.+.. .+.+ .++.++.+|.+|+|+|..|..
T Consensus 223 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~ 273 (463)
T PRK06370 223 EREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNT 273 (463)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCC
Confidence 788999999999999986543 3333 234579999999999998863
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=82.61 Aligned_cols=98 Identities=22% Similarity=0.311 Sum_probs=71.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|++..+... |.. +. .+ .....+.+
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 223 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGV---DVTIVEFLDRAL---PNE--------DA---EV-----------SKEIAKQY 223 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecCCCcC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 799998754320 000 00 00 12235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeC--CC--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITN--SG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~--~g--~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++++++|.+++.+... +.+. +| .++++|.+++|+|..|..
T Consensus 224 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~ 275 (466)
T PRK07818 224 KKLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRV 275 (466)
T ss_pred HHCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCC
Confidence 8899999999999999865543 3333 56 469999999999988763
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=5.4e-05 Score=78.65 Aligned_cols=108 Identities=24% Similarity=0.374 Sum_probs=79.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---hh--------------------h------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---QR--------------------L------------------ 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---~~--------------------~------------------ 246 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+... ++ .
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~ 83 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD 83 (488)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence 579999999999999999999999999999763210 00 0
Q ss_pred ---h-----------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch
Q 011267 247 ---F-----------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312 (489)
Q Consensus 247 ---~-----------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~ 312 (489)
+ -..+.+.+.+.+++.|+++++ ++++++++.++++ + .+++.+|+++.+|.||.|.|..+..
T Consensus 84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~-~~~v~~v~~~~~~-v-~v~~~~g~~i~a~~vVgADG~~S~v-- 158 (488)
T PRK06834 84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYR-GREVTGFAQDDTG-V-DVELSDGRTLRAQYLVGCDGGRSLV-- 158 (488)
T ss_pred cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEcCCe-E-EEEECCCCEEEeCEEEEecCCCCCc--
Confidence 0 012334455667778999999 9999999865443 3 4677788889999999999998753
Q ss_pred hhhcCCee
Q 011267 313 FERVGLNS 320 (489)
Q Consensus 313 ~~~~gl~~ 320 (489)
-+.+|+..
T Consensus 159 R~~lgi~~ 166 (488)
T PRK06834 159 RKAAGIDF 166 (488)
T ss_pred HhhcCCCC
Confidence 34445443
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.3e-05 Score=82.39 Aligned_cols=42 Identities=19% Similarity=0.308 Sum_probs=34.6
Q ss_pred CcEEEeCCcEEEEeC---------CCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 134 GIEMIYQDPVTSIDI---------EKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 134 ~i~~~~~~~V~~id~---------~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++++.+++|++++. +.-++++.+|+++.+|.||-|-|....
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S~ 184 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNSN 184 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCCh
Confidence 489999999999863 223677889999999999999998754
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.4e-05 Score=77.66 Aligned_cols=38 Identities=21% Similarity=0.361 Sum_probs=32.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||+|||||+||++||+.|++.. +.+|+|||+....
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~--g~kV~viEk~~~~ 128 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNP--NVKVAIIEQSVSP 128 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcC--CCeEEEEecCccc
Confidence 3679999999999999999999752 3379999997654
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.4e-05 Score=81.01 Aligned_cols=41 Identities=15% Similarity=0.196 Sum_probs=34.3
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEA 87 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~ 87 (489)
|..+.+||+||||||+|+++|..|++.|. ...+|+|+|+.+
T Consensus 7 ~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 45567899999999999999999999873 124799999974
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.5e-05 Score=82.39 Aligned_cols=90 Identities=22% Similarity=0.305 Sum_probs=70.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|+.|+++|..|++.|.+|+++++.+.+. +. .++.++.....+.+++.||++++ ++.+..
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~-~~~v~~-- 215 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRT-NTEVGR-- 215 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEe-CCEECC--
Confidence 46899999999999999999999999999999887642 11 13557777778889999999999 876521
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.+.+++. .+.+|.||+|+|..
T Consensus 216 --------~v~~~~~-~~~~d~vvlAtGa~ 236 (457)
T PRK11749 216 --------DITLDEL-RAGYDAVFIGTGAG 236 (457)
T ss_pred --------ccCHHHH-HhhCCEEEEccCCC
Confidence 1223333 37899999999986
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.03 E-value=2e-05 Score=81.16 Aligned_cols=98 Identities=18% Similarity=0.215 Sum_probs=73.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+||++.+... +.+.. .+ .....+.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~il---~~~d~-----------~~-----------~~~~~~~l 217 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGS---ETHLVIRHERVL---RSFDS-----------MI-----------SETITEEY 217 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCCC---cccCH-----------HH-----------HHHHHHHH
Confidence 5799999999999999999999875 799999875421 00000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC---CEEEeCCC-eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSG-KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~---~~v~~~~g-~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++.+.+++.+. ..+.+.+| ..+.+|.+++|+|..|..
T Consensus 218 ~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~ 267 (450)
T TIGR01421 218 EKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNT 267 (450)
T ss_pred HHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCc
Confidence 78899999999999997542 24666677 579999999999988763
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.5e-05 Score=82.56 Aligned_cols=98 Identities=19% Similarity=0.337 Sum_probs=71.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||+|+.|+.+|..|++.|. +|+|+++.+... +.. +. .+ .....+.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~l~~~l 217 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGS---EVTILQRSDRLL---PRE--------EP---EI-----------SAAVEEAL 217 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCcCC---Ccc--------CH---HH-----------HHHHHHHH
Confidence 4789999999999999999999875 799999875421 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeC---CCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~---~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++++++|..++.+.. .+.+. ++.++++|.+++|+|..|..
T Consensus 218 ~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~ 268 (463)
T TIGR02053 218 AEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNT 268 (463)
T ss_pred HHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCC
Confidence 788999999998999876543 34432 23679999999999998764
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=82.11 Aligned_cols=98 Identities=15% Similarity=0.295 Sum_probs=73.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||+|..|+.+|..|++.|. +|+++++.+... ...+.. + .....+.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtli~~~~~~l-----------~~~d~~---~-----------~~~l~~~L 228 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGV---KVTLVSSRDRVL-----------PGEDAD---A-----------AEVLEEVF 228 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCcCC-----------CCCCHH---H-----------HHHHHHHH
Confidence 4689999999999999999999875 799999765421 000000 0 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++++.+++.... .+.+.+|+++++|.+++|+|..|..
T Consensus 229 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~ 276 (466)
T PRK07845 229 ARRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNT 276 (466)
T ss_pred HHCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCC
Confidence 889999999999999964333 4566788889999999999998864
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.3e-05 Score=81.06 Aligned_cols=32 Identities=22% Similarity=0.526 Sum_probs=30.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+||+||||||||++||+.|++.|+ +|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~---~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGI---ETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 699999999999999999999987 69999997
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.7e-05 Score=82.33 Aligned_cols=98 Identities=14% Similarity=0.286 Sum_probs=71.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|+|||+|+.|+.+|..|++.|. +|+|+++.+.+. +.. +. .+ .....+.+
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~l 234 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGA---EVTILEALPAFL---AAA--------DE---QV-----------AKEAAKAF 234 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCccC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4799999999999999999999875 799999876421 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCC--C--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~--g--~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++.+.. .+.+.+ | .++++|.+++|+|..|..
T Consensus 235 ~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~ 286 (475)
T PRK06327 235 TKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNT 286 (475)
T ss_pred HHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCC
Confidence 788999999999999986544 334333 3 469999999999998763
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.6e-05 Score=72.98 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=71.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC---cc--------hh----hhhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQ----RLFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~---~~--------l~----~~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
..++++|||+|+.|+.+|..+.++|.++++++... .+ ++ ....+.+.+.+.+.....++++.. +
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 83 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF-D 83 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEe-e
Confidence 46789999999999999999999999998886321 10 01 112345567777888888888877 4
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.++.++.. ++. ..+..++ ..+.+|.||+|+|..|+.
T Consensus 84 -~v~~v~~~-~~~-~~v~~~~-~~~~~d~vilAtG~~~~~ 119 (321)
T PRK10262 84 -HINKVDLQ-NRP-FRLTGDS-GEYTCDALIIATGASARY 119 (321)
T ss_pred -EEEEEEec-CCe-EEEEecC-CEEEECEEEECCCCCCCC
Confidence 57777643 222 2344333 378999999999999863
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00029 Score=68.13 Aligned_cols=97 Identities=23% Similarity=0.386 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCC---------------cchhhhhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPEN---------------HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~---------------~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
..++|||+|+.|+-+|-.+.+.+.+ +.+++... .+-.....+++.+.+.+..+..|+++.. .
T Consensus 4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~--~ 81 (305)
T COG0492 4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE--D 81 (305)
T ss_pred eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE--E
Confidence 4689999999999999999999988 44544421 0111134578888888888889999887 7
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 272 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.|.+++..++ ...|.+++|+ +.|+.||+|+|..+.
T Consensus 82 ~v~~v~~~~~--~F~v~t~~~~-~~ak~vIiAtG~~~~ 116 (305)
T COG0492 82 EVEKVELEGG--PFKVKTDKGT-YEAKAVIIATGAGAR 116 (305)
T ss_pred EEEEEeecCc--eEEEEECCCe-EEEeEEEECcCCccc
Confidence 7888874332 5678888887 999999999999876
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.9e-05 Score=87.78 Aligned_cols=93 Identities=24% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+++.. ..++.++.+...+.+++.||+|++ |+.+-.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~-n~~vG~-- 381 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVK-NFVVGK-- 381 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEE-eEEecc--
Confidence 478999999999999999999999999999998764321 113556777777888999999999 765421
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC-CC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK-PT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~-p~ 309 (489)
.+.+++.....+|.|++|+|.. |.
T Consensus 382 --------dit~~~l~~~~yDAV~LAtGA~~pr 406 (944)
T PRK12779 382 --------TATLEDLKAAGFWKIFVGTGAGLPT 406 (944)
T ss_pred --------EEeHHHhccccCCEEEEeCCCCCCC
Confidence 2555665556799999999984 54
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=77.19 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc-EE-EcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS-TI-DADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~-~i-~aD~vi~a~G~~p~ 309 (489)
+..+...+.+..++.|++++. ++.++++..++++++.+|... +|+ ++ .++.||+|+|--..
T Consensus 213 g~~l~~~L~~~a~~~Gv~i~~-~t~v~~Li~~~~g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 213 GTALTGRLLRSADDLGVDLRV-STSATSLTTDKNGRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred HHHHHHHHHHHHHHCCCEEEc-CCEEEEEEECCCCcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 445666777888889999999 999999976556788888653 343 23 45899999986544
|
|
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=98.00 E-value=9.7e-05 Score=77.30 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=34.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~~~ 90 (489)
..++||+|||||++||+||+.|.+. |. +|+|+|+++..+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~---~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGV---NVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCC---CEEEEecCCCCC
Confidence 4557899999999999999999998 76 799999998764
|
|
| >KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.8e-05 Score=74.64 Aligned_cols=65 Identities=22% Similarity=0.325 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEe-CCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEA-GSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~-~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
.......++..+++.|+.|+. +..|+.++- ++++..+.|.+.+|..+.++.+|+++|..-+ .+|.
T Consensus 152 a~kslk~~~~~~~~~G~i~~d-g~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~-klL~ 217 (399)
T KOG2820|consen 152 AAKSLKALQDKARELGVIFRD-GEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWIN-KLLP 217 (399)
T ss_pred HHHHHHHHHHHHHHcCeEEec-CcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHH-hhcC
Confidence 346667899999999999999 999888763 2345566899999999999999999998765 4444
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.99 E-value=6.9e-05 Score=75.90 Aligned_cols=109 Identities=27% Similarity=0.353 Sum_probs=80.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------hh-----------------h---------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------LQ-----------------R--------- 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------l~-----------------~--------- 245 (489)
...+|+|||||+.|+-+|..|++.|.+|+++++.+.. .+ .
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRMR 84 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEEE
Confidence 3457999999999999999999999999999975310 00 0
Q ss_pred ----------hh---------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 246 ----------LF---------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 246 ----------~~---------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
.+ ...+.+.+.+.+++.|++++. +++|++++.++ +.+ .+++++|+++.+|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~a~~v 161 (392)
T PRK08773 85 VWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHC-PARVVALEQDA-DRV-RLRLDDGRRLEAALA 161 (392)
T ss_pred EEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEc-CCeEEEEEecC-CeE-EEEECCCCEEEeCEE
Confidence 00 022344566667778999999 99999998543 333 477888889999999
Q ss_pred EEccCCCCCCchhhhcCCe
Q 011267 301 VIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~ 319 (489)
|.|.|..+. +.+.+++.
T Consensus 162 V~AdG~~S~--vr~~~g~~ 178 (392)
T PRK08773 162 IAADGAAST--LRELAGLP 178 (392)
T ss_pred EEecCCCch--HHHhhcCC
Confidence 999999874 34444443
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00011 Score=78.44 Aligned_cols=67 Identities=15% Similarity=0.153 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC-CCcEEEEEe---CCCc--EEEcCEEEEccCCCCCCchhhhc
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS-DGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
+..+...+.+..++.|++++. ++.|+++..++ ++++..|.. .+++ ++.+|.||+|+|.... .+++.+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~-~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~-~l~~~~ 303 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLN-YAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCD-EVRKMA 303 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEe-ccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHH-HHHHhc
Confidence 456777888889999999999 99999997654 466666665 2343 5899999999998764 444444
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.2e-05 Score=81.80 Aligned_cols=98 Identities=17% Similarity=0.275 Sum_probs=73.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+|+++.+.. . +.+ +. .+ .....+.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~~-l--~~~--------d~---~~-----------~~~l~~~l 254 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGA---TVDLFFRKELP-L--RGF--------DD---EM-----------RAVVARNL 254 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEecCCc-C--ccc--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 79999976531 0 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|.+++.+. ..+.+.+|.++++|.+++|+|..|..
T Consensus 255 ~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 302 (499)
T PLN02507 255 EGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNT 302 (499)
T ss_pred HhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCC
Confidence 88899999999999997533 34666778889999999999988763
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=2e-05 Score=80.08 Aligned_cols=98 Identities=17% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+.+|..+++.|. +|++++..+...-. ++. ..+ .....+.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~---~v~l~e~~~~~~~~-------~~~------~~~-----------~~~~~~~l 188 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGK---KVTLIEAADRLGGQ-------LLD------PEV-----------AEELAELL 188 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcccccchh-------hhh------HHH-----------HHHHHHHH
Confidence 5899999999999999999999986 79999988753211 000 000 12346778
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE-----EEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~-----v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++++++++++..+..++...+. +...++..+++|.+++++|.+|.
T Consensus 189 ~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 189 EKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred HHCCcEEEeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 8899999999999999987643 57778888999999999999884
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.4e-05 Score=75.09 Aligned_cols=100 Identities=30% Similarity=0.377 Sum_probs=77.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccchh----------------h------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQ----------------R------------------------ 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~l~----------------~------------------------ 245 (489)
...|+|||||+.|+-+|..|++.|.+|+++++. ..+.+ +
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 357999999999999999999999999999986 11100 0
Q ss_pred -------------------hhCHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeC-CCcEEEcCEEEEcc
Q 011267 246 -------------------LFTPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLE-DGSTIDADTIVIGI 304 (489)
Q Consensus 246 -------------------~~~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~~i~aD~vi~a~ 304 (489)
.--..+.+.+.+.+.+.+ |+++. +++|+.++.++ +.+. ++++ +|++++||+||-|-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~-~~~v~~~~~~~-~~v~-v~l~~dG~~~~a~llVgAD 158 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRF-GAEVEAVEQDG-DGVT-VTLSFDGETLDADLLVGAD 158 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEc-CceEEEEEEcC-CceE-EEEcCCCcEEecCEEEECC
Confidence 001245566777777766 99999 99999998654 4554 7777 99999999999999
Q ss_pred CCCCC
Q 011267 305 GAKPT 309 (489)
Q Consensus 305 G~~p~ 309 (489)
|....
T Consensus 159 G~~S~ 163 (387)
T COG0654 159 GANSA 163 (387)
T ss_pred CCchH
Confidence 97553
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.5e-05 Score=79.12 Aligned_cols=35 Identities=14% Similarity=0.292 Sum_probs=32.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~---~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGI---DSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCC---CEEEEEcCCc
Confidence 5799999999999999999999987 6999999874
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00047 Score=73.44 Aligned_cols=60 Identities=22% Similarity=0.241 Sum_probs=46.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+...+.|++++. ++.++++..++++++.+|.. .+|+ .+.++.||+|+|...
T Consensus 147 G~~l~~~L~~~~~~~gi~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 211 (591)
T PRK07057 147 GHALLHTLYQQNVAAKTQFFV-EWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGGAG 211 (591)
T ss_pred hHHHHHHHHHHHHhcCCEEEe-CcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCCcc
Confidence 445666777777888999999 99999988655677877765 2454 578999999999754
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.8e-05 Score=77.05 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=33.3
Q ss_pred CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 134 ~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+..++.+++|++++.... ++.+.+|.++.+|.||.|.|....
T Consensus 117 ~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 117 EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCccHH
Confidence 456778899999976443 567788889999999999997653
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.7e-05 Score=78.60 Aligned_cols=65 Identities=20% Similarity=0.254 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEccCCCCCCchhhhc
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
+..+.........++|-+++. .++|+.+..+ ++ +.+|+..|.+ ++.++.||.|+|.... ++++..
T Consensus 163 daRLv~~~a~~A~~~Ga~il~-~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d-~i~~~~ 232 (532)
T COG0578 163 DARLVAANARDAAEHGAEILT-YTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVD-EILEMA 232 (532)
T ss_pred hHHHHHHHHHHHHhcccchhh-cceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHH-HHHHhh
Confidence 445666666778889999999 9999999864 34 7788877643 5899999999998876 555544
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=2.9e-05 Score=80.92 Aligned_cols=97 Identities=15% Similarity=0.203 Sum_probs=71.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++... . +.+.. . + .....+.+
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~--l--~~~d~--------~---~-----------~~~l~~~l 232 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGF---DVTVAVRSIP--L--RGFDR--------Q---C-----------SEKVVEYM 232 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCcc--c--ccCCH--------H---H-----------HHHHHHHH
Confidence 4589999999999999999999875 7999975321 1 11100 0 0 02345677
Q ss_pred HHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.++.+..+.... ..+.+.+|+++.+|.+++|+|..|..
T Consensus 233 ~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~ 280 (499)
T PTZ00052 233 KEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDI 280 (499)
T ss_pred HHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCc
Confidence 88899999998888876533 34666788889999999999988763
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.4e-05 Score=78.14 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=31.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~---~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGI---QTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 589999999999999999999987 6999998753
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=9e-05 Score=77.46 Aligned_cols=101 Identities=23% Similarity=0.349 Sum_probs=73.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------h--------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R-------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------~-------------------- 245 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 82 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL 82 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence 4699999999999999999999999999997632100 0
Q ss_pred -------------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEccCCCCC
Q 011267 246 -------------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 -------------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~~p~ 309 (489)
.+ -..+.+.+.+.+++.|++++. ++++++++.++++....+...+| +++.+|.||.|.|....
T Consensus 83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~-~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~ 160 (493)
T PRK08244 83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFR-GAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSI 160 (493)
T ss_pred CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEe-CCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChH
Confidence 00 013445566677788999999 99999998654432222222355 47999999999999764
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=8.8e-05 Score=75.89 Aligned_cols=107 Identities=21% Similarity=0.370 Sum_probs=77.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------------hhhh--------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------------QRLF-------------------------- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------------~~~~-------------------------- 247 (489)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+. ...+
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSA 85 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCCCc
Confidence 579999999999999999999999999998763210 0000
Q ss_pred ---------------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 248 ---------------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 248 ---------------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
-..+.+++.+..++.|++++. ++.|+++... ++.+..+. .+|+++.||.||.|+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~-~~~V~~i~~~-~g~v~~v~-~~g~~i~A~~VI~A~G~ 162 (428)
T PRK10157 86 MTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLIT-GIRVDNLVQR-DGKVVGVE-ADGDVIEAKTVILADGV 162 (428)
T ss_pred eeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEEC-CCEEEEEEEe-CCEEEEEE-cCCcEEECCEEEEEeCC
Confidence 011223466667778999999 9999998754 45554444 56678999999999998
Q ss_pred CCCCchhhhcCCe
Q 011267 307 KPTVSPFERVGLN 319 (489)
Q Consensus 307 ~p~~~~~~~~gl~ 319 (489)
.. .+.+.+|+.
T Consensus 163 ~s--~l~~~lgl~ 173 (428)
T PRK10157 163 NS--ILAEKLGMA 173 (428)
T ss_pred CH--HHHHHcCCC
Confidence 54 455565554
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.2e-05 Score=79.73 Aligned_cols=97 Identities=27% Similarity=0.372 Sum_probs=70.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|++|++.+... +.+.. .+ .....+ +
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~---~Vtli~~~~~ll---~~~d~-----------~~-----------~~~l~~-~ 219 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGT---RVTIVNRSTKLL---RHLDE-----------DI-----------SDRFTE-I 219 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCccc---cccCH-----------HH-----------HHHHHH-H
Confidence 4689999999999999999999875 799999875421 00000 00 011122 2
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
.+.+++++++++|.+++.+.. .+.+.+|+++++|.+++|+|.+|..
T Consensus 220 ~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~ 267 (452)
T TIGR03452 220 AKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred HhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCC
Confidence 346899999999999986543 4556678889999999999988763
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00027 Score=75.10 Aligned_cols=60 Identities=20% Similarity=0.199 Sum_probs=46.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+..++.||+++. ++.++++..++++++.++.. .+|+ .+.++.||+|||--.
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~~ 206 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFS-EWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGGAG 206 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEe-CcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence 456666777777788999999 99999998655688888765 3554 578999999999643
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=77.93 Aligned_cols=97 Identities=29% Similarity=0.430 Sum_probs=74.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------hh---hhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------QR---LFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------~~---~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..|+|||||+.|+.+|..+++.|.+|+++++.. +. +. .....+.+.+.+.+++.|++++ ++.
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~--~~~ 81 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-FGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFL--QAE 81 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-CCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEe--ccE
Confidence 579999999999999999999999999999753 11 00 0124667778888888999985 478
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
|+.+... +....+.+.++ .+.+|.+|+|+|.+|..
T Consensus 82 V~~i~~~--~~~~~V~~~~g-~~~a~~lVlATGa~p~~ 116 (555)
T TIGR03143 82 VLDVDFD--GDIKTIKTARG-DYKTLAVLIATGASPRK 116 (555)
T ss_pred EEEEEec--CCEEEEEecCC-EEEEeEEEECCCCccCC
Confidence 8888743 23335666665 68999999999999864
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=74.96 Aligned_cols=106 Identities=26% Similarity=0.394 Sum_probs=78.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcc------------------hhh-----------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHL------------------LQR----------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~------------------l~~----------------------- 245 (489)
+|+|||||+.|+-+|..|++.| .+|+++++.+.. +.+
T Consensus 3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (403)
T PRK07333 3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR 82 (403)
T ss_pred CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence 5899999999999999999985 899999875320 000
Q ss_pred ----------h---------------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 246 ----------L---------------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 246 ----------~---------------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
. ....+.+.+.+.+++.|++++. +++|++++.++ +.+ .+.+++|+++.||.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~v 159 (403)
T PRK07333 83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLRE-ATSVTDFETRD-EGV-TVTLSDGSVLEARLL 159 (403)
T ss_pred CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEcC-CEE-EEEECCCCEEEeCEE
Confidence 0 0123445566777778999999 99999997543 333 577888889999999
Q ss_pred EEccCCCCCCchhhhcCCe
Q 011267 301 VIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~ 319 (489)
|.|.|..+. +.+.+++.
T Consensus 160 I~AdG~~S~--vr~~~g~~ 176 (403)
T PRK07333 160 VAADGARSK--LRELAGIK 176 (403)
T ss_pred EEcCCCChH--HHHHcCCC
Confidence 999998764 44555554
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.3e-05 Score=79.22 Aligned_cols=35 Identities=14% Similarity=0.335 Sum_probs=32.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+||+|||||++|+++|..|++.|+ +|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~---~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCC---CEEEEECCCC
Confidence 4799999999999999999999988 6999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0001 Score=74.75 Aligned_cols=101 Identities=18% Similarity=0.242 Sum_probs=74.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------h------------h-----
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R------------L----- 246 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------~------------~----- 246 (489)
...+|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. . .
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD 82 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccccccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence 356899999999999999999999999999987643200 0 0
Q ss_pred --------h----------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 247 --------F----------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 --------~----------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
+ -..+.+.+.+.+.+. +++++. ++.++++..++ +.+ .+.+.+|+++.+|.||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV 159 (396)
T PRK08163 83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRT-STHVVGIEQDG-DGV-TVFDQQGNRWTGDALI 159 (396)
T ss_pred CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEe-CCEEEEEecCC-Cce-EEEEcCCCEEecCEEE
Confidence 0 011223344445455 499999 99999998543 333 4778889899999999
Q ss_pred EccCCCCC
Q 011267 302 IGIGAKPT 309 (489)
Q Consensus 302 ~a~G~~p~ 309 (489)
.|.|....
T Consensus 160 ~AdG~~S~ 167 (396)
T PRK08163 160 GCDGVKSV 167 (396)
T ss_pred ECCCcChH
Confidence 99998764
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3.1e-05 Score=82.30 Aligned_cols=96 Identities=20% Similarity=0.315 Sum_probs=70.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+||++...++. . +. .+ .....+.+
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtli~~~~~l~~----~--------d~---~~-----------~~~l~~~l 320 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGS---KVTILARSTLFFR----E--------DP---AI-----------GEAVTAAF 320 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCccccc----c--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 7999987432110 0 00 00 02235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.++++..++.+... +.+.++ ++.+|.+++|+|..|..
T Consensus 321 ~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~ 367 (561)
T PRK13748 321 RAEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNT 367 (561)
T ss_pred HHCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCC
Confidence 8899999999999998765443 334444 69999999999998864
|
|
| >KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=5e-05 Score=70.96 Aligned_cols=68 Identities=9% Similarity=0.113 Sum_probs=47.6
Q ss_pred HHHHHHHHHhcCcEEEEcCceEEEEEeCCCC---cEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec
Q 011267 252 AQRYEQLYQQNGVKFVKVGASIKNLEAGSDG---RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS 321 (489)
Q Consensus 252 ~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~---~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~ 321 (489)
...+.+.++..|-++++ |-+++.+..+.++ ....|.-..++++.+..+|-|+|...+ ...+.+|++.+
T Consensus 199 ~ls~~edF~~~gg~i~~-n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sd-r~aa~sgc~~d 269 (453)
T KOG2665|consen 199 TLSFGEDFDFMGGRIYT-NFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSD-RCAALSGCELD 269 (453)
T ss_pred HHHHHHHHHHhcccccc-cceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHh-HHHHHhCCCCC
Confidence 33455558888999999 9999998755443 222233334678999999999999875 55666676654
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00028 Score=75.47 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+..+...+.+..++.||+++. ++.+.++..++++++.++.. .+|+ .+.++.||+|||--.
T Consensus 186 G~~i~~~L~~~a~~~gv~i~~-~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~g 250 (635)
T PLN00128 186 GHAMLHTLYGQAMKHNTQFFV-EYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGGYG 250 (635)
T ss_pred HHHHHHHHHHHHHhCCCEEEE-eeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCCCc
Confidence 445666777777788999999 99999987554678887765 3454 578999999999643
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=97.92 E-value=1.4e-05 Score=58.78 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.2
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
|||||++||++|..|++.|+ +|+|+|+.+...
T Consensus 1 IiGaG~sGl~aA~~L~~~g~---~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY---RVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS---EEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCC---cEEEEecCcccC
Confidence 89999999999999999976 899999988753
|
... |
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.4e-05 Score=79.91 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=70.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+||++.+... +.+ +. .+ .....+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~---~Vtlie~~~~il---~~~--------d~---~~-----------~~~l~~~ 224 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGA---QVTVVEYLDRIC---PGT--------DT---ET-----------AKTLQKA 224 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEeCCCCCC---CCC--------CH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999765421 000 00 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeC---C--CeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---S--GKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~---~--g~~i~yd~lvlATG~~~~ 175 (489)
+++.+++++.+++|.++..+.. .+.+. + +.++++|.+++|+|..|.
T Consensus 225 l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 225 LTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred HHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 7788999999999999976432 23332 2 357999999999998875
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00032 Score=74.11 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+..+...+.+.+++.||++++ ++.++++..++++++.++.. .+|+ .+.|+.||+|||.-
T Consensus 133 G~~i~~~L~~~~~~~gv~i~~-~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 133 GHEMMMGLMEYLIKERIKILE-EVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHHhcCCCEEEe-CeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 456777788888889999999 99999987654444777653 4554 58999999999964
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=5.1e-05 Score=78.98 Aligned_cols=88 Identities=19% Similarity=0.262 Sum_probs=68.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|+|+|.+|+++|..|.++|.+|+++++.+. .....+.+.+++.||++++ +..+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~--------~~~~~~~~~l~~~gv~~~~-~~~~~----------- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDD--------ERHRALAAILEALGATVRL-GPGPT----------- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch--------hhhHHHHHHHHHcCCEEEE-CCCcc-----------
Confidence 467999999999999999999999999999987642 2233455668889999998 65332
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchh---hhcCCee
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPF---ERVGLNS 320 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~---~~~gl~~ 320 (489)
....+|+||+++|..|+.+++ ++.|++.
T Consensus 75 -------~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v 105 (480)
T PRK01438 75 -------LPEDTDLVVTSPGWRPDAPLLAAAADAGIPV 105 (480)
T ss_pred -------ccCCCCEEEECCCcCCCCHHHHHHHHCCCee
Confidence 124689999999999998874 3445544
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0001 Score=74.54 Aligned_cols=98 Identities=22% Similarity=0.231 Sum_probs=71.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh---------h----------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------R---------------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------~---------------------------------- 245 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+-. .
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGRRK 81 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCCEE
Confidence 689999999999999999999999999987642200 0
Q ss_pred -hhC-----------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 246 -LFT-----------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 246 -~~~-----------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.++ ..+.+.+.+.+ ..|+++++ +++|++++..+ +.+ .|.+++|+++.+|+||-|.|..
T Consensus 82 ~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~vIgADG~~ 157 (391)
T PRK07588 82 ADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIF-DDSIATIDEHR-DGV-RVTFERGTPRDFDLVIGADGLH 157 (391)
T ss_pred EEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEe-CCEEeEEEECC-CeE-EEEECCCCEEEeCEEEECCCCC
Confidence 000 01222222323 34799999 99999998653 344 4788999999999999999987
Q ss_pred CCC
Q 011267 308 PTV 310 (489)
Q Consensus 308 p~~ 310 (489)
..+
T Consensus 158 S~v 160 (391)
T PRK07588 158 SHV 160 (391)
T ss_pred ccc
Confidence 654
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00012 Score=75.33 Aligned_cols=58 Identities=31% Similarity=0.584 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+.|.+..++.||+++. + .|+++..++++.+..|++++|+++.||.+|=|+|++..
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~-g-~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~ 212 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIE-G-TVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSL 212 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEE-T--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-C
T ss_pred HHHHHHHHHHhcCCCEEEe-C-EEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccch
Confidence 4556677888889999998 6 57777777788899999999999999999999998653
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.91 E-value=2.6e-05 Score=78.38 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=30.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.||+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 1 ~~dV~IvGgG~~Gl~~A~~L~~~G~---~v~l~E~~~ 34 (374)
T PRK06617 1 MSNTVILGCGLSGMLTALSFAQKGI---KTTIFESKS 34 (374)
T ss_pred CccEEEECCCHHHHHHHHHHHcCCC---eEEEecCCC
Confidence 4689999999999999999999987 799999763
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=97.90 E-value=3.4e-05 Score=79.37 Aligned_cols=92 Identities=22% Similarity=0.235 Sum_probs=69.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
..++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.||+++. +..+..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~-~~~v~~-- 208 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRM-NFLVGK-- 208 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEe-CCccCC--
Confidence 35789999999999999999999999999999876441 1 124566667777788899999999 874411
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCC-CCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~-~p~ 309 (489)
.+.+++. ...+|.||+|+|. .|.
T Consensus 209 --------~v~~~~~-~~~yd~viiAtGa~~p~ 232 (449)
T TIGR01316 209 --------TATLEEL-FSQYDAVFIGTGAGLPK 232 (449)
T ss_pred --------cCCHHHH-HhhCCEEEEeCCCCCCC
Confidence 1333333 3468999999997 565
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00021 Score=74.32 Aligned_cols=108 Identities=18% Similarity=0.297 Sum_probs=77.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------h-------------------------------hh-
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------Q-------------------------------RL- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~-------------------------------~~- 246 (489)
..|+|||+|++|+-+|..|++.|.+|.++++.+.+. + +.
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i 85 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI 85 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence 479999999999999999999999999998763210 0 00
Q ss_pred ---------hC------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 247 ---------FT------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 247 ---------~~------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
+. ..+.+.+.+.+++.|++++. +++|++++.++++ + .+.+.+|+++.|+.||.|.|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~-~~~v~~l~~~~~~-v-~v~~~~g~~v~a~~vVgADG 162 (487)
T PRK07190 86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKR-NTSVVNIELNQAG-C-LTTLSNGERIQSRYVIGADG 162 (487)
T ss_pred eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEe-CCEEEEEEEcCCe-e-EEEECCCcEEEeCEEEECCC
Confidence 00 01223455566778999999 9999999865544 3 35567788999999999999
Q ss_pred CCCCCchhhhcCCee
Q 011267 306 AKPTVSPFERVGLNS 320 (489)
Q Consensus 306 ~~p~~~~~~~~gl~~ 320 (489)
.... .-+.+|+..
T Consensus 163 ~~S~--vR~~lgi~f 175 (487)
T PRK07190 163 SRSF--VRNHFNVPF 175 (487)
T ss_pred CCHH--HHHHcCCCc
Confidence 8652 334455543
|
|
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=3.9e-05 Score=78.97 Aligned_cols=98 Identities=18% Similarity=0.341 Sum_probs=71.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||+|+.|+.+|..|++.|. +|+|+++.+... |.. +. .+ .....+.
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------~~---~~-----------~~~l~~~ 208 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFANFGS---KVTILEAASLFL---PRE--------DR---DI-----------ADNIATI 208 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCC---CCc--------CH---HH-----------HHHHHHH
Confidence 34689999999999999999999875 799999865321 000 00 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCE--EEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQT--LITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~--v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.++++.+++.+... +.+.++ ++.+|.+++|+|..|..
T Consensus 209 l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~ 256 (441)
T PRK08010 209 LRDQGVDIILNAHVERISHHENQVQVHSEHA-QLAVDALLIASGRQPAT 256 (441)
T ss_pred HHhCCCEEEeCCEEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCC
Confidence 78889999999999999865543 334444 58999999999988763
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.89 E-value=4.5e-05 Score=79.18 Aligned_cols=97 Identities=13% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.... +.+.. .+ .....+.+
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~---~Vtli~~~~~l----~~~d~-----------~~-----------~~~l~~~L 230 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILL----RGFDQ-----------DC-----------ANKVGEHM 230 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCC---cEEEEEecccc----cccCH-----------HH-----------HHHHHHHH
Confidence 4579999999999999999999875 79999753211 10100 00 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCC---eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g---~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+..+..+..... .+.+.++ .++++|.+++|+|..|..
T Consensus 231 ~~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~ 281 (484)
T TIGR01438 231 EEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACT 281 (484)
T ss_pred HHcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCC
Confidence 888999999988888765332 4555555 379999999999988763
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=4.6e-05 Score=79.18 Aligned_cols=96 Identities=20% Similarity=0.359 Sum_probs=69.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+..|..|++.|. +|+|+++....+. . +. .+ .....+.+
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~l~~----~--------d~---~~-----------~~~l~~~L 238 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGS---RVTILARSTLLFR----E--------DP---LL-----------GETLTACF 238 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---EEEEEEcCCCCCc----c--------hH---HH-----------HHHHHHHH
Confidence 4689999999999999999999875 7999976421110 0 00 00 01235567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.+++++.+++|..++.+.. .+.+.++ ++.+|.+++|+|..|..
T Consensus 239 ~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~ 285 (479)
T PRK14727 239 EKEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANT 285 (479)
T ss_pred HhCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCc
Confidence 788999999999998875443 3444444 58999999999998763
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00015 Score=75.76 Aligned_cols=96 Identities=23% Similarity=0.381 Sum_probs=70.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-cc-----------------hh--h----------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-HL-----------------LQ--R---------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~-~~-----------------l~--~---------------------- 245 (489)
-.|+|||||+.|+++|..+++.|.+|.++++.. .+ .. .
T Consensus 5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~ln~ 84 (618)
T PRK05192 5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRMLNT 84 (618)
T ss_pred ceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeeccc
Confidence 469999999999999999999999999998762 11 00 0
Q ss_pred -----------hhCH-HHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 246 -----------LFTP-SLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 246 -----------~~~~-~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.++. .+...+.+.+++. |++++. ..|+++.. +++++.+|.+.+|..+.|+.||+|+|.
T Consensus 85 skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q--~~V~~Li~-e~grV~GV~t~dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 85 SKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQ--GEVEDLIV-ENGRVVGVVTQDGLEFRAKAVVLTTGT 155 (618)
T ss_pred CCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEE--eEEEEEEe-cCCEEEEEEECCCCEEECCEEEEeeCc
Confidence 0010 1223444555544 888865 67888764 456788899999999999999999994
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.87 E-value=5e-05 Score=78.77 Aligned_cols=102 Identities=18% Similarity=0.304 Sum_probs=71.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||||+.|+.+|..+........+|+|+++.+... +.+ +. .+ .....+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il---~~~--------d~---~~-----------~~~l~~~ 240 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL---RGF--------DS---TL-----------RKELTKQ 240 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc---ccc--------CH---HH-----------HHHHHHH
Confidence 35789999999999999987765411123899999775421 000 00 00 0223456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.+++++.++.+.+++... ..+.+.+|.++++|.+++|+|..|..
T Consensus 241 L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~ 290 (486)
T TIGR01423 241 LRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRT 290 (486)
T ss_pred HHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCc
Confidence 788999999999999987532 35666778889999999999988753
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=72.49 Aligned_cols=100 Identities=22% Similarity=0.212 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 244 (489)
++|+|||||+.|+.+|..|++.|.+|+++++.+.+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 4799999999999999999999999999997632100
Q ss_pred --hhhC-HHH------------HHHHHHHHH---hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 245 --RLFT-PSL------------AQRYEQLYQ---QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 245 --~~~~-~~~------------~~~l~~~l~---~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.... ... ...+.+.+. ..|+++++ +++|++++.+ ++.+ .+.+++|+++.+|+||-|-|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~~~~v~i~~-~~~v~~i~~~-~~~v-~v~~~dg~~~~adlvIgADG~ 158 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGATQPSVEYLF-DDSISTLQDD-GDSV-RVTFERAAAREFDLVIGADGL 158 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhccCCcEEEe-CCEEEEEEec-CCeE-EEEECCCCeEEeCEEEECCCC
Confidence 0000 000 112222222 36899999 9999999754 3333 588899999999999999998
Q ss_pred CCCC
Q 011267 307 KPTV 310 (489)
Q Consensus 307 ~p~~ 310 (489)
...+
T Consensus 159 ~S~v 162 (372)
T PRK05868 159 HSNV 162 (372)
T ss_pred CchH
Confidence 7653
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.9e-05 Score=79.31 Aligned_cols=92 Identities=17% Similarity=0.324 Sum_probs=69.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|+.|+.+|..|++.|.+|+++++.+.+. + ..++.++.....+.+++.|++++. ++.+..-
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~-~~~v~~~- 217 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL-NCEVGRD- 217 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC-CCEeCCc-
Confidence 46789999999999999999999999999999887541 1 113556666677888999999999 8866321
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+++ ....+|.||+|+|..+.
T Consensus 218 ---------~~~~~-~~~~~D~vilAtGa~~~ 239 (467)
T TIGR01318 218 ---------ISLDD-LLEDYDAVFLGVGTYRS 239 (467)
T ss_pred ---------cCHHH-HHhcCCEEEEEeCCCCC
Confidence 11111 12469999999999874
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00017 Score=75.06 Aligned_cols=98 Identities=22% Similarity=0.347 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------------ 245 (489)
-.|+|||+|+.|+.+|..+++.|.+|.++++...+...
T Consensus 109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~ 188 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR 188 (529)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence 46999999999999999999999999999864211000
Q ss_pred hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 246 LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
.....+.+.+.+.+.+.|+++ . ++.|+++...++ .+..+.+.+|+++.|+.||.|+|..+
T Consensus 189 V~R~~L~~~Ll~~a~~~GV~~-~-~~~V~~I~~~~~-~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 189 VSRTLLHEELLRRCVESGVSY-L-SSKVDRITEASD-GLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred EcHHHHHHHHHHHHHhcCCEE-E-eeEEEEEEEcCC-cEEEEEEcCCcEEECCEEEECCCcCh
Confidence 000123345556667789998 5 689999975433 33335667888999999999999876
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00017 Score=73.45 Aligned_cols=99 Identities=19% Similarity=0.345 Sum_probs=74.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc------------------------chh------h-----h------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH------------------------LLQ------R-----L------ 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~------------------------~l~------~-----~------ 246 (489)
..|+|||||+.|+-+|..|.+.|.+|+++++.+. ++. . .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~ 82 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSEM 82 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccceeE
Confidence 3699999999999999999999999999997641 000 0 0
Q ss_pred ------------h---------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCE
Q 011267 247 ------------F---------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299 (489)
Q Consensus 247 ------------~---------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~ 299 (489)
+ ...+.+.+.+.+++.|++++. ++++++++.++++ + .|.+.+|+++.||.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~~~-v-~v~~~~g~~~~a~~ 159 (405)
T PRK05714 83 QVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLA-NARLEQMRRSGDD-W-LLTLADGRQLRAPL 159 (405)
T ss_pred EEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEc-CCEEEEEEEcCCe-E-EEEECCCCEEEeCE
Confidence 0 001223444556677999999 9999999865443 3 47788898999999
Q ss_pred EEEccCCCCC
Q 011267 300 IVIGIGAKPT 309 (489)
Q Consensus 300 vi~a~G~~p~ 309 (489)
||.|.|....
T Consensus 160 vVgAdG~~S~ 169 (405)
T PRK05714 160 VVAADGANSA 169 (405)
T ss_pred EEEecCCCch
Confidence 9999998664
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=78.84 Aligned_cols=93 Identities=24% Similarity=0.315 Sum_probs=67.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCH-HHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTP-SLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~-~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
.+++++|||+|+.|+.+|..|+++|++|+++++.+.+. +. .++. .+.....+.+++.||++++ ++.+..
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~~gv~i~~-~~~v~~- 216 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIENIKKLGVKIET-NVVVGK- 216 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeeeecCCCccCCccHHHHHHHHHHHHcCCEEEc-CCEECC-
Confidence 46789999999999999999999999999999765431 11 0122 2556666788899999999 875521
Q ss_pred EeCCCCcEEEEEeCCC-cEEEcCEEEEccCC-CCC
Q 011267 277 EAGSDGRVAAVKLEDG-STIDADTIVIGIGA-KPT 309 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~-~p~ 309 (489)
.+.+++. +.+.+|.||+|+|. .|.
T Consensus 217 ---------~v~~~~~~~~~~~d~viiAtGa~~~~ 242 (464)
T PRK12831 217 ---------TVTIDELLEEEGFDAVFIGSGAGLPK 242 (464)
T ss_pred ---------cCCHHHHHhccCCCEEEEeCCCCCCC
Confidence 1223332 34579999999998 464
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00021 Score=75.95 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEc-CEEEEccCCCCC-Cchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDA-DTIVIGIGAKPT-VSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~a-D~vi~a~G~~p~-~~~~~~ 315 (489)
+..+...+.+.+++.|++++. ++.++++..+ ++++.+|...+ |+ ++.+ +.||+|+|.-.. .+++++
T Consensus 220 G~~l~~aL~~~~~~~Gv~i~~-~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~~n~em~~~ 290 (578)
T PRK12843 220 GNALIGRLLYSLRARGVRILT-QTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGFNRHPQLRRE 290 (578)
T ss_pred cHHHHHHHHHHHHhCCCEEEe-CCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCcccCHHHHHH
Confidence 556777888889999999999 9999998743 67888877654 33 4776 689999987644 344444
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.8e-05 Score=76.16 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~---~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGW---AVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCc
Confidence 689999999999999999999987 7999998765
|
|
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00026 Score=74.72 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=45.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEc-CEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDA-DTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~a-D~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.||++++ ++.++++.. ++++|.+|... +|+ .+.+ ..||+|+|--.+
T Consensus 216 G~~l~~~L~~~~~~~Gv~i~~-~t~v~~Li~-~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf~~ 279 (564)
T PRK12845 216 GQALAAGLFAGVLRAGIPIWT-ETSLVRLTD-DGGRVTGAVVDHRGREVTVTARRGVVLAAGGFDH 279 (564)
T ss_pred hHHHHHHHHHHHHHCCCEEEe-cCEeeEEEe-cCCEEEEEEEEECCcEEEEEcCCEEEEecCCccc
Confidence 567778888888999999999 999999885 46788887553 343 3556 579999986544
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.83 E-value=1.7e-05 Score=70.48 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..-||+||||||+||+||++|++.|. +|+|+|+...+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~---kV~i~E~~ls~ 65 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGL---KVAIFERKLSF 65 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCCc---eEEEEEeeccc
Confidence 35699999999999999999999977 69999998654
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.5e-05 Score=71.28 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=30.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||+||||||||++||+.|++.|+ +|+++|++...
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~---kV~v~E~~~~~ 52 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGL---KVAVIERKLSP 52 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS----EEEEESSSS-
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCC---eEEEEecCCCC
Confidence 46899999999999999999999987 69999997653
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00025 Score=74.25 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=73.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------------------------h--
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R-- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------------~-- 245 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 83 (502)
T PRK06184 4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV 83 (502)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence 4699999999999999999999999999997622100 0
Q ss_pred ---------------------hhC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCcEEEcCEE
Q 011267 246 ---------------------LFT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGSTIDADTI 300 (489)
Q Consensus 246 ---------------------~~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~aD~v 300 (489)
.++ ..+.+.+.+.+++.|+++++ ++++++++.++++ + .+.+ .+++++.||.|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~-~~~v~~i~~~~~~-v-~v~~~~~~~~~~i~a~~v 160 (502)
T PRK06184 84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEF-GCELVGFEQDADG-V-TARVAGPAGEETVRARYL 160 (502)
T ss_pred EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEe-CcEEEEEEEcCCc-E-EEEEEeCCCeEEEEeCEE
Confidence 000 12334566777778999999 9999999865444 3 3444 55678999999
Q ss_pred EEccCCCC
Q 011267 301 VIGIGAKP 308 (489)
Q Consensus 301 i~a~G~~p 308 (489)
|.|.|...
T Consensus 161 VgADG~~S 168 (502)
T PRK06184 161 VGADGGRS 168 (502)
T ss_pred EECCCCch
Confidence 99999765
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=3e-05 Score=79.58 Aligned_cols=39 Identities=21% Similarity=0.463 Sum_probs=34.4
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+..+++||+||||||||++||..|++.|+ +|+|+|+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~G~---~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKGGI---ETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhCCC---cEEEEecCCC
Confidence 34567999999999999999999999987 6999998753
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0002 Score=72.43 Aligned_cols=100 Identities=23% Similarity=0.365 Sum_probs=72.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh--------------------h--------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR--------------------L-------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~--------------------~-------------- 246 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+- .+ .
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 83 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL 83 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence 469999999999999999999999999999764210 00 0
Q ss_pred ---------hC---------------HHHHHHHHHHH-HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 247 ---------FT---------------PSLAQRYEQLY-QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 ---------~~---------------~~~~~~l~~~l-~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
++ ..+.+.+.+.+ +..|++++. ++++++++..++ .+ .|.+++|+++.||.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~-~~~v~~~~~~~~-~~-~v~~~~g~~~~a~~vI 160 (392)
T PRK09126 84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLT-GTRVTAVRTDDD-GA-QVTLANGRRLTARLLV 160 (392)
T ss_pred cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEc-CCeEEEEEEcCC-eE-EEEEcCCCEEEeCEEE
Confidence 00 00112222333 346899999 999999975433 33 5778889999999999
Q ss_pred EccCCCCCC
Q 011267 302 IGIGAKPTV 310 (489)
Q Consensus 302 ~a~G~~p~~ 310 (489)
.|.|..+..
T Consensus 161 ~AdG~~S~v 169 (392)
T PRK09126 161 AADSRFSAT 169 (392)
T ss_pred EeCCCCchh
Confidence 999987653
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.6e-05 Score=77.73 Aligned_cols=98 Identities=14% Similarity=0.268 Sum_probs=69.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... +.+ +. .+ .....+.
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~---~Vtli~~~~~~l---~~~--------d~---~~-----------~~~~~~~ 219 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGV---KVTVFERGDRIL---PLE--------DP---EV-----------SKQAQKI 219 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cch--------hH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 699999875421 000 00 00 0123455
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC-EEE--eCC--CeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ-TLI--TNS--GKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~-~v~--~~~--g~~i~yd~lvlATG~~~~~ 176 (489)
+++. +++++++++.+++.... .+. ..+ +.++++|.+++|+|..|..
T Consensus 220 l~~~-I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~ 270 (460)
T PRK06292 220 LSKE-FKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNT 270 (460)
T ss_pred Hhhc-cEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCC
Confidence 6777 99999999999976543 343 223 3579999999999988763
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00021 Score=72.08 Aligned_cols=105 Identities=21% Similarity=0.319 Sum_probs=75.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcchhh--------h---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR--------L--------------------------------- 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~l~~--------~--------------------------------- 246 (489)
.|+|||+|+.|+-+|..|++.| .+|+++++.+.+-.. .
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 3899999999999999999999 999999876321000 0
Q ss_pred -------h---------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 247 -------F---------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 247 -------~---------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
+ -..+.+.+.+.+.+ .|++++. +++|+++..++++ + .+.+++|+++.||.||.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vV~A 157 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYC-PARYKEIIRNQDY-V-RVTLDNGQQLRAKLLIAA 157 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEc-CCeEEEEEEcCCe-E-EEEECCCCEEEeeEEEEe
Confidence 0 01233444455555 4999999 9999999865443 3 477788889999999999
Q ss_pred cCCCCCCchhhhcCC
Q 011267 304 IGAKPTVSPFERVGL 318 (489)
Q Consensus 304 ~G~~p~~~~~~~~gl 318 (489)
.|.... +.+.+++
T Consensus 158 dG~~S~--vr~~l~~ 170 (382)
T TIGR01984 158 DGANSK--VRELLSI 170 (382)
T ss_pred cCCChH--HHHHcCC
Confidence 997653 3344443
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00033 Score=73.13 Aligned_cols=98 Identities=18% Similarity=0.305 Sum_probs=72.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hhh-------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQR------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~~------------------------- 245 (489)
.|+|||+|+.|+++|..+++.|.+|.++++.... ..+
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~s 81 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNSS 81 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheecccC
Confidence 4899999999999999999999999999864210 000
Q ss_pred ----------hhCH-HHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 246 ----------LFTP-SLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ----------~~~~-~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
++|+ .+...+.+.+++. |+.++. ..++++...+++.+.+|.+.+|..+.||.||+|+|...
T Consensus 82 kgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile--~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 82 KGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQ--GEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred CCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEE--eEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 0011 1223455566666 788876 46777754446778899999999999999999999874
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=97.79 E-value=6.9e-05 Score=77.08 Aligned_cols=92 Identities=18% Similarity=0.205 Sum_probs=67.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCcEEEEccCCcchh---------hhhCHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~l~---------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.+++|+|||+|+.|+.+|..|++ .|++|+++++.+.+.. ......+...+.+.++..||+++. |..+-
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~-nv~vg 103 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFG-NVTLG 103 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEc-CEEEC
Confidence 46789999999999999999986 7999999999875531 111223445666778888999988 76552
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
. .+.+++.+ ..+|.||+|+|..+.
T Consensus 104 ~----------dvtl~~L~-~~yDaVIlAtGa~~~ 127 (491)
T PLN02852 104 R----------DVSLSELR-DLYHVVVLAYGAESD 127 (491)
T ss_pred c----------cccHHHHh-hhCCEEEEecCCCCC
Confidence 1 23444432 468999999999763
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.4e-05 Score=78.11 Aligned_cols=97 Identities=18% Similarity=0.211 Sum_probs=70.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+|+++.+... +.+ +. .+ .....+.+
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~---~Vtli~~~~~il---~~~--------d~---~i-----------~~~l~~~L 288 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGA---ESYIFARGNRLL---RKF--------DE---TI-----------INELENDM 288 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCC---cEEEEEeccccc---ccC--------CH---HH-----------HHHHHHHH
Confidence 5789999999999999999999875 799999865321 000 00 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC---EEEeCC-CeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ---TLITNS-GKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~---~v~~~~-g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.+..+.+++.+.. .+...+ ++++++|.+++|+|..|.
T Consensus 289 ~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn 337 (561)
T PTZ00058 289 KKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPN 337 (561)
T ss_pred HHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCC
Confidence 788999999999999976432 233333 457999999999998775
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00019 Score=71.28 Aligned_cols=100 Identities=29% Similarity=0.372 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-----------------------------------------hh---
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-----------------------------------------LQ--- 244 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-----------------------------------------l~--- 244 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+ ..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 82 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD 82 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence 5899999999999999999999999999987211 00
Q ss_pred -----------hh------------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CC--cEEEc
Q 011267 245 -----------RL------------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DG--STIDA 297 (489)
Q Consensus 245 -----------~~------------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~a 297 (489)
.. + -..+.+.+.+.+++.|++++. +++++.++.+.++....+... +| +++.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~-~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~a 161 (356)
T PF01494_consen 83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRF-GTRVVSIEQDDDGVTVVVRDGEDGEEETIEA 161 (356)
T ss_dssp SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEE-SEEEEEEEEETTEEEEEEEETCTCEEEEEEE
T ss_pred ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhhee-eeecccccccccccccccccccCCceeEEEE
Confidence 00 0 135667788888889999999 999999986654432223333 34 36999
Q ss_pred CEEEEccCCCCC
Q 011267 298 DTIVIGIGAKPT 309 (489)
Q Consensus 298 D~vi~a~G~~p~ 309 (489)
|+||-|-|....
T Consensus 162 dlvVgADG~~S~ 173 (356)
T PF01494_consen 162 DLVVGADGAHSK 173 (356)
T ss_dssp SEEEE-SGTT-H
T ss_pred eeeecccCcccc
Confidence 999999998764
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00025 Score=71.46 Aligned_cols=98 Identities=28% Similarity=0.359 Sum_probs=73.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h--h---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R--L--------------------------------- 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~--~--------------------------------- 246 (489)
.|+|||+|+.|+-+|..|++.|.+|+++++.+.+-. + .
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 389999999999999999999999999998742100 0 0
Q ss_pred --------h---------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 247 --------F---------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 247 --------~---------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
+ -..+.+.+.+.+++.| ++++. +++|++++..+ +.+ .+.+++|+++.+|.||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~~~~vi~ 157 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLC-PARVVELPRHS-DHV-ELTLDDGQQLRARLLVG 157 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEec-CCeEEEEEecC-Cee-EEEECCCCEEEeeEEEE
Confidence 0 0112334555566667 99999 99999998543 344 57888998999999999
Q ss_pred ccCCCCC
Q 011267 303 GIGAKPT 309 (489)
Q Consensus 303 a~G~~p~ 309 (489)
|.|....
T Consensus 158 adG~~S~ 164 (385)
T TIGR01988 158 ADGANSK 164 (385)
T ss_pred eCCCCCH
Confidence 9998653
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.5e-05 Score=79.86 Aligned_cols=107 Identities=25% Similarity=0.342 Sum_probs=27.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----------------------------h--------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------------R-------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----------------------------~-------------- 245 (489)
.|+|||||..|+-+|..+++.|.+|.|+++.+.+.. +
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~ 80 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG 80 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence 389999999999999999999999999998843200 0
Q ss_pred -----hhCH-HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---CcEEEcCEEEEccCCCCCCchhhhc
Q 011267 246 -----LFTP-SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GSTIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 246 -----~~~~-~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
.+++ .+...+.+++++.|+++++ ++.|.++.. +++++.+|.+.+ ..++.|+.+|-|||- -+++..+
T Consensus 81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~-~t~v~~v~~-~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~---g~l~~~a 155 (428)
T PF12831_consen 81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLL-GTRVVDVIR-DGGRITGVIVETKSGRKEIRAKVFIDATGD---GDLAALA 155 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccc-ccccccccc-cccccccccccccccccccccccccccccc---ccccccc
Confidence 1111 1223466677788999999 999999985 456788888875 467999999999993 2556666
Q ss_pred CCee
Q 011267 317 GLNS 320 (489)
Q Consensus 317 gl~~ 320 (489)
|++.
T Consensus 156 G~~~ 159 (428)
T PF12831_consen 156 GAPY 159 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 6654
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=77.66 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=31.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||+|.||++||.++++.|. +|+||++..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~---~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGY---NVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCC---cEEEEecCC
Confidence 46799999999999999999999876 799999754
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=97.76 E-value=6.4e-05 Score=78.08 Aligned_cols=90 Identities=24% Similarity=0.288 Sum_probs=68.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|+.|+++|..|++.|.+|+++++.+++. + ..++..+.....+.+++.||++++ ++.+..-
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~-~~~v~~~- 219 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVT-NTEIGVD- 219 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEEC-CCEeCCc-
Confidence 35799999999999999999999999999999887542 1 113556666666788899999999 8876311
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+. .++....+|.|++|+|..
T Consensus 220 ---------~~-~~~~~~~~d~VilAtGa~ 239 (485)
T TIGR01317 220 ---------IS-ADELKEQFDAVVLAGGAT 239 (485)
T ss_pred ---------cC-HHHHHhhCCEEEEccCCC
Confidence 10 011235789999999997
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00021 Score=71.86 Aligned_cols=98 Identities=14% Similarity=0.233 Sum_probs=69.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----hhCHHH---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LFTPSL--------------------------------- 251 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----~~~~~~--------------------------------- 251 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+... .+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCEE
Confidence 6899999999999999999999999999987532100 000000
Q ss_pred ---------------HHHHHHHHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 252 ---------------AQRYEQLYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 252 ---------------~~~l~~~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
...+.+.|.+ .+.++++ ++++++++.+ ++.+ .|++++|+++.+|+||-|-|....
T Consensus 82 ~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~i~~-~~~v~~i~~~-~~~v-~v~~~~g~~~~~~~vigadG~~S~ 153 (373)
T PRK06753 82 NKVKLKSNTLNVTLHRQTLIDIIKSYVKEDAIFT-GKEVTKIENE-TDKV-TIHFADGESEAFDLCIGADGIHSK 153 (373)
T ss_pred eecccccCCccccccHHHHHHHHHHhCCCceEEE-CCEEEEEEec-CCcE-EEEECCCCEEecCEEEECCCcchH
Confidence 0112222222 2457888 9999999854 3443 578889999999999999997654
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=72.14 Aligned_cols=101 Identities=25% Similarity=0.383 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----hh-------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----QR------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----~~------------------------------------- 245 (489)
..+|+|||||+.|+-+|..|++.|.+|+++++.+.+- .+
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 97 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD 97 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence 4579999999999999999999999999998763210 00
Q ss_pred -----hh---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEE
Q 011267 246 -----LF---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLED-G--STIDADTIV 301 (489)
Q Consensus 246 -----~~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~aD~vi 301 (489)
.+ ...+.+.+.+.+.+. |+++++ ++++++++.++++ + .|.+.+ + .++.||+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~-~~~v~~v~~~~~~-~-~v~~~~~~~~~~i~adlvI 174 (415)
T PRK07364 98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLC-PAEVVSVEYQQDA-A-TVTLEIEGKQQTLQSKLVV 174 (415)
T ss_pred CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEc-CCeeEEEEecCCe-e-EEEEccCCcceEEeeeEEE
Confidence 00 012223344444443 799999 9999999754433 3 356653 2 369999999
Q ss_pred EccCCCCCC
Q 011267 302 IGIGAKPTV 310 (489)
Q Consensus 302 ~a~G~~p~~ 310 (489)
.|.|.....
T Consensus 175 gADG~~S~v 183 (415)
T PRK07364 175 AADGARSPI 183 (415)
T ss_pred EeCCCCchh
Confidence 999987643
|
|
| >KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=7.1e-05 Score=74.18 Aligned_cols=99 Identities=21% Similarity=0.353 Sum_probs=78.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
...||++|+|..|+.+|..|+.... +||+|.+++.. ..+ ++.+ .+ .....++|
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~---~VT~V~~e~~~-~~~------lf~~------~i-----------~~~~~~y~ 265 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAK---SVTVVFPEPWL-LPR------LFGP------SI-----------GQFYEDYY 265 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCc---eEEEEccCccc-hhh------hhhH------HH-----------HHHHHHHH
Confidence 6789999999999999999999854 89999998753 111 1111 00 13456788
Q ss_pred HHCCcEEEeCCcEEEEeCCC----CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~----~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.++++++++.+.+++... ..|.+.+|+++++|-|++.+|+.|..
T Consensus 266 e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t 315 (478)
T KOG1336|consen 266 ENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNT 315 (478)
T ss_pred HhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccc
Confidence 99999999999988887544 36788999999999999999999864
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00028 Score=71.65 Aligned_cols=99 Identities=25% Similarity=0.357 Sum_probs=72.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------hh------h-------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------QR------L------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~~------~------------- 246 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+- .+ .
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~~ 83 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGMEV 83 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEEE
Confidence 479999999999999999999999999999764210 00 0
Q ss_pred ----------h---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 247 ----------F---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 247 ----------~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
+ -..+.+.+.+.+.+. |+++++ ++++++++.++++ + .+.+.+|+++.+|+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~-~~~v~~i~~~~~~-v-~v~~~~g~~i~a~lv 160 (400)
T PRK08013 84 WDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLA-PAELQQVAWGENE-A-FLTLKDGSMLTARLV 160 (400)
T ss_pred EeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEc-CCeeEEEEecCCe-E-EEEEcCCCEEEeeEE
Confidence 0 001223334444443 799999 9999999755433 3 577889999999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|-|-|....
T Consensus 161 VgADG~~S~ 169 (400)
T PRK08013 161 VGADGANSW 169 (400)
T ss_pred EEeCCCCcH
Confidence 999998764
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.74 E-value=8.6e-05 Score=77.43 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+||+|||||+||+.+|..+++.|. +|+||++...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~---~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGA---KTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCC---CEEEEecccc
Confidence 589999999999999999999876 6999998643
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00031 Score=71.21 Aligned_cols=108 Identities=17% Similarity=0.240 Sum_probs=80.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------------hh------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------QR------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------------~~------------------------ 245 (489)
-.|+|||+|+.|.-+|..|++.|.+|.++++.+.+- +.
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~ 83 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE 83 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence 468999999999999999999999999999863210 00
Q ss_pred -------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 246 -------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 246 -------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+ -..+-+++.+..++.|++++. ++++..+..++++.+. .+..++.++.++.||.|.|... .+.+.++
T Consensus 84 ~~~~~~y~v~R~~fd~~La~~A~~aGae~~~-~~~~~~~~~~~~~~~~-~~~~~~~e~~a~~vI~AdG~~s--~l~~~lg 159 (396)
T COG0644 84 VPVGEGYIVDRAKFDKWLAERAEEAGAELYP-GTRVTGVIREDDGVVV-GVRAGDDEVRAKVVIDADGVNS--ALARKLG 159 (396)
T ss_pred cCCCceEEEEhHHhhHHHHHHHHHcCCEEEe-ceEEEEEEEeCCcEEE-EEEcCCEEEEcCEEEECCCcch--HHHHHhC
Confidence 00 123445677888899999999 9999999876656554 3444447899999999999765 4455555
Q ss_pred Ce
Q 011267 318 LN 319 (489)
Q Consensus 318 l~ 319 (489)
+.
T Consensus 160 ~~ 161 (396)
T COG0644 160 LK 161 (396)
T ss_pred CC
Confidence 54
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00032 Score=70.87 Aligned_cols=97 Identities=22% Similarity=0.297 Sum_probs=71.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------------h------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------------R------------------ 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------------------------~------------------ 245 (489)
.|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.. .
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG 80 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence 389999999999999999999999999997642110 0
Q ss_pred -hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 246 -LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 246 -~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
.-...+.+.+.+.+.+.|++++. ..++.+...+ +....|.+++|+++.|+.||.|+|..+
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~--~~v~~i~~~~-~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLE--RKAIHAEADG-VALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEc--cEEEEEEecC-CceeEEEeCCCCEEEeCEEEECCCCch
Confidence 00022335555666777998865 6788887542 333457788888999999999999876
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00035 Score=70.72 Aligned_cols=100 Identities=22% Similarity=0.340 Sum_probs=73.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------h------hh------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------Q------RL------------ 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~------~~------------ 246 (489)
...|+|||||+.|+-+|..|++.|.+|+++++.+... . ..
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~ 84 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRLE 84 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceEE
Confidence 3579999999999999999999999999998763100 0 00
Q ss_pred ----------h---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 247 ----------F---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 247 ----------~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
+ ...+.+.+.+.+++. |++++. +++++++...+++ ..|.+++|+++.+|.|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~-~~~v~~i~~~~~~--~~v~~~~g~~~~a~~v 161 (391)
T PRK08020 85 TWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRC-PASLQALQRDDDG--WELTLADGEEIQAKLV 161 (391)
T ss_pred EEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEc-CCeeEEEEEcCCe--EEEEECCCCEEEeCEE
Confidence 0 011223344445555 999999 9999999754333 3577788889999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|.|.|....
T Consensus 162 I~AdG~~S~ 170 (391)
T PRK08020 162 IGADGANSQ 170 (391)
T ss_pred EEeCCCCch
Confidence 999999774
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00013 Score=80.77 Aligned_cols=90 Identities=20% Similarity=0.227 Sum_probs=65.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
+++|+|||||+.|+.+|..|++.|++|+++++.+.+.. . .++.+......+.+++.||++++ +... .
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~-g~~~-d--- 611 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKY-GCSP-D--- 611 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEE-eccc-c---
Confidence 46899999999999999999999999999998764311 1 12344555555677888999998 7421 0
Q ss_pred CCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 279 GSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+++.+...+|.||+|+|..+.
T Consensus 612 --------~~ve~l~~~gYDaVIIATGA~~~ 634 (1012)
T TIGR03315 612 --------LTVAELKNQGYKYVILAIGAWKH 634 (1012)
T ss_pred --------eEhhhhhcccccEEEECCCCCCC
Confidence 12233334568999999999754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.7e-05 Score=81.46 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=69.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. +. .++.++.+...+.+++.||+|++ ++.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~-~~~v~~-- 506 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFET-DVIVGK-- 506 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEEC-CCEECC--
Confidence 35789999999999999999999999999999864321 10 13455666666778899999999 865411
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCC-CCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~-~p~ 309 (489)
.+.+++.....+|.||+|+|. .|.
T Consensus 507 --------~v~~~~l~~~~ydavvlAtGa~~~~ 531 (752)
T PRK12778 507 --------TITIEELEEEGFKGIFIASGAGLPN 531 (752)
T ss_pred --------cCCHHHHhhcCCCEEEEeCCCCCCC
Confidence 233444445679999999998 465
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00032 Score=70.83 Aligned_cols=100 Identities=24% Similarity=0.339 Sum_probs=71.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--c-------------chh-------------hh-------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--H-------------LLQ-------------RL------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~--~-------------~l~-------------~~------------- 246 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+ . +.+ ..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~~ 83 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLET 83 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEEE
Confidence 469999999999999999999999999999653 0 000 00
Q ss_pred ---------hC---------------HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 247 ---------FT---------------PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 ---------~~---------------~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
++ ..+...+.+.+++ .|++++. ++++++++.++++ + .+++++|+++.||+||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~-~~~v~~~~~~~~~-~-~v~~~~g~~~~~~lvI 160 (384)
T PRK08849 84 WEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMC-PEKLADLEFSAEG-N-RVTLESGAEIEAKWVI 160 (384)
T ss_pred EeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEEC-CCceeEEEEcCCe-E-EEEECCCCEEEeeEEE
Confidence 00 0001112222333 3799999 9999999865443 3 5888999999999999
Q ss_pred EccCCCCCC
Q 011267 302 IGIGAKPTV 310 (489)
Q Consensus 302 ~a~G~~p~~ 310 (489)
.|.|.....
T Consensus 161 gADG~~S~v 169 (384)
T PRK08849 161 GADGANSQV 169 (384)
T ss_pred EecCCCchh
Confidence 999997754
|
|
| >KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=4.4e-05 Score=78.70 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=36.5
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++++|+|||||+|||+||++|.+.|+ +|+|+|.....+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~---~V~VLEARdRvG 51 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGF---DVLVLEARDRVG 51 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCC---ceEEEeccCCcC
Confidence 35677899999999999999999999998 699999987764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00011 Score=74.85 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=31.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.||+|||||+||+++|..|++.|+ +|+|+|+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGI---EVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC---cEEEEEcCCc
Confidence 479999999999999999999987 6999999764
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0001 Score=76.49 Aligned_cols=97 Identities=16% Similarity=0.316 Sum_probs=68.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..|++.|. +|+||++.+... |.+ +. .+ .....+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~~~~~l 225 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGS---EVDVVEMFDQVI---PAA--------DK---DI-----------VKVFTKRI 225 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCC---CEEEEecCCCCC---CcC--------CH---HH-----------HHHHHHHH
Confidence 4689999999999999999999876 799999876421 000 00 00 01223445
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCC--C--eEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~--g--~~i~yd~lvlATG~~~~~ 176 (489)
++. ++++.+++|..++.... .+.+.+ + .++++|.+++|+|..|..
T Consensus 226 ~~~-v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~ 276 (471)
T PRK06467 226 KKQ-FNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNG 276 (471)
T ss_pred hhc-eEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccC
Confidence 566 99999999998875433 344433 2 469999999999998763
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00042 Score=72.45 Aligned_cols=136 Identities=21% Similarity=0.272 Sum_probs=81.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh------------------------------------hh----
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------RL---- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------~~---- 246 (489)
.|+|+|||+|.+|+-.|..|.+.|.+++++++.+.+.. ..
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f 80 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF 80 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence 37899999999999999999999999999998743210 00
Q ss_pred -hCHHHHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCC---cEEEEEeCC-Cc--EEEcCEEEEccCCC--CCCchhhh
Q 011267 247 -FTPSLAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDG---RVAAVKLED-GS--TIDADTIVIGIGAK--PTVSPFER 315 (489)
Q Consensus 247 -~~~~~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~---~v~~v~~~~-g~--~i~aD~vi~a~G~~--p~~~~~~~ 315 (489)
-..++.++++...+..++ .+.+ |++|++++..++. ....|++.+ |+ +-.+|.||+|+|.- |+.+.-.-
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~f-nt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRF-NTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEET-SEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEE-ccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 014678888888888887 4677 9999999875442 223455544 42 34689999999974 54332001
Q ss_pred cCCeecCCcEEeCCCCCC----CCCCeEEecc
Q 011267 316 VGLNSSVGGIQVDGQFRT----RMPGIFAIGD 343 (489)
Q Consensus 316 ~gl~~~~g~i~vd~~~~t----~~~~Iya~GD 343 (489)
-|++.=.|.+.=-..++. ..++|-++|-
T Consensus 160 ~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~ 191 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGG 191 (531)
T ss_dssp CTGGGHCSEEEEGGG--TGGGGTTSEEEEESS
T ss_pred hhhhcCCeeEEccccCcChhhcCCCEEEEEeC
Confidence 233221233332223332 3466777774
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00021 Score=72.67 Aligned_cols=92 Identities=12% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCCcEEEECCCHHHHHHHHHH-HhCCCcEEEEccCCcchh---------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAA-VGWKLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l-~~~g~~V~lv~~~~~~l~---------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
.+++|+|||+|+.|+.+|..| ++.|++|+++++.+.+.. +..-..+.+.+...+...+++++. |..+-.
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~g-nv~VG~ 116 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFG-NVHVGV 116 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEe-eeEecC
Confidence 468999999999999999965 567999999999876522 101124455565666677888876 554421
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+..++=+ -.+|.||+|+|..+.
T Consensus 117 ----------Dvt~eeL~-~~YDAVIlAtGA~~l 139 (506)
T PTZ00188 117 ----------DLKMEELR-NHYNCVIFCCGASEV 139 (506)
T ss_pred ----------ccCHHHHH-hcCCEEEEEcCCCCC
Confidence 11122212 268999999998854
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00048 Score=61.46 Aligned_cols=138 Identities=23% Similarity=0.320 Sum_probs=89.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----------------------h--------------hhCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----------------------R--------------LFTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----------------------~--------------~~~~ 249 (489)
...|+|+|+|++|+.+|+.|++.|.+|.+++++-.+-. . .-..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~ 109 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA 109 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence 45799999999999999999999999999998732210 0 0012
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----------CCcEEEcCEEEEccCCCCCC-chhh-h-
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-----------DGSTIDADTIVIGIGAKPTV-SPFE-R- 315 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-----------~g~~i~aD~vi~a~G~~p~~-~~~~-~- 315 (489)
.+...+....-+.|.+++. +..|+++.-.++.++.+|..+ |--.++++.||-+||-.... .++. +
T Consensus 110 e~~skl~~~a~~aGaki~n-~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr~ 188 (262)
T COG1635 110 EFASKLAARALDAGAKIFN-GVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKRI 188 (262)
T ss_pred HHHHHHHHHHHhcCceeee-cceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHhc
Confidence 2333344445567899998 999999875544478787764 22478999999999976532 1222 1
Q ss_pred --cCCeec-CCcE--------EeCCCCCCCCCCeEEeccccc
Q 011267 316 --VGLNSS-VGGI--------QVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 316 --~gl~~~-~g~i--------~vd~~~~t~~~~Iya~GD~a~ 346 (489)
++++.. .+.. .|+.+ +--+||+|++|=.+.
T Consensus 189 ~~l~~~~~Ge~~mw~e~~E~lvV~~T-~eV~pgL~vaGMa~~ 229 (262)
T COG1635 189 PELGIEVPGEKSMWAERGEDLVVENT-GEVYPGLYVAGMAVN 229 (262)
T ss_pred cccccccCCCcchhhhHHHHHHHhcc-ccccCCeEeehhhHH
Confidence 122221 1111 12211 124799999996664
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0006 Score=69.41 Aligned_cols=110 Identities=25% Similarity=0.336 Sum_probs=75.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc----------------hh------h-------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------LQ------R------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~----------------l~------~------------------- 245 (489)
...|+|||||++|+-+|..|++.|.+|+++++.+.+ +. .
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~ 85 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR 85 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence 457999999999999999999999999999976311 00 0
Q ss_pred ---h--h--------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEE--eCCCc-EEEcCEEEE
Q 011267 246 ---L--F--------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVK--LEDGS-TIDADTIVI 302 (489)
Q Consensus 246 ---~--~--------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~--~~~g~-~i~aD~vi~ 302 (489)
. + ...+.+.+.+.+++ .|++++. +++++++..+ ++.+..|. ..+|+ ++.||.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~-~~~v~~~~~~-~~~v~~v~~~~~~g~~~i~a~~vI~ 163 (407)
T PRK06185 86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRM-GAEVTGLIEE-GGRVTGVRARTPDGPGEIRADLVVG 163 (407)
T ss_pred EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEe-CCEEEEEEEe-CCEEEEEEEEcCCCcEEEEeCEEEE
Confidence 0 0 01223344444444 4899999 9999999854 44554444 34664 799999999
Q ss_pred ccCCCCCCchhhhcCCee
Q 011267 303 GIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 303 a~G~~p~~~~~~~~gl~~ 320 (489)
|.|.... +-+.+++..
T Consensus 164 AdG~~S~--vr~~~gi~~ 179 (407)
T PRK06185 164 ADGRHSR--VRALAGLEV 179 (407)
T ss_pred CCCCchH--HHHHcCCCc
Confidence 9998753 344455543
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0004 Score=70.67 Aligned_cols=108 Identities=22% Similarity=0.358 Sum_probs=74.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Cc-------------c-------hh------hh-------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NH-------------L-------LQ------RL------------- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~-------------~-------l~------~~------------- 246 (489)
..+|+|||+|+.|+-+|..|.+.|.+|+++++. +. + +. ..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 357999999999999999999999999999974 10 0 00 00
Q ss_pred ----------hC---------------HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEE
Q 011267 247 ----------FT---------------PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300 (489)
Q Consensus 247 ----------~~---------------~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~v 300 (489)
++ ..+.+.+.+.+.+ .|++++. ++++++++.+++ . ..|.+++|+++.||+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~-~~~v~~i~~~~~-~-~~v~~~~g~~~~a~lv 160 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLM-PARCQSIAVGES-E-AWLTLDNGQALTAKLV 160 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEc-CCeeEEEEeeCC-e-EEEEECCCCEEEeCEE
Confidence 00 0112233333444 4799999 999999975433 3 3578889999999999
Q ss_pred EEccCCCCCCchhhhcCCe
Q 011267 301 VIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~ 319 (489)
|.|.|.... +-+.+++.
T Consensus 161 IgADG~~S~--vR~~~~~~ 177 (405)
T PRK08850 161 VGADGANSW--LRRQMDIP 177 (405)
T ss_pred EEeCCCCCh--hHHHcCCC
Confidence 999997653 33344443
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0005 Score=72.81 Aligned_cols=102 Identities=22% Similarity=0.304 Sum_probs=72.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------------------------h--------h------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------------R--------L------ 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------------------------~--------~------ 246 (489)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. . .
T Consensus 23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 102 (547)
T PRK08132 23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE 102 (547)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence 45799999999999999999999999999987742100 0 0
Q ss_pred -------------------h-CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEcc
Q 011267 247 -------------------F-TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGI 304 (489)
Q Consensus 247 -------------------~-~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~aD~vi~a~ 304 (489)
+ ...+.+.+.+.+++. |+++++ ++++++++.++++....+...+|+ ++.+|.||.|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~-~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vVgAD 181 (547)
T PRK08132 103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRW-KNKVTGLEQHDDGVTLTVETPDGPYTLEADWVIACD 181 (547)
T ss_pred EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEe-CCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEEECC
Confidence 0 011223445555554 799999 999999986544432233334554 69999999999
Q ss_pred CCCCC
Q 011267 305 GAKPT 309 (489)
Q Consensus 305 G~~p~ 309 (489)
|....
T Consensus 182 G~~S~ 186 (547)
T PRK08132 182 GARSP 186 (547)
T ss_pred CCCcH
Confidence 98765
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00088 Score=70.99 Aligned_cols=61 Identities=15% Similarity=0.254 Sum_probs=42.3
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEEeC--CCcEE-------EcCEEEEccCCCCCCchhhhcCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVKLE--DGSTI-------DADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~~~--~g~~i-------~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
......++++.+ ++.|++|.-+++ +++.+|++. +|++. ....||+|.|.-....+|..+|+
T Consensus 228 ~~~~~~nl~Vl~-~a~V~rIl~~~~~~~~ra~GV~~~~~~g~~~~~~~~~~~~~eVILsAGai~sP~lL~~SGI 300 (587)
T PLN02785 228 AAGNPNKLRVLL-HATVQKIVFDTSGKRPRATGVIFKDENGNQHQAFLSNNKGSEIILSAGAIGSPQMLLLSGI 300 (587)
T ss_pred hhcCCCCeEEEe-CCEEEEEEEcCCCCCceEEEEEEEECCCceEEEEeecccCceEEecccccCCHHHHHHcCC
Confidence 345567899999 999999986543 368888874 45432 24789999997655455655554
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0011 Score=64.85 Aligned_cols=100 Identities=20% Similarity=0.283 Sum_probs=69.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcch-----------------------hhh---hC-----------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLL-----------------------QRL---FT----------- 248 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~l-----------------------~~~---~~----------- 248 (489)
...|+|||+|..|+-+|..|++. |.+|+++++...+- .+. ++
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~ha 171 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKHA 171 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecch
Confidence 35899999999999999999975 88999999864321 000 00
Q ss_pred HHHHHHHH-HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------C--C------cEEEcCEEEEccCCCC
Q 011267 249 PSLAQRYE-QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------D--G------STIDADTIVIGIGAKP 308 (489)
Q Consensus 249 ~~~~~~l~-~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------~--g------~~i~aD~vi~a~G~~p 308 (489)
..+...+. +.+++.||+++. ++.+.++..+ ++++.++.+. + + ..+.|+.||+|||..+
T Consensus 172 ~e~~stLi~ka~~~~gVkI~~-~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 172 ALFTSTIMSKLLARPNVKLFN-AVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred HHHHHHHHHHHHhcCCCEEEe-CeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 11111233 344457899999 9999998854 5677777741 1 1 2689999999999654
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00051 Score=72.59 Aligned_cols=100 Identities=25% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------------------------h-
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------------R- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------------~- 245 (489)
..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.. .
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~ 89 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR 89 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence 46799999999999999999999999999997732100 0
Q ss_pred ---hhC-----------------HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEE
Q 011267 246 ---LFT-----------------PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTI 300 (489)
Q Consensus 246 ---~~~-----------------~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~v 300 (489)
.++ +.+.+.+.+.+.+ .|+++++ ++++++++.++++ + .++++ +| +++.||.|
T Consensus 90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~-g~~v~~i~~~~~~-v-~v~~~~~~G~~~~i~ad~v 166 (538)
T PRK06183 90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRF-GHEVTALTQDDDG-V-TVTLTDADGQRETVRARYV 166 (538)
T ss_pred EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEc-CCEEEEEEEcCCe-E-EEEEEcCCCCEEEEEEEEE
Confidence 000 1222344455555 3899999 9999999866544 3 35554 56 47999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|-|.|....
T Consensus 167 VgADG~~S~ 175 (538)
T PRK06183 167 VGCDGANSF 175 (538)
T ss_pred EecCCCchh
Confidence 999997654
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00012 Score=78.74 Aligned_cols=92 Identities=17% Similarity=0.319 Sum_probs=69.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. +..++..+.+...+.+++.||++++ ++.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~-~~~v~~-- 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHL-NCEIGR-- 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEc-CCccCC--
Confidence 46899999999999999999999999999999887532 1124666666677888999999999 876521
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+++ ....+|.|++|+|..+.
T Consensus 386 --------~~~~~~-l~~~~DaV~latGa~~~ 408 (639)
T PRK12809 386 --------DITFSD-LTSEYDAVFIGVGTYGM 408 (639)
T ss_pred --------cCCHHH-HHhcCCEEEEeCCCCCC
Confidence 012222 13468999999998653
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0005 Score=70.36 Aligned_cols=106 Identities=19% Similarity=0.313 Sum_probs=75.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hhhh-----------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQRL----------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~~~----------------------- 246 (489)
-.|+|||+|+.|+-+|..|++.|.+|.++++.+.+ ++..
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEESA 85 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCCCc
Confidence 47999999999999999999999999999876321 0000
Q ss_pred --------------------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 247 --------------------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 247 --------------------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.-..+-.++.+..++.|++++. +++|+++... ++++..+.. ++.++.||.||.|.|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~-~~~V~~i~~~-~~~v~~v~~-~~~~i~A~~VI~AdG~ 162 (429)
T PRK10015 86 VTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIP-GVRVDALVRE-GNKVTGVQA-GDDILEANVVILADGV 162 (429)
T ss_pred eEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEEC-CcEEEEEEEe-CCEEEEEEe-CCeEEECCEEEEccCc
Confidence 0011223466677788999999 9999998753 455555554 4457999999999998
Q ss_pred CCCCchhhhcCC
Q 011267 307 KPTVSPFERVGL 318 (489)
Q Consensus 307 ~p~~~~~~~~gl 318 (489)
.. .+.+.+++
T Consensus 163 ~s--~v~~~lg~ 172 (429)
T PRK10015 163 NS--MLGRSLGM 172 (429)
T ss_pred ch--hhhcccCC
Confidence 54 33344444
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00049 Score=69.19 Aligned_cols=98 Identities=19% Similarity=0.289 Sum_probs=71.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC----cc----------------hhh-----------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL----------------LQR----------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~----~~----------------l~~----------------------- 245 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+ .+ +.+
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 82 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDNK 82 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEECC
Confidence 58999999999999999999999999999641 10 000
Q ss_pred ------------------hhCHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 246 ------------------LFTPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 246 ------------------~~~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..-..+.+.+.+.+.+.+ ++++. +++++++..+++ .+ .+.+.++ ++.+|+||-|-|.
T Consensus 83 g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~-~~~v~~i~~~~~-~v-~v~~~~~-~~~adlvIgADG~ 158 (374)
T PRK06617 83 ASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLID-NNQYQEVISHND-YS-IIKFDDK-QIKCNLLIICDGA 158 (374)
T ss_pred CceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEEC-CCeEEEEEEcCC-eE-EEEEcCC-EEeeCEEEEeCCC
Confidence 001223444555555554 88998 999999976543 33 4777776 8999999999998
Q ss_pred CCCC
Q 011267 307 KPTV 310 (489)
Q Consensus 307 ~p~~ 310 (489)
....
T Consensus 159 ~S~v 162 (374)
T PRK06617 159 NSKV 162 (374)
T ss_pred Cchh
Confidence 7653
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00065 Score=68.80 Aligned_cols=107 Identities=30% Similarity=0.422 Sum_probs=74.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCC-c-------------c-------h------hh------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPEN-H-------------L-------L------QR------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~-~-------------~-------l------~~------------ 245 (489)
.+|+|||+|+.|+-+|..|++. |.+|+++++.. . + + +.
T Consensus 4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~ 83 (395)
T PRK05732 4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHIH 83 (395)
T ss_pred CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEEE
Confidence 4699999999999999999998 99999999831 0 0 0 00
Q ss_pred ----------hh---------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCE
Q 011267 246 ----------LF---------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299 (489)
Q Consensus 246 ----------~~---------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~ 299 (489)
.+ -..+.+.+.+.+.+ .|++++. +++++++...+ +.+ .+++++|+++.+|.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~-~~~v~~i~~~~-~~~-~v~~~~g~~~~a~~ 160 (395)
T PRK05732 84 VSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHC-PARVANVERTQ-GSV-RVTLDDGETLTGRL 160 (395)
T ss_pred EecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEc-CCEEEEEEEcC-CeE-EEEECCCCEEEeCE
Confidence 00 00122334444444 4799999 99999997543 333 47788888899999
Q ss_pred EEEccCCCCCCchhhhcCCe
Q 011267 300 IVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 300 vi~a~G~~p~~~~~~~~gl~ 319 (489)
||.|.|.... +.+.+++.
T Consensus 161 vI~AdG~~S~--vr~~~~~~ 178 (395)
T PRK05732 161 LVAADGSHSA--LREALGID 178 (395)
T ss_pred EEEecCCChh--hHHhhCCC
Confidence 9999998764 44444443
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=74.87 Aligned_cols=91 Identities=20% Similarity=0.311 Sum_probs=67.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. ..++.++.....+.+++.||++++ ++.+.. .
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~-~ 219 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRT-NVEVGK-D 219 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEe-CCEECC-c
Confidence 457899999999999999999999999999998765421 113455666666778899999999 876532 1
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+.. +.....+|.||+|+|..+
T Consensus 220 ---------~~~-~~~~~~~d~vvlAtGa~~ 240 (471)
T PRK12810 220 ---------ITA-EELLAEYDAVFLGTGAYK 240 (471)
T ss_pred ---------CCH-HHHHhhCCEEEEecCCCC
Confidence 000 111357899999999973
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0003 Score=75.47 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~ 88 (489)
++++||+||||||+||++|..|++. |. +|+|||+.+.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi---~v~IiE~~~~ 67 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDI---TTRIVERKPG 67 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCC---cEEEEEcCCC
Confidence 3478999999999999999999995 77 6999998764
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0035 Score=64.26 Aligned_cols=100 Identities=18% Similarity=0.281 Sum_probs=75.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcch-------------------------h----hhhC--HHHHH
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLL-------------------------Q----RLFT--PSLAQ 253 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l-------------------------~----~~~~--~~~~~ 253 (489)
...+++|||+|++|+-+|..|++.|.. +.++++++.+- + ..+. ..+.+
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~ 86 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD 86 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence 456899999999999999999999998 99998874220 0 0111 12677
Q ss_pred HHHHHHHhcCcE--EEEcCceEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEccCC
Q 011267 254 RYEQLYQQNGVK--FVKVGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGA 306 (489)
Q Consensus 254 ~l~~~l~~~Gv~--~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~aD~vi~a~G~ 306 (489)
++...+++.++. +.+ ++.|+.+..++++....|++++|.+ +.||.||+|||.
T Consensus 87 y~~~~~~~y~~~~~i~~-~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 87 YIKDYLEKYGLRFQIRF-NTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHcCceeEEEc-ccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecC
Confidence 888888888765 344 6777777766777777888888865 459999999997
|
|
| >KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0014 Score=66.48 Aligned_cols=135 Identities=16% Similarity=0.256 Sum_probs=89.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc----------------------------------------hhh
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL----------------------------------------LQR 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~----------------------------------------l~~ 245 (489)
..++++|||+|++|+-.|..|.+.|.++++++|.+.+ +++
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence 3688999999999999999999999999999887422 111
Q ss_pred hh-C-HHHHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEccCCC--CCCchhhh
Q 011267 246 LF-T-PSLAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAK--PTVSPFER 315 (489)
Q Consensus 246 ~~-~-~~~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~vi~a~G~~--p~~~~~~~ 315 (489)
.+ + .++.++|+...++.++ .+.+ ++.+.++....+| ...|...++ ++.-+|.|++|+|-- |+.+....
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f-~~~v~~v~~~~~g-kW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 85 YFPSHREVLEYLRDYAKHFDLLKMINF-NTEVVRVDSIDKG-KWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cCCCHHHHHHHHHHHHHhcChhhheEe-cccEEEEeeccCC-ceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 11 1 2567788888888886 5677 8888888765422 224555443 367799999999987 66554444
Q ss_pred cCCeecCCcEEeCCCCCC----CCCCeEEec
Q 011267 316 VGLNSSVGGIQVDGQFRT----RMPGIFAIG 342 (489)
Q Consensus 316 ~gl~~~~g~i~vd~~~~t----~~~~Iya~G 342 (489)
.+++.=.|.++=-..++. ..+.|.++|
T Consensus 163 ~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG 193 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYKSPEKFRDKVVLVVG 193 (448)
T ss_pred CchhhcCCcceehhhccCcccccCceEEEEC
Confidence 333222233322222222 346677887
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00019 Score=75.43 Aligned_cols=99 Identities=21% Similarity=0.268 Sum_probs=69.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+|+|||||+.|+..|..|++.+. +|+|+++.+... +.+ +. .+ .....+.
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~l~~~ 302 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKS---DVHVFIRQKKVL---RGF--------DE---EV-----------RDFVAEQ 302 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---eEEEEEeccccc---ccc--------CH---HH-----------HHHHHHH
Confidence 45799999999999999999998865 799998765421 000 00 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCC-CC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIE-KQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~-~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.||+++.++.+.++... .. .+.+.++....+|.+++|+|..|..
T Consensus 303 L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt 352 (558)
T PLN02546 303 MSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNT 352 (558)
T ss_pred HHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCC
Confidence 77899999999999888642 22 3444555545689999999988764
|
|
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00025 Score=70.62 Aligned_cols=85 Identities=21% Similarity=0.451 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCC-cEEEEE-eCC--CcEEEcCEEEEccCCCCCCchhhhcCCeec--C
Q 011267 250 SLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDG-RVAAVK-LED--GSTIDADTIVIGIGAKPTVSPFERVGLNSS--V 322 (489)
Q Consensus 250 ~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~-~v~~v~-~~~--g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--~ 322 (489)
.+.+.+.+.+++. |+++++ +++|++|++.+++ ....+. +.+ .+++.++.|+++.|.-.- .+|.++|++-. -
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~-~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL-~LLqksgi~e~~gy 259 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHL-NHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGGAL-PLLQKSGIPEGKGY 259 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEe-cCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchHhH-HHHHHcCChhhccc
Confidence 4455555666666 999999 9999999988777 322222 122 357999999999998764 78999998542 2
Q ss_pred CcEEeCC-CCCCCCC
Q 011267 323 GGIQVDG-QFRTRMP 336 (489)
Q Consensus 323 g~i~vd~-~~~t~~~ 336 (489)
|+.+|.. .+++..|
T Consensus 260 ggfPVsG~fl~~~n~ 274 (488)
T PF06039_consen 260 GGFPVSGQFLRCKNP 274 (488)
T ss_pred CCCcccceEEecCCH
Confidence 4455543 4555433
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00067 Score=68.54 Aligned_cols=107 Identities=24% Similarity=0.329 Sum_probs=74.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------------------hh-----------------h--
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------------QR-----------------L-- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------------------~~-----------------~-- 246 (489)
..+|+|||+|+.|+-+|..|++.|.+|+++++.+... +. .
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~g~~ 86 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDATGRL 86 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCCCCC
Confidence 3479999999999999999999999999999763210 00 0
Q ss_pred -------h---------------CHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 247 -------F---------------TPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 247 -------~---------------~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
+ ...+.+.+.+.+.+. ++. +. +++|++++.+++ .+ .|++++|+++.+|.||.|
T Consensus 87 ~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~-~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~A 162 (388)
T PRK07494 87 IRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RF-GDEAESVRPRED-EV-TVTLADGTTLSARLVVGA 162 (388)
T ss_pred CCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EE-CCeeEEEEEcCC-eE-EEEECCCCEEEEeEEEEe
Confidence 0 012233445555555 455 77 899999975443 33 477888989999999999
Q ss_pred cCCCCCCchhhhcCCe
Q 011267 304 IGAKPTVSPFERVGLN 319 (489)
Q Consensus 304 ~G~~p~~~~~~~~gl~ 319 (489)
.|.... +-+.+++.
T Consensus 163 dG~~S~--vr~~~g~~ 176 (388)
T PRK07494 163 DGRNSP--VREAAGIG 176 (388)
T ss_pred cCCCch--hHHhcCCC
Confidence 999763 33444443
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.58 E-value=5.6e-05 Score=75.02 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=30.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+||+|||||+||+++|..|+++|+ +|+|+|+.+..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~---~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGI---DVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTC---EEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHhccc---ccccchhcccc
Confidence 689999999999999999999988 69999998764
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0002 Score=80.45 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------h-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------R-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
+++|+|||+|+.|+.+|..|+++|++|+++++.+.+.. . .++.++.....+.+++.||++++ ++.+..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~-~~~vg~--- 505 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIET-NKVIGK--- 505 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEe-CCccCC---
Confidence 57899999999999999999999999999998764421 1 13567777778889999999999 764411
Q ss_pred CCCCcEEEEEeCCCc-EEEcCEEEEccCCC-CC
Q 011267 279 GSDGRVAAVKLEDGS-TIDADTIVIGIGAK-PT 309 (489)
Q Consensus 279 ~~~~~v~~v~~~~g~-~i~aD~vi~a~G~~-p~ 309 (489)
.+.+++-. ...+|.||+|||.. |.
T Consensus 506 -------~~~~~~l~~~~~yDaViIATGa~~pr 531 (1006)
T PRK12775 506 -------TFTVPQLMNDKGFDAVFLGVGAGAPT 531 (1006)
T ss_pred -------ccCHHHHhhccCCCEEEEecCCCCCC
Confidence 11221111 24589999999984 54
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.001 Score=67.59 Aligned_cols=99 Identities=17% Similarity=0.258 Sum_probs=70.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------h--------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------R-------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------~-------------------- 245 (489)
++|+|||||+.|+-+|..|++.|.+|+++++.+.+.. .
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~~ 82 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKAR 82 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCcc
Confidence 6899999999999999999999999999997632100 0
Q ss_pred -hh--------------------CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCcEEEcCEE
Q 011267 246 -LF--------------------TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGSTIDADTI 300 (489)
Q Consensus 246 -~~--------------------~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~aD~v 300 (489)
.+ -..+.+.+.+.+.+ .|+++++ +++|++++..+ +.+ .+++ .+++++.+|+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~-~~~v~~~~~~~-~~v-~v~~~~~~~~~~~~adlv 159 (400)
T PRK06475 83 PLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKL-GAEMTSQRQTG-NSI-TATIIRTNSVETVSAAYL 159 (400)
T ss_pred eEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEE-CCEEEEEecCC-Cce-EEEEEeCCCCcEEecCEE
Confidence 00 01223334444444 4799999 99999998543 333 3444 34467999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|-|-|....
T Consensus 160 IgADG~~S~ 168 (400)
T PRK06475 160 IACDGVWSM 168 (400)
T ss_pred EECCCccHh
Confidence 999998754
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00044 Score=70.54 Aligned_cols=98 Identities=17% Similarity=0.249 Sum_probs=67.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcchhh---------------hh-------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHLLQR---------------LF------------------------- 247 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~l~~---------------~~------------------------- 247 (489)
+|+|||||+.|+-+|..|++.| .+|+++++.+.+... .+
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~~ 81 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEWR 81 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCCCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEEEE
Confidence 6899999999999999999998 599999987432100 00
Q ss_pred CHH-----------------H-HHHHHHHHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 248 TPS-----------------L-AQRYEQLYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 248 ~~~-----------------~-~~~l~~~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+.. + ...+.+.|.+ .+..+++ +++|+++...+++ + .+.+++|+++.+|.||.|.|..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~v~~-~~~v~~i~~~~~~-~-~v~~~~g~~~~ad~vVgADG~~ 158 (414)
T TIGR03219 82 NGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIASF-GKRATQIEEQAEE-V-QVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred ecCccceeeeeccccCCcccCCHHHHHHHHHHhCCCceEEc-CCEEEEEEecCCc-E-EEEEcCCCEEEeeEEEECCCcc
Confidence 000 0 0011122221 1456778 9999999865443 3 5788899999999999999976
Q ss_pred CC
Q 011267 308 PT 309 (489)
Q Consensus 308 p~ 309 (489)
..
T Consensus 159 S~ 160 (414)
T TIGR03219 159 SA 160 (414)
T ss_pred HH
Confidence 53
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00082 Score=67.91 Aligned_cols=106 Identities=25% Similarity=0.356 Sum_probs=75.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh---------------------hh-----h--------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ---------------------RL-----F-------------- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~---------------------~~-----~-------------- 247 (489)
.+|+|||||+.|+-+|..|.+.|.+|+++++.+.+.. .. +
T Consensus 6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 85 (388)
T PRK07608 6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMRVF 85 (388)
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEEEE
Confidence 4699999999999999999999999999997744211 00 0
Q ss_pred ------------------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 248 ------------------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 248 ------------------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
...+.+.+.+.+++.| ++++ +.+++++...++ .+ .|++.+|+++.||.||.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~--~~~v~~i~~~~~-~~-~v~~~~g~~~~a~~vI~ 161 (388)
T PRK07608 86 GDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWF--PARAQGLEVDPD-AA-TLTLADGQVLRADLVVG 161 (388)
T ss_pred ECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEE--cceeEEEEecCC-eE-EEEECCCCEEEeeEEEE
Confidence 1123344556666777 8776 577888875433 33 57888888899999999
Q ss_pred ccCCCCCCchhhhcCCe
Q 011267 303 GIGAKPTVSPFERVGLN 319 (489)
Q Consensus 303 a~G~~p~~~~~~~~gl~ 319 (489)
|.|.... +.+.+++.
T Consensus 162 adG~~S~--vr~~~~~~ 176 (388)
T PRK07608 162 ADGAHSW--VRSQAGIK 176 (388)
T ss_pred eCCCCch--HHHhcCCC
Confidence 9998763 33444443
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=76.52 Aligned_cols=98 Identities=20% Similarity=0.162 Sum_probs=67.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH-
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW- 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (489)
..+|+|||||+.|+..|..|++.|. +|+||+..+... +. + +.... ......
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~---eVTLIe~~~~ll---~~-----~---d~eis--------------~~l~~~l 363 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGS---EVVSFEYSPQLL---PL-----L---DADVA--------------KYFERVF 363 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccc---cc-----C---CHHHH--------------HHHHHHH
Confidence 4689999999999999999999875 799999876421 00 0 00000 112222
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--C--EEEeC-------CC--------eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK--Q--TLITN-------SG--------KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~--~--~v~~~-------~g--------~~i~yd~lvlATG~~~~~ 176 (489)
+++.+++++.++.|.+++... . .+.+. ++ +++.+|.+++|||..|..
T Consensus 364 l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt 429 (659)
T PTZ00153 364 LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNT 429 (659)
T ss_pred hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCC
Confidence 356799999999999997643 2 23222 11 369999999999988763
|
|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00019 Score=77.32 Aligned_cols=92 Identities=21% Similarity=0.275 Sum_probs=68.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ++ .++.++.+...+.+++.|+++++ ++.+. ..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~-~~~v~-~d 269 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRF-NTVFG-RD 269 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEe-CCccc-Cc
Confidence 46799999999999999999999999999999886541 11 13556666667778899999999 77541 11
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+++. ...+|.||+|+|..+.
T Consensus 270 ---------v~~~~~-~~~~DaVilAtGa~~~ 291 (652)
T PRK12814 270 ---------ITLEEL-QKEFDAVLLAVGAQKA 291 (652)
T ss_pred ---------cCHHHH-HhhcCEEEEEcCCCCC
Confidence 122222 2358999999998753
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00033 Score=71.39 Aligned_cols=89 Identities=22% Similarity=0.280 Sum_probs=68.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEE-EE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIK-NL 276 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~-~i 276 (489)
.+++|.|||+|+-|+.+|..|.+.|+.|+++++.+..-. ..++.++.+...+.|++.|++|+. ++++- .+
T Consensus 122 tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~-~~~vG~~i 200 (457)
T COG0493 122 TGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKL-NVRVGRDI 200 (457)
T ss_pred CCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEE-cceECCcC
Confidence 468999999999999999999999999999998865421 124567888888999999999999 87663 22
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 277 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.++.= .-+.|.|++++|..
T Consensus 201 -----------t~~~L-~~e~Dav~l~~G~~ 219 (457)
T COG0493 201 -----------TLEEL-LKEYDAVFLATGAG 219 (457)
T ss_pred -----------CHHHH-HHhhCEEEEecccc
Confidence 11111 12349999999974
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0019 Score=61.67 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=34.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE 92 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~ 92 (489)
..+.+|+|||+|++||+||+.|.++. +|||+|.+...+.+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~rh----dVTLfEA~~rlGGh 45 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRRH----DVTLFEADRRLGGH 45 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhccc----ceEEEeccccccCc
Confidence 35678999999999999999998863 69999999877654
|
|
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00047 Score=69.08 Aligned_cols=94 Identities=22% Similarity=0.305 Sum_probs=64.5
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchh--------hhhCHHHHH-------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ--------RLFTPSLAQ------------------------- 253 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~--------~~~~~~~~~------------------------- 253 (489)
.++|||+|+.|+.+|..|.+. |.+|.++++.+.+.+ ...++....
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 378999999999999999987 999999998753211 001111100
Q ss_pred ---------HHHHH-HHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 254 ---------RYEQL-YQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 254 ---------~l~~~-l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+. +++.+..+++ +++|+++.. + .|++.+|+++.||.||.|.|..+.
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~-~~~V~~v~~--~----~v~l~dg~~~~A~~VI~A~G~~s~ 139 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVIL-GRKAVGLDA--D----GVDLAPGTRINARSVIDCRGFKPS 139 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEe-cCEEEEEeC--C----EEEECCCCEEEeeEEEECCCCCCC
Confidence 11121 2333444777 889998852 2 255688999999999999998864
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0026 Score=73.00 Aligned_cols=37 Identities=30% Similarity=0.356 Sum_probs=33.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
...||||||+|.||++||.++++.|. +|+|+|+.+..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga---~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGA---QVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEccCCC
Confidence 36899999999999999999999876 79999998754
|
|
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00011 Score=76.63 Aligned_cols=57 Identities=28% Similarity=0.405 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|..++++.+..+... +|+ ++.+|.||+++..
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~-~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~ 278 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVL-NAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMPL 278 (479)
T ss_pred chHHHHHHHHHHHcCCEEEe-CCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence 35677888888899999999 999999987655544444432 353 6899999999764
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.001 Score=75.08 Aligned_cols=101 Identities=19% Similarity=0.154 Sum_probs=69.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh----------hCHHHHHHHHHHHHhc-CcEEEEcCceEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQN-GVKFVKVGASIKN 275 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~----------~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~ 275 (489)
..+|+|||+|+.|+..|..+++.|.+|+++++.+.+.... -..++...+.+.+++. +++++. ++.|..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~-~t~V~~ 241 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLP-RTTAFG 241 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEc-CCEEEE
Confidence 4679999999999999999999999999999875442211 1123334455556555 599999 999988
Q ss_pred EEeCCCCcEEEEE-eC-------C----C--cEEEcCEEEEccCCCCCC
Q 011267 276 LEAGSDGRVAAVK-LE-------D----G--STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 276 i~~~~~~~v~~v~-~~-------~----g--~~i~aD~vi~a~G~~p~~ 310 (489)
+.. ++.+..+. .. + + .++.+|.||+|||..|..
T Consensus 242 i~~--~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~ 288 (985)
T TIGR01372 242 YYD--HNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERP 288 (985)
T ss_pred Eec--CCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcC
Confidence 752 22222221 00 1 1 268999999999998753
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0013 Score=57.20 Aligned_cols=43 Identities=30% Similarity=0.533 Sum_probs=34.0
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.|+++.....+|+++...+++. .+.+.+|..+.+|.||+|+|.
T Consensus 113 ~~i~v~~~~~~V~~i~~~~~~~--~v~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 113 AGITVRHVRAEVVDIRRDDDGY--RVVTADGQSIRADAVVLATGH 155 (156)
T ss_pred CCcEEEEEeeEEEEEEEcCCcE--EEEECCCCEEEeCEEEECCCC
Confidence 4666543367999998766553 678899999999999999995
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0014 Score=68.36 Aligned_cols=99 Identities=18% Similarity=0.218 Sum_probs=65.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcch------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL------------------------------------------ 243 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l------------------------------------------ 243 (489)
++|+|||+|+.|+-+|..|.+.+. +|+++++...+.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~~ 81 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSHL 81 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHHH
Confidence 479999999999999999987654 789998752211
Q ss_pred ----------------hhh-hCHHHHH---HHHHHHHhcC--cEEEEcCceEEEEEeCCCCcEEEEEeCC-CcEEEcCEE
Q 011267 244 ----------------QRL-FTPSLAQ---RYEQLYQQNG--VKFVKVGASIKNLEAGSDGRVAAVKLED-GSTIDADTI 300 (489)
Q Consensus 244 ----------------~~~-~~~~~~~---~l~~~l~~~G--v~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~~i~aD~v 300 (489)
++. ++.-+.. .+.+.+.+.| +.++. +++|+++...+++ + .+.+.+ |..+.+|.|
T Consensus 82 ~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~-~~~V~~I~~~~~g-~-~V~t~~gg~~i~aD~V 158 (534)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYE-SCQVTDLQITNAG-V-MLATNQDLPSETFDLA 158 (534)
T ss_pred HhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEE-CCEEEEEEEeCCE-E-EEEECCCCeEEEcCEE
Confidence 000 0000111 1223334455 78888 8999999865433 3 466655 468999999
Q ss_pred EEccCCCCC
Q 011267 301 VIGIGAKPT 309 (489)
Q Consensus 301 i~a~G~~p~ 309 (489)
|+|+|..+.
T Consensus 159 VLAtGh~~p 167 (534)
T PRK09897 159 VIATGHVWP 167 (534)
T ss_pred EECCCCCCC
Confidence 999997543
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00021 Score=77.13 Aligned_cols=91 Identities=21% Similarity=0.346 Sum_probs=66.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------h-hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------Q-RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------~-~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.+.+. + ..++.++.....+.+++.|+++++ ++.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~-~~~v~~-- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFEL-NCEVGK-- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEEC-CCEeCC--
Confidence 46799999999999999999999999999999876531 1 113455666666778899999999 876521
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+ +.+.+. ...+|.|++|+|..+
T Consensus 403 ---~-----i~~~~~-~~~~DavilAtGa~~ 424 (654)
T PRK12769 403 ---D-----ISLESL-LEDYDAVFVGVGTYR 424 (654)
T ss_pred ---c-----CCHHHH-HhcCCEEEEeCCCCC
Confidence 0 111111 236899999999864
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=59.02 Aligned_cols=103 Identities=21% Similarity=0.258 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------------------hh------------------CH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------------------LF------------------TP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-------------------~~------------------~~ 249 (489)
...++|||+|+.|+-+|..|++.|.+|.++++...+-.. .+ ..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~ 96 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV 96 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence 467999999999999999999999999999987322100 00 11
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC------CC-----cEEEcCEEEEccCCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE------DG-----STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~------~g-----~~i~aD~vi~a~G~~p~~ 310 (489)
.....+....-+.|++++. ...|+++.-.+++++.+|... .| -.+.+..||-|||-....
T Consensus 97 ~~~s~L~s~a~~aGakifn-~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 97 EFTSTLASKAIDAGAKIFN-LTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp HHHHHHHHHHHTTTEEEEE-TEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred HHHHHHHHHHhcCCCEEEe-eeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence 2223333344458999999 999999876555788888774 22 379999999999987543
|
|
| >KOG2853 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0011 Score=62.76 Aligned_cols=59 Identities=19% Similarity=0.229 Sum_probs=42.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCccccCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~ 108 (489)
.+.||||||||-.|.+.|.-|.++-.. +.+|+++|++....-....+|-+.+......+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT~lSvGGi~QQFSlp 144 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFSLP 144 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccceeeeecceeeecccc
Confidence 367999999999999999999765321 24899999988754455666665554433333
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=65.91 Aligned_cols=101 Identities=19% Similarity=0.173 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hh------h------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQ------R------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~------~------------------ 245 (489)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.. +. .
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~ 82 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR 82 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence 56999999999999999999999999999977431 00 0
Q ss_pred --h--h-------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccC
Q 011267 246 --L--F-------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIG 305 (489)
Q Consensus 246 --~--~-------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G 305 (489)
. + -+.+.+.+.+...+.|+++++ ++++++++..++..+ .|++ .+|+ ++.||+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~-~~~v~~i~~~~~~~~-~V~~~~~G~~~~i~ad~vVgADG 160 (392)
T PRK08243 83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRF-EASDVALHDFDSDRP-YVTYEKDGEEHRLDCDFIAGCDG 160 (392)
T ss_pred EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEE-eeeEEEEEecCCCce-EEEEEcCCeEEEEEeCEEEECCC
Confidence 0 0 112233444555678999999 999999975222222 4555 4664 689999999999
Q ss_pred CCCCC
Q 011267 306 AKPTV 310 (489)
Q Consensus 306 ~~p~~ 310 (489)
....+
T Consensus 161 ~~S~v 165 (392)
T PRK08243 161 FHGVS 165 (392)
T ss_pred CCCch
Confidence 87653
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0016 Score=69.03 Aligned_cols=100 Identities=25% Similarity=0.378 Sum_probs=69.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------h--------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------Q-------------------- 244 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~-------------------- 244 (489)
..+|+|||||+.|+-+|..|++.|.+|+++++.+... .
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~ 86 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR 86 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence 4679999999999999999999999999998762110 0
Q ss_pred -------h-----h----------------------hC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEE
Q 011267 245 -------R-----L----------------------FT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 245 -------~-----~----------------------~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
+ . .+ ..+.+.+.+.+++ .|+++++ ++++++++.++++ +. +.
T Consensus 87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~-~~~v~~i~~~~~~-v~-v~ 163 (545)
T PRK06126 87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRY-GHRLTDFEQDADG-VT-AT 163 (545)
T ss_pred CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEe-ccEEEEEEECCCe-EE-EE
Confidence 0 0 00 0122334444444 4899999 9999999865443 32 33
Q ss_pred e---CCCc--EEEcCEEEEccCCCCC
Q 011267 289 L---EDGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 289 ~---~~g~--~i~aD~vi~a~G~~p~ 309 (489)
+ .+|+ ++.+|.||.|.|....
T Consensus 164 ~~~~~~g~~~~i~ad~vVgADG~~S~ 189 (545)
T PRK06126 164 VEDLDGGESLTIRADYLVGCDGARSA 189 (545)
T ss_pred EEECCCCcEEEEEEEEEEecCCcchH
Confidence 3 3454 6899999999997653
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00064 Score=70.79 Aligned_cols=134 Identities=16% Similarity=0.120 Sum_probs=79.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||+|.+|+++|..|++.|+ +|+++|..+... .....+.
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~---~V~~~d~~~~~~--------------------------------~~~~~~~ 59 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGA---RVTVVDDGDDER--------------------------------HRALAAI 59 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCchhh--------------------------------hHHHHHH
Confidence 45689999999999999999999987 699998653200 0112345
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc---C
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE---K 206 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~---~ 206 (489)
+++.|++++.+..+. ....+|.+|+++|..|.. |........++......+- +..... .
T Consensus 60 l~~~gv~~~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~-~~~~~a~~~gi~v~~~~e~---~~~~~~~~~~ 121 (480)
T PRK01438 60 LEALGATVRLGPGPT--------------LPEDTDLVVTSPGWRPDA-PLLAAAADAGIPVWGEVEL---AWRLRDPDRP 121 (480)
T ss_pred HHHcCCEEEECCCcc--------------ccCCCCEEEECCCcCCCC-HHHHHHHHCCCeecchHHH---HHHhhhccCC
Confidence 677899998875442 014589999999988753 4221211234444432222 222222 1
Q ss_pred CCcEEEECC-C--HHHHHHHHHHHhCCCcEEEE
Q 011267 207 AKKVVVVGG-G--YIGMEVAAAAVGWKLDTTII 236 (489)
Q Consensus 207 ~~~vvViG~-G--~~g~e~A~~l~~~g~~V~lv 236 (489)
.+.|.|-|+ | -+..-++..|...|.++...
T Consensus 122 ~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~~~~ 154 (480)
T PRK01438 122 APWLAVTGTNGKTTTVQMLASMLRAAGLRAAAV 154 (480)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHHHcCCCeEEE
Confidence 223445453 1 24455666677777665543
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=65.78 Aligned_cols=96 Identities=24% Similarity=0.280 Sum_probs=69.7
Q ss_pred EEEECCCHHHHHHHHHH--HhCCCcEEEEccCCcc--hh-----------------------------------------
Q 011267 210 VVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL--LQ----------------------------------------- 244 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l--~~~g~~V~lv~~~~~~--l~----------------------------------------- 244 (489)
|+|||+|+.|+-+|..| .+.|.+|.++++.+.. -.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~Y 81 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYPY 81 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccce
Confidence 78999999999999999 7789999999876332 00
Q ss_pred -hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 245 -RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 245 -~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..-...+.+.+.+.++..|+ ++. +++|++++..++ ...|.+++|+++.|+.||-|.|..+.
T Consensus 82 ~~i~~~~f~~~l~~~~~~~~~-~~~-~~~V~~i~~~~~--~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 82 CMIDRADFYEFLLERAAAGGV-IRL-NARVTSIEETGD--GVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred EEEEHHHHHHHHHHHhhhCCe-EEE-ccEEEEEEecCc--eEEEEECCCCEEEeeEEEECCCcccc
Confidence 00012334455566664454 556 799999986544 34578899999999999999996554
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00043 Score=68.00 Aligned_cols=56 Identities=14% Similarity=0.318 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..++..+.+-+++.|-++.+ ++.|++|.-+ +|++.+|+++||+++.+..|+.-++.
T Consensus 264 Gavs~aia~~~~~~GaeI~t-ka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~ 319 (561)
T KOG4254|consen 264 GAVSFAIAEGAKRAGAEIFT-KATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATP 319 (561)
T ss_pred hHHHHHHHHHHHhccceeee-hhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCch
Confidence 36778888999999999999 9999999854 58999999999999999888776653
|
|
| >KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0011 Score=59.17 Aligned_cols=99 Identities=15% Similarity=0.278 Sum_probs=74.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEc--------------------cCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF--------------------PENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~--------------------~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
...+++|||+|+.+...|..+++...+..+++ .-+.+.....++++.+.+++..++.|.+
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~ 86 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE 86 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence 34689999999999999999888765544443 2244455567789999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
++. ..|+++.. .++...+.+ +.+.+.||.||+|||....
T Consensus 87 i~t--EtVskv~~--sskpF~l~t-d~~~v~~~avI~atGAsAk 125 (322)
T KOG0404|consen 87 IIT--ETVSKVDL--SSKPFKLWT-DARPVTADAVILATGASAK 125 (322)
T ss_pred eee--eehhhccc--cCCCeEEEe-cCCceeeeeEEEeccccee
Confidence 998 67777763 334444444 5557999999999998765
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00021 Score=71.93 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+|+|||||+.|+|+|..|++.|.+|+++++++..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~ 35 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEK 35 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccc
Confidence 6899999999999999999999999999977654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0017 Score=66.75 Aligned_cols=101 Identities=22% Similarity=0.338 Sum_probs=72.7
Q ss_pred cEEEECCCHHHHHHHHHHHh----CCCcEEEEccCC--cch-------------------h-------------h-----
Q 011267 209 KVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPEN--HLL-------------------Q-------------R----- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~----~g~~V~lv~~~~--~~l-------------------~-------------~----- 245 (489)
.|+|||||+.|+-+|..|++ .|.+|+++++.+ ... + .
T Consensus 2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~~ 81 (437)
T TIGR01989 2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSDR 81 (437)
T ss_pred cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhhc
Confidence 58999999999999999998 799999999832 100 0 0
Q ss_pred ------------------hh--------------CHHHHHHHHHHHHhcC---cEEEEcCceEEEEEeC-----CCCcEE
Q 011267 246 ------------------LF--------------TPSLAQRYEQLYQQNG---VKFVKVGASIKNLEAG-----SDGRVA 285 (489)
Q Consensus 246 ------------------~~--------------~~~~~~~l~~~l~~~G---v~~~~~~~~v~~i~~~-----~~~~v~ 285 (489)
.+ ...+.+.+.+.+++.+ +++++ ++++++++.. +++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~-~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 82 IQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILN-PARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred CCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEec-CCeeEEEEeccccccCCCCce
Confidence 00 0123334455556654 99999 9999999742 122234
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.|++.+|+++.||+||-|-|....+
T Consensus 161 ~v~~~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 161 HITLSDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred EEEEcCCCEEEeeEEEEecCCCChh
Confidence 6888999999999999999997653
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00065 Score=69.84 Aligned_cols=72 Identities=15% Similarity=0.303 Sum_probs=55.2
Q ss_pred cEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 232 DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 232 ~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.-.++.+.+..+. +..+...+....++.|..++. ++.|+++....+ +..+|.+.-| .|+|..||-|+|++..
T Consensus 173 ~g~Ly~P~DG~~D---P~~lC~ala~~A~~~GA~viE-~cpV~~i~~~~~-~~~gVeT~~G-~iet~~~VNaaGvWAr 244 (856)
T KOG2844|consen 173 YGGLYSPGDGVMD---PAGLCQALARAASALGALVIE-NCPVTGLHVETD-KFGGVETPHG-SIETECVVNAAGVWAR 244 (856)
T ss_pred eeeeecCCCcccC---HHHHHHHHHHHHHhcCcEEEe-cCCcceEEeecC-CccceeccCc-ceecceEEechhHHHH
Confidence 3456667765443 335567788888999999999 999999986544 4448888888 5999999999998774
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0019 Score=65.56 Aligned_cols=99 Identities=19% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC----CcEEEEccCCcc------------------hh-------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK----LDTTIIFPENHL------------------LQ------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g----~~V~lv~~~~~~------------------l~------------------- 244 (489)
....|+|||||+.|+-+|..|++.| .+|+++++.+.. +.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 4468999999999999999999987 469999875210 00
Q ss_pred --h------------------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEE
Q 011267 245 --R------------------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTI 300 (489)
Q Consensus 245 --~------------------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~v 300 (489)
. .. -..+.+.+.+.+++.|++++. ++++++++..+++ + .+.+.++ +++.||+|
T Consensus 90 ~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~-~~~v~~~~~~~~~-v-~v~~~~~~g~~~i~a~lv 166 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLT-STTAHAPAQDADG-V-TLALGTPQGARTLRARIA 166 (398)
T ss_pred CCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEc-CCeeeeeeecCCe-E-EEEECCCCcceEEeeeEE
Confidence 0 00 134566777888888999999 9999999754443 2 4666654 58999999
Q ss_pred EEccCCC
Q 011267 301 VIGIGAK 307 (489)
Q Consensus 301 i~a~G~~ 307 (489)
|-|-|..
T Consensus 167 IgADG~~ 173 (398)
T PRK06996 167 VQAEGGL 173 (398)
T ss_pred EECCCCC
Confidence 9999964
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00023 Score=73.18 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=33.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
++|+|||||+|||+||+.|.+.|+ +|+|+|+.+..+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~---~v~vlEa~~r~GG 37 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASF---KVTLLESRDRIGG 37 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCc
Confidence 479999999999999999999886 6999999987653
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0002 Score=72.25 Aligned_cols=119 Identities=18% Similarity=0.300 Sum_probs=65.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC----CCCCCCC---ccccCCC------------CCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA----PYERPAL---TKGYLFP------------LDKKPAR 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~----~y~~~~l---~~~~~~~------------~~~~~~~ 110 (489)
..+||+|||||.||..||...++.|. ++.|+.-+... +.+ |.. .|+.+.. .+.....
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~---ktlLlT~~~dtig~msCN-PaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ 78 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGA---KTLLLTLNLDTIGEMSCN-PAIGGPGKGHLVREIDALGGLMGKAADKAGIQ 78 (621)
T ss_pred CCCceEEECCCccchHHHHhhhccCC---eEEEEEcCCCceeecccc-cccCCcccceeEEeehhccchHHHhhhhcCCc
Confidence 45999999999999999999999986 46666654321 111 111 1111100 0000000
Q ss_pred CCCCccccCCCC--------CCCChhHHH-----HCCcEEEeCCcEEEEeCCC----CEEEeCCCeEEeeCcEEecCCCC
Q 011267 111 LPGFHTCVGSGG--------ERQTPEWYK-----EKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 111 ~~~~~~~~~~~~--------~~~~~~~~~-----~~~i~~~~~~~V~~id~~~----~~v~~~~g~~i~yd~lvlATG~~ 173 (489)
+.-.....|... ...+..+++ ..|+.++.+ .|.++..++ .-|.+.+|..+.++.+||+||..
T Consensus 79 ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 79 FRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred hhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence 000000111100 000111221 247887764 677766533 35788999999999999999964
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0023 Score=64.70 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=70.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------------h-------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------------Q------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------------~------------------------- 244 (489)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+... .
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~ 82 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDGQ 82 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCCE
Confidence 579999999999999999999999999999775210 0
Q ss_pred -------h--------hhC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEcCEEEEccC
Q 011267 245 -------R--------LFT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDADTIVIGIG 305 (489)
Q Consensus 245 -------~--------~~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~aD~vi~a~G 305 (489)
. .++ ..+...+.+.+.+.|+++++ +.+++.+...++..+ .|.+. +|+ ++.+|+||-|-|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~V~~~~~g~~~~i~adlvIGADG 160 (390)
T TIGR02360 83 RFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVY-DADDVRLHDLAGDRP-YVTFERDGERHRLDCDFIAGCDG 160 (390)
T ss_pred EEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEE-eeeeEEEEecCCCcc-EEEEEECCeEEEEEeCEEEECCC
Confidence 0 000 12234455556667888888 888777753222222 46664 775 689999999999
Q ss_pred CCCC
Q 011267 306 AKPT 309 (489)
Q Consensus 306 ~~p~ 309 (489)
....
T Consensus 161 ~~S~ 164 (390)
T TIGR02360 161 FHGV 164 (390)
T ss_pred Cchh
Confidence 8764
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0024 Score=60.26 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=54.3
Q ss_pred CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc------CcEEEEcCceEEEEEeCCCCcEEEEEeCC--C--cEEEcCE
Q 011267 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN------GVKFVKVGASIKNLEAGSDGRVAAVKLED--G--STIDADT 299 (489)
Q Consensus 230 g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~------Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~--g--~~i~aD~ 299 (489)
|+.|---+|+.++++.. -++...+...+++. -+++.. +++|++|. ..+|+|.+|+..| | ..+.+|.
T Consensus 122 GHSvpRTHr~s~plppg--fei~~~L~~~l~k~as~~pe~~ki~~-nskvv~il-~n~gkVsgVeymd~sgek~~~~~~~ 197 (477)
T KOG2404|consen 122 GHSVPRTHRSSGPLPPG--FEIVKALSTRLKKKASENPELVKILL-NSKVVDIL-RNNGKVSGVEYMDASGEKSKIIGDA 197 (477)
T ss_pred CCCCCcccccCCCCCCc--hHHHHHHHHHHHHhhhcChHHHhhhh-cceeeeee-cCCCeEEEEEEEcCCCCccceecCc
Confidence 45554455777766643 23444444444432 377888 99999998 4678888888754 3 3588999
Q ss_pred EEEccCCCCC--Cchhhhc
Q 011267 300 IVIGIGAKPT--VSPFERV 316 (489)
Q Consensus 300 vi~a~G~~p~--~~~~~~~ 316 (489)
||+|+|.-.. .++|+..
T Consensus 198 VVlatGGf~ysd~~lLKey 216 (477)
T KOG2404|consen 198 VVLATGGFGYSDKELLKEY 216 (477)
T ss_pred eEEecCCcCcChHHHHHHh
Confidence 9999986544 3455554
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00058 Score=72.50 Aligned_cols=92 Identities=22% Similarity=0.261 Sum_probs=65.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceE-EE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASI-KN 275 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v-~~ 275 (489)
..+++|+|||+|++|+.+|..|++.|.+|+++++.+.+.. ..++.+..+.-.+.+++.|++++. ++.+ .+
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~-~~~~~~~ 213 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL-GVRVGED 213 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe-CCEECCc
Confidence 4578999999999999999999999999999997754311 113344445555667789999999 8765 33
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+... .+ ...+|.||+|+|..+.
T Consensus 214 ~~~~--------~~----~~~~D~Vi~AtG~~~~ 235 (564)
T PRK12771 214 ITLE--------QL----EGEFDAVFVAIGAQLG 235 (564)
T ss_pred CCHH--------HH----HhhCCEEEEeeCCCCC
Confidence 2210 00 1247999999998753
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0021 Score=65.55 Aligned_cols=98 Identities=20% Similarity=0.283 Sum_probs=67.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------h------------------hh-------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------R------------------LF------- 247 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------~------------------~~------- 247 (489)
+|+|||||+.|+-+|..|++.|.+|+++++.+.+.+ + .+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQRI 81 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCCEE
Confidence 689999999999999999999999999997742100 0 00
Q ss_pred -------------------CHHHHHHHHHHHHh-cC-cEEEEcCceEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEE
Q 011267 248 -------------------TPSLAQRYEQLYQQ-NG-VKFVKVGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIV 301 (489)
Q Consensus 248 -------------------~~~~~~~l~~~l~~-~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~aD~vi 301 (489)
-..+.+.+.+.+.+ .| +.+++ ++++++++.++++.+ +.+.++ +++.||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~-~~~v~~~~~~~~~~~--~~~~~~~~g~~~~~~adlvI 158 (413)
T PRK07538 82 WSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRT-GHRVVGFEQDADVTV--VFLGDRAGGDLVSVRGDVLI 158 (413)
T ss_pred eeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEc-CCEEEEEEecCCceE--EEEeccCCCccceEEeeEEE
Confidence 01122233333333 36 46899 999999986655533 333332 489999999
Q ss_pred EccCCCCC
Q 011267 302 IGIGAKPT 309 (489)
Q Consensus 302 ~a~G~~p~ 309 (489)
-|-|....
T Consensus 159 gADG~~S~ 166 (413)
T PRK07538 159 GADGIHSA 166 (413)
T ss_pred ECCCCCHH
Confidence 99998654
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00062 Score=73.02 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=66.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++++|||+|..|+.+|..|.+.|.+|+++++.+.+.. ..+..++.....+.+++.|++++. ++.|..-
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~~- 359 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHL-NTRVGKD- 359 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEEC-CCEeCCc-
Confidence 567899999999999999999999999999988764311 113445555556778899999999 8776320
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+..++ ....+|.||+|+|..+
T Consensus 360 ---------~~~~~-~~~~yD~vilAtGa~~ 380 (604)
T PRK13984 360 ---------IPLEE-LREKHDAVFLSTGFTL 380 (604)
T ss_pred ---------CCHHH-HHhcCCEEEEEcCcCC
Confidence 11111 1357999999999863
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00033 Score=73.42 Aligned_cols=43 Identities=21% Similarity=0.173 Sum_probs=35.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCC--CCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGM--ADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~--~~~~V~li~~~~~~~ 90 (489)
+++.+||+|||||+|||+||..|++.|. +..+|+|+|+.....
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcC
Confidence 4556899999999999999999999871 124799999988754
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00036 Score=72.91 Aligned_cols=38 Identities=18% Similarity=0.414 Sum_probs=33.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+..+||+|||||++|+++|..|++.|. +|+|+|+.+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~---~V~vlEr~~~ 77 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGR---RVHVIERDLR 77 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCC---eEEEEECcCC
Confidence 4457899999999999999999999987 7999999754
|
|
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00035 Score=69.58 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++||+|||||+||+++|..|++.|. +|+|+|+.++.+
T Consensus 1 ~~DvvIIGaG~aGlsaA~~La~~G~---~V~viEk~~~iG 37 (377)
T TIGR00031 1 MFDYIIVGAGLSGIVLANILAQLNK---RVLVVEKRNHIG 37 (377)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC
Confidence 3699999999999999999998875 799999987654
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0031 Score=66.53 Aligned_cols=99 Identities=24% Similarity=0.320 Sum_probs=72.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------------------------------------- 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-------------------------------------------- 242 (489)
...|+|||+|..|+-+|..+++.|.+|.++++....
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~~ 95 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRSL 95 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 357999999999999999999999999998765210
Q ss_pred -----------------hh------------------h-------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 243 -----------------LQ------------------R-------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 243 -----------------l~------------------~-------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
+. + ..+..+...+.+.+++.||+++. ++.++++..++
T Consensus 96 ~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~-~~~v~~Li~~~ 174 (541)
T PRK07804 96 VAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIRE-HALALDLLTDG 174 (541)
T ss_pred HHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEE-CeEeeeeEEcC
Confidence 00 0 01123445566677778899999 99999997655
Q ss_pred CCcEEEEEeC-------CC-cEEEcCEEEEccCC
Q 011267 281 DGRVAAVKLE-------DG-STIDADTIVIGIGA 306 (489)
Q Consensus 281 ~~~v~~v~~~-------~g-~~i~aD~vi~a~G~ 306 (489)
++++.++... ++ ..+.|+.||+|+|.
T Consensus 175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 5677777653 22 36899999999995
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00078 Score=68.08 Aligned_cols=96 Identities=22% Similarity=0.345 Sum_probs=67.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC------------------------------------------cchhh
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN------------------------------------------HLLQR 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~------------------------------------------~~l~~ 245 (489)
-.|+|||||..|+|+|.+.++.|.++.++.... ++|..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~ 84 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS 84 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence 469999999999999999999998887764330 11111
Q ss_pred h-----------hCH-HHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 246 L-----------FTP-SLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 246 ~-----------~~~-~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
. .|. .+...+++.++. .++.++. ..|+++...++.++.+|.+.+|..+.|+.||++||
T Consensus 85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q--~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTG 155 (621)
T COG0445 85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQ--GEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTG 155 (621)
T ss_pred CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehH--hhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeec
Confidence 1 111 223444454443 4667665 66777764434468899999999999999999999
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00035 Score=69.94 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=31.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.||+|||||++|+.||..|++.|+ +|+|+|..+.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl---~V~LiE~rp~ 36 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGV---PVELYEMRPV 36 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCC---cEEEEEccCc
Confidence 4699999999999999999999987 6999997654
|
|
| >KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00039 Score=68.97 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=34.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+|||||||+|||+||.+|.++|+. +++|+|.+...+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~--~~~IlEa~dRIG 58 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFI--DVLILEASDRIG 58 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCc--eEEEEEeccccC
Confidence 456899999999999999999999874 899999988764
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00037 Score=70.33 Aligned_cols=36 Identities=19% Similarity=0.199 Sum_probs=32.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|+|||+|||+||+.|+++|+ +|||+|..+..+
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~---~vt~~ea~~~~G 36 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGY---DVTLYEARDRLG 36 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCC---ceEEEeccCccC
Confidence 479999999999999999999998 799999987754
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0044 Score=62.66 Aligned_cols=96 Identities=21% Similarity=0.382 Sum_probs=67.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccc-----------hh---------------------h----------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL-----------LQ---------------------R---------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~-----------l~---------------------~---------- 245 (489)
.|+|||+|+.|+-+|..|++.|.+|.++++. ++. +. .
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIPS 81 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccCC
Confidence 5899999999999999999999999999876 210 00 0
Q ss_pred ---h---hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC------C--cEEEcCEEEEccCCCC
Q 011267 246 ---L---FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED------G--STIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ---~---~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~------g--~~i~aD~vi~a~G~~p 308 (489)
. ++ ..+-+.+.+...+.|++++. + .++++..+++ .+ .+.+.+ | .++.||.||.|.|...
T Consensus 82 ~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~-~-~v~~v~~~~~-~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S 155 (388)
T TIGR02023 82 EDGYVGMVRREVFDSYLRERAQKAGAELIH-G-LFLKLERDRD-GV-TLTYRTPKKGAGGEKGSVEADVVIGADGANS 155 (388)
T ss_pred CCCceEeeeHHHHHHHHHHHHHhCCCEEEe-e-EEEEEEEcCC-eE-EEEEEeccccCCCcceEEEeCEEEECCCCCc
Confidence 0 01 12223455666778999977 5 6888875443 32 355442 2 3799999999999765
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0045 Score=64.15 Aligned_cols=98 Identities=29% Similarity=0.399 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc---------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------------------------- 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------------------------------------- 242 (489)
..|+|||+|..|+-+|..+++.|.+|.++++....
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 46899999999999999999999999998764110
Q ss_pred ---------------hh-----------h------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 243 ---------------LQ-----------R------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 243 ---------------l~-----------~------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+. + .....+.+.+.+.+++.|++++. + .++.+.. +++++.++..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~-~-~v~~l~~-~~g~v~Gv~~- 157 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIR-G-FAEELAI-KNGKAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEE-e-EeEEEEe-eCCEEEEEEE-
Confidence 00 0 00123445556666778888887 5 6777764 3567766766
Q ss_pred CCcEEEcCEEEEccCCCCC
Q 011267 291 DGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~ 309 (489)
+++.+.++.||+|||....
T Consensus 158 ~g~~i~a~~VVLATGG~~~ 176 (466)
T PRK08401 158 DGELLKFDATVIATGGFSG 176 (466)
T ss_pred CCEEEEeCeEEECCCcCcC
Confidence 4568999999999997654
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0049 Score=62.51 Aligned_cols=99 Identities=19% Similarity=0.311 Sum_probs=65.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------hh------h------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------QR------L------------------------ 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------~~------~------------------------ 246 (489)
+|+|||+|+.|+-+|..|++.|.+|.++++..... .. .
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~~ 81 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRTL 81 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccCC
Confidence 68999999999999999999999999998763210 00 0
Q ss_pred --------hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeC-CCCcEEEEEe--CC-----C--cEEEcCEEEEccCCC
Q 011267 247 --------FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAG-SDGRVAAVKL--ED-----G--STIDADTIVIGIGAK 307 (489)
Q Consensus 247 --------~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~~~v~~v~~--~~-----g--~~i~aD~vi~a~G~~ 307 (489)
++ ..+-+.+.+...+.|++++. + .+..+... ..+....|++ .+ | .++.|+.||.|.|..
T Consensus 82 ~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~-~-~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 82 KEHEYIGMLRREVLDSFLRRRAADAGATLIN-G-LVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCceeeeeHHHHHHHHHHHHHHCCcEEEc-c-eEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcc
Confidence 00 11223355566778999987 6 46666421 1122223432 21 3 479999999999987
Q ss_pred CC
Q 011267 308 PT 309 (489)
Q Consensus 308 p~ 309 (489)
+.
T Consensus 160 S~ 161 (398)
T TIGR02028 160 SR 161 (398)
T ss_pred hH
Confidence 63
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00049 Score=74.11 Aligned_cols=40 Identities=23% Similarity=0.377 Sum_probs=35.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
....++|+|||||+||++||..|++.|+ +|+|+|+.+...
T Consensus 157 ~~~~~~v~viGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 196 (738)
T PLN02529 157 EGTEGSVIIVGAGLAGLAAARQLLSFGF---KVVVLEGRNRPG 196 (738)
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHcCC---cEEEEecCccCc
Confidence 3467899999999999999999999987 699999987654
|
|
| >KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00094 Score=72.17 Aligned_cols=91 Identities=23% Similarity=0.325 Sum_probs=70.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+++|.|||+|+.|+.+|..|.+.|+.|++++|.+++.. -.+|..+.++-.+++.+.||+|++ |++|-+-
T Consensus 1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~t-n~eigk~- 1861 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVT-NTEIGKH- 1861 (2142)
T ss_pred cCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEe-ecccccc-
Confidence 468999999999999999999999999999999987522 114666777777899999999999 8755221
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+. -|+-.-+.|.||+|+|..-
T Consensus 1862 ---------vs-~d~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 ---------VS-LDELKKENDAIVLATGSTT 1882 (2142)
T ss_pred ---------cc-HHHHhhccCeEEEEeCCCC
Confidence 11 2332345688999999863
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00048 Score=72.05 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEccCCCCCCchhh
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~aD~vi~a~G~~p~~~~~~ 314 (489)
..+...+.+..++.|++++. +++|+++..+ ++. ..+.+.+ |+ ++.|+.||.|+|...+ .++.
T Consensus 155 ~rl~~~l~~~A~~~Ga~i~~-~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~-~l~~ 221 (508)
T PRK12266 155 ARLVVLNARDAAERGAEILT-RTRVVSARRE-NGL-WHVTLEDTATGKRYTVRARALVNAAGPWVK-QFLD 221 (508)
T ss_pred HHHHHHHHHHHHHcCCEEEc-CcEEEEEEEe-CCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHH-HHHh
Confidence 45555666678889999999 9999999754 333 3455443 43 6899999999998764 4433
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0066 Score=60.46 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=66.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------hhhhCH-------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QRLFTP------------------------------- 249 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------~~~~~~------------------------------- 249 (489)
.|+|||+|+.|+-+|..|++. .+|+++++.+.+. ...+.+
T Consensus 3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~ 81 (351)
T PRK11445 3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL 81 (351)
T ss_pred eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence 589999999999999999999 9999999765210 000000
Q ss_pred ------------------HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccCCCC
Q 011267 250 ------------------SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 250 ------------------~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.+.+ ..+.|++++. ++.++.++..+++ + .|.+ ++|+ ++.||.||.|.|...
T Consensus 82 ~~~~~~~~~~~~~~i~R~~~~~~L~~-~~~~gv~v~~-~~~v~~i~~~~~~-~-~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 82 ANSLTRNYQRSYINIDRHKFDLWLKS-LIPASVEVYH-NSLCRKIWREDDG-Y-HVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred cccchhhcCCCcccccHHHHHHHHHH-HHhcCCEEEc-CCEEEEEEEcCCE-E-EEEEecCCcEEEEEeCEEEECCCCCc
Confidence 01111222 2346899999 9999999865444 2 3444 5664 689999999999865
Q ss_pred C
Q 011267 309 T 309 (489)
Q Consensus 309 ~ 309 (489)
.
T Consensus 158 ~ 158 (351)
T PRK11445 158 M 158 (351)
T ss_pred H
Confidence 4
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00054 Score=71.65 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEccCCCCCCchhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
+..+...+....++.|++++. ++.|+++..+ ++ ...|.+.++ .++.|+.||.|+|.... .++.
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~-~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~-~l~~ 220 (502)
T PRK13369 154 DARLVVLNALDAAERGATILT-RTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVT-DVIH 220 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEec-CcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHH-HHHh
Confidence 445666667778889999999 9999999854 23 234665554 35999999999998764 4433
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00054 Score=71.61 Aligned_cols=56 Identities=20% Similarity=0.402 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-----cEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-----~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|.++++ ++.|++|..+ ++++..+.+.++ +++.+|.||+++..
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~-~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~ 292 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLT-GQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVANLPP 292 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeC-CceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEECCCH
Confidence 46778888999999999999 9999999864 345556666554 57999999999874
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PF14721 AIF_C: Apoptosis-inducing factor, mitochondrion-associated, C-term; PDB: 3GD4_A 1GV4_A 3GD3_A 1M6I_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0017 Score=52.18 Aligned_cols=33 Identities=12% Similarity=0.273 Sum_probs=25.2
Q ss_pred CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHh
Q 011267 423 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 456 (489)
Q Consensus 423 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 456 (489)
.+-++||+++++|+|+++ .|--..+...|++|+
T Consensus 99 ~kGVVfYLrd~~VvGill-WNvf~~~~~AR~ii~ 131 (133)
T PF14721_consen 99 GKGVVFYLRDDRVVGILL-WNVFNRMPIARKIIA 131 (133)
T ss_dssp SEEEEEEEETTEEEEEEE-ES--S-HHHHHHHHH
T ss_pred CceEEEEEcCCeEEEEEE-eeccCccHHHHHHhh
Confidence 356789999999999997 677778888888875
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0048 Score=63.31 Aligned_cols=64 Identities=14% Similarity=0.201 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCC-CCcEEEEEeCC-CcEEEcCEEEEccCCC-CCCchhhh
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGS-DGRVAAVKLED-GSTIDADTIVIGIGAK-PTVSPFER 315 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~~~-g~~i~aD~vi~a~G~~-p~~~~~~~ 315 (489)
+.+.+.+.+++.|+++++ ++.++++..++ ++++.++...+ +.++.++.||+|+|-- .|.+++.+
T Consensus 125 l~~~L~~~a~~~Gv~i~~-~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~~n~~~~~~ 191 (432)
T TIGR02485 125 LTNALYSSAERLGVEIRY-GIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLGANRDWLRK 191 (432)
T ss_pred HHHHHHHHHHHcCCEEEe-CCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcccCHHHHHh
Confidence 445556667788999999 99999998653 56777776543 3579999999999954 44445544
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00056 Score=72.00 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+..+||+|||||++|+++|..|++.|. +|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~---~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGR---KVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCC---EEEEEcccc
Confidence 356899999999999999999999987 799999875
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0066 Score=64.62 Aligned_cols=52 Identities=25% Similarity=0.311 Sum_probs=39.0
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+++.||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|...
T Consensus 135 L~~~~~~~gv~i~~-~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~ 191 (566)
T TIGR01812 135 LYEQCLKLGVSFFN-EYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGGYG 191 (566)
T ss_pred HHHHHHHcCCEEEe-ccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence 44455667999999 9999999754 577776654 3564 589999999999643
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00064 Score=72.37 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=32.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
|.+.||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 1 ~~~~DVlVVG~G~AGl~AAi~Aa~~G~---~V~lieK~~~ 37 (589)
T PRK08641 1 MAKGKVIVVGGGLAGLMATIKAAEAGV---HVDLFSLVPV 37 (589)
T ss_pred CCCccEEEECchHHHHHHHHHHHHcCC---cEEEEEccCC
Confidence 346799999999999999999999876 7999998653
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00069 Score=72.08 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++.+|+|||||++|+++|..|++.|+ +|+|+|+.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi---~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGF---DVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCC---eEEEEeccc
Confidence 46799999999999999999999987 799999875
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0074 Score=64.44 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=35.7
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~ 307 (489)
.||+++. ++.++++..++++++.+|... +|+ .+.|+.||+|||--
T Consensus 146 ~gV~i~~-~t~v~~Li~dd~grV~GV~~~~~~~g~~~~i~AkaVVLATGG~ 195 (603)
T TIGR01811 146 GLVEKYE-GWEMLDIIVVDGNRARGIIARNLVTGEIETHSADAVILATGGY 195 (603)
T ss_pred CCcEEEe-CcEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence 3799999 999999876556688888764 453 58899999999973
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00091 Score=69.87 Aligned_cols=57 Identities=23% Similarity=0.284 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
..+.+.+.+.+++.|+++++ ++.|++|..+ ++++..|++.+|+++.+|.||+++|..
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~-~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~ 285 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRY-RARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW 285 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEe-CCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence 46778888999999999999 9999999854 567788999999999999999998854
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.004 Score=65.27 Aligned_cols=127 Identities=22% Similarity=0.436 Sum_probs=86.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcc------hhhhhC-----HHHHHHHHHHHHhcCcEEEEcCce
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHL------LQRLFT-----PSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~------l~~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..+++|||.|..|.-....+.+. -.++|++...+++ +.+.+. +++.-.-.++.+++||+++. +..
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~-~~~ 81 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYT-GEK 81 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEc-CCe
Confidence 46799999999998888888773 3468887655432 222222 23444455788999999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccc
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~ 346 (489)
++.|... .+ .|+.+.|.++.+|.+|+|||..|.........+. ++.+ +| +..+++|++|++.
T Consensus 82 v~~idr~--~k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~----~v~~---~R-~i~D~~am~~~ar 143 (793)
T COG1251 82 VIQIDRA--NK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLP----GVFV---YR-TIDDVEAMLDCAR 143 (793)
T ss_pred eEEeccC--cc--eEEccCCcEeecceeEEecCccccccCCCCCCCC----CeeE---Ee-cHHHHHHHHHHHh
Confidence 9999743 33 5788899999999999999999976543332211 1211 11 2356666666654
|
|
| >KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=64.12 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=35.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+|+|+|||.+||++|++|++.+. +..|+|+|..+...
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p-~~~i~l~Ea~~RvG 49 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGP-DVTITLFEASPRVG 49 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCC-CceEEEEecCCccc
Confidence 45789999999999999999999986 78899999988765
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.01 Score=60.97 Aligned_cols=108 Identities=19% Similarity=0.268 Sum_probs=69.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------------h------hh----------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------------Q------RL---------------------- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------------~------~~---------------------- 246 (489)
.-.|+|||||+.|+-+|..|++.|.+|.++++..... . ..
T Consensus 39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~~~~ 118 (450)
T PLN00093 39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGK 118 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEEecc
Confidence 4579999999999999999999999999998763210 0 00
Q ss_pred ----------hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcEEEEEeCC-------C--cEEEcCEEEEccC
Q 011267 247 ----------FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRVAAVKLED-------G--STIDADTIVIGIG 305 (489)
Q Consensus 247 ----------~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~~~-------g--~~i~aD~vi~a~G 305 (489)
++ ..+.+.+.+..++.|++++. + .++++....+ +....|.+.+ | .++.||.||-|.|
T Consensus 119 ~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~-~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG 196 (450)
T PLN00093 119 TLKPHEYIGMVRREVLDSFLRERAQSNGATLIN-G-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGADG 196 (450)
T ss_pred cCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEe-c-eEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcCC
Confidence 00 11223455666778999977 5 5777753211 1112344321 3 4799999999999
Q ss_pred CCCCCchhhhcCC
Q 011267 306 AKPTVSPFERVGL 318 (489)
Q Consensus 306 ~~p~~~~~~~~gl 318 (489)
... .+.+.+++
T Consensus 197 ~~S--~vrr~lg~ 207 (450)
T PLN00093 197 ANS--RVAKDIDA 207 (450)
T ss_pred cch--HHHHHhCC
Confidence 855 33344443
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=62.60 Aligned_cols=57 Identities=21% Similarity=0.274 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+.+.+++.||+++. ++.++++..++++++.++.. .+|+ .+.++.||+|+|...
T Consensus 139 i~~~L~~~~~~~gv~i~~-~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~ 200 (554)
T PRK08275 139 IKKVLYRQLKRARVLITN-RIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGAAG 200 (554)
T ss_pred HHHHHHHHHHHCCCEEEc-ceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCCcc
Confidence 344555666778999999 99999998654677777653 3564 588999999999854
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0014 Score=68.18 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=35.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
....+||+|||||++||+||++|++.|.. +|+|+|+.....
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~--~v~vlE~~~~~G 63 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIE--DILILEATDRIG 63 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCC--cEEEecCCCCCC
Confidence 34578999999999999999999999752 699999987654
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.011 Score=61.79 Aligned_cols=100 Identities=24% Similarity=0.264 Sum_probs=66.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------------------------------- 245 (489)
..+|+|||+|..|+-+|..|++.|.+|+++++......+
T Consensus 43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~~g~ 122 (514)
T PLN02985 43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYKDGK 122 (514)
T ss_pred CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEECCE
Confidence 347999999999999999999999999999976210000
Q ss_pred ---------------------hhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEe--CCCc--EEEcCE
Q 011267 246 ---------------------LFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKL--EDGS--TIDADT 299 (489)
Q Consensus 246 ---------------------~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g~--~i~aD~ 299 (489)
.....+.+.+.+.+++. ||+++. + +++++..+ ++.+.+|++ .+|+ ++.||+
T Consensus 123 ~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~-g-tvv~li~~-~~~v~gV~~~~~dG~~~~~~AdL 199 (514)
T PLN02985 123 EAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEE-G-TVKSLIEE-KGVIKGVTYKNSAGEETTALAPL 199 (514)
T ss_pred EEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEe-e-eEEEEEEc-CCEEEEEEEEcCCCCEEEEECCE
Confidence 00112334445555444 688877 5 56666533 455545554 4565 367999
Q ss_pred EEEccCCCCC
Q 011267 300 IVIGIGAKPT 309 (489)
Q Consensus 300 vi~a~G~~p~ 309 (489)
||.|.|....
T Consensus 200 VVgADG~~S~ 209 (514)
T PLN02985 200 TVVCDGCYSN 209 (514)
T ss_pred EEECCCCchH
Confidence 9999998764
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0032 Score=64.66 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=27.5
Q ss_pred EEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 56 IVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 56 IIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
|||+|.||++||.++++.|. +|+|||+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga---~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGA---SVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCC---cEEEEeCCCC
Confidence 79999999999999999976 7999999864
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00081 Score=65.20 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeC-CCCcEEEEEeCC--Cc----EEEcCEEEEccCCCCCCchhhhcCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAG-SDGRVAAVKLED--GS----TIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~~~v~~v~~~~--g~----~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
...++...+++.++++++ ++.|++|..+ +++++++|++.+ +. .+.++.||+|.|..-...+|..+|+
T Consensus 195 ~~~~L~~a~~~~n~~l~~-~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi 268 (296)
T PF00732_consen 195 ATTYLPPALKRPNLTLLT-NARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI 268 (296)
T ss_dssp HHHHHHHHTTTTTEEEEE-SEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred hhcccchhhccCCccEEc-CcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence 345666767666999999 9999999542 466777777643 33 5778999999997655477878777
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0069 Score=59.50 Aligned_cols=101 Identities=25% Similarity=0.414 Sum_probs=71.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhh----------CHHHHHHHHHHHHhc--CcEEEEcCceE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLF----------TPSLAQRYEQLYQQN--GVKFVKVGASI 273 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~----------~~~~~~~l~~~l~~~--Gv~~~~~~~~v 273 (489)
+.++|+|+|+|..|+-+...|-..-.+|++|.+++.++-.-+ -..+.+.+....++. +++++. +.-
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~e--Aec 131 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLE--AEC 131 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccccccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEe--ccc
Confidence 568999999999999999998888899999999876532111 235666666666655 566655 566
Q ss_pred EEEEeCCCCcEEEEE--eCCC----cEEEcCEEEEccCCCCCC
Q 011267 274 KNLEAGSDGRVAAVK--LEDG----STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~--~~~g----~~i~aD~vi~a~G~~p~~ 310 (489)
..+++ +.+.+.++ ++++ ..+.+|.+|+|+|..|++
T Consensus 132 ~~iDp--~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~T 172 (491)
T KOG2495|consen 132 TKIDP--DNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNT 172 (491)
T ss_pred Eeecc--cccEEEEeeeccCCCcceeeecccEEEEeccCCCCC
Confidence 66653 23322222 3344 368999999999999886
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=62.87 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=40.0
Q ss_pred HHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCC
Q 011267 252 AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGA 306 (489)
Q Consensus 252 ~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~ 306 (489)
...+.+.+++.||+++. ++.++++..+ ++++.+|... +|+ .+.|+.||+|||-
T Consensus 139 ~~~L~~~~~~~gv~i~~-~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 139 LHTLFERTSGLNVDFYN-EWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHhCCCEEEe-CcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 33455556667999999 9999999854 6888887764 332 5789999999994
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=63.63 Aligned_cols=51 Identities=22% Similarity=0.326 Sum_probs=39.2
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~ 307 (489)
+.+.+++.||+++. ++.++++..+ ++++.+|... +|+ .+.|+.||+|||--
T Consensus 176 L~~~~~~~gV~i~~-~t~v~~Li~d-~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG~ 231 (640)
T PRK07573 176 LSRQIAAGTVKMYT-RTEMLDLVVV-DGRARGIVARNLVTGEIERHTADAVVLATGGY 231 (640)
T ss_pred HHHHHHhcCCEEEe-ceEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCEEEECCCCc
Confidence 33455678999999 9999998753 5788887764 453 58999999999963
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.012 Score=60.40 Aligned_cols=56 Identities=9% Similarity=0.221 Sum_probs=39.9
Q ss_pred HHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEE-eCCCc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVK-LEDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~-~~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+.+.+++ .||++++ ++.++++..+ ++++.++. ..+++ ++.|+.||+|+|.-.
T Consensus 130 l~~~L~~~~~~~~gV~i~~-~t~v~~Li~~-~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~~ 189 (433)
T PRK06175 130 VEKILLKKVKKRKNITIIE-NCYLVDIIEN-DNTCIGAICLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred HHHHHHHHHHhcCCCEEEE-CcEeeeeEec-CCEEEEEEEEECCcEEEEEcCeEEEccCccc
Confidence 34445555554 5999999 9999998743 56666654 33454 589999999999743
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0014 Score=65.07 Aligned_cols=39 Identities=23% Similarity=0.293 Sum_probs=35.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+...||+|||+|++||++|+.|.+.|+ +|+|+|..+...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~---~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGY---QVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCc---EEEEEeccCCcC
Confidence 567899999999999999999999998 699999988764
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0098 Score=62.28 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 7 ~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~d 39 (502)
T PRK13369 7 YDLFVIGGGINGAGIARDAAGRGLKVLLCEKDD 39 (502)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 469999999999999999999999999999874
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0019 Score=70.77 Aligned_cols=34 Identities=18% Similarity=0.109 Sum_probs=32.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+++|+|||+|+.|+.+|..|++.|++|+++++.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 5789999999999999999999999999999975
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.01 Score=61.84 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCC-C--cEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLED-G--STIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g--~~i~aD~vi~a~G~~p~ 309 (489)
.+...+.+.+++ .||+++. ++.++++..+ ++++.++...+ + ..+.++.||+|+|....
T Consensus 129 ~l~~~L~~~~~~~~gi~i~~-~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 129 EVITTLVKKALNHPNIRIIE-GENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGAGK 190 (488)
T ss_pred HHHHHHHHHHHhcCCcEEEE-CeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence 344556666666 6899999 9999999753 56676666544 3 36899999999998654
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0047 Score=61.29 Aligned_cols=33 Identities=39% Similarity=0.489 Sum_probs=28.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.-.|+|||||..|+|.|.+.++.|.+.+++...
T Consensus 28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred cccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 457999999999999999999999887776543
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0017 Score=68.11 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=32.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
..+||||||+| ||++||.++++.|. +|+|||+.+...
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~---~V~vlEk~~~~G 42 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGL---SVALVEATDKFG 42 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCC---cEEEEecCCCCC
Confidence 47899999999 99999999999986 799999987643
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0015 Score=70.36 Aligned_cols=37 Identities=16% Similarity=0.159 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+||||||||.||++||.++++.|. +|+||++.+.
T Consensus 3 ~~~~DVlVIG~G~AGl~AAi~Aae~G~---~VivleK~~~ 39 (657)
T PRK08626 3 IIYTDALVIGAGLAGLRVAIAAAQRGL---DTIVLSLVPA 39 (657)
T ss_pred ceeccEEEECccHHHHHHHHHHHHcCC---CEEEEeCCCC
Confidence 346899999999999999999999876 7999998653
|
|
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0042 Score=59.22 Aligned_cols=101 Identities=27% Similarity=0.404 Sum_probs=78.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccc-----------hhhhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHL-----------LQRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~-----------l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..-.|+|||||+.|...|-..++.|.+.-++..+ .+. .+...++++...++++.++..|+++. -.+
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDimn-~qr 288 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVMN-LQR 288 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhhh-hhh
Confidence 3457999999999999999999998765443221 111 11235788999999999999999988 888
Q ss_pred EEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 273 IKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 273 v~~i~~~~-~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.+++++.. .+....|++++|-.+++..+|++||.+
T Consensus 289 a~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGAr 324 (520)
T COG3634 289 ASKLEPAAVEGGLIEVELANGAVLKARTVILATGAR 324 (520)
T ss_pred hhcceecCCCCccEEEEecCCceeccceEEEecCcc
Confidence 88887632 244568999999999999999999975
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.012 Score=62.69 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=33.0
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
....+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456789999999999999999999999999999864
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0015 Score=69.98 Aligned_cols=36 Identities=31% Similarity=0.512 Sum_probs=32.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||+|.||++||.++++.|. +|+|||+.+.
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~G~---~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARERGL---RVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHCCC---CEEEEeccCC
Confidence 45799999999999999999999876 7999999753
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0041 Score=61.92 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=54.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------hhCHH------HHHHHHHHHHhcCcEEEEcCceEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPS------LAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------~~~~~------~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.++++|||||..|++.|..|++.|.+|+++++.+.+..+ .|+.. +...+.+.-..-.|++++ .++|+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~T-yaeV~ 202 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELIT-YAEVE 202 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeee-eeeee
Confidence 468999999999999999999999999999999866432 12221 223344555567899999 99999
Q ss_pred EEE
Q 011267 275 NLE 277 (489)
Q Consensus 275 ~i~ 277 (489)
++.
T Consensus 203 ev~ 205 (622)
T COG1148 203 EVS 205 (622)
T ss_pred eec
Confidence 986
|
|
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0016 Score=66.97 Aligned_cols=37 Identities=27% Similarity=0.401 Sum_probs=29.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
||||||||+||..+|..|++.+.+..+|+|||++...
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~ 37 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP 37 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence 7999999999999999999998534799999998653
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0022 Score=60.58 Aligned_cols=38 Identities=26% Similarity=0.312 Sum_probs=34.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
++|++|||+|.+|+.+|..|.++|. +|.|||+.++.+.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk---~VLIvekR~HIGG 38 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGK---RVLIVEKRNHIGG 38 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCC---EEEEEeccccCCC
Confidence 4799999999999999998888886 7999999998753
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.015 Score=60.95 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=31.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.-.|+|||||.+|+-+|..|+++|.+|.++++.+
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d 39 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD 39 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3579999999999999999999999999999863
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.019 Score=61.48 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=67.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchhhh---------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQRL--------------------------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~~~--------------------------------------- 246 (489)
..|+|||+|..|+-+|..+++. |.+|.++++.+......
T Consensus 12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~lv~ 91 (608)
T PRK06854 12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVREDLVY 91 (608)
T ss_pred eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHHHHH
Confidence 4699999999999999999998 99999988653100000
Q ss_pred -------------------h-------------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEE
Q 011267 247 -------------------F-------------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 247 -------------------~-------------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
| +..+...+.+.+++.| |+++. ++.+.++..+ ++++.+|
T Consensus 92 ~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~-~~~v~~Li~~-~g~v~Gv 169 (608)
T PRK06854 92 DIARHVDSVVHLFEEWGLPIWKDENGKYVRRGRWQIMINGESYKPIVAEAAKKALGDNVLN-RVFITDLLVD-DNRIAGA 169 (608)
T ss_pred HHHHhHHHHHHHHHHcCCeeeecCCCCccccCCccCCCChHHHHHHHHHHHHhcCCCEEEe-CCEEEEEEEe-CCEEEEE
Confidence 0 0112223334455555 99999 9999998743 4666666
Q ss_pred Ee---CCCc--EEEcCEEEEccCCC
Q 011267 288 KL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 288 ~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
.. .+++ .+.|+.||+|+|..
T Consensus 170 ~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 170 VGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred EEEEccCCcEEEEECCEEEECCCch
Confidence 42 3554 68999999999953
|
|
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0042 Score=57.36 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=29.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
+|+|||+|+.|+.+|..|+..|.+|++++++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg 33 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG 33 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcC
Confidence 5899999999999999999999999999987
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0019 Score=68.44 Aligned_cols=35 Identities=26% Similarity=0.461 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||+|.||++||.++++.|. +|+|||+.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~---~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGK---RVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCC
Confidence 46899999999999999999999986 699999987
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0023 Score=69.47 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++|++||+.|.+.|+ +|+|+|+....+
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~---~v~v~E~~~r~G 274 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGF---KVVVLEGRARPG 274 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeccccCC
Confidence 456899999999999999999999887 699999987654
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0019 Score=65.10 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=30.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|+|||||+||+.||..|++.|. +|+|+|..+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~---~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV---PVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC---cEEEEecccc
Confidence 379999999999999999999987 7999997654
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.022 Score=61.33 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=70.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcchh----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQ---------------------------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~l~---------------------------------------- 244 (489)
....|+|||+|+.|+.+|..|+++ |.+|.++++.+....
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~~ 110 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKPD 110 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcCC
Confidence 356899999999999999999995 999999987621100
Q ss_pred -----h------h--------------hC-HHHHHHHHHHHHhcC--cEEEEcCceEEEEEeCCCC-cEEEEEeC-----
Q 011267 245 -----R------L--------------FT-PSLAQRYEQLYQQNG--VKFVKVGASIKNLEAGSDG-RVAAVKLE----- 290 (489)
Q Consensus 245 -----~------~--------------~~-~~~~~~l~~~l~~~G--v~~~~~~~~v~~i~~~~~~-~v~~v~~~----- 290 (489)
. . +. ..+.+.+.+.+++.| +++.. ++++++++.++++ ..+.+++.
T Consensus 111 ~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~-g~~v~~~~~~~~~~~~V~v~l~~~~~~ 189 (634)
T PRK08294 111 PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDY-GREFVDLEVDEEGEYPVTVTLRRTDGE 189 (634)
T ss_pred CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEe-CcEEEEEEECCCCCCCEEEEEEECCCC
Confidence 0 0 00 123344556666665 57788 9999999865332 22245553
Q ss_pred -CC--cEEEcCEEEEccCCCCC
Q 011267 291 -DG--STIDADTIVIGIGAKPT 309 (489)
Q Consensus 291 -~g--~~i~aD~vi~a~G~~p~ 309 (489)
+| +++.||.||-|-|.+..
T Consensus 190 ~~g~~~tv~A~~lVGaDGa~S~ 211 (634)
T PRK08294 190 HEGEEETVRAKYVVGCDGARSR 211 (634)
T ss_pred CCCceEEEEeCEEEECCCCchH
Confidence 35 57999999999997543
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.019 Score=61.10 Aligned_cols=56 Identities=16% Similarity=0.268 Sum_probs=41.6
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+...+.+.+++.||+++. ++.++++.. +++++.++.. .+|+ .+.|+.||+|+|...
T Consensus 137 i~~~L~~~~~~~gi~i~~-~t~v~~L~~-~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 137 ILHELVNNLRRYGVTIYD-EWYVMRLIL-EDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred HHHHHHHHHhhCCCEEEe-CcEEEEEEE-ECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCc
Confidence 344566667778999999 999999874 3567666653 4554 589999999999754
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0019 Score=69.03 Aligned_cols=35 Identities=31% Similarity=0.431 Sum_probs=31.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~li~~~~~ 88 (489)
.+||||||||.||++||.++++. |. +|+|||+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~---~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDL---KVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCC---eEEEEECCCc
Confidence 57999999999999999999997 54 7999999764
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0026 Score=67.71 Aligned_cols=67 Identities=21% Similarity=0.300 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEcC-EEEEccCCC-CCCchhhh
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDAD-TIVIGIGAK-PTVSPFER 315 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~aD-~vi~a~G~~-p~~~~~~~ 315 (489)
...+...+.+..++.|+++++ ++.++++..+++++|++|.... ++ ++.++ .||+|+|-- -|.+++++
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~-~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf~~N~em~~~ 283 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWL-DSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGFDHDMDWRKE 283 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEe-CCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcccCCHHHHHH
Confidence 445666677788889999999 9999999876678888876643 33 47787 588888754 44445444
|
|
| >KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0037 Score=60.43 Aligned_cols=98 Identities=14% Similarity=0.185 Sum_probs=71.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
-+++++|||||.-||..+--..+.|- +||+||--++..-. .+. .+ ....+..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~rLGs---eVT~VEf~~~i~~~---------mD~-----Ei-----------sk~~qr~ 261 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSRLGS---EVTVVEFLDQIGGV---------MDG-----EI-----------SKAFQRV 261 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHhcCC---eEEEEEehhhhccc---------cCH-----HH-----------HHHHHHH
Confidence 36789999999999999998889875 89999965543110 000 00 1224566
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC---EEEeCC---C--eEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNS---G--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~---~v~~~~---g--~~i~yd~lvlATG~~~~ 175 (489)
+.+.++.|+++++|...++... .+.+.+ + +++++|.|++++|-+|.
T Consensus 262 L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~ 315 (506)
T KOG1335|consen 262 LQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPF 315 (506)
T ss_pred HHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCccc
Confidence 7889999999999999987654 333332 2 46899999999998775
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0029 Score=62.05 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=31.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.+|||||||.+|+++|..|.+.|+ +|+|+|+...
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~---~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGI---DVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCC---eEEEEeeccc
Confidence 5689999999999999999999998 7999998654
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.027 Score=59.99 Aligned_cols=34 Identities=35% Similarity=0.397 Sum_probs=30.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.-.|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~ 44 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSA 44 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 3469999999999999999999999999998764
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.0032 Score=66.65 Aligned_cols=60 Identities=25% Similarity=0.332 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~aD-~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.|+++++ ++.++++..+ +++|.+|... +|+ ++.++ .||+|+|.-.+
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~-~~~v~~Li~~-~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWT-NTPLTELIVE-DGRVVGVVVVRDGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEe-CCEEEEEEEe-CCEEEEEEEEECCeEEEEEecceEEEecCCccC
Confidence 456777778888899999999 9999999854 6788887663 343 47784 68888886543
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.032 Score=59.97 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 9 ~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~ 40 (626)
T PRK07803 9 YDVVVIGAGGAGLRAAIEARERGLRVAVVCKS 40 (626)
T ss_pred ecEEEECcCHHHHHHHHHHHHCCCCEEEEecc
Confidence 46999999999999999999999999998764
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0038 Score=66.31 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=47.3
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEEEEccCCCCCCchhhhcCCee
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
++....++.++++++ ++.|++|..+ ++++++|+..+. ..+.++.||+|.|..-...+|..+|+-.
T Consensus 206 ~l~~a~~~~nl~i~~-~a~V~rI~~~-~~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 206 YLDPALKRPNLTIVT-HALTDRILFE-GKRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred hhccccCCCCcEEEc-CCEEEEEEEe-CCeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 344444567799999 9999999865 567778877442 1468999999999766556777777643
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.003 Score=69.42 Aligned_cols=35 Identities=23% Similarity=0.269 Sum_probs=30.5
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+|+|||||+||++||..|++.+. ..+|+|+|+.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~-G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDP-AHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCC-CCeEEEEecCCC
Confidence 79999999999999999999832 348999999875
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.032 Score=59.47 Aligned_cols=51 Identities=16% Similarity=0.247 Sum_probs=36.5
Q ss_pred HHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 255 YEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+.+.+++ .||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|..
T Consensus 143 L~~~~~~~~gv~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~ 199 (577)
T PRK06069 143 LYSRALRFDNIHFYD-EHFVTSLIVE-NGVFKGVTAIDLKRGEFKVFQAKAGIIATGGA 199 (577)
T ss_pred HHHHHHhcCCCEEEE-CCEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCcEEEcCchh
Confidence 3444444 5899998 9999998743 566666553 3564 58999999999975
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.031 Score=59.64 Aligned_cols=32 Identities=28% Similarity=0.390 Sum_probs=28.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~ 35 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDLFSLV 35 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEEEEcc
Confidence 36999999999999999999999999998743
|
|
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0055 Score=44.91 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=29.3
Q ss_pred EECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 212 VVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 212 ViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
|||+|..|+-+|..|++.|.+|+++++.+++-.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG 33 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGG 33 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSG
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCc
Confidence 799999999999999999999999999986643
|
... |
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.047 Score=54.96 Aligned_cols=101 Identities=25% Similarity=0.375 Sum_probs=63.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC---cEEEEccCCcc------------------------------------hhh---
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL---DTTIIFPENHL------------------------------------LQR--- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~---~V~lv~~~~~~------------------------------------l~~--- 245 (489)
.+|+|||+|++|+.+|..|.+.-. .++++++.+++ |..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHHhccc
Confidence 479999999999999999976532 27888766322 100
Q ss_pred -------------------hhCHHHHHHHHHHHHhcC---cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 246 -------------------LFTPSLAQRYEQLYQQNG---VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 246 -------------------~~~~~~~~~l~~~l~~~G---v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
.|+.-+.+.+...+++.- +.++. +..+.+...+++....+...+|....||.+|++
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~--~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vla 159 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIR--EEATSVRQDTNAGGYLVTTADGPSEIADIIVLA 159 (474)
T ss_pred ccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEe--eeeecceeccCCceEEEecCCCCeeeeeEEEEe
Confidence 011112222222222222 44443 555566554445556678889999999999999
Q ss_pred cCCCCCC
Q 011267 304 IGAKPTV 310 (489)
Q Consensus 304 ~G~~p~~ 310 (489)
||..+..
T Consensus 160 tgh~~~~ 166 (474)
T COG4529 160 TGHSAPP 166 (474)
T ss_pred ccCCCCC
Confidence 9987653
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.02 Score=60.46 Aligned_cols=56 Identities=16% Similarity=0.280 Sum_probs=38.6
Q ss_pred HHHHHHHHHHh-cCcEEEEcCceEEEEEeCC-CCcEEEEEeC-CCc--EEEcCEEEEccCCC
Q 011267 251 LAQRYEQLYQQ-NGVKFVKVGASIKNLEAGS-DGRVAAVKLE-DGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 251 ~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~~-~g~--~i~aD~vi~a~G~~ 307 (489)
+...+.+.+++ .||+++. ++.++++..++ ++++.++... +|+ .+.++.||+|||--
T Consensus 136 i~~~L~~~~~~~~gi~i~~-~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG~ 196 (553)
T PRK07395 136 IVTTLTEQVLQRPNIEIIS-QALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGGG 196 (553)
T ss_pred HHHHHHHHHhhcCCcEEEE-CcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCCC
Confidence 33444454544 4899998 99999987543 3677777553 454 37899999999973
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.042 Score=55.72 Aligned_cols=86 Identities=13% Similarity=0.174 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhCCCcE------EEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEE
Q 011267 218 IGMEVAAAAVGWKLDT------TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVK 288 (489)
Q Consensus 218 ~g~e~A~~l~~~g~~V------~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~ 288 (489)
+++|+-..|.+.-..+ .-+.+.. + .--+.+..-+.+.|+++||+|.+ |++|+++.-+.+ ..+..+.
T Consensus 174 Sa~E~rRyl~Rf~h~~~~l~~l~~l~~T~-Y---NQyeSii~Pl~~~L~~~GV~F~~-~t~V~di~~~~~~~~~~~~~i~ 248 (500)
T PF06100_consen 174 SAVEFRRYLHRFIHEIPGLNDLSGLDRTK-Y---NQYESIILPLIRYLKSQGVDFRF-NTKVTDIDFDITGDKKTATRIH 248 (500)
T ss_pred hHHHHHHHHHHHHHhcCCCCCccccccCc-c---ccHHHHHHHHHHHHHHCCCEEEC-CCEEEEEEEEccCCCeeEEEEE
Confidence 5677777777653322 1222221 1 12346777899999999999999 999999975322 2233444
Q ss_pred e-CCCc--EE---EcCEEEEccCCCC
Q 011267 289 L-EDGS--TI---DADTIVIGIGAKP 308 (489)
Q Consensus 289 ~-~~g~--~i---~aD~vi~a~G~~p 308 (489)
+ .+|+ +| +-|+|++..|..-
T Consensus 249 ~~~~g~~~~i~l~~~DlV~vT~GS~t 274 (500)
T PF06100_consen 249 IEQDGKEETIDLGPDDLVFVTNGSMT 274 (500)
T ss_pred EEcCCCeeEEEeCCCCEEEEECCccc
Confidence 4 3442 23 3588999888643
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0048 Score=64.76 Aligned_cols=38 Identities=29% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...++||||||||.||+.||.++++.|. +|.|+|+-+.
T Consensus 3 ~~~~~DvvVIG~G~AGl~AAi~aa~~g~---~V~l~~K~~~ 40 (562)
T COG1053 3 TIHEFDVVVIGGGGAGLRAAIEAAEAGL---KVALLSKAPP 40 (562)
T ss_pred ccccCCEEEECCcHHHHHHHHHHHhcCC---cEEEEEcccc
Confidence 3467899999999999999999999986 7999998653
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.028 Score=58.85 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC--Cc--EEEcCEEEEccCCCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED--GS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~--g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.++ .||+++. ++.++++.. +++++.++...+ |+ .+.++.||+|+|...
T Consensus 135 ~L~~~~~-~gV~i~~-~~~v~~Li~-~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~~ 190 (510)
T PRK08071 135 HLLQELV-PHVTVVE-QEMVIDLII-ENGRCIGVLTKDSEGKLKRYYADYVVLASGGCG 190 (510)
T ss_pred HHHHHHh-cCCEEEE-CeEhhheee-cCCEEEEEEEEECCCcEEEEEcCeEEEecCCCc
Confidence 3334333 5888888 888888864 356777766543 33 688999999999754
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.011 Score=64.95 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENH 241 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~ 241 (489)
+|+|||||+.|+-+|..|++. |.+|+++++.+.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 689999999999999999998 899999998753
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.037 Score=58.88 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=27.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..|+|||+|..|+-+|..+++.| +|.++++.
T Consensus 30 ~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~ 60 (594)
T PLN02815 30 FDFLVIGSGIAGLRYALEVAEYG-TVAIITKD 60 (594)
T ss_pred cCEEEECccHHHHHHHHHHhhCC-CEEEEECC
Confidence 47999999999999999999999 88888765
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.054 Score=58.46 Aligned_cols=50 Identities=16% Similarity=0.119 Sum_probs=37.7
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 306 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~ 306 (489)
+.+.+++.||+++. ++.++++.. +++++.++.. .+|+ .+.|+.||+|||-
T Consensus 164 L~~~~~~~gv~i~~-~~~~~~Li~-~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 164 VDNEAIKLGVPVHD-RKEAIALIH-DGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHhCCCEEEe-eEEEEEEEE-ECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 33455678999999 999999985 3577777665 3564 4689999999994
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.0076 Score=65.69 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++|+.||+.|++.|+ +|+|+|+.+...
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~---~V~VlE~~~riG 220 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGF---KVTVLEGRKRPG 220 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC---cEEEEEccCcCC
Confidence 356899999999999999999999987 699999987754
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.042 Score=57.65 Aligned_cols=56 Identities=21% Similarity=0.362 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCC-Cc--EEEcCEEEEccCCCC
Q 011267 251 LAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLED-GS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 251 ~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~-g~--~i~aD~vi~a~G~~p 308 (489)
+.+.+.+.+++. ||+++. ++.++++..+ ++++.++...+ ++ .+.++.||+|+|--.
T Consensus 138 l~~~L~~~~~~~~gV~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG~~ 197 (513)
T PRK07512 138 IMRALIAAVRATPSITVLE-GAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATGGIG 197 (513)
T ss_pred HHHHHHHHHHhCCCCEEEE-CcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCCCCc
Confidence 344455555554 899999 9889998643 56777776543 32 589999999999743
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.072 Score=56.70 Aligned_cols=52 Identities=25% Similarity=0.283 Sum_probs=36.7
Q ss_pred HHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 254 RYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 254 ~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
.+.+.+.+ .||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|..
T Consensus 137 ~L~~~~~~~~~i~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (580)
T TIGR01176 137 TLFQTSLTYPQIMRYD-EWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATGGA 194 (580)
T ss_pred HHHHHHHhcCCCEEEe-CeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCCCC
Confidence 33444434 4789888 8999998754 577776653 4563 68899999999953
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.027 Score=58.13 Aligned_cols=82 Identities=22% Similarity=0.266 Sum_probs=59.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|+|+|.+|+.+|..|.+.|.+|+++++... +.+. ...+.+.+.|++++. +....+
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~-------~~~~-~~~~~l~~~~~~~~~-~~~~~~---------- 64 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEE-------DQLK-EALEELGELGIELVL-GEYPEE---------- 64 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch-------HHHH-HHHHHHHhcCCEEEe-CCcchh----------
Confidence 468999999999999999999999999999987641 1222 222346677888776 432210
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
..-.+|.||.++|..|+.+.+
T Consensus 65 -------~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 65 -------FLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred -------HhhcCCEEEECCCCCCCCHHH
Confidence 012479999999998887654
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.01 Score=56.42 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+...||+|||+|.|||.||.+|++.|. +|+|+|.|+..
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~aG~---~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADAGK---RVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhcCc---eEEEEcccccc
Confidence 456899999999999999999999987 79999998764
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.0077 Score=62.89 Aligned_cols=60 Identities=17% Similarity=0.246 Sum_probs=44.5
Q ss_pred HHhcCcEEEEcCceEEEEEeCCC--CcEEEEEeC---CCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 259 YQQNGVKFVKVGASIKNLEAGSD--GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 259 l~~~Gv~~~~~~~~v~~i~~~~~--~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
++..+++++. ++.|.+|..+++ +++++|... +|+ ++.|+.||+|.|..-+..+|..++..
T Consensus 224 ~~~~n~~l~~-~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 224 APSERFTLLT-NHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred ccCCCEEEEc-CCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 3455699999 999999986644 357666443 343 58999999999988776777666554
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.1 Score=55.68 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=34.1
Q ss_pred HhcCcEEEEcCceEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 260 QQNGVKFVKVGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
++.+++++. ++.++++..+++ +++.+|.. .+|+ .+.++.||+|||...
T Consensus 137 ~~~~~~i~~-~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~~ 191 (614)
T TIGR02061 137 KNALGDIFE-RIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGAV 191 (614)
T ss_pred HhCCCeEEc-ccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCccc
Confidence 334567777 888888875432 67878764 3554 578999999999753
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.075 Score=56.68 Aligned_cols=49 Identities=18% Similarity=0.290 Sum_probs=35.1
Q ss_pred HHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 011267 256 EQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGA 306 (489)
Q Consensus 256 ~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~ 306 (489)
.+.+.+ .||+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|+|.
T Consensus 140 ~~~~~~~~~i~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 140 FQTSLKYPQIQRFD-EHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHhhcCCCcEEEe-CeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 333334 3789988 9999998753 567766543 4663 6899999999994
|
|
| >PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.00023 Score=57.43 Aligned_cols=42 Identities=14% Similarity=-0.031 Sum_probs=28.8
Q ss_pred cccccceeeeeecceecC--CCCCceeee-ccccccccccccccc
Q 011267 2 ASVSNSLSFKHGLSLWCP--QSPSLHRIR-HSSAKNFQRRGFVVA 43 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 43 (489)
.+.+||||+.+||+|+.+ |+..|.+.. .++.+..+.|+..+.
T Consensus 61 i~~~np~p~vcGrvCp~p~~Ce~~C~r~~~~pV~I~~l~r~~~d~ 105 (111)
T PF14691_consen 61 IREDNPFPAVCGRVCPHPKQCESACRRGKGEPVAIRALERFIADY 105 (111)
T ss_dssp HHHH-TTHHHHHHH--GGGSGGGG-GGGST-S--HHHHHHHHHHH
T ss_pred HHHhCCCcccccCCCCCcchHHHHccCCCCCCCcHHHHHHHHHHH
Confidence 457899999999999998 999999976 666677777776554
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0079 Score=64.22 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=28.7
Q ss_pred EEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 54 vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
|||||+|.||++||.++++.|. +|+|||+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~---~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGY---HVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCC---CEEEEEecC
Confidence 6999999999999999999876 799999976
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.013 Score=56.86 Aligned_cols=38 Identities=21% Similarity=0.427 Sum_probs=33.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.....||+|||||.+|-+.|+.|.+.|. +|.+||++-.
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kdGR---rVhVIERDl~ 79 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKDGR---RVHVIERDLS 79 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhCCc---EEEEEecccc
Confidence 3456899999999999999999999986 7999999743
|
|
| >KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.015 Score=56.86 Aligned_cols=104 Identities=20% Similarity=0.211 Sum_probs=67.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..+..|-|||+|+-|-..|..|.+.-. ...+|.-+=.+. |+.......|+. ....
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek---~nm~kiLPeyls---------------------~wt~ 400 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEK---YNMEKILPEYLS---------------------QWTI 400 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeeccc---CChhhhhHHHHH---------------------HHHH
Confidence 456889999999999999999976521 122332221221 111100000110 1122
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+-.++.|+.++.+..|.++.... -.+.+.||.++..|.+|+|+|..|+.
T Consensus 401 ekir~~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346|consen 401 EKIRKGGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred HHHHhcCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCch
Confidence 33567799999998888876544 46778999999999999999998863
|
|
| >KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.05 Score=53.58 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..+|+|||||..|+-.|..|.++|.+|.+++.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~ 34 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESR 34 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeec
Confidence 357999999999999999999999999999876
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.13 Score=54.31 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=38.1
Q ss_pred HHHHHHHhc-CcEEEEcCceEEEEEeCC-----CCcEEEEEeC---CCc--EEEcCEEEEccCCCC
Q 011267 254 RYEQLYQQN-GVKFVKVGASIKNLEAGS-----DGRVAAVKLE---DGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 254 ~l~~~l~~~-Gv~~~~~~~~v~~i~~~~-----~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.+++. ||+++. ++.++++..++ ++++.+|... +|+ .+.++.||+|+|.-.
T Consensus 143 ~L~~~~~~~~~I~v~~-~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~~ 207 (536)
T PRK09077 143 TLVERARNHPNITVLE-RHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGAS 207 (536)
T ss_pred HHHHHHHhCCCcEEEe-eEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCCC
Confidence 344444443 899999 99988887433 3678777753 354 589999999999754
|
|
| >KOG2755 consensus Oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.021 Score=52.58 Aligned_cols=91 Identities=20% Similarity=0.343 Sum_probs=57.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE----------E--EEcCceEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK----------F--VKVGASIK 274 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~----------~--~~~~~~v~ 274 (489)
+.+|||||..|+.+|..|+.+- .++.++..++-+-+ . .--..+.+++++..|+ + .. +. |.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vks-v---tn~~~i~~ylekfdv~eq~~~elg~~f~~~~-~~-v~ 74 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKS-V---TNYQKIGQYLEKFDVKEQNCHELGPDFRRFL-ND-VV 74 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHH-H---hhHHHHHHHHHhcCccccchhhhcccHHHHH-Hh-hh
Confidence 3689999999999999998763 46777766542211 1 1112333444444433 1 00 11 33
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.. +-..+++++|.++.++.+++|+|.+|.
T Consensus 75 ~~~s----~ehci~t~~g~~~ky~kKOG~tg~kPk 105 (334)
T KOG2755|consen 75 TWDS----SEHCIHTQNGEKLKYFKLCLCTGYKPK 105 (334)
T ss_pred hhcc----ccceEEecCCceeeEEEEEEecCCCcc
Confidence 3321 123688999999999999999999996
|
|
| >KOG2852 consensus Possible oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.038 Score=51.63 Aligned_cols=34 Identities=41% Similarity=0.564 Sum_probs=28.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC------CcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g------~~V~lv~~~ 239 (489)
..++++|+|||.+|+-.|+.|.+.. ..+++++..
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 3488999999999999999999886 578888755
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.018 Score=65.54 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++|+++|+.|.+.|+ +|+|+|+.+...
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~---~V~VlEa~~~vG 729 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGF---SVTVLEARSRIG 729 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCC---cEEEEeeccCCC
Confidence 346899999999999999999999987 699999986653
|
|
| >KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.0034 Score=55.59 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=32.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..||||||+|.|||+||+.+.++.. +.+|.+||..-.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rP-dlkvaIIE~SVa 112 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRP-DLKVAIIESSVA 112 (328)
T ss_pred ccceEEECCCccccceeeeeeccCC-CceEEEEEeeec
Confidence 4599999999999999999997764 889999998644
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.18 Score=53.38 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=29.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.+
T Consensus 5 ~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 5 ADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 469999999999999999999999999988654
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.019 Score=57.65 Aligned_cols=35 Identities=23% Similarity=0.173 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
++|+|||||+.|+++|..|++.|.+|+++++.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc
Confidence 57999999999999999999999999999976544
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.07 Score=53.84 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=27.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.|+|||+|..|+-+|..|.+. .+|+++.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~ 38 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKG 38 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCC
Confidence 699999999999999999987 788888776
|
|
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.16 Score=53.32 Aligned_cols=53 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeC-CCc--EEEcC-EEEEccCCCC-CCchhhhc
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLE-DGS--TIDAD-TIVIGIGAKP-TVSPFERV 316 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g~--~i~aD-~vi~a~G~~p-~~~~~~~~ 316 (489)
.|+++++ ++.++++..+ +++|.+|... +|+ ++.++ .||+|+|--. |.+++++.
T Consensus 187 ~gv~i~~-~t~~~~Li~~-~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~~~n~~m~~~~ 244 (513)
T PRK12837 187 PNARLRL-NTPLVELVVE-DGRVVGAVVERGGERRRVRARRGVLLAAGGFEQNDDMRARY 244 (513)
T ss_pred CCCEEEe-CCEEEEEEec-CCEEEEEEEEECCcEEEEEeCceEEEeCCCccCCHHHHHHh
Confidence 4899999 9999998754 6778777653 343 57886 6888887654 43444443
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.23 Score=52.71 Aligned_cols=33 Identities=39% Similarity=0.378 Sum_probs=30.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
...|+|||+|..|+-+|..+++.|.+|.++++.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~ 38 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ 38 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 346999999999999999999999999999876
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.016 Score=61.09 Aligned_cols=65 Identities=12% Similarity=0.245 Sum_probs=47.3
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-c---EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-S---TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~---~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.++....++.|++++. ++.|++|..+ ++++++|++.++ + .+.++.||+|.|..-...+|..+|+-
T Consensus 198 ~~l~~a~~r~nl~i~~-~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~SGIG 266 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQT-RAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLSGIG 266 (532)
T ss_pred HHhhhhccCCCeEEEe-CCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhcCCC
Confidence 3444545567899999 9999999864 567888877543 2 35899999999975544667666663
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PF02852 Pyr_redox_dim: Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain; InterPro: IPR004099 This entry represents a dimerisation domain that is usually found at the C-terminal of both class I and class II oxidoreductases, as well as in NADH oxidases and peroxidases [, , ] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.043 Score=44.47 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=42.8
Q ss_pred EEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCCh--hhhcCCCcHHHHHHHHH
Q 011267 425 IATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVDK--AKLQQASSVEEALEIAR 480 (489)
Q Consensus 425 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~e~~~~~~ 480 (489)
+.++.++ +++|+|+++++.++.++... ..++.++.+++. ..+..+||+.|+++.|+
T Consensus 50 ~~Kli~d~~t~~IlGa~~vg~~a~e~I~~~~~ai~~~~t~~~l~~~~~~~Pt~se~~~~a~ 110 (110)
T PF02852_consen 50 FVKLIFDKKTGRILGAQIVGPNASELINELALAIQNGLTVEDLADDIFYHPTFSEAIQEAA 110 (110)
T ss_dssp EEEEEEETTTTBEEEEEEEETTHHHHHHHHHHHHHTTSBHHHHHTSBSSSTSTGHHHHHHH
T ss_pred eeEEEEEeeccceeeeeeecCchHHHHHHHHHHHHcCCCHHHHhCCeeeCCChhHHHHHhC
Confidence 5565554 59999999888788876655 456788888872 33588999999999886
|
; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0045454 cell redox homeostasis, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3II4_B 2A8X_A 2BC0_B 2BC1_B 2W0H_A 2X50_B 2JK6_A 2YAU_A 2EQ9_E 2EQ6_B .... |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 489 | ||||
| 3fg2_P | 404 | Crystal Structure Of Ferredoxin Reductase For The C | 6e-34 | ||
| 3lb8_A | 436 | Crystal Structure Of The Covalent Putidaredoxin Red | 7e-33 | ||
| 1q1r_A | 431 | Crystal Structure Of Putidaredoxin Reductase From P | 8e-33 | ||
| 3lxd_A | 415 | Crystal Structure Of Ferredoxin Reductase Arr From | 1e-32 | ||
| 3ef6_A | 410 | Crystal Structure Of Toluene 2,3-Dioxygenase Reduct | 2e-24 | ||
| 1d7y_A | 408 | Crystal Structure Of Nadh-Dependent Ferredoxin Redu | 3e-22 | ||
| 2gr3_A | 408 | Crystal Structure Of Ferredoxin Reductase, Bpha4 (O | 4e-22 | ||
| 4fdc_B | 514 | Crystal Structure Of The E493v Mutant Of Human Apop | 1e-16 | ||
| 3iwa_A | 472 | Crystal Structure Of A Fad-Dependent Pyridine Nucle | 1e-16 | ||
| 1gv4_A | 528 | Murine Apoptosis-Inducing Factor (Aif) Length = 528 | 1e-16 | ||
| 3gd3_A | 535 | Crystal Structure Of A Naturally Folded Murine Apop | 1e-16 | ||
| 3gd4_A | 511 | Crystal Structure Of The Reduced, Nad-Bound Form Of | 1e-16 | ||
| 1m6i_A | 493 | Crystal Structure Of Apoptosis Inducing Factor (Aif | 3e-16 | ||
| 1xhc_A | 367 | Nadh Oxidase /nitrite Reductase From Pyrococcus Fur | 5e-11 | ||
| 3cgc_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 2e-10 | ||
| 2cdu_A | 452 | The Crystal Structure Of Water-Forming Nad(P)h Oxid | 4e-10 | ||
| 2eq7_A | 455 | Crystal Structure Of Lipoamide Dehydrogenase From T | 4e-09 | ||
| 1ebd_A | 455 | Dihydrolipoamide Dehydrogenase Complexed With The B | 6e-09 | ||
| 3cgb_A | 480 | Pyridine Nucleotide Complexes With Bacillus Anthrac | 2e-08 | ||
| 3ean_A | 499 | Crystal Structure Of Recombinant Rat Selenoprotein | 4e-08 | ||
| 1h6v_A | 499 | Mammalian Thioredoxin Reductase Length = 499 | 4e-08 | ||
| 3ntd_A | 565 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 7e-08 | ||
| 2zz0_A | 513 | Crystal Structure Of Human Thioredoxin Reductase I | 1e-07 | ||
| 2j3n_A | 519 | X-Ray Structure Of Human Thioredoxin Reductase 1 Le | 2e-07 | ||
| 2cfy_A | 521 | Crystal Structure Of Human Thioredoxin Reductase 1 | 2e-07 | ||
| 3qfa_A | 519 | Crystal Structure Of The Human Thioredoxin Reductas | 2e-07 | ||
| 1zy8_A | 474 | The Crystal Structure Of Dihydrolipoamide Dehydroge | 6e-07 | ||
| 1zmc_A | 474 | Crystal Structure Of Human Dihydrolipoamide Dehydro | 7e-07 | ||
| 1nhr_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 7e-07 | ||
| 1nhs_A | 447 | An L40c Mutation Converts The Cysteine-Sulfenic Aci | 7e-07 | ||
| 3rnm_A | 495 | The Crystal Structure Of The Subunit Binding Of Hum | 7e-07 | ||
| 1nhq_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 7e-07 | ||
| 4gcm_A | 312 | Crystal Structure Of A Thioredoxine Reductase (Trxb | 7e-07 | ||
| 1nhp_A | 447 | Crystallographic Analyses Of Nadh Peroxidase Cys42a | 7e-07 | ||
| 1joa_A | 447 | Nadh Peroxidase With Cysteine-Sulfenic Acid Length | 8e-07 | ||
| 2v3a_A | 384 | Crystal Structure Of Rubredoxin Reductase From Pseu | 1e-06 | ||
| 2wba_A | 492 | Properties Of Trypanothione Reductase From T. Bruce | 1e-06 | ||
| 2woi_A | 495 | Trypanothione Reductase From Trypanosoma Brucei Len | 1e-06 | ||
| 4dna_A | 463 | Crystal Structure Of Putative Glutathione Reductase | 2e-06 | ||
| 2hqm_A | 479 | Crystal Structure Of Glutathione Reductase Glr1 Fro | 2e-06 | ||
| 3nta_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 2e-06 | ||
| 3nt6_A | 574 | Structure Of The Shewanella Loihica Pv-4 Nadh-Depen | 2e-06 | ||
| 2bc0_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 3e-06 | ||
| 2bc1_A | 490 | Structural Analysis Of Streptococcus Pyogenes Nadh | 3e-06 | ||
| 3klj_A | 385 | Crystal Structure Of Nadh:rubredoxin Oxidoreductase | 4e-06 | ||
| 1f8w_A | 447 | Crystal Structure Of Nadh Peroxidase Mutant: R303m | 5e-06 | ||
| 1dxl_A | 470 | Dihydrolipoamide Dehydrogenase Of Glycine Decarboxy | 2e-05 | ||
| 1ger_A | 450 | The Structure Of Glutathione Reductase From Escheri | 2e-05 | ||
| 1nda_A | 491 | The Structure Of Trypanosoma Cruzi Trypanothione Re | 2e-05 | ||
| 1aog_A | 485 | Trypanosoma Cruzi Trypanothione Reductase (Oxidized | 2e-05 | ||
| 1bzl_A | 486 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-05 | ||
| 1gxf_A | 492 | Crystal Structure Of Trypanosoma Cruzi Trypanothion | 2e-05 | ||
| 4eqw_A | 437 | Crystal Structure Of The Y361f, Y419f Mutant Of Sta | 3e-05 | ||
| 4eqs_A | 437 | Crystal Structure Of The Y419f Mutant Of Staphyloco | 3e-05 | ||
| 4eqr_A | 437 | Crystal Structure Of The Y361f Mutant Of Staphyloco | 3e-05 | ||
| 4emw_A | 436 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 4e-05 | ||
| 1yqz_A | 438 | Structure Of Coenzyme A-Disulfide Reductase From St | 4e-05 | ||
| 4em3_A | 437 | Crystal Structure Of Staphylococcus Aureus Bound Wi | 4e-05 | ||
| 4eqx_A | 437 | Crystal Structure Of The C43s Mutant Of Staphylococ | 4e-05 | ||
| 3l8k_A | 466 | Crystal Structure Of A Dihydrolipoyl Dehydrogenase | 4e-05 | ||
| 3ab1_A | 360 | Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas | 4e-05 | ||
| 3dgz_A | 488 | Crystal Structure Of Mouse Mitochondrial Thioredoxi | 5e-05 | ||
| 1zdl_A | 517 | Crystal Structure Of Mouse Thioredoxin Reductase Ty | 7e-05 | ||
| 3icr_A | 588 | Crystal Structure Of Oxidized Bacillus Anthracis Co | 1e-04 | ||
| 3urh_A | 491 | Crystal Structure Of A Dihydrolipoamide Dehydrogena | 2e-04 | ||
| 3oc4_A | 452 | Crystal Structure Of A Pyridine Nucleotide-Disulfid | 7e-04 | ||
| 1lvl_A | 458 | The Refined Structure Of Pseudomonas Putida Lipoami | 8e-04 | ||
| 1ges_A | 450 | Anatomy Of An Engineered Nad-Binding Site Length = | 8e-04 |
| >pdb|3FG2|P Chain P, Crystal Structure Of Ferredoxin Reductase For The Cyp199a2 System From Rhodopseudomonas Palustris Length = 404 | Back alignment and structure |
|
| >pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase- Putidaredoxin Complex Length = 436 | Back alignment and structure |
|
| >pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From Pseudomonas Putida Length = 431 | Back alignment and structure |
|
| >pdb|3LXD|A Chain A, Crystal Structure Of Ferredoxin Reductase Arr From Novosphingobium Aromaticivorans Length = 415 | Back alignment and structure |
|
| >pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase Length = 410 | Back alignment and structure |
|
| >pdb|1D7Y|A Chain A, Crystal Structure Of Nadh-Dependent Ferredoxin Reductase, Bpha4 Length = 408 | Back alignment and structure |
|
| >pdb|2GR3|A Chain A, Crystal Structure Of Ferredoxin Reductase, Bpha4 (Oxidized Form) Length = 408 | Back alignment and structure |
|
| >pdb|4FDC|B Chain B, Crystal Structure Of The E493v Mutant Of Human Apoptosis Inducing Factor (Aif) Length = 514 | Back alignment and structure |
|
| >pdb|3IWA|A Chain A, Crystal Structure Of A Fad-Dependent Pyridine Nucleotide-Disulphide Oxidoreductase From Desulfovibrio Vulgaris Length = 472 | Back alignment and structure |
|
| >pdb|1GV4|A Chain A, Murine Apoptosis-Inducing Factor (Aif) Length = 528 | Back alignment and structure |
|
| >pdb|3GD3|A Chain A, Crystal Structure Of A Naturally Folded Murine Apoptosis Inducing Factor Length = 535 | Back alignment and structure |
|
| >pdb|3GD4|A Chain A, Crystal Structure Of The Reduced, Nad-Bound Form Of Murine Apoptosis Inducing Factor Length = 511 | Back alignment and structure |
|
| >pdb|1M6I|A Chain A, Crystal Structure Of Apoptosis Inducing Factor (Aif) Length = 493 | Back alignment and structure |
|
| >pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus Pfu-1140779- 001 Length = 367 | Back alignment and structure |
|
| >pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(p)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|2CDU|A Chain A, The Crystal Structure Of Water-Forming Nad(P)h Oxidase From Lactobacillus Sanfranciscensis Length = 452 | Back alignment and structure |
|
| >pdb|2EQ7|A Chain A, Crystal Structure Of Lipoamide Dehydrogenase From Thermus Thermophilus Hb8 With Psbdo Length = 455 | Back alignment and structure |
|
| >pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding Domain Of The Dihydrolipoamide Acetylase Length = 455 | Back alignment and structure |
|
| >pdb|3CGB|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis Coenzyme A- Disulfide Reductase: A Structural Analysis Of Dual Nad(P)h Specificity Length = 480 | Back alignment and structure |
|
| >pdb|3EAN|A Chain A, Crystal Structure Of Recombinant Rat Selenoprotein Thioredoxin Reductase 1 With Reduced C-Terminal Tail Length = 499 | Back alignment and structure |
|
| >pdb|1H6V|A Chain A, Mammalian Thioredoxin Reductase Length = 499 | Back alignment and structure |
|
| >pdb|3NTD|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C531s Mutant Length = 565 | Back alignment and structure |
|
| >pdb|2ZZ0|A Chain A, Crystal Structure Of Human Thioredoxin Reductase I (Secys 498 Cys) Length = 513 | Back alignment and structure |
|
| >pdb|2J3N|A Chain A, X-Ray Structure Of Human Thioredoxin Reductase 1 Length = 519 | Back alignment and structure |
|
| >pdb|2CFY|A Chain A, Crystal Structure Of Human Thioredoxin Reductase 1 Length = 521 | Back alignment and structure |
|
| >pdb|3QFA|A Chain A, Crystal Structure Of The Human Thioredoxin Reductase-Thioredoxin Complex Length = 519 | Back alignment and structure |
|
| >pdb|1ZY8|A Chain A, The Crystal Structure Of Dihydrolipoamide Dehydrogenase And Dihydrolipoamide Dehydrogenase-Binding Protein (Didomain) Subcomplex Of Human Pyruvate Dehydrogenase Complex. Length = 474 | Back alignment and structure |
|
| >pdb|1ZMC|A Chain A, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase Complexed To Nad+ Length = 474 | Back alignment and structure |
|
| >pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447 | Back alignment and structure |
|
| >pdb|3RNM|A Chain A, The Crystal Structure Of The Subunit Binding Of Human Dihydrolipoamide Transacylase (E2b) Bound To Human Dihydrolipoamide Dehydrogenase (E3) Length = 495 | Back alignment and structure |
|
| >pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312 | Back alignment and structure |
|
| >pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447 | Back alignment and structure |
|
| >pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447 | Back alignment and structure |
|
| >pdb|2V3A|A Chain A, Crystal Structure Of Rubredoxin Reductase From Pseudomonas Aeruginosa. Length = 384 | Back alignment and structure |
|
| >pdb|2WBA|A Chain A, Properties Of Trypanothione Reductase From T. Brucei Length = 492 | Back alignment and structure |
|
| >pdb|2WOI|A Chain A, Trypanothione Reductase From Trypanosoma Brucei Length = 495 | Back alignment and structure |
|
| >pdb|4DNA|A Chain A, Crystal Structure Of Putative Glutathione Reductase From Sinorhizobium Meliloti 1021 Length = 463 | Back alignment and structure |
|
| >pdb|2HQM|A Chain A, Crystal Structure Of Glutathione Reductase Glr1 From The Yeast Saccharomyces Cerevisiae Length = 479 | Back alignment and structure |
|
| >pdb|3NTA|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase Length = 574 | Back alignment and structure |
|
| >pdb|3NT6|A Chain A, Structure Of The Shewanella Loihica Pv-4 Nadh-Dependent Persulfide Reductase C43sC531S DOUBLE MUTANT Length = 574 | Back alignment and structure |
|
| >pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490 | Back alignment and structure |
|
| >pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490 | Back alignment and structure |
|
| >pdb|3KLJ|A Chain A, Crystal Structure Of Nadh:rubredoxin Oxidoreductase From Clostridium Acetobutylicum Length = 385 | Back alignment and structure |
|
| >pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447 | Back alignment and structure |
|
| >pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase From Pisum Sativum Length = 470 | Back alignment and structure |
|
| >pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia Coli At 1.86 Angstroms Resolution: Comparison With The Enzyme From Human Erythrocytes Length = 450 | Back alignment and structure |
|
| >pdb|1NDA|A Chain A, The Structure Of Trypanosoma Cruzi Trypanothione Reductase In The Oxidized And Nadph Reduced State Length = 491 | Back alignment and structure |
|
| >pdb|1AOG|A Chain A, Trypanosoma Cruzi Trypanothione Reductase (Oxidized Form) Length = 485 | Back alignment and structure |
|
| >pdb|1BZL|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With Trypanothione, And The Structure- Based Discovery Of New Natural Product Inhibitors Length = 486 | Back alignment and structure |
|
| >pdb|1GXF|A Chain A, Crystal Structure Of Trypanosoma Cruzi Trypanothione Reductase In Complex With The Inhibitor Quinacrine Mustard Length = 492 | Back alignment and structure |
|
| >pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436 | Back alignment and structure |
|
| >pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438 | Back alignment and structure |
|
| >pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437 | Back alignment and structure |
|
| >pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437 | Back alignment and structure |
|
| >pdb|3L8K|A Chain A, Crystal Structure Of A Dihydrolipoyl Dehydrogenase From Sulfolobus Solfataricus Length = 466 | Back alignment and structure |
|
| >pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360 | Back alignment and structure |
|
| >pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin Reductase, C- Terminal 3-Residue Truncation Length = 488 | Back alignment and structure |
|
| >pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2 Length = 517 | Back alignment and structure |
|
| >pdb|3ICR|A Chain A, Crystal Structure Of Oxidized Bacillus Anthracis Coadr-Rhd Length = 588 | Back alignment and structure |
|
| >pdb|3URH|A Chain A, Crystal Structure Of A Dihydrolipoamide Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 491 | Back alignment and structure |
|
| >pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide Family Oxidoreductase From The Enterococcus Faecalis V583 Length = 452 | Back alignment and structure |
|
| >pdb|1LVL|A Chain A, The Refined Structure Of Pseudomonas Putida Lipoamide Dehydrogenase Complexed With Nad+ At 2.45 Angstroms Resolution Length = 458 | Back alignment and structure |
|
| >pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site Length = 450 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 489 | |||
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 1e-106 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 1e-103 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 1e-100 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 2e-99 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 3e-99 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 3e-99 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 2e-65 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 4e-60 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 1e-52 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 5e-47 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 2e-46 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 9e-45 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 4e-44 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 9e-44 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 8e-43 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 1e-42 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 2e-42 | |
| 1yqz_A | 438 | Coenzyme A disulfide reductase; oxidoreductase; HE | 3e-41 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 2e-39 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 4e-25 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 5e-25 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 8e-25 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 2e-24 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 6e-24 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 6e-24 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 5e-23 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 3e-22 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 4e-22 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 5e-05 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 1e-21 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 2e-07 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 7e-21 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 7e-21 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 7e-21 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 8e-21 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 1e-20 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 2e-20 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 4e-20 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 6e-20 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 6e-07 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 8e-20 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 2e-19 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 5e-19 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 4e-18 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 4e-18 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 6e-18 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 5e-17 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 1e-16 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 1e-16 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 1e-16 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 3e-16 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 4e-16 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 9e-16 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 1e-15 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 2e-15 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 2e-15 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 4e-15 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 6e-15 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 8e-15 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 3e-14 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 9e-14 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 5e-13 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 9e-13 | |
| 1fcd_A | 401 | Flavocytochrome C sulfide dehydrogenase (flavin- b | 1e-12 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 8e-12 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 7e-11 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 3e-10 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 4e-10 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 2e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 2e-08 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 2e-07 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 7e-07 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 3e-06 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 5e-06 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 8e-06 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 4e-05 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 3e-04 |
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493 | Back alignment and structure |
|---|
Score = 323 bits (831), Expect = e-106
Identities = 103/437 (23%), Positives = 177/437 (40%), Gaps = 42/437 (9%)
Query: 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPA 109
+ F+++GGG AA AAR+ R+ IVS++ PY RP L+K P
Sbjct: 10 SHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELW--FSDDPN 66
Query: 110 RLPGFHTCVGSGGER----QTPEWY---------KEKGIEMIYQDPVTSIDIEKQTLITN 156
+G ER Q P +Y + G+ ++ V +D+ + N
Sbjct: 67 VTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN 126
Query: 157 SGKLLKYGSLIVATGCTASRFP--EKIGGYLPG-VHYIRDVADADALISSLEKAKKVVVV 213
G + Y ++ATG T ++ G + R + D +L + K + ++
Sbjct: 127 DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITII 186
Query: 214 GGGYIGMEVAAA----AVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKV 269
GGG++G E+A A A + +FPE + ++ L+ + ++ GVK +
Sbjct: 187 GGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM-P 245
Query: 270 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL--NSSVGGIQV 327
A ++++ +KL+DG ++ D IV +G +P V + GL +S GG +V
Sbjct: 246 NAIVQSVGV--SSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRV 303
Query: 328 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 387
+ + + R I+ GD A F R RVEH DHA S + + + A Y +
Sbjct: 304 NAELQAR-SNIWVAGDAACFYDIKLGRR-RVEHHDHAVVSGRLAGENMTGAAKP-YWHQS 360
Query: 388 YFYSRVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIA-----TFWIDSGKLKGVLVES 442
F+S + + V ++ G +G F A + SG E+
Sbjct: 361 MFWSDLG-PD-----VGYEAIGLVDSSLPTVGVFAKATAQDNPKSATEQSGTGIRSESET 414
Query: 443 GSPEEFQLLPTLARSQP 459
S +P + P
Sbjct: 415 ESEASEITIPPSTPAVP 431
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431 | Back alignment and structure |
|---|
Score = 314 bits (806), Expect = e-103
Identities = 123/447 (27%), Positives = 199/447 (44%), Gaps = 31/447 (6%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
N N VIVG G A A G +G + +V P+ P L+K YL K
Sbjct: 2 NANDNVVIVGTGLAGVEVAFGLRASG-WEGNIRLVGDATVIPHHLPPLSKAYL--AGKAT 58
Query: 109 ARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
A T P+ Y + I+++ VT+I+ ++Q +I + G+ L Y L++
Sbjct: 59 AESLYLRT----------PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVL 108
Query: 169 ATGCTASRFPEKIG--GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA 226
ATG P G G Y+R + DA+ + L ++VV+GGGYIG+EVAA A
Sbjct: 109 ATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATA 168
Query: 227 VGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE-AGSDGRVA 285
+ + T++ +L+R+ P ++ YE L+++ GV G + E + +V
Sbjct: 169 IKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIR-TGTQVCGFEMSTDQQKVT 227
Query: 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA 345
AV EDG+ + AD ++ GIG P GL GI ++ +T P I A+GD A
Sbjct: 228 AVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCA 286
Query: 346 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWW 405
F ++YDR R+E V +A + A+ L + P+F+S +E +
Sbjct: 287 RFHSQLYDRWVRIESVPNALEQARKIAAILCGKVP-RDEAAPWFWSDQYE-----IGL-- 338
Query: 406 QFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 462
+ G + G I G+ P + F++ ++ V P EF + + V+
Sbjct: 339 KMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAV-DTVNRPVEFNQSKQIITDRLPVE 397
Query: 463 KAKLQQAS-SVEEALEIARAALPVEAA 488
L S ++E + A+A L A
Sbjct: 398 PNLLGDESVPLKEIIAAAKAELSSAPA 424
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404 | Back alignment and structure |
|---|
Score = 307 bits (788), Expect = e-100
Identities = 112/419 (26%), Positives = 182/419 (43%), Gaps = 30/419 (7%)
Query: 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
N +I G G+A A + + GR+ +++ E + PY+RP L+K YL
Sbjct: 1 NDTVLIAGAGHAGFQVAVSLRQAK-YPGRIALINDEKHLPYQRPPLSKAYL--KSGGDPN 57
Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
F ++++++ IE+I D + SID E + L+ SG ++YG L++AT
Sbjct: 58 SLMFRP----------EKFFQDQAIELI-SDRMVSIDREGRKLLLASGTAIEYGHLVLAT 106
Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
G LP V Y+R + +++ L + K VVV+G G+IG+E AA A
Sbjct: 107 GARNRMLDVP-NASLPDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAATARAKG 165
Query: 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290
L+ ++ ++ R+ TP ++ + + G++ G + RV V L
Sbjct: 166 LEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMH-YGVRATEIA-AEGDRVTGVVLS 223
Query: 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
DG+T+ D +V+G+G P V GL ++ GI VD Q T P I AIGD A F
Sbjct: 224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESV 282
Query: 351 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 410
+ T RVE V +A A+ L YD P+F+S + K+ Q G
Sbjct: 283 RFGETMRVESVQNATDQARCVAARLT-GDAKPYDGYPWFWSDQGD-----DKL--QIVGL 334
Query: 411 NVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 466
G + + G+ + F +GKL G+ + + V +
Sbjct: 335 TAGFDQVVIRGSVAERSFSAFCYKAGKLIGI-ESVNRAADHVFGRKILPLDKSVTPEQA 392
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = 2e-99
Identities = 102/436 (23%), Positives = 174/436 (39%), Gaps = 39/436 (8%)
Query: 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
V++G G A+ + G G + +V EA PY+RP L+K ++
Sbjct: 7 KAPVVVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFM--------- 56
Query: 111 LPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVAT 170
E+ + + +E + S D + T+ + G+ L YG+L++AT
Sbjct: 57 -------AHGDAEKIRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLAT 109
Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK 230
G P + G VH +R + DA + + L ++++VGGG IG+E+AA A
Sbjct: 110 GAAPRALPT-LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAG 168
Query: 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290
+ +++ + L+ R +LA + + GV S+ + V L+
Sbjct: 169 VHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLR-FERSV------TGSVDGVVLLD 221
Query: 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
DG+ I AD +V+GIG + GL GI VD RT P ++A+GDV
Sbjct: 222 DGTRIAADMVVVGIGVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNP 280
Query: 351 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD 410
+ R R+E +A+ + L+ Y LP+++S ++ Q G
Sbjct: 281 LSGRFERIETWSNAQNQGIAVARHLVDPTAPGYAELPWYWSDQGA-----LRI--QVAGL 333
Query: 411 NVG-ETIEIGNFDP---KIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 466
G E I G K + G++ G + +F L L D+A L
Sbjct: 334 ASGDEEIVRGEVSLDAPKFTLIELQKGRIVGA-TCVNNARDFAPLRRLLAVGAKPDRAAL 392
Query: 467 QQAS-SVEEALEIARA 481
+ + + A
Sbjct: 393 ADPATDLRKLAAAVAA 408
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = 3e-99
Identities = 120/427 (28%), Positives = 200/427 (46%), Gaps = 31/427 (7%)
Query: 45 SSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPL 104
S E + VIVG G+ AA ++G +GR+ ++ +E PYERP L+K YL
Sbjct: 3 SEVQAERADVVIVGAGHGGAQAAIALRQNG-FEGRVLVIGREPEIPYERPPLSKEYL--A 59
Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
+K +++++K +EM V S+D T+ G ++YG
Sbjct: 60 REKTFERICIRP----------AQFWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYG 109
Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-AKKVVVVGGGYIGMEVA 223
LI ATG R +G L GVH +R DAD L++ L+ AK VV+GGGYIG+E A
Sbjct: 110 KLIWATGGDPRRLSC-VGADLAGVHAVRTKEDADRLMAELDAGAKNAVVIGGGYIGLEAA 168
Query: 224 AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283
A + ++ T++ +L R+ +L++ Y+ ++ +GV GA++ +E G +
Sbjct: 169 AVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLR-TGAAMDCIE-GDGTK 226
Query: 284 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 343
V V+++DGS I AD +++GIG P V G + G+ VD RT + ++AIGD
Sbjct: 227 VTGVRMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGD 285
Query: 344 VAAFPLKMYD-RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRK 402
AA D R+E V +A A K + A Y P+F+S ++ K
Sbjct: 286 CAAHANDFADGAVIRLESVQNANDMATAAAKDICGAPV-PYKATPWFWSNQYD-----LK 339
Query: 403 VWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQP 459
+ Q G + G + G+ + ++ GK+ + +++ L ++
Sbjct: 340 L--QTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVAL-DCVNMVKDYVQGKKLVEARA 396
Query: 460 FVDKAKL 466
+ +L
Sbjct: 397 QIAPEQL 403
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410 | Back alignment and structure |
|---|
Score = 303 bits (779), Expect = 3e-99
Identities = 109/416 (26%), Positives = 186/416 (44%), Gaps = 32/416 (7%)
Query: 54 FVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPG 113
I+G G A+ G +GR+ ++ E + PY+RP+L+K L ++P L
Sbjct: 5 VAIIGNGVGGFTTAQALRAEG-FEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPIL-- 61
Query: 114 FHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT 173
+WY E I+M+ VT++D++ +T+ + G L ++++ATG
Sbjct: 62 -----------AEADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSR 110
Query: 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDT 233
A G LPGV +R D L S A ++++VGGG IG EVA A L
Sbjct: 111 ARTMALP-GSQLPGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATTARKLGLSV 169
Query: 234 TIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS 293
TI+ + LL R+ + L + GV+ +G + +G++ V DG
Sbjct: 170 TILEAGDELLVRVLGRRIGAWLRGLLTELGVQVE-LGTGVVGFSG--EGQLEQVMASDGR 226
Query: 294 TIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353
+ AD+ +I +GA+P + GL G+ VD T G+FA+GDVA++PL+
Sbjct: 227 SFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRAGG 285
Query: 354 RTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG 413
R +E +A++ A A+L LP ++ + ++ Q GD G
Sbjct: 286 RR-SLETYMNAQRQAAAVAAAILGKNVS-APQLPVSWTEIAG-----HRM--QMAGDIEG 336
Query: 414 --ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVDKAKL 466
+ + G F + +++ V V +P +F L L ++ ++ A+L
Sbjct: 337 PGDFVSRGMPGSGAALLFRLQERRIQAV-VAVDAPRDFALATRLVEARAAIEPARL 391
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384 | Back alignment and structure |
|---|
Score = 215 bits (549), Expect = 2e-65
Identities = 75/341 (21%), Positives = 131/341 (38%), Gaps = 30/341 (8%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
+E VI+G G A AR + + + L +++ + Y +P L+ G+ +K
Sbjct: 2 SERAPLVIIGTGLAGYNLAREWRKLD-GETPLLMITADDGRSYSKPMLSTGFS--KNKDA 58
Query: 109 ARLPGFHTCVGSGGERQTPE-WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
L P ++ ++ VT ID Q + ++ +Y L+
Sbjct: 59 DGL-----------AMAEPGAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEV-RYRDLV 106
Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
+A G R P + G ++ I D+ D + ++V+++G G IG E A
Sbjct: 107 LAWGAEPIRVPVE-GDAQDALYPINDLEDYARFRQAAAGKRRVLLLGAGLIGCEFANDLS 165
Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287
++ P ++ L P+ A+ + + GV+F +G + +L+ G
Sbjct: 166 SGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRF-HLGPVLASLKK--AGEGLEA 222
Query: 288 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAA 346
L DG I D +V +G +P GL +V GI VD RT I+A+GD A
Sbjct: 223 HLSDGEVIPCDLVVSAVGLRPRTELAFAAGL--AVNRGIVVDRSLRTSHANIYALGDCAE 280
Query: 347 FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLP 387
+V A+ + L + Y P
Sbjct: 281 VDGLNL------LYVMPLMACARALAQTLAGNPS-QVAYGP 314
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 4e-60
Identities = 76/425 (17%), Positives = 147/425 (34%), Gaps = 59/425 (13%)
Query: 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
+++ + +I+G G A AA+ + + +++ E Y PY RP L + +K
Sbjct: 6 HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLN--EIIAKNKS 60
Query: 108 PARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLI 167
+ +WY++ I++I + TSID + + SG+ +KY LI
Sbjct: 61 IDDIL-IKK----------NDWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLI 109
Query: 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV 227
+A+G A++ + + + DA + + K ++GGG +G+E+A A +
Sbjct: 110 IASGSIANKIK--VPH-ADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAII 166
Query: 228 GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287
+I + L+R + + G+K ++ +
Sbjct: 167 DSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIY-TNSNFE------------- 212
Query: 288 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 347
E G I + ++ +G KP + + + S GI V+ T + I+A GDVA F
Sbjct: 213 --EMGDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEF 269
Query: 348 PLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYE-GSPRKVWW 405
K + + + +Y +P +V S
Sbjct: 270 YGKNPGLINIA--NKQGEVAGLN-----ACGEDASYSEIIPSPILKVSGISIIS------ 316
Query: 406 QFFGDNVGETIEIGNFDPKIATF---WIDSGKLKG-VLVESGSPEEFQLLPTLARSQPFV 461
GD + + + K+ ++ G L S
Sbjct: 317 --CGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAVI--GDVSLGTKLKKAIDSSKSF 372
Query: 462 DKAKL 466
D
Sbjct: 373 DNISS 377
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367 | Back alignment and structure |
|---|
Score = 181 bits (461), Expect = 1e-52
Identities = 72/299 (24%), Positives = 124/299 (41%), Gaps = 34/299 (11%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
VIVG G A+ + + ++ KE Y +P L+ + RL
Sbjct: 12 VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLS--HYIAGFIPRNRL--- 62
Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
+ +WY+++GIE+ + ID ++ +IT G++ Y +L++ATG A
Sbjct: 63 --------FPYSLDWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEV-PYDTLVLATGARA 113
Query: 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234
I G + +R + DAD + S+E + + +++GGG+IG+E+A
Sbjct: 114 REPQ--IKG-KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVK 170
Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST 294
+I L L+ + + ++ GVKF L + L +
Sbjct: 171 LIHRGAMFLG--LDEELSNMIKDMLEETGVKFF--------LNSELLEANEEGVLTNSGF 220
Query: 295 IDADTIVIGIGAKPTVSPFERVGLNSSVG-GIQVDGQFRTRMPGIFAIGDVAAFPLKMY 352
I+ + IG P V R G+ G GI +D FRT ++AIGD A + +
Sbjct: 221 IEGKVKICAIGIVPNVDLARRSGI--HTGRGILIDDNFRTSAKDVYAIGDCAEYSGIIA 277
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452 | Back alignment and structure |
|---|
Score = 168 bits (427), Expect = 5e-47
Identities = 62/230 (26%), Positives = 96/230 (41%), Gaps = 15/230 (6%)
Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
+PE G + + VT++D E +T LITN K Y LI+ TG + P
Sbjct: 63 SSPEELSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTV-PP 121
Query: 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
G V+ ++ DA L KAK + ++G GYIG E+A A + +I
Sbjct: 122 IPGIDSSRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGH 181
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299
+L + F + Y+ +GV + +G+ + E D + DG I +D
Sbjct: 182 ERVLYKYFDKEFTDILAKDYEAHGVN-LVLGSKVAAFE-EVDDEIITK-TLDGKEIKSDI 238
Query: 300 IVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
++ IG +P + + N G I D + IFA GD AA
Sbjct: 239 AILCIGFRPNTELLKGKVAMLDN---GAIITDEYMHSSNRDIFAAGDSAA 285
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452 | Back alignment and structure |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 47/228 (20%), Positives = 92/228 (40%), Gaps = 14/228 (6%)
Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQTLI---TNSGKLLKYGSLIVATGCTASRFPEKI 181
T E + + I+++ V ++D+E Q + + Y LI+ATG + +
Sbjct: 63 ITEEELRRQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIR- 121
Query: 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
G + + ++ A A + LE ++ V V+G G IGME V K + +
Sbjct: 122 GSQTEKLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLEN 181
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301
LL + F + ++ ++ V ++ +E + I D+ +
Sbjct: 182 LLPKYFDKEMVAEVQKSLEKQAVI-FHFEETVLGIE--ETANGIVL-ETSEQEISCDSGI 237
Query: 302 IGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
+ P ++ + + L+ I VD +T +P +FAIGD +
Sbjct: 238 FALNLHPQLAYLDKKIQRNLD---QTIAVDAYLQTSVPNVFAIGDCIS 282
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447 | Back alignment and structure |
|---|
Score = 161 bits (411), Expect = 9e-45
Identities = 55/232 (23%), Positives = 96/232 (41%), Gaps = 18/232 (7%)
Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFPE 179
T E + +G+ + +T+I ++ L++ ++ Y LI++ G
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
G L ++ +R A L + VVV+G GYIG+E A A T+I
Sbjct: 121 P-GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVID 179
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDA 297
+ L + + N + + G +++ E DGRV V + D + DA
Sbjct: 180 ILDRPLGVYLDKEFTDVLTEEMEANNIT-IATGETVERYE--GDGRVQKV-VTDKNAYDA 235
Query: 298 DTIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
D +V+ +G +P + + + N G I+ D RT P +FA+GD
Sbjct: 236 DLVVVAVGVRPNTAWLKGTLELHPN---GLIKTDEYMRTSEPDVFAVGDATL 284
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472 | Back alignment and structure |
|---|
Score = 160 bits (407), Expect = 4e-44
Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 16/233 (6%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
+ PE+++ +E + + +ID T L T + LKY L++A G A+R P
Sbjct: 70 RDPEFFRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPP 129
Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVG-WKLDTT 234
+ G L GV + ++ +A+ + ++ + K V+VGGG+IG+E+A + W +DTT
Sbjct: 130 --VEGMDLAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTT 187
Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST 294
++ + ++ + SL+Q ++N V V G + LE G +G+VA V + D T
Sbjct: 188 VVELADQIMPGFTSKSLSQMLRHDLEKNDVV-VHTGEKVVRLE-GENGKVARV-ITDKRT 244
Query: 295 IDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 346
+DAD +++ G P GL G I VD + RT P IFA GD
Sbjct: 245 LDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVT 297
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* Length = 490 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 9e-44
Identities = 56/240 (23%), Positives = 107/240 (44%), Gaps = 25/240 (10%)
Query: 125 QTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTASRFP--- 178
E + G ++ + PV SID + +T L+ + Y LI ATG P
Sbjct: 97 SDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKG 156
Query: 179 -------EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGW 229
+ L + +++ ++ +I+ LE K+V VVG GYIG+E+A A
Sbjct: 157 AEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGVELAEAFQRK 216
Query: 230 KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289
+ +I + L + L + +++G++ + G ++K + +G+V + +
Sbjct: 217 GKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQ-LAFGETVKEVA--GNGKVEKI-I 272
Query: 290 EDGSTIDADTIVIGIGAKPTVSPFE---RVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
D + D D +++ +G +P + + N G V+ + T +PG++AIGD A
Sbjct: 273 TDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRN---GAFLVNKRQETSIPGVYAIGDCAT 329
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-43
Identities = 56/230 (24%), Positives = 105/230 (45%), Gaps = 15/230 (6%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
QT E ++ +++ V I+ E++T + TN Y LI++ G
Sbjct: 97 QTVERMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPS 156
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
+ +R+V D D + + ++ K + V+GGG+IG+E+ ++ T++
Sbjct: 157 IPGIEEAKALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLV 216
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
N ++ +A + + + V+ + + LE +G V V+L+ GS I
Sbjct: 217 EMANQVMPP-IDYEMAAYVHEHMKNHDVE-LVFEDGVDALE--ENGAV--VRLKSGSVIQ 270
Query: 297 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVA 345
D +++ IG +P S + GL G I+V+ +F+T P I+AIGD
Sbjct: 271 TDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAI 320
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-42
Identities = 57/227 (25%), Positives = 101/227 (44%), Gaps = 11/227 (4%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIG 182
PE + +K GI++ V +D K ++ L+ A G + P G
Sbjct: 63 YPPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQV-PAIEG 121
Query: 183 GYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
L GV DA A+ +E K + VV++GGGYIG+E+A A + T+I
Sbjct: 122 VNLKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE 181
Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300
+L+R F + E+ + V +++ +E + RV V + D A+ +
Sbjct: 182 RVLRRSFDKEVTDILEEKL-KKHVN-LRLQEITMKIE--GEERVEKV-VTDAGEYKAELV 236
Query: 301 VIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 346
++ G KP + +++G+ G I + + +T + ++A GDVA
Sbjct: 237 ILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAE 283
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 2e-42
Identities = 57/231 (24%), Positives = 111/231 (48%), Gaps = 15/231 (6%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
+ + +++K GI+ + VT +D EK+ T Y L++ATG
Sbjct: 97 RNVKTFRDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPE 156
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
+ G L GVH ++ + DA+ ++ +LE K + V ++GGG IG+E+A V +I
Sbjct: 157 WE-GRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMI 215
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
+H+ ++ +A+ + ++ ++ + ++K + + RV AV+ D T
Sbjct: 216 ERNDHIG-TIYDGDMAEYIYKEADKHHIE-ILTNENVKAFK--GNERVEAVET-DKGTYK 270
Query: 297 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 346
AD +++ +G KP E + + G I+V+ +T + ++A GD A
Sbjct: 271 ADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCAT 321
|
| >1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-41
Identities = 55/231 (23%), Positives = 98/231 (42%), Gaps = 21/231 (9%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
TPE + ++ I + V +I+ E+QT TN Y LI++ G +
Sbjct: 62 YTPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGAS----A 117
Query: 179 EKIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
+G +R++ D DA+ ++ + KV+VVG GY+ +EV L T+I
Sbjct: 118 NSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLI 177
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
+ + +L + Q + + ++ I + G++ + + G
Sbjct: 178 HRSDKIN-KLMDADMNQPILDELDKREIP-YRLNEEINAIN-GNE-----ITFKSGKVEH 229
Query: 297 ADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAA 346
D I+ G+G P E + G I V+ +F T +P I+AIGD+A
Sbjct: 230 YDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIAT 280
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-39
Identities = 56/250 (22%), Positives = 110/250 (44%), Gaps = 33/250 (13%)
Query: 125 QTPEWYKEK-GIEMIYQDPVTSIDIEKQT-----LITNSGKLLKYGSLIVATGCTASRFP 178
QTPE +K + +E+ + V +ID + L+ S Y +L+++ G P
Sbjct: 62 QTPESFKARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPP 121
Query: 179 EKIGGY-LPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTI 235
I G P H +R++ D D ++ +++ + VVGGG+IG+E+ + + TT+
Sbjct: 122 --IPGVDNPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTL 179
Query: 236 IFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE------------------ 277
+ + ++ +A Q + GV +++G ++ +
Sbjct: 180 LELADQVMTP-VDREMAGFAHQAIRDQGVD-LRLGTALSEVSYQVQTHVASDAAGEDTAH 237
Query: 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFRTRMP 336
G ++ L +G ++ D +++ IG +P GL +GGI+V+ +T P
Sbjct: 238 QHIKGHLSLT-LSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDP 296
Query: 337 GIFAIGDVAA 346
I+A+GD
Sbjct: 297 AIYAVGDAVE 306
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-25
Identities = 44/212 (20%), Positives = 84/212 (39%), Gaps = 26/212 (12%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKKVVVVGGGYIGME 221
++A G P + G+ ISS ++++KK+ +VG GYI +E
Sbjct: 146 LIAVGNKPVFPP------VKGIENT---------ISSDEFFNIKESKKIGIVGSGYIAVE 190
Query: 222 VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD 281
+ +D+ I N +L R F S+ E ++N + V A + ++ SD
Sbjct: 191 LINVIKRLGIDSYIFARGNRIL-RKFDESVINVLENDMKKNNINIVT-FADVVEIKKVSD 248
Query: 282 GRVAAVKLEDGSTI-DADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFRTRMPGI 338
++ + L DG D ++ +G P E++ + ++ I VD RT + I
Sbjct: 249 KNLS-IHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQRTSVNNI 307
Query: 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 370
+A+GD + + + +
Sbjct: 308 YAVGDCCMVKKSKEIEDLNLLKLYNEERYLNK 339
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 5e-25
Identities = 52/201 (25%), Positives = 90/201 (44%), Gaps = 29/201 (14%)
Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
++ +G+ + +++ATG + G ++S LEK
Sbjct: 146 LSVTGERISAEKILIATGAKIVSNSA-----IKGSDLC---------LTSNEIFDLEKLP 191
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
K +V+VGGGYIG+E A G + TT++ + +L R F L Q G+ +
Sbjct: 192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL-RNFDYDLRQLLNDAMVAKGISII 250
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVG 323
A++ +++ + V L +G TI AD +++ G P + ER G +N G
Sbjct: 251 Y-EATVSQVQSTENCYN--VVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEF-G 306
Query: 324 GIQVDGQFRTRMPGIFAIGDV 344
+ VD + T + I+A+GDV
Sbjct: 307 AVVVDEKMTTNVSHIWAVGDV 327
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 8e-25
Identities = 52/188 (27%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++ATG S P+ +PGV Y I S L ++V VVG GYIG+
Sbjct: 136 LIATGGRPSH-PD-----IPGVEYG---------IDSDGFFALPALPERVAVVGAGYIGV 180
Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280
E+ G T + + L F P +++ ++ G + A K + +
Sbjct: 181 ELGGVINGLGAKTHLFEMFDAPL-PSFDPMISETLVEVMNAEGPQLHT-NAIPKAVVKNT 238
Query: 281 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMP 336
DG + ++LEDG + D ++ IG +P E G N G I VD T +
Sbjct: 239 DGSLT-LELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEK-GYIVVDKYQNTNIE 296
Query: 337 GIFAIGDV 344
GI+A+GD
Sbjct: 297 GIYAVGDN 304
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-24
Identities = 53/191 (27%), Positives = 86/191 (45%), Gaps = 32/191 (16%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++ATG P +PG+ + ISS L + ++V+ VGGG+I +
Sbjct: 160 LLATGSWPQM-PA-----IPGIEHC---------ISSNEAFYLPEPPRRVLTVGGGFISV 204
Query: 221 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277
E A A T+ + N +L R F ++ + + NG++ + + +
Sbjct: 205 EFAGIFNAYKPPGGKVTLCYRNNLIL-RGFDETIREEVTKQLTANGIEIMT-NENPAKVS 262
Query: 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRT 333
+DG V E G T+D D +++ IG P + VG L GG+QVD RT
Sbjct: 263 LNTDGSKH-VTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPK-GGVQVDEFSRT 320
Query: 334 RMPGIFAIGDV 344
+P I+AIGD+
Sbjct: 321 NVPNIYAIGDI 331
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-24
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 28/201 (13%)
Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
+ SGK + +++A G S + + PG I+S L
Sbjct: 125 LLASGKTVTAERIVIAVGGHPSP-HDAL----PGHELC---------ITSNEAFDLPALP 170
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
+ +++ GGGYI +E A G + TT+I+ +L F + + ++ G++ +
Sbjct: 171 ESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEIL-SRFDQDMRRGLHAAMEEKGIRIL 229
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVG 323
I+++ A +DGR I AD +++ +G P + E G N G
Sbjct: 230 C-EDIIQSVSADADGRRV-ATTMKHGEIVADQVMLALGRMPNTNGLGLEAAGVRTNEL-G 286
Query: 324 GIQVDGQFRTRMPGIFAIGDV 344
I VD RT PGI+A+GDV
Sbjct: 287 AIIVDAFSRTSTPGIYALGDV 307
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-24
Identities = 47/191 (24%), Positives = 79/191 (41%), Gaps = 32/191 (16%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++ATG + G I+S L++A K+ + VGGGYI +
Sbjct: 156 LLATGSWPQH-LG-----IEGDDLC---------ITSNEAFYLDEAPKRALCVGGGYISI 200
Query: 221 EVA---AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277
E A A + + + +L R F L ++ + + NG+ + +
Sbjct: 201 EFAGIFNAYKARGGQVDLAYRGDMIL-RGFDSELRKQLTEQLRANGINVRT-HENPAKVT 258
Query: 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRT 333
+DG V E G+ D D +++ IG P E+ G + + G I+VD +T
Sbjct: 259 KNADGTRH-VVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKN-GAIKVDAYSKT 316
Query: 334 RMPGIFAIGDV 344
+ I+AIGDV
Sbjct: 317 NVDNIYAIGDV 327
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 5e-23
Identities = 57/188 (30%), Positives = 81/188 (43%), Gaps = 27/188 (14%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
+VATG A PE I PG S LE+ KKVVVVG GYIG+
Sbjct: 153 LVATGGKAIF-PENI----PGFELG---------TDSDGFFRLEEQPKKVVVVGAGYIGI 198
Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280
E+A G +T ++ +L R F + Y + G+ K + I +E
Sbjct: 199 ELAGVFHGLGSETHLVIRGETVL-RKFDECIQNTITDHYVKEGINVHK-LSKIVKVEKNV 256
Query: 281 DGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS-PFERVG--LNSSVGGIQVDGQFRTRMP 336
+ + + D +I D D ++ IG K + E VG LNS I D T +P
Sbjct: 257 ETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSH-DQIIADEYQNTNVP 315
Query: 337 GIFAIGDV 344
I+++GDV
Sbjct: 316 NIYSLGDV 323
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 3e-22
Identities = 45/188 (23%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++ATG P LPG I+S L++ K+V ++G GYIG+
Sbjct: 135 VIATGGRPIV-PR-----LPGAELG---------ITSDGFFALQQQPKRVAIIGAGYIGI 179
Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280
E+A + + T++ E+ LL F P L+ + G++ ++ LE +
Sbjct: 180 ELAGLLRSFGSEVTVVALEDRLL-FQFDPLLSATLAENMHAQGIETHL-EFAVAALERDA 237
Query: 281 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQFRTRMP 336
G V + D+++ +G P E G + S+ G + D T +P
Sbjct: 238 QGTTL-VAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSN-GMVPTDAYQNTNVP 295
Query: 337 GIFAIGDV 344
G++A+GD+
Sbjct: 296 GVYALGDI 303
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 97.1 bits (242), Expect = 4e-22
Identities = 61/380 (16%), Positives = 113/380 (29%), Gaps = 83/380 (21%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
+++GG A AA T + + +++K ++ Y RPAL
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS-YFRPALP-------------HVAI 50
Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT----NSGKLLKYGSLIVAT 170
+ E EKGI+ + V ID + + S +Y +IV
Sbjct: 51 GVRDVDELKVDLSEALPEKGIQFQ-EGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGI 109
Query: 171 GCTASRFPEKIGGYLPGVHYIRDVADADAL---ISSLEKAKKVV--------------VV 213
G E + G+ + + + A L + S + + V
Sbjct: 110 GAHL--ATELVKGWDKYGYSVCEPEFATKLREKLESFQGGNIAIGSGPFYQGHNPKPKVP 167
Query: 214 GGGYIGMEVAAAAVGWKL---------------DTTIIF--PENHLLQRLFTPSLAQRYE 256
+ A +++ + P +L +P+ +
Sbjct: 168 ENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSD--LSPNSRKAVA 225
Query: 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI--GIGAKPTV--SP 312
+Y Q G+K + IK + + E G+TI AD ++ P + S
Sbjct: 226 SIYNQLGIK-LVHNFKIKEIREH------EIVDEKGNTIPADITILLPPYTGNPALKNST 278
Query: 313 FERVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC 371
L G I D + ++A+GD + + A + +
Sbjct: 279 P---DLVDDGGFIPTDLNMVSIKYDNVYAVGDANSMT---VPKLGY-----LAVMTGRIA 327
Query: 372 ---IKALLSAQTHTYDYLPY 388
+ L T Y P
Sbjct: 328 AQHLANRLGVPTKVDKYYPT 347
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* Length = 409 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 23/121 (19%), Positives = 45/121 (37%), Gaps = 29/121 (23%)
Query: 208 KKVVVVGGGYIGMEVAAAA---VGWKLDTTIIFPENHLLQRLFTPSL------------- 251
KV+V+GG + + A VG K D +I F P+L
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS---YFRPALPHVAIGVRDVDEL 58
Query: 252 AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAK 307
+ + G++F + +++ ++A + V + + D +++GIGA
Sbjct: 59 KVDLSEALPEKGIQFQE--GTVEKIDA--KSSM--VYYTKPDGSMAEEEYDYVIVGIGAH 112
Query: 308 P 308
Sbjct: 113 L 113
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 7e-21
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++ATG + + G + I+S L+++ K +VVG Y+ +
Sbjct: 152 VIATGGRPRYPTQ-----VKG--------ALEYGITSDDIFWLKESPGKTLVVGASYVAL 198
Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280
E A G LDTT++ L R F ++ + + +G +F+K G +++
Sbjct: 199 ECAGFLTGIGLDTTVMMRSIPL--RGFDQQMSSLVTEHMESHGTQFLK-GCVPSHIKKLP 255
Query: 281 DGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQVDGQF 331
++ V ED + T DT++ IG P E+ G N I VD Q
Sbjct: 256 TNQLQ-VTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE 314
Query: 332 RTRMPGIFAIGDV 344
T +P I+AIGDV
Sbjct: 315 ATSVPHIYAIGDV 327
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 7e-21
Identities = 48/192 (25%), Positives = 83/192 (43%), Gaps = 33/192 (17%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++A G R+P+ G G I+S L++ K +VVG GYIG+
Sbjct: 155 VIAVGGRP-RYPDIPGAVEYG-------------ITSDDLFSLDREPGKTLVVGAGYIGL 200
Query: 221 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278
E A +G + T++ + +L R F +A+ ++ G+ F++ ++E
Sbjct: 201 ECAGFLKGLG--YEPTVMV-RSIVL-RGFDQQMAELVAASMEERGIPFLR-KTVPLSVEK 255
Query: 279 GSDGRVAA----VKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDGQFR 332
DG++ V+ + S DT++ IG K V G+ I VD Q
Sbjct: 256 QDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPVDSQEA 315
Query: 333 TRMPGIFAIGDV 344
T + I+A+GD+
Sbjct: 316 TNVANIYAVGDI 327
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523 | Back alignment and structure |
|---|
Score = 94.7 bits (236), Expect = 7e-21
Identities = 46/201 (22%), Positives = 86/201 (42%), Gaps = 20/201 (9%)
Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK--AKKVVVVG 214
+GK+ K +LI+A G +PGV+ A + L+ VVVVG
Sbjct: 169 AGKVFKAKNLILAVGAGPGTLD------VPGVNAKGVFDHATLVEE-LDYEPGSTVVVVG 221
Query: 215 GGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGAS 272
G +E A G + T ++ L + ++ G++ G++
Sbjct: 222 GSKTAVEYGCFFNATGRR--TVMLVRTEPLK-LIKDNETRAYVLDRMKEQGMEI-ISGSN 277
Query: 273 IKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPF-ERVGLN-SSVGGIQV 327
+ +E ++GRV AV I+ D + +G+G +P + + +GL+ G + V
Sbjct: 278 VTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLV 337
Query: 328 DGQFRTRMPGIFAIGDVAAFP 348
+ +T +P ++A+GD+ P
Sbjct: 338 NEYLQTSVPNVYAVGDLIGGP 358
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304 | Back alignment and structure |
|---|
Score = 91.8 bits (229), Expect = 8e-21
Identities = 51/318 (16%), Positives = 90/318 (28%), Gaps = 70/318 (22%)
Query: 55 VIVGGG----NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPAR 110
++G G NA+ R A ++ + R +T+
Sbjct: 10 AVIGAGPAGLNASLVLGR-------ARKQIALFDNNTN----RNRVTQNS---------- 48
Query: 111 LPGFHTCVG-SGGE-----RQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLL 161
GF T G E Y Y+ V I + ++T
Sbjct: 49 -HGFITRDGIKPEEFKEIGLNEVMKY---PSVHYYEKTVVMITKQSTGLFEIVTKDHTKY 104
Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGV--HYIRDVA-----DADALISSLEKAKKVVVVG 214
+++ATG FP +P V +Y + + D K + ++++
Sbjct: 105 LAERVLLATGMQE-EFPS-----IPNVREYYGKSLFSCPYCDGW-----ELKDQPLIIIS 153
Query: 215 GGYIG-MEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASI 273
+ + W D I L+Q + + SI
Sbjct: 154 ENEDHTLHMTKLVYNWSTDLVIATN---------GNELSQTIMDELSNKNIPVIT--ESI 202
Query: 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLN-SSVGGIQVDGQFR 332
+ L+ G G + V+ G I+ I E++G S G +D R
Sbjct: 203 RTLQ-GEGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGR 261
Query: 333 TRMPGIFAIGDVAAFPLK 350
T I+ G+
Sbjct: 262 TSEKNIYLAGETTTQGPS 279
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478 | Back alignment and structure |
|---|
Score = 93.3 bits (233), Expect = 1e-20
Identities = 51/210 (24%), Positives = 89/210 (42%), Gaps = 36/210 (17%)
Query: 154 ITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA- 207
I SGK +++ATG S P + +PG I+S LE+
Sbjct: 140 IEVSGKKYTAPHILIATGGMPST-PHESQ--IPGASLG---------ITSDGFFQLEELP 187
Query: 208 KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
+ V+VG GYI +E+A +A+G T+++ + +L R F ++ + + GV+
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALG--SKTSLMIRHDKVL-RSFDSMISTNCTEELENAGVE 244
Query: 266 FVKVGASIKNLEAGSDGRVAAV-------KLEDGSTIDADTIVIGIGAKPTVSPF--ERV 316
+K + +K ++ G ++ D D ++ IG P ++
Sbjct: 245 VLK-FSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKL 303
Query: 317 G--LNSSVGGIQVDGQFRTRMPGIFAIGDV 344
G + G I VD T + GI+A+GDV
Sbjct: 304 GIQTDDK-GHIIVDEFQNTNVKGIYAVGDV 332
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 2e-20
Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 38/197 (19%)
Query: 167 IVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKA-KKVVVVGGGYIGM 220
++ATG +PG D + ISS L K +VVG Y+ +
Sbjct: 178 LIATGERPRY-LG-----IPG--------DKEYCISSDDLFSLPYCPGKTLVVGASYVAL 223
Query: 221 EVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK--VGASIKNL 276
E A A +G LD T++ + LL R F +A + + +++G+KF++ V ++ +
Sbjct: 224 ECAGFLAGIG--LDVTVMV-RSILL-RGFDQDMANKIGEHMEEHGIKFIRQFVPIKVEQI 279
Query: 277 EAGSDGRVAAVKLEDGST-----IDADTIVIGIGAKPTVSPF--ERVG--LNSSVGGIQV 327
EAG+ GR+ V + ++ + +T+++ IG E VG +N G I V
Sbjct: 280 EAGTPGRLR-VVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPV 338
Query: 328 DGQFRTRMPGIFAIGDV 344
+ +T +P I+AIGD+
Sbjct: 339 TDEEQTNVPYIYAIGDI 355
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 4e-20
Identities = 49/221 (22%), Positives = 83/221 (37%), Gaps = 46/221 (20%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
T+ D + ++VATG + LP D + +++
Sbjct: 133 ATAADGSTSEHEADV--------VLVATGASPRI--------LPSAQP-----DGERILT 171
Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS---- 250
L+ ++VVG G G E +G + T++ ++H+L P
Sbjct: 172 WRQLYDLDALPDHLIVVGSGVTGAEFVDAYTELG--VPVTVVASQDHVL-----PYEDAD 224
Query: 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310
A E+ + + GV+ A ++ G V + DG T++ ++ IG+ P
Sbjct: 225 AALVLEESFAERGVRL-FKNARAASVTRTGAG--VLVTMTDGRTVEGSHALMTIGSVPNT 281
Query: 311 SPF--ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 348
S ERVG+ G + VD RT GI+A GD
Sbjct: 282 SGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLL 322
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 6e-20
Identities = 56/330 (16%), Positives = 95/330 (28%), Gaps = 63/330 (19%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
VI+G G AA E + + ++S Y P+
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF-QFVPSNPW---------------- 50
Query: 115 HTCVGSGG------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIV 168
VG G + + KGI I ID E Q + G + Y L++
Sbjct: 51 ---VGVGWKERDDIAFPIRHYVERKGIHFI-AQSAEQIDAEAQNITLADGNTVHYDYLMI 106
Query: 169 ATGCTASRFPEKIGG---YLPGVHYIRDVADADALISSLEKAKK----VVVVGGGYIGME 221
ATG + E + G + V I V A+ + + + +V+
Sbjct: 107 ATGPKLA--FENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGAMAGASCF 164
Query: 222 VAAAAVGWKLDT--------------TIIFPENHLLQRL--FTPSLAQRYEQLYQQNGVK 265
A + + T I E ++ + ++ G++
Sbjct: 165 GPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224
Query: 266 FVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPFERVGLNS 320
+ +E + E G + ++ K V V
Sbjct: 225 -AYTNCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKG-VPAVAGVEGLC 280
Query: 321 SVGG-IQVDGQFR-TRMPGIFAIGDVAAFP 348
+ GG + VD R + IFA G A P
Sbjct: 281 NPGGFVLVDEHQRSKKYANIFAAGIAIAIP 310
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 6e-07
Identities = 27/121 (22%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 204 LEKAKKVVVVGGGYIGMEVAAA---AVGWKLDTTIIFPENHLLQRLFTPSL--------- 251
+ + VV++G G GM A A+G + T+I ++ F PS
Sbjct: 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF---QFVPSNPWVGVGWKE 57
Query: 252 ----AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307
A ++ G+ F+ S + ++A + + + L DG+T+ D ++I G K
Sbjct: 58 RDDIAFPIRHYVERKGIHFIA--QSAEQIDA--EAQ--NITLADGNTVHYDYLMIATGPK 111
Query: 308 P 308
Sbjct: 112 L 112
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466 | Back alignment and structure |
|---|
Score = 90.7 bits (226), Expect = 8e-20
Identities = 46/213 (21%), Positives = 84/213 (39%), Gaps = 27/213 (12%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
V + + ++ T +I+A+G ++ LPGV Y D +
Sbjct: 121 VKTDEGKEIEAETRY--------MIIASGAETAKLR------LPGVEYCLTSDDIFGYKT 166
Query: 203 SLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259
S K + +V++G GYIG+E+A+ +G + II + L L + L
Sbjct: 167 SFRKLPQDMVIIGAGYIGLEIASIFRLMGVQT--HIIEMLDRALITLEDQDIVN---TLL 221
Query: 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKP-TVSPFER 315
+ K + + ++ D + +I +++V+ G +P
Sbjct: 222 SILKLNI-KFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGARE 280
Query: 316 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
+GL+ S GI VD +T +P +FA GD
Sbjct: 281 IGLSISKTGIVVDETMKTNIPNVFATGDANGLA 313
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 50/236 (21%), Positives = 92/236 (38%), Gaps = 39/236 (16%)
Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---- 187
+ +++ E + T+ G ++I+A G A P +IG PG
Sbjct: 79 NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFE-PRRIG--APGEREF 135
Query: 188 ----VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
V+Y V + K+V++VGGG +AV W L+ L+
Sbjct: 136 EGRGVYYA--VKSKAEF-----QGKRVLIVGGG-------DSAVDWALNLLDTARRITLI 181
Query: 244 QR--LF--TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST----- 294
R F + + + +++ ++ + ++ +E D RV + T
Sbjct: 182 HRRPQFRAHEASVKELMKAHEEGRLEVL-TPYELRRVEG--DERVRWAVVFHNQTQEELA 238
Query: 295 IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
++ D ++I G + P GL I+VD T +PG++A GD+ +P K
Sbjct: 239 LEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK 294
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 5e-19
Identities = 52/224 (23%), Positives = 89/224 (39%), Gaps = 35/224 (15%)
Query: 146 IDIEKQ-----TLITNSGKLLKYGSLIVATGCTA--SRFPEKIGGY----LPGVHYIRDV 194
K TN+G + + ++++A G A R ++G V+Y V
Sbjct: 98 TKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA--V 155
Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--LFT--PS 250
+ K K+VV+VGGG +A+ W + L+ R F
Sbjct: 156 KSVEDF-----KGKRVVIVGGG-------DSALDWTVGLIKNAASVTLVHRGHEFQGHGK 203
Query: 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGA 306
A E+ + + + ++E S+G + V L T++AD ++I IG
Sbjct: 204 TAHEVERARANGTIDVY-LETEVASIE-ESNGVLTRVHLRSSDGSKWTVEADRLLILIGF 261
Query: 307 KPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
K + P R L + VD +T + G++A GD+A +P K
Sbjct: 262 KSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK 305
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 4e-18
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)
Query: 203 SLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261
SL K +V+G Y+ +E A D T++ + LL R F +A++ +
Sbjct: 281 SLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMV-RSILL-RGFDQQMAEKVGDYMEN 338
Query: 262 NGVKFVK-------VGASIKNLEAGSDGR-VAAVKLEDGST--IDADTIVIGIGAKPTVS 311
+GVKF K + + E G + DG + +T++ +G +P +S
Sbjct: 339 HGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS 398
Query: 312 PF--ERVG--LNSSVGGIQVDGQFRTRMPGIFAIGDV 344
E VG L+ + G + +T + ++AIGD+
Sbjct: 399 KVLCETVGVKLDKN-GRVVCTDDEQTTVSNVYAIGDI 434
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455 | Back alignment and structure |
|---|
Score = 85.6 bits (213), Expect = 4e-18
Identities = 52/215 (24%), Positives = 102/215 (47%), Gaps = 30/215 (13%)
Query: 145 SIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS- 203
E++ L+ +G+ L+ +++ATG P D + +++S
Sbjct: 112 RFLSERKVLVEETGEELEARYILIATGSAPLI--------PPWAQV-----DYERVVTST 158
Query: 204 ----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256
+ K+++VVGGG IG+E+ +G + ++ + +L +++ E
Sbjct: 159 EALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAE--VIVLEYMDRILP-TMDLEVSRAAE 215
Query: 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE 314
+++++ G+ + G + + + G A V+LE G ++AD +++ +G +P E
Sbjct: 216 RVFKKQGLTI-RTGVRVTAVVPEAKG--ARVELEGGEVLEADRVLVAVGRRPYTEGLSLE 272
Query: 315 RVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 348
GL++ G I VD RTR+P I+AIGDV P
Sbjct: 273 NAGLSTDERGRIPVDEHLRTRVPHIYAIGDVVRGP 307
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458 | Back alignment and structure |
|---|
Score = 85.3 bits (212), Expect = 6e-18
Identities = 49/199 (24%), Positives = 93/199 (46%), Gaps = 24/199 (12%)
Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKA-KKVVVVG 214
G+ ++ L++ATG ++ LP + V + +AL + + + +VVVG
Sbjct: 129 DGQRIQCEHLLLATGSSSVE--------LPMLPLGGPVISSTEAL--APKALPQHLVVVG 178
Query: 215 GGYIGMEVAAAAVGW-KL--DTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGA 271
GGYIG+E+ A + KL +++ +L + L + ++ G+ +G
Sbjct: 179 GGYIGLELGIA---YRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLGIAL-HLGH 233
Query: 272 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQVDG 329
S++ E G +A ++AD +++ +G +P F E + L + I +D
Sbjct: 234 SVEGYENG--CLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDE 291
Query: 330 QFRTRMPGIFAIGDVAAFP 348
+ +T M ++AIGDVA P
Sbjct: 292 RCQTSMHNVWAIGDVAGEP 310
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464 | Back alignment and structure |
|---|
Score = 82.2 bits (204), Expect = 5e-17
Identities = 49/216 (22%), Positives = 89/216 (41%), Gaps = 34/216 (15%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
V D +++ ++ I+ATG + +PG +V + I
Sbjct: 123 VDLNDGGTESVTFDN--------AIIATGSSTRL--------VPGTSLSANVVTYEEQIL 166
Query: 203 SLEKAKKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPS----LAQRYE 256
S E K +++ G G IGME G +D TI+ E L R P+ +++ E
Sbjct: 167 SRELPKSIIIAGAGAIGMEFGYVLKNYG--VDVTIV--E--FLPR-ALPNEDADVSKEIE 219
Query: 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPF-- 313
+ +++ GV ++++ G V + + + A+ ++ IG P V +
Sbjct: 220 KQFKKLGVTI-LTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGL 278
Query: 314 ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
++ G+ + I VD RT + I+AIGDV
Sbjct: 279 DKAGVALTDRKAIGVDDYMRTNVGHIYAIGDVNGLL 314
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 455 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 1e-16
Identities = 61/207 (29%), Positives = 96/207 (46%), Gaps = 34/207 (16%)
Query: 156 NSGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA-KK 209
+S + + + I+ATG P +I + AL +L + K
Sbjct: 127 DSAQTYTFKNAIIATGSRPIELPNFKFSNRI------------LDSTGAL--NLGEVPKS 172
Query: 210 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
+VV+GGGYIG+E+ A G K+ TI+ +L F +A ++ ++ GV+
Sbjct: 173 LVVIGGGYIGIELGTAYANFGTKV--TILEGAGEILS-GFEKQMAAIIKKRLKKKGVEV- 228
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLN-SS 321
A K E DG V E TIDAD +++ +G +P E++G+ ++
Sbjct: 229 VTNALAKGAEEREDG--VTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTN 286
Query: 322 VGGIQVDGQFRTRMPGIFAIGDVAAFP 348
G I+VD Q RT +P IFAIGD+ P
Sbjct: 287 RGLIEVDQQCRTSVPNIFAIGDIVPGP 313
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* Length = 482 | Back alignment and structure |
|---|
Score = 81.4 bits (202), Expect = 1e-16
Identities = 45/221 (20%), Positives = 93/221 (42%), Gaps = 33/221 (14%)
Query: 143 VTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVA 195
V+ + +G+ ++ + + I+A G ++ P +I +
Sbjct: 127 VSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVTKLPFIPEDPRI------------ID 174
Query: 196 DADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLA 252
+ AL +L++ K++++GGG IG+E+ + +G +L ++ + L+Q L
Sbjct: 175 SSGAL--ALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRL--DVVEMMDGLMQ-GADRDLV 229
Query: 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV 310
+ +++ + V +E DG + + D +++ G P
Sbjct: 230 KVWQKQNEYRFDNI-MVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288
Query: 311 SP--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
E+ G+ + G I+VD Q RT +P I+AIGD+ P
Sbjct: 289 KLISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQP 329
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464 | Back alignment and structure |
|---|
Score = 81.0 bits (201), Expect = 1e-16
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 33/207 (15%)
Query: 157 SGKLLKYGSLIVATGCTASRFP-----EKIGGYLPGVHYIRDVADADALISSLEKA--KK 209
G+ SLI+ATG E + AL +E+ K+
Sbjct: 126 GGERYGAKSLILATGSEPLELKGFPFGEDV------------WDSTRAL--KVEEGLPKR 171
Query: 210 VVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
++V+GGG +G+E+ +G ++ T+I +L P A + ++ G++
Sbjct: 172 LLVIGGGAVGLELGQVYRRLGAEV--TLIEYMPEILP-QGDPETAALLRRALEKEGIRV- 227
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSSV 322
+ E DG ++ +G + D +++ +G KP E+ G+
Sbjct: 228 RTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDE 287
Query: 323 GG-IQVDGQFRTRMPGIFAIGDVAAFP 348
G I+V+ + T +PG++AIGD A P
Sbjct: 288 RGFIRVNARMETSVPGVYAIGDAARPP 314
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 3e-16
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 24/204 (11%)
Query: 152 TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA-KKV 210
L +++ + +VATG + + P +PG+ +AL + + +++
Sbjct: 128 RLNEGGERVVMFDRCLVATGASPAVPP------IPGLKESPYWTSTEAL--ASDTIPERL 179
Query: 211 VVVGGGYIGMEVAA--AAVGWKLDTTIIFPE-NHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
V+G + +E+A A +G K+ T++ N L R P++ + ++ G++
Sbjct: 180 AVIGSSVVALELAQAFARLGSKV--TVL--ARNTLFFR-EDPAIGEAVTAAFRAEGIEV- 233
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--ERVGLN-SSVGG 324
+ V + G + AD +++ G P + G+ ++ G
Sbjct: 234 LEHTQASQVAHMDGEFV--LTTTHG-ELRADKLLVATGRTPNTRSLALDAAGVTVNAQGA 290
Query: 325 IQVDGQFRTRMPGIFAIGDVAAFP 348
I +D RT P I+A GD P
Sbjct: 291 IVIDQGMRTSNPNIYAAGDCTDQP 314
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 4e-16
Identities = 58/222 (26%), Positives = 103/222 (46%), Gaps = 41/222 (18%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
T D Q + T + +++ATG + PG+ D D ++S
Sbjct: 129 ATKADGGTQVIDTKN--------ILIATGSEVTP--------FPGITI-----DEDTIVS 167
Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
S L+K +K+VV+G G IG+E+ + +G + T + H+ +++
Sbjct: 168 STGALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADV--TAVEFLGHVGGVGIDMEISKN 225
Query: 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPT 309
++++ Q+ G KF K+ + SDG++ V +E S I D +++ IG +P
Sbjct: 226 FQRILQKQGFKF-KLNTKVTGATKKSDGKID-VSIEAASGGKAEVITCDVLLVCIGRRPF 283
Query: 310 VSP--FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
E +G+ G I V+ +F+T++P I+AIGDV A P
Sbjct: 284 TKNLGLEELGIELDPRGRIPVNTRFQTKIPNIYAIGDVVAGP 325
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491 | Back alignment and structure |
|---|
Score = 78.7 bits (195), Expect = 9e-16
Identities = 59/219 (26%), Positives = 105/219 (47%), Gaps = 35/219 (15%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRD----VADAD 198
VT+ E+Q L + +++ATG + +PGV D V+
Sbjct: 147 VTNEKGEEQVLEAKN--------VVIATGSDVAG--------IPGVEVAFDEKTIVSSTG 190
Query: 199 ALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255
AL +LEK ++VVGGG IG+E+ + A +G K+ T++ + +L +A++
Sbjct: 191 AL--ALEKVPASMIVVGGGVIGLELGSVWARLGAKV--TVVEFLDTILG-GMDGEVAKQL 245
Query: 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKPTVSP 312
+++ + G+ F K+GA + DG + G T+DA+ ++I G KP+
Sbjct: 246 QRMLTKQGIDF-KLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG 304
Query: 313 --FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 348
+ G+ G +++D F+T + G++AIGDV P
Sbjct: 305 LGLAKAGVVLDSRGRVEIDRHFQTSIAGVYAIGDVVRGP 343
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 37/221 (16%)
Query: 147 DIEKQT----LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG--------VHYIRDV 194
+EKQ + + + ++I+ G A + P K+ L +HY V
Sbjct: 92 SVEKQADGVFKLVTNEETHYSKTVIITAGNGAFK-PRKLE--LENAEQYEGKNLHYF--V 146
Query: 195 ADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
D ++V ++GGG +AV W L I E ++ R +
Sbjct: 147 DDLQKF-----AGRRVAILGGG-------DSAVDWALMLEPIAKEVSIIHRRDKFRAHEH 194
Query: 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-----STIDADTIVIGIGAKPT 309
+ + V L + ++ + LE+ ++ D +++ G +
Sbjct: 195 SVENLHASKVNV-LTPFVPAELIG--EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSS 251
Query: 310 VSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
+ P + GL+ I V T + G FA GD+ + K
Sbjct: 252 LGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK 292
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 54/220 (24%), Positives = 103/220 (46%), Gaps = 39/220 (17%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
V +I+ E + +I+ATG LPGV D ++S
Sbjct: 128 VDTIEGENTVVKGKH--------IIIATGSDVKS--------LPGVTI-----DEKKIVS 166
Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
S L + KK+VV+G GYIG+E+ + +G + T++ + ++ + ++
Sbjct: 167 STGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSE--VTVVEFASEIVP-TMDAEIRKQ 223
Query: 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVS 311
+++ ++ G+KF K+ + ++ DG V+ G + I+AD +++ G P S
Sbjct: 224 FQRSLEKQGMKF-KLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTS 282
Query: 312 P--FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 348
+++G+ + G I V+ +F T + G++AIGDV P
Sbjct: 283 GLNLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGP 322
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 2e-15
Identities = 53/219 (24%), Positives = 106/219 (48%), Gaps = 37/219 (16%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP------EKIGGYLPGVHYIRDVAD 196
VT +D + T +L ++IVATG + FP EKI V+
Sbjct: 128 VTPVDGLEGT--VKEDHILDVKNIIVATGSEVTPFPGIEIDEEKI------------VSS 173
Query: 197 ADALISSLEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
AL SL++ K++ ++GGG IG+E+ + + +G K+ T++ + + +A+
Sbjct: 174 TGAL--SLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKV--TVVEFQPQIGA-SMDGEVAK 228
Query: 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKP 308
++ ++ G+ F K+ + + + D V + +ED ++A+ +++ +G +P
Sbjct: 229 ATQKFLKKQGLDF-KLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRP 287
Query: 309 TVSPF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 344
++ E++GL G + +D QF ++ P I +GDV
Sbjct: 288 YIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* Length = 476 | Back alignment and structure |
|---|
Score = 76.8 bits (190), Expect = 4e-15
Identities = 49/218 (22%), Positives = 90/218 (41%), Gaps = 37/218 (16%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
VT+ D Q L T + +I+A+G +P D D ++
Sbjct: 131 VTAADGSSQVLDTEN--------VILASGSKPVE--------IPPAPV-----DQDVIVD 169
Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
S + K+ V+G G IG+E+ + A +G ++ T++ + L +A+
Sbjct: 170 STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEV--TVLEAMDKFLP-AVDEQVAKE 226
Query: 255 YEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSP- 312
+++ + G+K +GA + E + V V E + D +++ +G +P +
Sbjct: 227 AQKILTKQGLKI-LLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDL 285
Query: 313 -FERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 348
G+ G I VD T +PG++AIGDV
Sbjct: 286 LAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGA 323
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-15
Identities = 47/230 (20%), Positives = 68/230 (29%), Gaps = 51/230 (22%)
Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP----G 187
I + VT + + G+ G LI+A G T PE I G
Sbjct: 71 TIHWVEGR-VTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPE-IAGLRERWGSA 127
Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
V + + K+ V+ + + A W T
Sbjct: 128 VFHCPYCHGYELDQ--------------GKIGVIAASPMAIHHALMLPDWGETTFFT--- 170
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299
+ P Q L GV+ I+ + G V L DG +I
Sbjct: 171 ----NGIVEPDADQH-ALL-AARGVRVE--TTRIREIA-GHAD----VVLADGRSIALAG 217
Query: 300 IVIGIGAKPTVSPFERVGL----NSSVGGIQVDGQFRTRMPGIFAIGDVA 345
+ + TV E++G I D +T GIFA GDVA
Sbjct: 218 LFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVA 267
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} Length = 468 | Back alignment and structure |
|---|
Score = 75.6 bits (187), Expect = 8e-15
Identities = 44/216 (20%), Positives = 90/216 (41%), Gaps = 39/216 (18%)
Query: 143 VTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202
V +D +++ L T I+ATG + LP + + D ++S
Sbjct: 125 VNGLDGKQEMLETKK--------TIIATGSEPTE--------LPFLPF-----DEKVVLS 163
Query: 203 S-----LEKA-KKVVVVGGGYIGMEVAA--AAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
S L + K +VV+GGG IG+E+ + A +G ++ T++ +
Sbjct: 164 STGALALPRVPKTMVVIGGGVIGLELGSVWARLGAEV--TVVEFAPRCAP-TLDEDVTNA 220
Query: 255 YE-QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 311
L + +KF + D V+ ++G T+ + +++ +G +P
Sbjct: 221 LVGALAKNEKMKF-MTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTG 279
Query: 312 PF--ERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDV 344
+++ + + G +++ F T +P ++AIGDV
Sbjct: 280 GLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 315
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 3e-14
Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 40/219 (18%)
Query: 148 IEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS---- 203
+++ TL + + +++ATG + Y + L+++
Sbjct: 122 LDEHTLQVDDHSQVIAKRIVIATGSRPN--------YPEFLAA-----AGSRLLTNDNLF 168
Query: 204 -LEKA-KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQL 258
L K V V G G IG+E+ A + + + L + + E+
Sbjct: 169 ELNDLPKSVAVFGPGVIGLELGQA---LSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKT 224
Query: 259 YQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSPFERV 316
+ + A + + D + G T ++ G K V +++
Sbjct: 225 FNEEFY--FDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV---DKL 279
Query: 317 GL-NSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFP 348
GL N+S+ D +T + IF GD
Sbjct: 280 GLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTL 318
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 9e-14
Identities = 51/235 (21%), Positives = 87/235 (37%), Gaps = 38/235 (16%)
Query: 134 GIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
+++I + + + T SG +LK S+I+ATG + +P
Sbjct: 281 DVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAK----WRNMN--VPGE 334
Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
GV Y D L K K+V V+GGG G+E A G T++
Sbjct: 335 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL---- 384
Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST-----I 295
+ + Q +++ V + A ++ G +V ++ D + +
Sbjct: 385 EFAPEMKADQVLQ--DKVRSLKNVDIIL-NAQTTEVK-GDGSKVVGLEYRDRVSGDIHSV 440
Query: 296 DADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
I + IG P E + +G I +D + T + G+FA GD P K
Sbjct: 441 ALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK 495
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319 | Back alignment and structure |
|---|
Score = 68.7 bits (169), Expect = 5e-13
Identities = 55/242 (22%), Positives = 86/242 (35%), Gaps = 57/242 (23%)
Query: 134 GIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP------ 186
+ V SI + I + +I+ TG T + +G +
Sbjct: 86 AKIREGVE-VRSIKKTQGGFDIETNDDTYHAKYVIITTGTT----HKHLG--VKGESEYF 138
Query: 187 --GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFP 238
G Y + D L K K+VV +GGG G A V TII
Sbjct: 139 GKGTSY---CSTCDG---YLFKGKRVVTIGGGNSGAIAAISMSEYVKNV------TII-- 184
Query: 239 ENHLLQRLFTPSLAQRYEQLYQQ----NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST 294
+ + E Y Q + ++ A + + G +V VK +D +T
Sbjct: 185 --EYMPKY-------MCENAYVQEIKKRNIPYIM-NAQVTEIV-GDGKKVTGVKYKDRTT 233
Query: 295 -----IDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFP 348
I+ D + I +G P S + G+ G I VD + RT +PG++A GDV +
Sbjct: 234 GEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGN 293
Query: 349 LK 350
Sbjct: 294 FA 295
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 9e-13
Identities = 58/240 (24%), Positives = 92/240 (38%), Gaps = 48/240 (20%)
Query: 134 GIEMIYQDP---VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP-- 186
+++I + +E + T SG +LK S+IVATG + +P
Sbjct: 70 DVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK----WRNMN--VPGE 123
Query: 187 ------GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
GV Y D L K K+V V+GGG G+E A +D I
Sbjct: 124 DQYRTKGVTY---CPHCDG---PLFKGKRVAVIGGGNSGVEAA-------IDLAGIVEHV 170
Query: 241 HLLQRLFTPSL-AQRY--EQLYQQNGVKFVK--VGASIKNLEAGSDGRVAAVKLEDGST- 294
LL+ P + A + ++L V + +K G +V ++ D +
Sbjct: 171 TLLEFA--PEMKADQVLQDKLRSLKNVDIILNAQTTEVK----GDGSKVVGLEYRDRVSG 224
Query: 295 ----IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
I+ I + IG P + E + +G I +D + T + G+FA GD P K
Sbjct: 225 DIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 284
|
| >1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit); electron transport(flavocytochrome); HET: FAD HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 401 | Back alignment and structure |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 61/324 (18%), Positives = 99/324 (30%), Gaps = 66/324 (20%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
V+VGGG AA+ + ++ +
Sbjct: 6 VVVGGGTGGATAAKYIKLAD-PSIEVTLIEPNTD-------------------------Y 39
Query: 115 HTCVGS----GGERQTPEWYKE------KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
+TC S GG+R+ GI+++ D T ID +K+ + T G Y
Sbjct: 40 YTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVV-HDSATGIDPDKKLVKTAGGAEFGYD 98
Query: 165 SLIVATGCTASRFPEKIGGYLP-----GVHYIRDVADADAL---ISSLEKAKKVVVV--- 213
+VA G +KI GY H + L + + VV+
Sbjct: 99 RCVVAPGIELI--YDKIEGYSEEAAAKLPHAWKAGEQTAILRKQLEDMADGGTVVIAPPA 156
Query: 214 ------GGGYIGMEVAAAAV---GWKLDTTIIFPENHL-LQRLFTPSLAQRYEQLYQQNG 263
G Y A + I+ Q F+ + Y +
Sbjct: 157 APFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAM 216
Query: 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 323
++ G ++ DG V+ G AD I + I + + GL + G
Sbjct: 217 IE-WHPGPDSAVVKV--DGGEMMVETAFGDEFKADVINL-IPPQRAGKIAQIAGLTNDAG 272
Query: 324 GIQVDGQ-FR-TRMPGIFAIGDVA 345
VD + F + GI IGD +
Sbjct: 273 WCPVDIKTFESSIHKGIHVIGDAS 296
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 66.8 bits (163), Expect = 8e-12
Identities = 57/324 (17%), Positives = 112/324 (34%), Gaps = 61/324 (18%)
Query: 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRF------PEKI 181
E K+ G+++I ++ +I TL Y + + G + +
Sbjct: 246 ELMKDLGVKIICGKSLSENEITLNTLKEEG-----YKAAFIGIGLPEPKTDDIFQGLTQD 300
Query: 182 GGYLPGVHYIRDVADADALISSLEKA------KKVVVVGGGYIGMEVAAAAV--GWKLDT 233
G+ ++ VA + + V+V+G G + A +A+ G +
Sbjct: 301 QGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCATSALRCGAR-RV 359
Query: 234 TIIFPENHLLQRLFTPSLAQRYE-QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-- 290
++F ++ F A E +L ++ +F+ S + + GR+ AV+
Sbjct: 360 FLVF------RKGFVNIRAVPEEVELAKEEKCEFL-PFLSPRKVI-VKGGRIVAVQFVRT 411
Query: 291 -----------DGS--TIDADTIVIGIGAKPTVSP--FERVGLN-SSVGGIQVDGQ-FRT 333
+ + AD ++ G+ + + +VD + +T
Sbjct: 412 EQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQT 471
Query: 334 RMPGIFAIGDVAAFPLKMYDRTAR--VEHVDHARQSAQ--HC-IKALLSAQTHTYDYLPY 388
P +FA GD+ A VE V+ +Q++ H I+A A LP
Sbjct: 472 SEPWVFAGGDIV--------GMANTTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPL 523
Query: 389 FYSRVFEYEGSPRKVWWQFFGDNV 412
FY+ V + S +F
Sbjct: 524 FYTPVDLVDISVEMAGLKFINPFG 547
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 7e-11
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 56/236 (23%)
Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
+ ++ D V I+ + T K S+I+ G + P ++ G G
Sbjct: 84 EVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGR--G 140
Query: 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 241
+ Y + ADA L K + V V+GGG +E A + V +I +
Sbjct: 141 ISY---CSVADA---PLFKNRVVAVIGGGDSALEGAEILSSYSTKV------YLIHRRDT 188
Query: 242 LLQRLFTPSLAQRYEQLYQQ-----NGVKFV--KVGASIKNLEAGSDGRVAAVKLED--- 291
+ + +Y + V+FV V IK D V V +E+
Sbjct: 189 F-----------KAQPIYVETVKKKPNVEFVLNSVVKEIK-----GDKVVKQVVVENLKT 232
Query: 292 --GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDV 344
++ + + I IG P + G+ + G I+VD RT +PG+FA GD
Sbjct: 233 GEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDC 288
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 3e-10
Identities = 44/255 (17%), Positives = 81/255 (31%), Gaps = 87/255 (34%)
Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
G++ V + + ++ GK + S+I+ATG + R + G G
Sbjct: 73 GLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGK--G 129
Query: 188 VHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDT 233
V ++ K+V V+GGG +E A V
Sbjct: 130 VSTCATCDGFFYKN--------------KEVAVLGGGDTAVEEAIYLANICKKV------ 169
Query: 234 TIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFV--KVGASIKNLEAGS 280
+I H L+ N ++F+ V IK G
Sbjct: 170 YLI----HRRDGFRCAPITLEHAK-------------NNDKIEFLTPYVVEEIK----GD 208
Query: 281 DGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQ 330
V+++ +++ + I +G + ++ + G I VD
Sbjct: 209 ASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS 268
Query: 331 FRTRMPGIFAIGDVA 345
+T + G+FA GD+
Sbjct: 269 MKTNVQGLFAAGDIR 283
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 43/234 (18%), Positives = 73/234 (31%), Gaps = 35/234 (14%)
Query: 124 RQTPEWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT--ASR 176
+ E+ + +E+ + P+T DI + + +I ATG T
Sbjct: 443 GRVKEYREAVLAELPNVEIYRESPMTGDDIVE----------FGFEHVITATGATWRTDG 492
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG--YIGMEVAAAAVGWKLDTT 234
LP ++ + D L KKVVV Y+G VA + +
Sbjct: 493 VARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVS 552
Query: 235 IIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-- 292
I+ P + R ++ +NGV V + + A G V
Sbjct: 553 IVTPGAQVSSWTNNTFEVNRIQRRLIENGVARV-TDHA---VVAVGAGGVTVRDTYASIE 608
Query: 293 STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346
++ D +V+ P + + G I + IGD A
Sbjct: 609 RELECDAVVMVTARLPREELYLDLVARRDAGEI----------ASVRGIGDAWA 652
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 2e-09
Identities = 41/228 (17%), Positives = 80/228 (35%), Gaps = 33/228 (14%)
Query: 143 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS-RFPEKIGGYLPGVHYI--RDVADA 197
V + + ++ G+ ++I ATG PE G + +
Sbjct: 99 VQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP 158
Query: 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-PENHLLQRLFTPSLAQRYE 256
+V ++GGG G ++ A T I L + L +R
Sbjct: 159 APF-----AGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERAT 213
Query: 257 QLY--QQNGVKFVKVGASIKN-------LEAGSDGRVAA-----------VKLEDGSTID 296
+ + QQ G + + L+A + G +AA ++ DG+
Sbjct: 214 ERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERA 273
Query: 297 ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVD--GQFRTRMPGIFAIG 342
D ++ G +P +S + + L + G ++VD G +P ++ +G
Sbjct: 274 FDAVIWCTGFRPALSHLKGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 7e-09
Identities = 62/394 (15%), Positives = 112/394 (28%), Gaps = 114/394 (28%)
Query: 91 YERPALTKG----------------YLF-PLDKKPARLPGFHTCVGSGGERQTPEWYKEK 133
+ L+K LF L K V R ++
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE--MVQKFVE-EVLRINYKFLMSP 97
Query: 134 GIEMIYQDP--VTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHY 190
I+ + P +T + IE++ + N ++ KY SR +
Sbjct: 98 -IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---------NVSR-LQP-------YLK 139
Query: 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTI-------IF------ 237
+R AL L AK V++ G G A V L + IF
Sbjct: 140 LRQ-----AL-LELRPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIFWLNLKN 191
Query: 238 ---PENHL--LQRL---FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289
PE L LQ+L P+ R + ++ + A ++ L + L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK-LRIHSIQAELRRLLKSKPYENCLLVL 250
Query: 290 ED---GSTIDA-D----TIVI--------GIGA-----------KPTVSPFERVGLNSSV 322
+ +A + ++ + A T++P E L
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310
Query: 323 GGIQVDG---QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379
+ + T P + +A +HV+ + + I++ L+
Sbjct: 311 LDCRPQDLPREVLTTNP--RRLSIIAESIRDGLATWDNWKHVNCDKLT--TIIESSLNVL 366
Query: 380 THTYDYLPYFYS-RVFEYEGS--PRKV----WWQ 406
+Y F VF + P + W+
Sbjct: 367 E-PAEYRKMFDRLSVFP-PSAHIPTILLSLIWFD 398
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315 | Back alignment and structure |
|---|
Score = 54.4 bits (132), Expect = 2e-08
Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 87/255 (34%)
Query: 134 GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLP 186
G++ V I T+ GK ++IV TG + F ++ G
Sbjct: 76 GLKHEM-VGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKAGFKGEDEFFGK-- 132
Query: 187 GVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLD 232
GV ++ K+V V+GGG +E A + +
Sbjct: 133 GVSTCATCDGFFYKN--------------KEVAVLGGGDTALEEALYLANICSKI----- 173
Query: 233 TTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFV--KVGASIKNLEAG 279
+I H ++++ +N ++ + + G
Sbjct: 174 -YLI----HRRDEFRAAPSTVEKVK-------------KNEKIELITSASVDEVY----G 211
Query: 280 SDGRVAAVKL--EDG--STIDADTIVIGIGAKPTVSPFERVGLNSSV-----GGIQVDGQ 330
VA VK+ +DG ++ I +G ++ G + VD +
Sbjct: 212 DKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLK 271
Query: 331 FRTRMPGIFAIGDVA 345
+T + G+FA GD+
Sbjct: 272 MQTSVAGLFAAGDLR 286
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 52/254 (20%), Positives = 83/254 (32%), Gaps = 88/254 (34%)
Query: 134 GIEMIYQDPVTSIDIEKQ------TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGG 183
G ++ D V + + T+ +G+ + ++I+ATG + P + G
Sbjct: 79 GAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEY-RAKAVILATGADPRKLGIPGEDNFWG 136
Query: 184 YLPGVHY--------IRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGW 229
GV + KKVVV+GGG +E A V
Sbjct: 137 K--GVSTCATCDGFFYKG--------------KKVVVIGGGDAAVEEGMFLTKFADEV-- 178
Query: 230 KLDTTIIFPENH----------LLQRLFTPSLAQRYEQLYQQNG-VKFV--KVGASIKNL 276
T+I H R F N +KF+ I+
Sbjct: 179 ----TVI----HRRDTLRANKVAQARAF-------------ANPKMKFIWDTAVEEIQ-- 215
Query: 277 EAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF 331
V+ VKL + S + D + I IG P + + G + V +
Sbjct: 216 ---GADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEI 272
Query: 332 RTRMPGIFAIGDVA 345
T +P +FA GDV+
Sbjct: 273 YTNIPMLFAAGDVS 286
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 21/163 (12%), Positives = 47/163 (28%), Gaps = 21/163 (12%)
Query: 167 IVATGCTASRFPEKIGGY--LPGV-HYIRDVADA-DALISSLEKAKKVVVVGGG--YIGM 220
I+ATG + + +PG + D + + K+VV++ ++
Sbjct: 484 IIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAP 543
Query: 221 EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ---------------QNGVK 265
+A + TI+ + FT +L++ ++
Sbjct: 544 SLAEKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRME 603
Query: 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308
+ G I+ D++V+ G
Sbjct: 604 IYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHS 646
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 48/213 (22%), Positives = 78/213 (36%), Gaps = 31/213 (14%)
Query: 162 KYGSLIVATGCTASRFPEKIGGYLPGVHY--------IRDVADADALISSLE----KAKK 209
K+ +++VATG +R + G L + + K
Sbjct: 207 KHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKH 266
Query: 210 VVVVGGGYIGMEVAAAAV--GWKLDTTI-IFPENHLLQRLFTPSLAQR--YEQLYQQNGV 264
VVV+GGG M+ A+ G + ++ + A+ E ++Q
Sbjct: 267 VVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPE 326
Query: 265 KFV---KVGA----SIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVSP--F 313
F V I A + GR +E GS T+ AD ++ +G +P P F
Sbjct: 327 GFTGDTVVTGVRAVRIHLGVADATGRQTPQVIE-GSEFTVQADLVIKALGFEPEDLPNAF 385
Query: 314 ERVGLNSSV-GGIQVD-GQFRTRMPGIFAIGDV 344
+ L + G + VD T M G+FA GD+
Sbjct: 386 DEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 5e-06
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 23/214 (10%)
Query: 143 VTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200
VT+I + T+ T + + VATG G+HY ++ D D
Sbjct: 111 VTNISADDAYYTIATTTETY-HADYIFVATGDYNFPKKPFK----YGIHY-SEIEDFDNF 164
Query: 201 ISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254
+ VV+GG G + A + + TT + + +P QR
Sbjct: 165 -----NKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQR 219
Query: 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPF 313
+ +Q + V ++K + + + + G ++ ++ G T +P
Sbjct: 220 LGNVIKQGARIEMNVHYTVK--DIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPI 277
Query: 314 ERVGLNSSVGGIQVDGQFR-TRMPGIFAIGDVAA 346
+ ++ I++ TR P IF IG
Sbjct: 278 VQQLFVTTNQDIKLTTHDESTRYPNIFMIGATVE 311
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 8e-06
Identities = 48/308 (15%), Positives = 93/308 (30%), Gaps = 96/308 (31%)
Query: 48 ANENREFVIVGGGNAAGYAARTFVEHGM------ADGRLCIVSKEAYAPYERPALTKGYL 101
A + + +VG G A A G A + G
Sbjct: 370 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEI------------------GGQ 411
Query: 102 FPLDKKPARLPGFHTCVGSGGERQTPEWY----KEKGIEMIYQDPVTSIDIEKQTLITNS 157
F + K+ F+ +T +Y + G+ + VT+ ++
Sbjct: 412 FNIAKQIPGKEEFY---------ETLRYYRRMIEVTGVTLKLNHTVTADQLQA------- 455
Query: 158 GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGY 217
+ I+A+G P + G+ + + ++ D L KV ++G G
Sbjct: 456 -----FDETILASGIVPRTPP------IDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGG 504
Query: 218 IGMEVA---------------AAAVGWKLDTTIIFP---------------ENHLLQRLF 247
IG + A W +D+++ + +LQR
Sbjct: 505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKA 564
Query: 248 T-------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300
+ + + GVK + G S + ++ D + V + + D +
Sbjct: 565 SKPGQGLGKTTGWIHRTTLLSRGVKMI-PGVSYQKID---DDGLHVVINGETQVLAVDNV 620
Query: 301 VIGIGAKP 308
VI G +P
Sbjct: 621 VICAGQEP 628
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 4e-05
Identities = 46/241 (19%), Positives = 89/241 (36%), Gaps = 64/241 (26%)
Query: 134 GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR--FP--EKIGGYLPG 187
G ++ +D V S+ + +++T G+ + ++I+A G A P +++ G G
Sbjct: 85 GADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGR--G 141
Query: 188 VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA------AAAVGWKLDTTIIFPENH 241
V A D + + + V+GGG ME A A +V T++ H
Sbjct: 142 VSS---CATCDGFFF---RDQDIAVIGGGDSAMEEATFLTRFARSV------TLV----H 185
Query: 242 ----------LLQRLF-----TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA 286
+L R + V G +++ G++
Sbjct: 186 RRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVT----GLRVRDTNTGAE----- 236
Query: 287 VKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGLNSSVGGIQVDGQF-RTRMPGIFAIGDV 344
+T+ + + IG +P + ++ G + V G+ T +PG+FA GD+
Sbjct: 237 ------TTLPVTGVFVAIGHEPRSGLVREAIDVDPD-GYVLVQGRTTSTSLPGVFAAGDL 289
Query: 345 A 345
Sbjct: 290 V 290
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Query: 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRM 335
L + GRVAA + + A +V +G + P + + G I G
Sbjct: 294 LVSDGSGRVAAKDTGEREELPAQLVVRSVGYRG--VPTPGLPFDDQSGTIPNVGGRINGS 351
Query: 336 PGIFAIGDVA 345
P + +G +
Sbjct: 352 PNEYVVGWIK 361
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 489 | |||
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 100.0 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 100.0 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 100.0 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 100.0 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 100.0 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 100.0 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 100.0 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 100.0 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 100.0 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 100.0 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 100.0 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 100.0 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 100.0 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 100.0 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 100.0 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 100.0 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 100.0 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 100.0 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 100.0 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 100.0 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 100.0 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 100.0 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 100.0 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 100.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 100.0 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 100.0 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 100.0 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 100.0 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 100.0 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 100.0 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 100.0 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 100.0 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 100.0 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 100.0 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 100.0 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 100.0 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 100.0 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 100.0 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 100.0 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 100.0 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 100.0 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 100.0 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 100.0 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 100.0 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 100.0 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 100.0 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 100.0 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 100.0 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 100.0 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 100.0 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 100.0 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 100.0 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 100.0 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 100.0 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 100.0 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 100.0 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 100.0 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 100.0 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 100.0 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 100.0 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 100.0 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 100.0 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 100.0 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 100.0 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 100.0 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 100.0 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 100.0 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 100.0 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 100.0 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 100.0 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 100.0 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 100.0 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 99.98 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.97 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.97 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 99.97 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.97 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.97 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.97 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.97 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.96 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.96 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.94 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.92 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.92 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.91 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.88 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.8 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 99.69 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 99.61 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.58 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 99.4 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 99.22 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 99.2 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 99.15 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 99.08 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 99.07 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 99.0 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 98.99 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.98 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 98.97 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.95 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.93 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 98.88 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.87 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.86 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.85 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.85 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 98.83 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 98.82 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 98.79 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.79 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.78 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 98.76 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 98.74 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.71 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.71 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 98.7 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.66 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 98.66 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.64 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 98.64 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 98.63 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.63 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 98.62 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.62 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.59 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 98.59 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 98.58 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.57 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.57 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.57 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.57 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.55 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.55 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.54 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.54 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.54 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 98.54 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 98.53 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.53 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 98.52 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 98.52 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 98.51 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.51 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 98.5 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.5 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 98.5 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.49 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.48 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.48 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 98.47 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 98.45 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.44 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.44 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.43 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.42 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.42 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.42 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 98.41 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 98.4 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.4 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.4 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.4 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 98.39 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.39 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.39 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 98.38 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 98.38 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.38 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 98.37 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.37 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 98.37 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 98.35 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.35 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 98.35 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.34 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.34 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.32 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 98.32 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 98.32 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.32 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 98.31 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 98.3 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 98.29 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 98.28 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.28 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.27 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 98.26 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 98.26 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.25 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.25 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.24 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.24 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 98.23 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.23 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.22 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 98.22 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.22 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 98.22 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 98.22 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.21 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.21 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.2 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 98.2 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 98.19 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 98.18 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.17 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.17 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.16 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 98.16 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.16 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.15 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 98.15 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 98.15 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 98.14 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 98.14 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 98.13 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 98.13 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.13 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 98.13 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.13 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.12 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.11 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 98.1 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.1 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 98.09 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 98.09 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.09 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 98.09 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 98.08 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.06 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.05 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.05 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 98.04 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.04 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.04 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.03 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 98.03 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 98.03 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.03 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 98.02 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 98.01 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 98.01 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 98.01 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.0 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.0 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.0 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.98 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 97.97 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.97 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.97 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.97 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.96 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.96 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 97.95 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.93 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.93 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.93 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.92 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.91 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 97.91 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 97.9 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 97.89 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.88 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.87 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.85 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 97.85 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.85 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.84 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.84 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 97.83 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 97.82 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.82 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.81 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.8 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.8 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 97.79 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.77 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.77 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 97.76 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.76 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 97.74 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 97.69 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.64 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.63 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.62 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 97.6 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.6 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 97.6 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.6 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.59 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.57 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.56 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 97.55 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 97.54 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.53 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 97.53 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 97.52 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.51 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.51 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.51 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.49 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.46 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.45 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.43 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.43 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.43 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.42 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.41 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 97.32 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 97.3 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.28 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.27 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.27 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 97.26 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.26 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.26 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.25 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.24 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.24 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.22 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.21 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.19 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.18 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.18 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.16 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.14 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.12 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.09 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.03 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.03 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.01 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.99 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 96.97 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 96.95 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 96.94 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 96.94 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.89 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.89 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.78 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 96.77 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 96.74 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.73 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 96.71 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.66 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 96.62 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 96.58 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.54 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 96.43 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.4 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.34 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 96.34 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 96.32 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.29 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.28 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.13 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.01 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 95.84 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 95.77 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.75 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 95.7 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 95.57 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 95.51 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.51 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 95.38 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.18 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 94.98 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 94.94 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.83 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 94.72 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 94.5 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 94.36 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 94.23 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 94.16 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 93.92 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 93.89 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 93.74 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 93.72 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 93.71 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 93.55 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 93.55 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 93.52 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 93.46 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.46 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 93.41 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 93.39 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 93.39 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 93.33 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 93.3 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.26 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 93.25 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 93.23 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 93.21 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 93.2 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.13 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 93.1 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 93.05 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 92.68 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 92.65 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.61 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 92.54 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 92.45 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 92.41 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 92.24 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 92.2 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 92.18 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 92.15 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 92.13 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 92.06 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 92.06 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 91.99 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.92 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.79 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 91.63 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 91.59 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 91.58 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 91.51 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 91.43 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 91.35 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 91.34 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 91.31 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 91.26 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 91.22 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.22 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 91.05 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 90.89 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 90.81 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 90.78 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.75 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 90.74 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 90.73 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 90.72 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 90.69 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.65 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 90.63 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 90.53 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 90.36 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 90.14 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 90.02 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.94 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 89.88 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 89.67 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 89.52 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 89.48 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 89.36 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 89.18 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 89.15 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 88.99 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 88.93 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 88.9 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 88.68 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 88.59 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 88.41 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 88.28 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 88.12 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 88.05 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 88.01 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 87.95 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 87.54 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 87.46 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 87.43 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 87.39 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 86.99 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 86.98 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 86.95 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 86.95 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 86.9 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 86.89 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 86.82 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 86.81 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 86.74 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 86.64 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 86.58 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 86.35 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 86.29 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 86.14 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 86.12 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 86.08 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 86.02 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 85.87 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 85.77 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 85.75 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 85.69 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 85.69 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 85.49 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 85.41 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 85.32 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 85.24 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 85.24 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 85.2 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 85.12 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 84.91 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 84.83 |
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-59 Score=473.59 Aligned_cols=396 Identities=29% Similarity=0.506 Sum_probs=351.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
++++||||||||+||++||.+|++.|+ +.+|+|||++++.+|++|++++.++.... ....+ .....+
T Consensus 7 ~~~~~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~~~~~~-~~~~~-----------~~~~~~ 73 (415)
T 3lxd_A 7 AERADVVIVGAGHGGAQAAIALRQNGF-EGRVLVIGREPEIPYERPPLSKEYLAREK-TFERI-----------CIRPAQ 73 (415)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC-CSCEEEEESSSSCCBCSGGGGTTTTTTSS-CSGGG-----------BSSCHH
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCc-CCCEEEEecCCCCCcCcccCCHHHHcCCC-CHHHh-----------ccCCHH
Confidence 356899999999999999999999997 67899999999999999999876654321 11111 245678
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcC-C
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK-A 207 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~-~ 207 (489)
++.+.+++++.+++|+.+|++.+.+.+.+|..+.||+||+|||+.|. .|..+|.+.++++++++..++..+...+.. +
T Consensus 74 ~~~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~ 152 (415)
T 3lxd_A 74 FWEDKAVEMKLGAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPR-RLSCVGADLAGVHAVRTKEDADRLMAELDAGA 152 (415)
T ss_dssp HHHHTTEEEEETCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECC-CCBTTSSCCBTEECCCSHHHHHHHHHHHHTTC
T ss_pred HHHHCCcEEEeCCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccC-CCCCCCccccCEEEEcCHHHHHHHHHHhhhcC
Confidence 89999999999999999999999999999999999999999999987 455677777889999999999998887777 9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
++++|||+|++|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.|+++.. +++++..|
T Consensus 153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~-~~~~v~~v 230 (415)
T 3lxd_A 153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRT-GAAMDCIEG-DGTKVTGV 230 (415)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEE-TCCEEEEEE-SSSBEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEE-CCEEEEEEe-cCCcEEEE
Confidence 9999999999999999999999999999999999999889999999999999999999999 999999985 35677789
Q ss_pred EeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccC-CcccccccHHHHHH
Q 011267 288 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY-DRTARVEHVDHARQ 366 (489)
Q Consensus 288 ~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~-~~~~~~~~~~~A~~ 366 (489)
++++|++++||.||+|+|.+|++++++.+|++.+ ++|.||+++||+.|+|||+|||+..+.... |...++++|..|..
T Consensus 231 ~l~dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~A~~ 309 (415)
T 3lxd_A 231 RMQDGSVIPADIVIVGIGIVPCVGALISAGASGG-NGVDVDEFCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQNAND 309 (415)
T ss_dssp EESSSCEEECSEEEECSCCEESCHHHHHTTCCCS-SSEECCTTCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHHHHH
T ss_pred EeCCCCEEEcCEEEECCCCccChHHHHhCCCCcC-CCEEECCCCCcCCCCEEEEEeeeeecCcccCCcceeechHHHHHH
Confidence 9999999999999999999999999999999987 569999999999999999999999887666 77788999999999
Q ss_pred HHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEeccC
Q 011267 367 SAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESG 443 (489)
Q Consensus 367 ~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~ 443 (489)
||+.+|+||++. ..+|..+||||+++|+.. ++++|...+ +.+..++.+ ..|.++|+++|+|+|+++ +|
T Consensus 310 qg~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~ 380 (415)
T 3lxd_A 310 MATAAAKDICGA-PVPYKATPWFWSNQYDLK-------LQTVGLSTGHDNAVLRGDPATRSFSVVYLKGGKVVALDC-VN 380 (415)
T ss_dssp HHHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEEGGGTEEEEEEEETTEEEEEEE-ES
T ss_pred HHHHHHHHhcCC-CCCCCCCCeeEeeeCCcE-------EEEEeCCCCCCEEEEEecCCCCeEEEEEEECCEEEEEEE-EC
Confidence 999999999964 467999999999999865 889997653 556667664 679999999999999996 89
Q ss_pred CHHHhHHHHHHHhcCCCCChhhhcCCC
Q 011267 444 SPEEFQLLPTLARSQPFVDKAKLQQAS 470 (489)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
++.++..+++|+.++..++++.|.++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~ 407 (415)
T 3lxd_A 381 MVKDYVQGKKLVEARAQIAPEQLADAG 407 (415)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHTCTT
T ss_pred ChHHHHHHHHHHHCCCCCCHHHhcCCC
Confidence 999999999999999999988887664
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=468.33 Aligned_cols=394 Identities=29% Similarity=0.476 Sum_probs=350.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
++||||||||+||++||.+|++.|+ +.+|+|||++++.+|++|++++.++.... ....+ .....+++
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~~g~-~~~V~lie~~~~~~y~~~~l~~~~l~~~~-~~~~~-----------~~~~~~~~ 67 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQAKY-PGRIALINDEKHLPYQRPPLSKAYLKSGG-DPNSL-----------MFRPEKFF 67 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC-CSCEEEECCSSSSSBCSGGGGTGGGGSCC-CTTSS-----------BSSCHHHH
T ss_pred CCCEEEEcChHHHHHHHHHHHhhCc-CCCEEEEeCCCCCCCCCccCCHHHHCCCC-CHHHc-----------cCCCHHHH
Confidence 3689999999999999999999997 67899999999999999999976664322 12222 24567889
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcE
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (489)
.+.+++++. ++|+.++++.+.+.+.+|.++.||+||+|||+.|. .|..+|.+.++++++++..++..+...+..++++
T Consensus 68 ~~~~i~~~~-~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~i~g~~~~~v~~~~~~~d~~~l~~~~~~~~~v 145 (404)
T 3fg2_P 68 QDQAIELIS-DRMVSIDREGRKLLLASGTAIEYGHLVLATGARNR-MLDVPNASLPDVLYLRTLDESEVLRQRMPDKKHV 145 (404)
T ss_dssp HHTTEEEEC-CCEEEEETTTTEEEESSSCEEECSEEEECCCEEEC-CCCSTTTTSTTEECCSSHHHHHHHHHHGGGCSEE
T ss_pred HhCCCEEEE-EEEEEEECCCCEEEECCCCEEECCEEEEeeCCCcc-CCCCCCCCCCcEEEECCHHHHHHHHHHhhcCCeE
Confidence 999999999 89999999999999999999999999999999886 4556777778999999999999998888889999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+|||+|++|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.|+++..+ ++++..|+++
T Consensus 146 vViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~-~~~v~~V~~~ 223 (404)
T 3fg2_P 146 VVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHY-GVRATEIAAE-GDRVTGVVLS 223 (404)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEET
T ss_pred EEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEE-CCEEEEEEec-CCcEEEEEeC
Confidence 9999999999999999999999999999999999889999999999999999999999 9999999853 4677789999
Q ss_pred CCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHH
Q 011267 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 370 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 370 (489)
+|++++||.||+|+|.+|++++++.+|++.+ ++|.||+++||+.|+|||+|||+..+....|...+.++|..|..||+.
T Consensus 224 dG~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~Gi~vd~~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~ 302 (404)
T 3fg2_P 224 DGNTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AGIIVDQQLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARC 302 (404)
T ss_dssp TSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEEECTTSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHH
T ss_pred CCCEEEcCEEEECcCCccCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHH
Confidence 9999999999999999999999999999988 459999999999999999999999887777877889999999999999
Q ss_pred HHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHH
Q 011267 371 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEE 447 (489)
Q Consensus 371 ~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (489)
+|+||++. ..+|..+||||+++|+.. ++++|...+ +.+..++.+ .+|.++|+++|+|+|+++ +|++.+
T Consensus 303 aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~ 373 (404)
T 3fg2_P 303 VAARLTGD-AKPYDGYPWFWSDQGDDK-------LQIVGLTAGFDQVVIRGSVAERSFSAFCYKAGKLIGIES-VNRAAD 373 (404)
T ss_dssp HHHHTTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCCEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHH
T ss_pred HHHHhCCC-CCCCCCCCceEeEECCcE-------EEEEeCCCCCCEEEEEecCCCCcEEEEEEECCEEEEEEE-eCCHHH
Confidence 99999964 467999999999999865 889997643 566677664 679999999999999996 899999
Q ss_pred hHHHHHHHhcCCCCChhhhcCCCc
Q 011267 448 FQLLPTLARSQPFVDKAKLQQASS 471 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
+..+++|+.++..++++.|.++..
T Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~ 397 (404)
T 3fg2_P 374 HVFGRKILPLDKSVTPEQAADLSF 397 (404)
T ss_dssp HHHHHHHTTTTCCCCHHHHHCTTS
T ss_pred HHHHHHHHHcCCCCCHHHhcCCCC
Confidence 999999999999999988877653
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-58 Score=468.96 Aligned_cols=391 Identities=27% Similarity=0.447 Sum_probs=345.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
+++|||||||+||++||.+|++.|+ +.+|+|||++++.+|++|++++.++..... ...+ ....+++
T Consensus 2 ~~~vvIIGaG~AGl~aA~~L~~~g~-~~~V~li~~~~~~~y~~~~l~~~~~~g~~~-~~~~------------~~~~~~~ 67 (410)
T 3ef6_A 2 ATHVAIIGNGVGGFTTAQALRAEGF-EGRISLIGDEPHLPYDRPSLSKAVLDGSLE-RPPI------------LAEADWY 67 (410)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEEECSSSSSBCSGGGGTHHHHTSSS-SCCB------------SSCTTHH
T ss_pred CCCEEEEcccHHHHHHHHHHHccCc-CCeEEEEECCCCCCcCCccccHHHhCCCCC-HHHh------------cCCHHHH
Confidence 3589999999999999999999997 678999999999999999998765532211 1111 2356788
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcE
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKV 210 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~v 210 (489)
.+.+++++.+++|+.+|++.+++.+.+|+++.||+||+|||+.|. .|.++|.+.++++++++..++..+.+.+..++++
T Consensus 68 ~~~~i~~~~~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p~-~~~ipG~~~~~v~~~~~~~d~~~l~~~~~~~~~v 146 (410)
T 3ef6_A 68 GEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRAR-TMALPGSQLPGVVTLRTYGDVQVLRDSWTSATRL 146 (410)
T ss_dssp HHTTCEEEESCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCCCTTTTSTTEECCCSHHHHHHHHHHCCTTCEE
T ss_pred HHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEccCCccc-CCCCCCccccceEEeccHHHHHHHHHHhccCCeE
Confidence 999999999999999999999999999999999999999999987 4556787788999999999999998888889999
Q ss_pred EEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 211 VVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 211 vViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
+|||+|++|+|+|..+.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.|+++..+ +.+..|+++
T Consensus 147 vViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~--~~~~~v~~~ 223 (410)
T 3ef6_A 147 LIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVEL-GTGVVGFSGE--GQLEQVMAS 223 (410)
T ss_dssp EEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEEC-SCCEEEEECS--SSCCEEEET
T ss_pred EEECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEe-CCEEEEEecc--CcEEEEEEC
Confidence 9999999999999999999999999999999998889999999999999999999999 9999999843 355578999
Q ss_pred CCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHH
Q 011267 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQH 370 (489)
Q Consensus 291 ~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~ 370 (489)
+|++++||.||+|+|.+|++++++.+|++.+ ++|.||++++|+.|+|||+|||+..+... |...+.++|..|..||+.
T Consensus 224 dg~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~-g~~~~~~~~~~A~~qg~~ 301 (410)
T 3ef6_A 224 DGRSFVADSALICVGAEPADQLARQAGLACD-RGVIVDHCGATLAKGVFAVGDVASWPLRA-GGRRSLETYMNAQRQAAA 301 (410)
T ss_dssp TSCEEECSEEEECSCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEBTT-SSEECCCCHHHHHHHHHH
T ss_pred CCCEEEcCEEEEeeCCeecHHHHHhCCCccC-CeEEEccCeeECCCCEEEEEcceeccCCC-CCeeeechHHHHHHHHHH
Confidence 9999999999999999999999999999988 67999999999999999999999987655 666778899999999999
Q ss_pred HHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHH
Q 011267 371 CIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEE 447 (489)
Q Consensus 371 ~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~ 447 (489)
+|+||++. ..+|..+||||+++|++. ++++|...+ +.+..++.+ ..|.++|+++|+|+|+++ +|++.+
T Consensus 302 aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~ 372 (410)
T 3ef6_A 302 VAAAILGK-NVSAPQLPVSWTEIAGHR-------MQMAGDIEGPGDFVSRGMPGSGAALLFRLQERRIQAVVA-VDAPRD 372 (410)
T ss_dssp HHHHHTTC-CCCCCBCCEEEEEETTEE-------EEEESCSSSSSEEEEESCTTSSSEEEEEEETTEEEEEEE-ESCHHH
T ss_pred HHHHHcCC-CCCCCCCCeeEEEECCce-------EEEEcCCCCCCEEEEEeeCCCCeEEEEEEECCEEEEEEE-ECChHH
Confidence 99999964 467889999999999875 888997653 566677765 678999999999999996 899999
Q ss_pred hHHHHHHHhcCCCCChhhhcCCC
Q 011267 448 FQLLPTLARSQPFVDKAKLQQAS 470 (489)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~ 470 (489)
+..+++|+.++..++++.|.++.
T Consensus 373 ~~~~~~~i~~~~~~~~~~l~~~~ 395 (410)
T 3ef6_A 373 FALATRLVEARAAIEPARLADLS 395 (410)
T ss_dssp HHHHHHHHHHTCBCCHHHHHCTT
T ss_pred HHHHHHHHhCCCCCCHHHhcCCC
Confidence 99999999999999988887664
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-54 Score=440.57 Aligned_cols=403 Identities=29% Similarity=0.475 Sum_probs=342.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++||||||||+||++||..|++.|+ +.+|+|||+++..+|+++++++.++.... ....+ .....++
T Consensus 3 ~~~~vvIIGgG~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~~~~~~~~-~~~~~-----------~~~~~~~ 69 (431)
T 1q1r_A 3 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKA-TAESL-----------YLRTPDA 69 (431)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCS-CSGGG-----------BSSCHHH
T ss_pred CCCcEEEEcCHHHHHHHHHHHHccCc-CCCEEEEECCCCCCCcCCCCcHHHhCCCC-ChHHh-----------cccCHHH
Confidence 45899999999999999999999987 67899999999999999988876553211 11111 1345678
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCc---eEeecCHHHHHHHHHhhcC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG---VHYIRDVADADALISSLEK 206 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~g---v~~~~~~~~~~~~~~~~~~ 206 (489)
+++.+++++.+++|+.++++.+.|.+.+|+++.||+||+|||+.|. .|..+|.+.++ ++++++.+++.++.+.+..
T Consensus 70 ~~~~gv~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~-~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~l~~ 148 (431)
T 1q1r_A 70 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPR-PLPVASGAVGKANNFRYLRTLEDAECIRRQLIA 148 (431)
T ss_dssp HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-CCGGGTTHHHHSTTEEESSSHHHHHHHHHTCCT
T ss_pred HHhCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCcc-CCCCCCcccCCCceEEEECCHHHHHHHHHHhhc
Confidence 8999999999999999999989999999989999999999999987 45556655556 8889999998888887778
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC-CCCcEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG-SDGRVA 285 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~-~~~~v~ 285 (489)
+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.|+++... +++++.
T Consensus 149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~~~~~~v~ 227 (431)
T 1q1r_A 149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRT-GTQVCGFEMSTDQQKVT 227 (431)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEEC-SCCEEEEEECTTTCCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEe-CCEEEEEEeccCCCcEE
Confidence 99999999999999999999999999999999999998878999999999999999999999 9999999852 346666
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHH
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 365 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~ 365 (489)
.|.+++|++++||.||+|+|.+|++++++.+|++.+ ++|.||+++||+.|+|||+|||+..+....|...+.++|..|.
T Consensus 228 ~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~gi~Vd~~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~ 306 (431)
T 1q1r_A 228 AVLCEDGTRLPADLVIAGIGLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNAL 306 (431)
T ss_dssp EEEETTSCEEECSEEEECCCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEEETTTTEEEECCSHHHHH
T ss_pred EEEeCCCCEEEcCEEEECCCCCcCcchhhccCCCCC-CCEEECCCcccCCCCEEEEEeEEEEccccCCceEeeCHHHHHH
Confidence 789999999999999999999999999999999887 5699999999999999999999998766667667788999999
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEecc
Q 011267 366 QSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVES 442 (489)
Q Consensus 366 ~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~ 442 (489)
.||+.+|.||++. ..+|..+|++|+++|+.. ++++|.... +.+..++.+ ..+.++|.++++|+|+++ +
T Consensus 307 ~qg~~aa~~i~g~-~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~ 377 (431)
T 1q1r_A 307 EQARKIAAILCGK-VPRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-V 377 (431)
T ss_dssp HHHHHHHHHHTTC-CCCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-E
T ss_pred HHHHHHHHHhcCC-CCCCCCCCeEEEEECCce-------EEEEeCCCCCCEEEEEccCCCCeEEEEEEeCCEEEEEEE-E
Confidence 9999999999964 457888999999998764 777886543 345555554 457888889999999996 8
Q ss_pred CCHHHhHHHHHHHhcCCCCChhhhcCCC-cHHHHHH
Q 011267 443 GSPEEFQLLPTLARSQPFVDKAKLQQAS-SVEEALE 477 (489)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~ 477 (489)
|+......++.++..+..++...|.++. .+.+.++
T Consensus 378 g~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 413 (431)
T 1q1r_A 378 NRPVEFNQSKQIITDRLPVEPNLLGDESVPLKEIIA 413 (431)
T ss_dssp SCHHHHHHHHHHHHTTCCCCHHHHTCTTSCHHHHHH
T ss_pred CChHHHHHHHHHHHCCCCCCHHHhhCCCCCHHHHHH
Confidence 8888888999999999999988876654 4444444
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-55 Score=441.78 Aligned_cols=375 Identities=21% Similarity=0.302 Sum_probs=318.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
+.++++|||||||+||++||.+|++. +.+|+|||++++.+|.+|++++ ++... .....+ .....
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~~---~~~itlie~~~~~~y~~~~l~~-~l~g~-~~~~~l-----------~~~~~ 69 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALGK---CDDITMINSEKYLPYYRPRLNE-IIAKN-KSIDDI-----------LIKKN 69 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTTT---CSCEEEECSSSSCCBCGGGHHH-HHHSC-CCGGGT-----------BSSCH
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhCC---CCEEEEEECCCCCCcccChhhH-HHcCC-CCHHHc-----------cCCCH
Confidence 55788999999999999999999433 5689999999999999999987 33221 111121 24678
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCC
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 207 (489)
+|+++.+++++++++|+.+|++.++|++.+|+++.||+||+|||++|+. |.++|.+ +++++++.+++.++.+.+..+
T Consensus 70 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~-p~i~G~~--~v~~~~~~~d~~~l~~~l~~~ 146 (385)
T 3klj_A 70 DWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANK-IKVPHAD--EIFSLYSYDDALKIKDECKNK 146 (385)
T ss_dssp HHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CCCTTCS--CEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCC-CCCCCCC--CeEEeCCHHHHHHHHHHhhcC
Confidence 8999999999999999999999999999999999999999999999874 5567754 888999999999998887788
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
++++|||+|++|+|+|..|++.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ ++.++++
T Consensus 147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~-~~~v~~i----------- 214 (385)
T 3klj_A 147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYT-NSNFEEM----------- 214 (385)
T ss_dssp SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEEC-SCCGGGC-----------
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEe-CCEEEEc-----------
Confidence 9999999999999999999999999999999999999889999999999999999999999 8877655
Q ss_pred EeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHH
Q 011267 288 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 367 (489)
Q Consensus 288 ~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~ 367 (489)
|++++||.||+|+|++|++++++.+|++.+ ++|.||+++||+.|+|||+|||+..+... ..+|..|..+
T Consensus 215 ----g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~-~gi~vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~q 283 (385)
T 3klj_A 215 ----GDLIRSSCVITAVGVKPNLDFIKDTEIASK-RGILVNDHMETSIKDIYACGDVAEFYGKN------PGLINIANKQ 283 (385)
T ss_dssp ----HHHHHHSEEEECCCEEECCGGGTTSCCCBS-SSEEECTTCBCSSTTEEECGGGEEETTBC------CCCHHHHHHH
T ss_pred ----CeEEecCeEEECcCcccChhhhhhcCCCcC-CCEEECCCcccCCCCEEEEEeeEecCCCc------ccHHHHHHHH
Confidence 567999999999999999999999999887 46999999999999999999999876532 3478899999
Q ss_pred HHHHHHHHhcCCCCCCCc-CCceeeecccccCCCcceeeeeecCCcC---cEEEEccCCCcEEEEEEECCEEEEEEeccC
Q 011267 368 AQHCIKALLSAQTHTYDY-LPYFYSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWIDSGKLKGVLVESG 443 (489)
Q Consensus 368 g~~~a~~l~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 443 (489)
|+.+|.||++. ..+|.. +|++|+++|+.. ++++|.... +.+.....+..|.++|+++|+|+|+++ +|
T Consensus 284 g~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~g 354 (385)
T 3klj_A 284 GEVAGLNACGE-DASYSEIIPSPILKVSGIS-------IISCGDIENNKPSKVFRSTQEDKYIVCMLKENKIDAAAV-IG 354 (385)
T ss_dssp HHHHHHHHTTC-CCCCCCCCCCCEEEETTEE-------EEEESCCTTCCCSEEEEEECSSCEEEEEEETTEEEEEEE-ES
T ss_pred HHHHHHHhcCC-CcCCCCCCCcEEEEeCCCc-------EEEEcCCCCCCCeEEEEECCCCeEEEEEEECCEEEEEEE-EC
Confidence 99999999964 456765 699999999865 788887653 334442224679999999999999996 88
Q ss_pred CHHHhHHHHHHHhcCCCCChhhhcCCCcHHHHHHH
Q 011267 444 SPEEFQLLPTLARSQPFVDKAKLQQASSVEEALEI 478 (489)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 478 (489)
+......++.+++++.+++.- +|++|.|+.
T Consensus 355 ~~~~~~~~~~~i~~~~~~~~~-----~~~~E~~~~ 384 (385)
T 3klj_A 355 DVSLGTKLKKAIDSSKSFDNI-----SSLDAILNN 384 (385)
T ss_dssp CHHHHHHHHHHHHTTCBCSCC-----SCHHHHHTT
T ss_pred CcHHHHHHHHHHHcCCCcccc-----cCHHHHHhh
Confidence 888888999999998877533 899998863
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-54 Score=436.69 Aligned_cols=388 Identities=26% Similarity=0.405 Sum_probs=329.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
++++||||||||+||++||.+|++.|+ +.+|+|||++++.+|.+|++++.++.... ...+ ...
T Consensus 5 ~~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~~~~~~~~~~~--~~~~-------------~~~- 67 (408)
T 2gqw_A 5 ALKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGD--AEKI-------------RLD- 67 (408)
T ss_dssp -CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTHHHHHCC--GGGS-------------BCC-
T ss_pred CCCCcEEEECChHHHHHHHHHHHccCC-CCeEEEEECCCCCcccCCCCCHHHhCCCc--hhhh-------------hHH-
Confidence 356899999999999999999999987 66899999999999999888765543211 1111 011
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCC-CCCCCCceEeecCHHHHHHHHHhhcCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK-IGGYLPGVHYIRDVADADALISSLEKA 207 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~-~g~~~~gv~~~~~~~~~~~~~~~~~~~ 207 (489)
++++.+++++.+++|+.++++.++|.+.+|.++.||+||+|||++|.. |.. +|.+ ++++++++.+++.++.+.+..+
T Consensus 68 ~~~~~~v~~~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~~~-~~i~~G~~-~~v~~~~~~~~~~~l~~~~~~~ 145 (408)
T 2gqw_A 68 CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRA-LPTLQGAT-MPVHTLRTLEDARRIQAGLRPQ 145 (408)
T ss_dssp CTTSCSCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECC-CGGGTTCS-SCEEECCSHHHHHHHHTTCCTT
T ss_pred HHHHCCCEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCC-CCccCCCC-CcEEEECCHHHHHHHHHHhhcC
Confidence 556789999999889999999999999999899999999999999874 555 6765 7888899999988888777778
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.+++.||++++ +++|++++ + + .|
T Consensus 146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~-~--~---~v 218 (408)
T 2gqw_A 146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRF-ERSVTGSV-D--G---VV 218 (408)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEE-SCCEEEEE-T--T---EE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEe-CCEEEEEE-C--C---EE
Confidence 9999999999999999999999999999999999998778999999999999999999999 99999997 3 2 57
Q ss_pred EeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHH
Q 011267 288 KLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 367 (489)
Q Consensus 288 ~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~ 367 (489)
++++|++++||.||+|+|.+|++++++++|++.++ +|.||+++||+.|+|||+|||+..+....|...+.++|..|..+
T Consensus 219 ~~~~g~~i~~D~vi~a~G~~p~~~l~~~~gl~~~~-gi~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~ 297 (408)
T 2gqw_A 219 LLDDGTRIAADMVVVGIGVLANDALARAAGLACDD-GIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQ 297 (408)
T ss_dssp EETTSCEEECSEEEECSCEEECCHHHHHHTCCBSS-SEECCTTCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHH
T ss_pred EECCCCEEEcCEEEECcCCCccHHHHHhCCCCCCC-CEEECCCCccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHH
Confidence 78899999999999999999999999999998874 59999999999999999999999776555666667789999999
Q ss_pred HHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecC-CcCcEEEEccCC---CcEEEEEEECCEEEEEEeccC
Q 011267 368 AQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGD-NVGETIEIGNFD---PKIATFWIDSGKLKGVLVESG 443 (489)
Q Consensus 368 g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~-~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~ 443 (489)
|+.+|.||++.....|..+|++|+++|+.. ++++|. ...+.+..++.. ..|.++|.++++|+|+++ .|
T Consensus 298 g~~aa~~i~g~~~~~~~~~p~~~~~~~~~~-------~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~-~g 369 (408)
T 2gqw_A 298 GIAVARHLVDPTAPGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VN 369 (408)
T ss_dssp HHHHHHHHHCTTSCCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEESCCCSSSCCEEEEEEETTEEEEEEE-ES
T ss_pred HHHHHHHhcCCCCCcCCCCCeEEEEECCce-------EEEECCCCCCEEEEEccCCCCCCeEEEEEEeCCEEEEEEE-EC
Confidence 999999999643227888999999999865 778886 222445555543 468889999999999996 78
Q ss_pred CHHHhHHHHHHHhcCCCCChhhhcCCCc
Q 011267 444 SPEEFQLLPTLARSQPFVDKAKLQQASS 471 (489)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (489)
...++..++.+++++.+++...+.++..
T Consensus 370 ~~~~~~~~~~~i~~~~~~~~~~l~~~~~ 397 (408)
T 2gqw_A 370 NARDFAPLRRLLAVGAKPDRAALADPAT 397 (408)
T ss_dssp CHHHHHHHHHHHHTTCCCCHHHHHCTTC
T ss_pred ChHHHHHHHHHHHCCCCCChHHhcCCCC
Confidence 8888889999999999999887766643
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-52 Score=429.91 Aligned_cols=405 Identities=23% Similarity=0.363 Sum_probs=310.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCC---CCCCCCccccCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP---ARLPGFHTCVGSGGER 124 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 124 (489)
.+.++||||||||+||++||.+|++.++ +.+|+|||++++.+|.+|++++.++....... ..+.++.... .....
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~-g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~-~~~~~ 85 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKE-RSIYF 85 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCE-EESBS
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhccccccccccc-ccccc
Confidence 4456899999999999999999999865 67999999999999999998886654322100 0000000000 00000
Q ss_pred CChhHH---------HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC----CCceEee
Q 011267 125 QTPEWY---------KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYI 191 (489)
Q Consensus 125 ~~~~~~---------~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~----~~gv~~~ 191 (489)
...+++ .+.+++++++++|+.+|++.++|.+.+|.++.||+||||||++|..+| .++.. .++++++
T Consensus 86 ~~~~~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p~~~~-~~~~~~~~~~~~v~~~ 164 (493)
T 1m6i_A 86 QPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTPRSLS-AIDRAGAEVKSRTTLF 164 (493)
T ss_dssp SCGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEECCCH-HHHTSCHHHHHTEEEC
T ss_pred cchHhhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCCCCCC-CcccccccccCceEEE
Confidence 111111 256899999999999999999999999999999999999999987443 22321 3568888
Q ss_pred cCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHh----CCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 192 RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~----~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
++..++..+...+..+++++|||+|++|+|+|..|.+ .|.+|+++++.+.++.+.+++.+.+.+.+.+++.||+++
T Consensus 165 ~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~ 244 (493)
T 1m6i_A 165 RKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM 244 (493)
T ss_dssp CSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred cCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEE
Confidence 9999988888877789999999999999999999976 478899999998888888899999999999999999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec--CCcEEeCCCCCCCCCCeEEecccc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVA 345 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a 345 (489)
+ ++.|+++..+ ++.+ .|++.+|++++||.||+|+|.+|++++++.+|++.+ +|+|.||++||| .|+|||+|||+
T Consensus 245 ~-~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l~t-~~~IyA~GD~a 320 (493)
T 1m6i_A 245 P-NAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAELQA-RSNIWVAGDAA 320 (493)
T ss_dssp C-SCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTCEE-ETTEEECGGGE
T ss_pred e-CCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCccc-CCCeeEeeeeE
Confidence 9 9999999753 3343 688899999999999999999999999999999886 378999999998 69999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCc----ceeeeeecCCcC-----c--
Q 011267 346 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPR----KVWWQFFGDNVG-----E-- 414 (489)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~----~~~~~~~G~~~~-----~-- 414 (489)
..+....|.. ++++|++|..||+.+|.||++ ...+|...||||++++...+... ...++++|.... .
T Consensus 321 ~~~~~~~g~~-~~~~~~~A~~qg~~aa~ni~g-~~~~~~~~~~~~s~~~~~~~~~~~g~~~~~~~~~G~~~~~~~~~~~~ 398 (493)
T 1m6i_A 321 CFYDIKLGRR-RVEHHDHAVVSGRLAGENMTG-AAKPYWHQSMFWSDLGPDVGYEAIGLVDSSLPTVGVFAKATAQDNPK 398 (493)
T ss_dssp EEEETTTEEE-CCCCHHHHHHHHHHHHHHHTS-CCCCCCCCCEEEEESSTTCEEEEEECCCTTSCEEEEEECCCTTCSHH
T ss_pred eccCcccCcc-ccchHHHHHHHHHHHHHHhcC-CCCCcCCcCceeeeeccCcceEEEeccCCCcceEEeecccccccccc
Confidence 8765544543 577999999999999999996 45689999999999973211000 001233332100 0
Q ss_pred ----------------------EEEE----c-------c-CCCcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhcCCC
Q 011267 415 ----------------------TIEI----G-------N-FDPKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPF 460 (489)
Q Consensus 415 ----------------------~~~~----~-------~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 460 (489)
.... + + ...++.+||+++|+|+|+++ +|+++++..+++||+.+..
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~li~~~~~ 477 (493)
T 1m6i_A 399 SATEQSGTGIRSESETESEASEITIPPSTPAVPQAPVQGEDYGKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQ 477 (493)
T ss_dssp HHHHHHSCSCHHHHSCSCCCC--------------------CCEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCB
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCcEEEEEEeCCEEEEEEE-ecCcchHHHHHHHHhCCCC
Confidence 0000 0 1 12567889999999999996 8999999999999988876
Q ss_pred CC
Q 011267 461 VD 462 (489)
Q Consensus 461 ~~ 462 (489)
++
T Consensus 478 ~~ 479 (493)
T 1m6i_A 478 HE 479 (493)
T ss_dssp CS
T ss_pred CC
Confidence 64
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-49 Score=399.75 Aligned_cols=392 Identities=20% Similarity=0.284 Sum_probs=303.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC-CCCCCCCCccccCCCCCCCChhHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK-KPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
++|||||||+||++||.+|++.|. +.+|+|||++++.+|.++.+++ ++..... ....+ .....+++
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~~-----------~~~~~~~~ 67 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDK-ESDIIIFEKDRDMSFANCALPY-VIGEVVEDRRYAL-----------AYTPEKFY 67 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCS-SSCEEEEESSSCSSBCGGGHHH-HHTTSSCCGGGTB-----------CCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhCCC-CCcEEEEeCCCCCCCCcchhHH-HHcCCccchhhhh-----------hcCHHHHH
Confidence 479999999999999999999986 7899999999999999887764 2211111 11111 13346788
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCC-----CeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh-
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL- 204 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~-----g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~- 204 (489)
++.+++++.+++|+.+|.+.+.+.+.+ +.++.||+||||||++|.. |.+++ ++++.+++..++..+.+.+
T Consensus 68 ~~~~i~~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~-p~i~g---~~~~~~~~~~~~~~l~~~~~ 143 (437)
T 4eqs_A 68 DRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS-LGFES---DITFTLRNLEDTDAIDQFIK 143 (437)
T ss_dssp HHHCCEEEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECC-CCCCC---TTEECCSSHHHHHHHHHHHH
T ss_pred HhcCCEEEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcccc-ccccC---ceEEeeccHHHHHHHHHhhh
Confidence 899999999999999999998776643 3468999999999999864 43333 5678888998888877654
Q ss_pred -cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 205 -~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
..+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.+.+.++++||++++ +++|++++..
T Consensus 144 ~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~-~d~~~~~~~~~~l~~~gV~i~~-~~~v~~~~~~---- 217 (437)
T 4eqs_A 144 ANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKL-MDADMNQPILDELDKREIPYRL-NEEINAINGN---- 217 (437)
T ss_dssp HHTCCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTT-SCGGGGHHHHHHHHHTTCCEEE-SCCEEEEETT----
T ss_pred ccCCcEEEEECCccchhhhHHHHHhcCCcceeeeeecccccc-ccchhHHHHHHHhhccceEEEe-ccEEEEecCC----
Confidence 35789999999999999999999999999999999999984 7999999999999999999999 9999998732
Q ss_pred EEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHH
Q 011267 284 VAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 362 (489)
Q Consensus 284 v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 362 (489)
.+.+++|+++++|.|++|+|++||+++++.+|++.+ +|+|.||+++||++|||||+|||+..+....+.......+.
T Consensus 218 --~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~ 295 (437)
T 4eqs_A 218 --EITFKSGKVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAW 295 (437)
T ss_dssp --EEEETTSCEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCTTCBCSSTTEEECGGGEEEEBSSSSSEECCCSHH
T ss_pred --eeeecCCeEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCCCccCCCCCEEEEEEccCcccccCCccccchhHH
Confidence 578899999999999999999999999999999886 56799999999999999999999998887777777777889
Q ss_pred HHHHHHHHHHHHHhcCCCCCCC-cCCceeeecccccCCCcceeeeeecCCcCc-------EEE--EccC-------CCcE
Q 011267 363 HARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE--IGNF-------DPKI 425 (489)
Q Consensus 363 ~A~~~g~~~a~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~~~--~~~~-------~~~~ 425 (489)
.|.+||+.+|.||++.....+. ..+..+...++.+ +..+|....+ .+. .... ...+
T Consensus 296 ~A~~~g~~~a~ni~g~~~~~~~~~~~~~~~~~~~p~-------ia~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~g~ 368 (437)
T 4eqs_A 296 GAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYT-------FASVGVKPNELKQFDYKMVEVTQGAHANYYPGNSPLH 368 (437)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCCCBCCCEEEEETTEE-------EEEEESCGGGGGGSCEEEEEEEEESSCTTSSSCCEEE
T ss_pred HHHHHHHHHHHHHcCCCCcccccceeEEeeeeccce-------EEEeeCCHHHHHhCCceEEEEecCCchhhcCCCCcEE
Confidence 9999999999999976544432 3333333333322 4455554321 111 1110 1235
Q ss_pred EEEEEE--CCEEEEEEeccCC-HHHhHHH-HHHHhcCCCCC-hhhh--cCCCcHHHH
Q 011267 426 ATFWID--SGKLKGVLVESGS-PEEFQLL-PTLARSQPFVD-KAKL--QQASSVEEA 475 (489)
Q Consensus 426 ~~~~~~--~~~~~g~~~~~~~-~~~~~~~-~~~~~~~~~~~-~~~~--~~~~~~~e~ 475 (489)
.++.++ +++|+|+++++.+ ++++... ..+|.++.+++ ...+ ..||+++++
T Consensus 369 ~Kli~d~~~~~ilGa~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~yhP~~s~~ 425 (437)
T 4eqs_A 369 LRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTEFEVAFAPPYSHP 425 (437)
T ss_dssp EEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCS
T ss_pred EEEEEECCCCEEEEEEEECcCCHHHHHHHHHHHHHcCCcHHHHhcCccccCCCCCch
Confidence 566654 4899999986654 7766655 55678888876 3332 346777654
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=388.08 Aligned_cols=356 Identities=23% Similarity=0.386 Sum_probs=282.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...||||||||+||++||.+|++.| +|+|||+++..+|.++.+++ ++.. ......+ .....++
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g----~V~lie~~~~~~~~~~~l~~-~~~g-~~~~~~~-----------~~~~~~~ 69 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY----EVTVIDKEPVPYYSKPMLSH-YIAG-FIPRNRL-----------FPYSLDW 69 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS----EEEEECSSSSCCCCSTTHHH-HHTT-SSCGGGG-----------CSSCHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC----CEEEEECCCCCccccchhHH-HHhC-CCCHHHh-----------ccCCHHH
Confidence 4569999999999999999998875 79999999998898888765 2221 1111111 2345778
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+++.+++++.+++|+.+|++.++|. .+|.++.||+||||||++|. .|.++| .++++++++..++.++.+.+..+++
T Consensus 70 ~~~~~v~~~~g~~v~~id~~~~~V~-~~g~~~~~d~lViATGs~p~-~p~i~G--~~~v~~~~~~~~~~~l~~~~~~~~~ 145 (367)
T 1xhc_A 70 YRKRGIEIRLAEEAKLIDRGRKVVI-TEKGEVPYDTLVLATGARAR-EPQIKG--KEYLLTLRTIFDADRIKESIENSGE 145 (367)
T ss_dssp HHHHTEEEECSCCEEEEETTTTEEE-ESSCEEECSEEEECCCEEEC-CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSE
T ss_pred HHhCCcEEEECCEEEEEECCCCEEE-ECCcEEECCEEEECCCCCCC-CCCCCC--cCCEEEEcCHHHHHHHHHHhhcCCc
Confidence 8899999999989999999988888 77888999999999999987 455566 5678888888888888776666799
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
++|||+|++|+|+|..|+++|.+|+++++.+++++ +++++.+.+.+.+++.||++++ +++|++++. . .+.+
T Consensus 146 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l~~~gV~i~~-~~~v~~i~~---~---~v~~ 216 (367)
T 1xhc_A 146 AIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIKDMLEETGVKFFL-NSELLEANE---E---GVLT 216 (367)
T ss_dssp EEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHHHHHHHTTEEEEC-SCCEEEECS---S---EEEE
T ss_pred EEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc--CCHHHHHHHHHHHHHCCCEEEc-CCEEEEEEe---e---EEEE
Confidence 99999999999999999999999999999999988 8999999999999999999999 999999962 1 4778
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
++|+ +++|.||+|+|++|++++++++|++.+ ++|.||+++||+.|+|||+|||+...... ...+..|..+|+
T Consensus 217 ~~g~-i~~D~vi~a~G~~p~~~ll~~~gl~~~-~gi~Vd~~~~t~~~~IyA~GD~a~~~~~~------~~~~~~A~~qg~ 288 (367)
T 1xhc_A 217 NSGF-IEGKVKICAIGIVPNVDLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII------AGTAKAAMEQAR 288 (367)
T ss_dssp TTEE-EECSCEEEECCEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC------CCSHHHHHHHHH
T ss_pred CCCE-EEcCEEEECcCCCcCHHHHHhCCCCCC-CCEEECCCcccCCCCEEEeEeeeecCCCC------ccHHHHHHHHHH
Confidence 8887 999999999999999999999999887 56999999999999999999999754321 236788999999
Q ss_pred HHHHHHhcCCCCCCCcCCceee-ecccccCCCcceeeeeecCCcCcEEEEccCCCcEEEEEEECCEEEEEEeccCCHHHh
Q 011267 370 HCIKALLSAQTHTYDYLPYFYS-RVFEYEGSPRKVWWQFFGDNVGETIEIGNFDPKIATFWIDSGKLKGVLVESGSPEEF 448 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 448 (489)
.+|.||++. ..+|...+.+|+ ..++.. +..+|....+.... ..|.++++++++|+|+++ .|.....
T Consensus 289 ~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~~~~~----~~~~k~~~~~~~ilG~~~-~g~~~~~ 355 (367)
T 1xhc_A 289 VLADILKGE-PRRYNFKFRSTVFKFGKLQ-------IAIIGNTKGEGKWI----EDNTKVFYENGKIIGAVV-FNDIRKA 355 (367)
T ss_dssp HHHHHHTTC-CCCCCSSCCEEEEEETTEE-------EEEEECCSSCEEEE----ETTEEEEC-----CEEEE-ESCHHHH
T ss_pred HHHHHhcCC-CccCCCCCCceEEEECCce-------EEEECCCCCCCccc----ceEEEEEEECCEEEEEEE-ECChHHH
Confidence 999999963 456666555543 555433 67788765432211 346788888899999996 7888888
Q ss_pred HHHHHHHh
Q 011267 449 QLLPTLAR 456 (489)
Q Consensus 449 ~~~~~~~~ 456 (489)
..+++++.
T Consensus 356 ~~~~~~i~ 363 (367)
T 1xhc_A 356 TKLEKEIL 363 (367)
T ss_dssp HHHC----
T ss_pred HHHHHHHh
Confidence 88888773
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=400.95 Aligned_cols=402 Identities=20% Similarity=0.268 Sum_probs=311.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCC--CCCCCCCCccccCCCCCCCChhH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDK--KPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+||||||||+||++||.+|++.+. +.+|+|||+++..+|..+.+.. ++..... .+..+ .....++
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-----------~~~~~~~ 67 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHP-DADVTAYEMNDNISFLSCGIAL-YLGKEIKNNDPRGL-----------FYSSPEE 67 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEEESSSCCCBCGGGHHH-HHTTCBGGGCGGGG-----------BSCCHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCcccccchh-hhcCCcccCCHHHh-----------hhcCHHH
Confidence 589999999999999999999842 4589999999887775443321 1111000 01111 2345677
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCC-----CeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNS-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~-----g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (489)
+++.+++++.+++|..++.+.+++.+.+ +.++.||+||+|||++|. .|.++|.+.+++++++++.+++.+++..
T Consensus 68 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~ 146 (452)
T 2cdu_A 68 LSNLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPT-VPPIPGIDSSRVYLCKNYNDAKKLFEEA 146 (452)
T ss_dssp HHHTTCEEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTSTTEEECSSHHHHHHHHHHG
T ss_pred HHHcCCEEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcC-CCCCCCCCCCCEEEeCcHHHHHHHHHHh
Confidence 8889999999888999998888887754 567999999999999987 4556776667889999999999988888
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.+++.||++++ +++|+++... ++++
T Consensus 147 ~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~-~~~v~~i~~~-~~~v 224 (452)
T 2cdu_A 147 PKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVL-GSKVAAFEEV-DDEI 224 (452)
T ss_dssp GGCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEE-SSCEEEEEEE-TTEE
T ss_pred ccCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEc-CCeeEEEEcC-CCeE
Confidence 8899999999999999999999999999999999999998779999999999999999999999 9999999842 4555
Q ss_pred EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHH
Q 011267 285 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 363 (489)
Q Consensus 285 ~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~ 363 (489)
..+.+ +|+++++|.||+|+|++|++++++.. ++.+ +|+|.||+++||+.|+|||+|||+..+....|...++.++..
T Consensus 225 ~~v~~-~g~~i~~D~vv~a~G~~p~~~ll~~~-l~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~ 302 (452)
T 2cdu_A 225 ITKTL-DGKEIKSDIAILCIGFRPNTELLKGK-VAMLDNGAIITDEYMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN 302 (452)
T ss_dssp EEEET-TSCEEEESEEEECCCEEECCGGGTTT-SCBCTTSCBCCCTTSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred EEEEe-CCCEEECCEEEECcCCCCCHHHHHHh-hhcCCCCCEEECCCcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence 55555 77899999999999999999998887 7775 567999999999999999999999876555555445668899
Q ss_pred HHHHHHHHHHHHhcCCCCCC-CcCCceeeecccccCCCcceeeeeecCCcC-------cEEE-----Ecc------CCCc
Q 011267 364 ARQSAQHCIKALLSAQTHTY-DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE-----IGN------FDPK 424 (489)
Q Consensus 364 A~~~g~~~a~~l~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~~~-----~~~------~~~~ 424 (489)
|..+|+.+|.||++.. ..+ ...+++|+.+|+.. +..+|.... +... ... ....
T Consensus 303 A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (452)
T 2cdu_A 303 AVRQGRLVGLNLTEDK-VKDMGTQSSSGLKLYGRT-------YVSTGINTALAKANNLKVSEVIIADNYRPEFMLSTDEV 374 (452)
T ss_dssp HHHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTBSCCCEE
T ss_pred HHHHHHHHHHHhCCCC-CcCCCccceEEEEECCee-------eEeecCCHHHHHHcCCceEEEEEecCCccccCCCCceE
Confidence 9999999999998643 333 34678889888653 666776432 1110 111 1123
Q ss_pred EEEEEEE--CCEEEEEEeccC-CHHHh-HHHHHHHhcCCCCC-hhh--hcCCCcHHHHHHHH
Q 011267 425 IATFWID--SGKLKGVLVESG-SPEEF-QLLPTLARSQPFVD-KAK--LQQASSVEEALEIA 479 (489)
Q Consensus 425 ~~~~~~~--~~~~~g~~~~~~-~~~~~-~~~~~~~~~~~~~~-~~~--~~~~~~~~e~~~~~ 479 (489)
+.+++++ +++|+|+++++. ++.++ ..+..++..+.+++ ... +..|||+.|++..+
T Consensus 375 ~~k~~~~~~~~~ilG~~~~g~~~~~~~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~ 436 (452)
T 2cdu_A 375 LMSLVYDPKTRVILGGALSSMHDVSQSANVLSVCIQNKNTIDDLAMVDMLFQPQFDRPFNYL 436 (452)
T ss_dssp EEEEEECTTTCBEEEEEEEESSCCHHHHHHHHHHHHTTCBHHHHHHSCCCCCTTTCCSSCHH
T ss_pred EEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhhhhccCCCCCchHHHH
Confidence 5566664 599999998665 45554 45567788888876 332 57789988875544
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-48 Score=398.20 Aligned_cols=412 Identities=22% Similarity=0.315 Sum_probs=289.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++||||||||+||++||.+|++.+. +.+|+|||+++..+|.++.++. ++.........+...+ .......++
T Consensus 2 ~~~~VvIIGaG~aGl~aA~~L~~~~~-g~~Vtvie~~~~~~~~~~gl~~-~~~g~~~~~~~~~~~~-----~~~~~~~~~ 74 (472)
T 3iwa_A 2 SLKHVVVIGAVALGPKAACRFKRLDP-EAHVTMIDQASRISYGGCGIPY-YVSGEVSNIESLQATP-----YNVVRDPEF 74 (472)
T ss_dssp --CEEEEECCSSHHHHHHHHHHHHCT-TSEEEEECCC-------------------------------------------
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCcccccccccch-hhcCCCCchHHhcccc-----chhccCHHH
Confidence 35799999999999999999999853 5589999999999888776653 2211111111110000 001223344
Q ss_pred HH-HCCcEEEeCCcEEEEeCCCCEEEeCC---Ce--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHh
Q 011267 130 YK-EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 203 (489)
Q Consensus 130 ~~-~~~i~~~~~~~V~~id~~~~~v~~~~---g~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~ 203 (489)
+. +.+++++.+++|+.++++.+.+.+.+ |. ++.||+||+|||+.|. .|..+|.+.++++++++..+...+...
T Consensus 75 ~~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~ 153 (472)
T 3iwa_A 75 FRINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKAN-RPPVEGMDLAGVTPVTNLDEAEFVQHA 153 (472)
T ss_dssp ------CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCSCTTTTSBTEEECCSHHHHHHHHHH
T ss_pred HhhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcC-CCCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 44 58999999999999999999888764 65 7899999999999886 466677767788888888888888766
Q ss_pred hc--CCCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 204 LE--KAKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 204 ~~--~~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
+. .+++++|||+|++|+|+|..+.+. |.+|+++++.++++++.+++.+.+.+.+.+++.||++++ +++|++++..
T Consensus 154 l~~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~- 231 (472)
T 3iwa_A 154 ISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHT-GEKVVRLEGE- 231 (472)
T ss_dssp CCTTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEEC-SCCEEEEEES-
T ss_pred hhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEe-CCEEEEEEcc-
Confidence 53 478999999999999999999999 999999999999998678999999999999999999999 9999999853
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccc
Q 011267 281 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVE 359 (489)
Q Consensus 281 ~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~ 359 (489)
++.+. +.+.+|++++||.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||+..+....|......
T Consensus 232 ~~~v~-v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~ 310 (472)
T 3iwa_A 232 NGKVA-RVITDKRTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRMRTSDPDIFAGGDCVTIPNLVTGKPGFFP 310 (472)
T ss_dssp SSBEE-EEEESSCEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTCBCSSTTEEECGGGEEEEBTTTSSEECCC
T ss_pred CCeEE-EEEeCCCEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCcccCCCCEEEeccceecccccCCceeecc
Confidence 45553 77889999999999999999999999999999886 57899999999999999999999987766556555556
Q ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcCc-------E--EEEc---------cC
Q 011267 360 HVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG---------NF 421 (489)
Q Consensus 360 ~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~--~~~~---------~~ 421 (489)
++..|..+|+.+|.||++........+|++|...++.. +..+|....+ . .... +.
T Consensus 311 ~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~-------~a~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~ 383 (472)
T 3iwa_A 311 LGSMANRQGRVIGTNLADGDATFPGAVGSWAVKLFEGS-------ASGAGLTVEGALREGYDAVNVHVEQFDRAHFYPEK 383 (472)
T ss_dssp CTTHHHHHHHHHHHHHTTCCCCCCCBCCCEEEECSSCE-------EEEEECCHHHHHHTTCCEEEEEEEC----------
T ss_pred hHHHHHHHHHHHHHHhcCCCccCCCCCcceEEEECCce-------eEEEECCHHHHHHcCCceEEEEEecCCccCccCCC
Confidence 77789999999999999754332234677887777643 5666754321 1 1111 11
Q ss_pred CCcEEEEEEE--CCEEEEEEeccC---CHHHh-HHHHHHHhcCCCCC-hhh-hcCC-CcHHHHHHHH
Q 011267 422 DPKIATFWID--SGKLKGVLVESG---SPEEF-QLLPTLARSQPFVD-KAK-LQQA-SSVEEALEIA 479 (489)
Q Consensus 422 ~~~~~~~~~~--~~~~~g~~~~~~---~~~~~-~~~~~~~~~~~~~~-~~~-~~~~-~~~~e~~~~~ 479 (489)
...+.++.++ +++|+|+++++. .+.++ ..+..+|+.+.+++ ... .+.+ |++.|++...
T Consensus 384 ~~~~~kli~~~~~~~ilG~~~~g~~~~~~~~~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~~~~~~ 450 (472)
T 3iwa_A 384 TIMTLQLVVDRPTRRVLGIQGFSTLGDALTARINAVATMLASKPTVEDISNAEVVYSPPFASAMDIV 450 (472)
T ss_dssp -CEEEEEEEETTTCBEEEEEEEESCHHHHHHHHHHHHHHHTTCCBHHHHHTCCCC--------CCHH
T ss_pred ceEEEEEEEECCCCEEEEEEEECCCcccHHHHHHHHHHHHHcCCCHHHHhcccccCCCCCCCcccHH
Confidence 1235666664 599999998555 22444 44556678888775 333 3444 8888876543
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=391.98 Aligned_cols=396 Identities=19% Similarity=0.224 Sum_probs=301.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
+||||||||+||++||.+|++.+. +.+|+|||+++..+|.++.+.. ++.........+ .....+++.
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~g~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~ 69 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYP-QAEISLIDKQATVGYLSGGLSA-YFNHTINELHEA-----------RYITEEELR 69 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCCSSCCC----------------------------CCCCHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCcccCccchh-hhcCCCCCHHHh-----------hcCCHHHHH
Confidence 699999999999999999999853 5589999999998887655543 221111111111 134678889
Q ss_pred HCCcEEEeCCcEEEEeCCCCEEEeC---CCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCC
Q 011267 132 EKGIEMIYQDPVTSIDIEKQTLITN---SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAK 208 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~~~~~v~~~---~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~ 208 (489)
+.+++++.+++|+.+|++.+.+.+. ++.++.||+||+|||++|. .|..+|.+.+++++.+++.+.+.+++....++
T Consensus 70 ~~gi~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 148 (452)
T 3oc4_A 70 RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQF-STQIRGSQTEKLLKYKFLSGALAAVPLLENSQ 148 (452)
T ss_dssp HTTEEEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBC-CCCCBTTTCTTEEEGGGCC----CCHHHHTCS
T ss_pred HCCCEEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999888763 5668999999999999987 46667877788888887777777766667889
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVK 288 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~ 288 (489)
+++|||+|++|+|+|..+.++|.+|+++++.++++++.+++++.+.+.+.+++.||++++ ++.|++++.. ++++ .|.
T Consensus 149 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~-~~~v-~v~ 225 (452)
T 3oc4_A 149 TVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHF-EETVLGIEET-ANGI-VLE 225 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEE-TCCEEEEEEC-SSCE-EEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEe-CCEEEEEEcc-CCeE-EEE
Confidence 999999999999999999999999999999999998778999999999999999999999 9999999853 4455 677
Q ss_pred eCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHH
Q 011267 289 LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQS 367 (489)
Q Consensus 289 ~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~ 367 (489)
+++| +++||.||+|+|++|++++++.. ++.+ +|+|.||+++||+.|+|||+|||+..+....+.......+..|..+
T Consensus 226 ~~~g-~i~aD~Vv~A~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~~ 303 (452)
T 3oc4_A 226 TSEQ-EISCDSGIFALNLHPQLAYLDKK-IQRNLDQTIAVDAYLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVRT 303 (452)
T ss_dssp ESSC-EEEESEEEECSCCBCCCSSCCTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHHH
T ss_pred ECCC-EEEeCEEEECcCCCCChHHHHhh-hccCCCCCEEECcCccCCCCCEEEEEeeEEeccccCCceeecchHHHHHHH
Confidence 8777 89999999999999999988765 6664 5789999999999999999999998765544544445578889999
Q ss_pred HHHHHHHHhcCCCCCCC-cCCceeeecccccCCCcceeeeeecCCcCc-------E--EEEc-------cCCCcEEEEEE
Q 011267 368 AQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------T--IEIG-------NFDPKIATFWI 430 (489)
Q Consensus 368 g~~~a~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~--~~~~-------~~~~~~~~~~~ 430 (489)
|+.+|.||++.. ..+. ..+..++.+|+.. +..+|....+ . .... +....+.++.+
T Consensus 304 g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~kli~ 375 (452)
T 3oc4_A 304 GLVVANNLEEKT-HRFIGSLRTMGTKVGDYY-------LASTGLTETEGLFFPQTLASIIVRQPAPPLQHGTEILGKLIY 375 (452)
T ss_dssp HHHHTTSSSSCC-CCCCCCCCCEEEEETTEE-------EEEEECCSGGGGGSSSCEEEEEEEEECTTTTCSCEEEEEEEE
T ss_pred HHHHHHHhcCCC-ccCCCccccEEEEEcCee-------EEEecCCHHHHHHCCCceEEEEEecCCccCCCCCeEEEEEEE
Confidence 999999998643 3343 2445667777643 5667764321 1 1110 11234677776
Q ss_pred EC--CEEEEEEeccC-CHHHhH-HHHHHHhcCCCCC-hhh--hcCCCcHHH
Q 011267 431 DS--GKLKGVLVESG-SPEEFQ-LLPTLARSQPFVD-KAK--LQQASSVEE 474 (489)
Q Consensus 431 ~~--~~~~g~~~~~~-~~~~~~-~~~~~~~~~~~~~-~~~--~~~~~~~~e 474 (489)
+. ++|+|+++++. ++.++. .+..+++++.+++ ... +..+|+++|
T Consensus 376 ~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~P~~~~ 426 (452)
T 3oc4_A 376 DKVTQRVLGAQLCSKNNCLEKINTLALSIQTGQTLTDLLQKDYFYQPSLTN 426 (452)
T ss_dssp ETTTCBEEEEEEEESSCCTHHHHHHHHHHHTTCBHHHHHTCCCCCCTTTSC
T ss_pred ECCCCEEEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHHhhHhccCCCCCC
Confidence 64 99999998665 466644 5566788888876 332 467788877
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=378.20 Aligned_cols=368 Identities=21% Similarity=0.279 Sum_probs=289.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++||||||||+||++||.+|++.|+ +.+|+|+|+++..+|.++.+++.+.. ......+. ......+
T Consensus 3 ~~~dvvIIG~G~aGl~aA~~l~~~g~-~~~V~lie~~~g~~~~~~~l~~~~~~--~~~~~~~~----------~~~~~~~ 69 (384)
T 2v3a_A 3 ERAPLVIIGTGLAGYNLAREWRKLDG-ETPLLMITADDGRSYSKPMLSTGFSK--NKDADGLA----------MAEPGAM 69 (384)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHTTCS-SSCEEEECSSCCCEECGGGGGGTTTT--TCCHHHHE----------EECHHHH
T ss_pred CCCcEEEECChHHHHHHHHHHHhhCC-CCCEEEEECCCCCccCcccccHHHhC--CCCHHHhh----------ccCHHHH
Confidence 35899999999999999999999986 67899999998777887777653221 11111110 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+++.+++++.+++|..++.+.++|.+.+ .++.||+||+|||+.|. .|..+|...+++++.+++.+...+...+..+++
T Consensus 70 ~~~~~v~~~~~~~v~~i~~~~~~v~~~~-~~~~~d~lviAtG~~p~-~p~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 147 (384)
T 2v3a_A 70 AEQLNARILTHTRVTGIDPGHQRIWIGE-EEVRYRDLVLAWGAEPI-RVPVEGDAQDALYPINDLEDYARFRQAAAGKRR 147 (384)
T ss_dssp HHHTTCEEECSCCCCEEEGGGTEEEETT-EEEECSEEEECCCEEEC-CCCCBSTTTTCEEECSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCcEEEeCCEEEEEECCCCEEEECC-cEEECCEEEEeCCCCcC-CCCCCCcCcCCEEEECCHHHHHHHHHhhccCCe
Confidence 6788999999889999999888898865 46999999999999987 455677655778899999998888877778999
Q ss_pred EEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe
Q 011267 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL 289 (489)
Q Consensus 210 vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~ 289 (489)
++|||+|++|+|+|..|.+.|.+|+++++.++++++.+++.+.+.+.+.+++.||++++ +++|++++.++ +. ..+.+
T Consensus 148 v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~-~~~v~~i~~~~-~~-~~v~~ 224 (384)
T 2v3a_A 148 VLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHL-GPVLASLKKAG-EG-LEAHL 224 (384)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEE-SCCEEEEEEET-TE-EEEEE
T ss_pred EEEECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEe-CCEEEEEEecC-CE-EEEEE
Confidence 99999999999999999999999999999999998777999999999999999999999 99999998543 23 36788
Q ss_pred CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHH
Q 011267 290 EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQ 369 (489)
Q Consensus 290 ~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~ 369 (489)
.+|+++++|.||+|+|.+|++++++.+|++.++| |.||+++||+.|+|||+|||+..+... ..++..|..+|+
T Consensus 225 ~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~~g-i~vd~~~~t~~~~IyA~GD~~~~~~~~------~~~~~~a~~~g~ 297 (384)
T 2v3a_A 225 SDGEVIPCDLVVSAVGLRPRTELAFAAGLAVNRG-IVVDRSLRTSHANIYALGDCAEVDGLN------LLYVMPLMACAR 297 (384)
T ss_dssp TTSCEEEESEEEECSCEEECCHHHHHTTCCBSSS-EEECTTCBCSSTTEEECGGGEEETTBC------CCSHHHHHHHHH
T ss_pred CCCCEEECCEEEECcCCCcCHHHHHHCCCCCCCC-EEECCCCCCCCCCEEEeeeeeeECCCC------cchHHHHHHHHH
Confidence 8999999999999999999998999999998755 999999999999999999999754321 346778999999
Q ss_pred HHHHHHhcCCCCCCC--cCCce-eeecccccCCCcceeeeeecCCcC---cEEEEccCCCcEEEEEEE-CCEEEEEEecc
Q 011267 370 HCIKALLSAQTHTYD--YLPYF-YSRVFEYEGSPRKVWWQFFGDNVG---ETIEIGNFDPKIATFWID-SGKLKGVLVES 442 (489)
Q Consensus 370 ~~a~~l~~~~~~~~~--~~p~~-~~~~~~~~~~~~~~~~~~~G~~~~---~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~ 442 (489)
.+|+||++.. .+++ .+|++ |+. .+ .+++.|.... .....++ ...+.+++++ +++|+|++++.
T Consensus 298 ~~a~~i~g~~-~~~~~~~~p~~~~~~--~~-------~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~~i~G~~~~g 366 (384)
T 2v3a_A 298 ALAQTLAGNP-SQVAYGPMPVTVKTP--AC-------PLVVSPPPRGMDGQWLVEGS-GTDLKVLCRDTAGRVIGYALTG 366 (384)
T ss_dssp HHHHHHTTCC-CCCCCCCCCEEECCT--TS-------CEEEECCCTTCCCEEEEEEE-TTEEEEEEECTTSCEEEEEEEG
T ss_pred HHHHHhcCCC-ccCCCCCcceEEEEC--Ce-------eEEEecCCCCCCceEEEEec-CCcEEEEEEccCCEEEEEEEEC
Confidence 9999999643 4444 45653 221 11 1566665432 2233333 2347777775 79999999866
Q ss_pred CCHHHhHHHHH
Q 011267 443 GSPEEFQLLPT 453 (489)
Q Consensus 443 ~~~~~~~~~~~ 453 (489)
..+.++..+.+
T Consensus 367 ~~a~e~~~~~~ 377 (384)
T 2v3a_A 367 AAVNEKLALNK 377 (384)
T ss_dssp GGGGGHHHHHT
T ss_pred cchHHHHHHHH
Confidence 66777655544
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=385.43 Aligned_cols=399 Identities=21% Similarity=0.254 Sum_probs=301.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++||||||||+||++||.+|++.+. +.+|+|||+++..+|....++. ++... .....+ .....++
T Consensus 2 ~~~~VvIIGgG~aGl~aA~~L~~~~~-~~~V~vie~~~~~~~~~~~~p~-~~~~~-~~~~~~-----------~~~~~~~ 67 (449)
T 3kd9_A 2 SLKKVVIIGGGAAGMSAASRVKRLKP-EWDVKVFEATEWVSHAPCGIPY-VVEGL-STPDKL-----------MYYPPEV 67 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSSSCCC-------------------------------------CT
T ss_pred CcCcEEEECCcHHHHHHHHHHHHhCc-CCCEEEEECCCccccCCcCCcc-ccCCC-CCHHHh-----------hhcCHHH
Confidence 46899999999999999999999864 5689999999987765444432 11111 111111 1223344
Q ss_pred H-HHCCcEEEeCCcEEEEeCCCCEEEeCCC-eEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc--
Q 011267 130 Y-KEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE-- 205 (489)
Q Consensus 130 ~-~~~~i~~~~~~~V~~id~~~~~v~~~~g-~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~-- 205 (489)
+ ++.+++++.+++|+.++.+.+.+.+.++ .++.||+||+|||+.|. .|..+|.+.+++++.++..+...+.+...
T Consensus 68 ~~~~~gi~v~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~ 146 (449)
T 3kd9_A 68 FIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQ-VPAIEGVNLKGVFTADLPPDALAIREYMEKY 146 (449)
T ss_dssp HHHHTTCEEETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEEC-CCSCBTTTSTTEECSCSTHHHHHHHHHHSSS
T ss_pred HHHhcCcEEEecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHHhc
Confidence 4 6889999999999999998888988888 48999999999999986 56677877788888888888888777665
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.+++. |++++ ++.+++++.. +.+.
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~-~~~v~~i~~~--~~v~ 222 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRL-QEITMKIEGE--ERVE 222 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEE-SCCEEEEECS--SSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEe-CCeEEEEecc--CcEE
Confidence 678999999999999999999999999999999999998778999999999999999 99999 9999999843 2433
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHH
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHA 364 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A 364 (489)
.+ +.+++++++|.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||+..+....|...+...+..|
T Consensus 223 ~v-~~~g~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~~A 301 (449)
T 3kd9_A 223 KV-VTDAGEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAG 301 (449)
T ss_dssp EE-EETTEEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBCEEBTTTCSEECCCCHHHH
T ss_pred EE-EeCCCEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECCCCccCCCCEEEeeeeeeeccccCCceEEeccHHHH
Confidence 33 456778999999999999999999999999886 5679999999999999999999998766555654456688899
Q ss_pred HHHHHHHHHHHhcCCCCCCC-cCCceeeecccccCCCcceeeeeecCCcC-------cEE--E---Ecc------CCCcE
Q 011267 365 RQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETI--E---IGN------FDPKI 425 (489)
Q Consensus 365 ~~~g~~~a~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~~--~---~~~------~~~~~ 425 (489)
..+|+.+|.||++.. ..+. ..+++|+..++.. +..+|.... +.. . .+. ....+
T Consensus 302 ~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 373 (449)
T 3kd9_A 302 NKMGYVAGSNIAGKE-LHFPGVLGTAVTKFMDVE-------IGKTGLTEMEALKEGYDVRTAFIKASTRPHYYPGGREIW 373 (449)
T ss_dssp HHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCCEEE
T ss_pred HHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHCCCceEEEEEecCCccccCCCCceEE
Confidence 999999999999744 3443 3577888777654 667776532 111 1 110 01236
Q ss_pred EEEEEEC--CEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-hhh--hcCCCcHHHHH
Q 011267 426 ATFWIDS--GKLKGVLVESGSPEEFQLL-PTLARSQPFVD-KAK--LQQASSVEEAL 476 (489)
Q Consensus 426 ~~~~~~~--~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~--~~~~~~~~e~~ 476 (489)
.++.++. ++|+|+++++..+.++... ..+++.+.+++ ... +..+|+++|+.
T Consensus 374 ~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~~p~~~~~~ 430 (449)
T 3kd9_A 374 LKGVVDNETNRLLGVQVVGSDILPRIDTAAAMLMAGFTTKDAFFTDLAYAPPFAPVW 430 (449)
T ss_dssp EEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTCCCCCBTTTBCSS
T ss_pred EEEEEECCCCEEEEEEEEChHHHHHHHHHHHHHHcCCcHHHHhhcccccCCCCCCch
Confidence 6776664 8999999877777776554 55678888775 332 34556665543
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-47 Score=390.67 Aligned_cols=403 Identities=19% Similarity=0.267 Sum_probs=307.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
+||||||||+||++||.+|++.+. +.+|+|||+++..+|..+.+.. ++.........+ .....++++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~ 67 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKME 67 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHhCc-CCeEEEEECCCccCcccccchh-hhcCccCCHHHh-----------hcCCHHHHH
Confidence 489999999999999999999843 4589999999887765433321 111110011111 234567888
Q ss_pred HCCcEEEeCCcEEEEeCCCCEEEeCC---Ce--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc-
Q 011267 132 EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE- 205 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~~~~~v~~~~---g~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~- 205 (489)
+.+++++.+++|+.++.+.++|.+.+ |+ ++.||+||+|||++|. .|.++|.+.++++++++..++.++.+.+.
T Consensus 68 ~~gv~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~ 146 (447)
T 1nhp_A 68 SRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF-ELDIPGKDLDNIYLMRGRQWAIKLKQKTVD 146 (447)
T ss_dssp HTTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCSTTTTSBSEECCCHHHHHHHHHHHHTC
T ss_pred HCCCEEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcC-CCCCCCCCCCCeEEECCHHHHHHHHHHhhh
Confidence 89999988999999999888888754 64 4899999999999987 45667766678888888888888877666
Q ss_pred -CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 206 -KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 -~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
.+++++|||+|++|+|+|..|+++|.+|+++++.++++++.+++++.+.+.+.+++.||++++ ++.|++++.+ +++
T Consensus 147 ~~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~-~~~v~~i~~~--~~v 223 (447)
T 1nhp_A 147 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIAT-GETVERYEGD--GRV 223 (447)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEE-SCCEEEEECS--SBC
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEc-CCEEEEEEcc--CcE
Confidence 789999999999999999999999999999999999988778999999999999999999999 9999999843 444
Q ss_pred EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHH
Q 011267 285 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDH 363 (489)
Q Consensus 285 ~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~ 363 (489)
..+.+ +++++++|.||+|+|.+|++++++.. ++.+ +|+|.||+++||+.|+|||+|||+..+....|...+..++..
T Consensus 224 ~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~~-~~~~~~G~i~Vd~~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~ 301 (447)
T 1nhp_A 224 QKVVT-DKNAYDADLVVVAVGVRPNTAWLKGT-LELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATN 301 (447)
T ss_dssp CEEEE-SSCEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred EEEEE-CCCEEECCEEEECcCCCCChHHHHhh-hhhcCCCcEEECccccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence 34555 45689999999999999999998887 7765 567999999999999999999999866544454444568889
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-cCCceeeecccccCCCcceeeeeecCCcC-------cE--E-E--Ecc------CCCc
Q 011267 364 ARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ET--I-E--IGN------FDPK 424 (489)
Q Consensus 364 A~~~g~~~a~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~--~-~--~~~------~~~~ 424 (489)
|..+|+.+|.||++.. .++. ..+++|+..++.. +..+|.... +. . . ... ....
T Consensus 302 A~~qg~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (447)
T 1nhp_A 302 ARKQGRFAVKNLEEPV-KPFPGVQGSSGLAVFDYK-------FASTGINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKA 373 (447)
T ss_dssp HHHHHHHHHHTSSSCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHHTCCCEEEEEEEESSCTTCTTCCEE
T ss_pred HHHHHHHHHHhhcCCC-CCCCCccccEEEEECCee-------eEEecCCHHHHHHcCCceEEEEEEcCCccccCCCCceE
Confidence 9999999999998643 3343 4578888877654 556665432 01 1 1 111 0113
Q ss_pred EEEEEEE--CCEEEEEEeccCC-HHH-hHHHHHHHhcCCCCC-hhh--hcCCCcHHHHHHHHHc
Q 011267 425 IATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD-KAK--LQQASSVEEALEIARA 481 (489)
Q Consensus 425 ~~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~e~~~~~~~ 481 (489)
+.+++++ +++|+|+++++.. +.+ +..+..+|+++.+++ ... +..|||++|++..+..
T Consensus 374 ~~k~~~~~~~~~ilG~~~~g~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~~ 437 (447)
T 1nhp_A 374 WFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYADFFFQPAFDKPWNIINT 437 (447)
T ss_dssp EEEEEECTTTCBEEEEEEEESSCCTTHHHHHHHHHHTTCBHHHHHTCCCCCCTTTCCSSCHHHH
T ss_pred EEEEEEECCCCEEEEEEEEcCccHHHHHHHHHHHHHcCCCHHHHhhcceecCCCCCCcccHHHH
Confidence 5566665 5999999986665 544 445667889998886 333 4678999887655443
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=387.38 Aligned_cols=403 Identities=20% Similarity=0.307 Sum_probs=308.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
++||||||||+||++||.+|++.+. +.+|+|||+++..+|.++.++. ++.........+ .....+++
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~-g~~V~lie~~~~~~~~~~~~~~-~~~~~~~~~~~l-----------~~~~~~~~ 102 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDE-NANVVTLEKGEIYSYAQCGLPY-VISGAIASTEKL-----------IARNVKTF 102 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCT-TCEEEEECSSSCCSBCGGGHHH-HHTTSSSCGGGG-----------BSSCHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhhCc-CCcEEEEECCCCCCCCCCCcch-hhcCCcCCHHHh-----------hhcCHHHH
Confidence 4699999999999999999999743 4589999999888777654432 221111111111 12345566
Q ss_pred -HHCCcEEEeCCcEEEEeCCCCEEEeCC---Ce--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh
Q 011267 131 -KEKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (489)
Q Consensus 131 -~~~~i~~~~~~~V~~id~~~~~v~~~~---g~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (489)
++.+++++.+++|+.++.+.+.+.+.+ |+ ++.||+||+|||+.|. .|.++|.+.++++++++.++..++.+.+
T Consensus 103 ~~~~gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~v~~~~~~~~~~~l~~~~ 181 (480)
T 3cgb_A 103 RDKYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPV-MPEWEGRDLQGVHLLKTIPDAERILKTL 181 (480)
T ss_dssp HHTTCCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCBTTTSBTEECCSSHHHHHHHHHHH
T ss_pred HhhcCCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCccc-CCCCCCccCCCEEEeCCHHHHHHHHHHh
Confidence 445999999889999999888887753 65 7999999999999986 4556776667888888888888877766
Q ss_pred c--CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 205 E--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 205 ~--~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
. .+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||++++ ++.|+++..+ +
T Consensus 182 ~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~i~~-~~~v~~i~~~--~ 257 (480)
T 3cgb_A 182 ETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGT-IYDGDMAEYIYKEADKHHIEILT-NENVKAFKGN--E 257 (480)
T ss_dssp HSSCCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTS-SSCHHHHHHHHHHHHHTTCEEEC-SCCEEEEEES--S
T ss_pred hhcCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhh-cCCHHHHHHHHHHHHHcCcEEEc-CCEEEEEEcC--C
Confidence 5 789999999999999999999999999999999998888 58999999999999999999999 9999999853 4
Q ss_pred cEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccH
Q 011267 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 361 (489)
Q Consensus 283 ~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~ 361 (489)
++..+.+++ .+++||.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||+..+....|...++.++
T Consensus 258 ~v~~v~~~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~ 336 (480)
T 3cgb_A 258 RVEAVETDK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYMQTNVQDVYAAGDCATHYHVIKEIHDHIPIG 336 (480)
T ss_dssp BEEEEEETT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCTTSBCSSTTEEECGGGBCEEBTTTCSEECCCCH
T ss_pred cEEEEEECC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECCCccCCCCCEEEeeeEEEecCCCCCcceecchH
Confidence 555566654 58999999999999999999999999876 5789999999999999999999998765544554445678
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC-cCCceeeecccccCCCcceeeeeecCCcC-------c--E-EEEccC--------C
Q 011267 362 DHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------E--T-IEIGNF--------D 422 (489)
Q Consensus 362 ~~A~~~g~~~a~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~--~-~~~~~~--------~ 422 (489)
..|..+|+.+|.||++. ...+. ..+++|+.+++.. +..+|.... + . ...... .
T Consensus 337 ~~A~~qg~~aa~~i~g~-~~~~~~~~~~~~~~~~~~~-------~~~vG~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~ 408 (480)
T 3cgb_A 337 TTANKQGRLAGLNMLDK-RRAFKGTLGTGIIKFMNLT-------LARTGLNEKEAKGLHIPYKTVKVDSTNMAGYYPNAK 408 (480)
T ss_dssp HHHHHHHHHHHHHHTTC-CCCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCEEEEEEEEESSCTTSTTCC
T ss_pred HHHHHHHHHHHHHhcCC-CccCCCccceeEEEECCcE-------EEEeCCCHHHHHHcCCceEEEEEecCCcccccCCCc
Confidence 89999999999999863 34443 3456777777654 666775432 1 1 111110 1
Q ss_pred CcEEEEEEE--CCEEEEEEeccCC-HHH-hHHHHHHHhcCCCCC-hhh--hcCCCcHHHHHHHHH
Q 011267 423 PKIATFWID--SGKLKGVLVESGS-PEE-FQLLPTLARSQPFVD-KAK--LQQASSVEEALEIAR 480 (489)
Q Consensus 423 ~~~~~~~~~--~~~~~g~~~~~~~-~~~-~~~~~~~~~~~~~~~-~~~--~~~~~~~~e~~~~~~ 480 (489)
..+.+++++ +++|+|++++... +.+ +..+..+|+++.+++ ... +..+||++|++..+.
T Consensus 409 ~~~~kl~~~~~~~~ilG~~~vg~~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~~Pt~~e~~~~~~ 473 (480)
T 3cgb_A 409 PLYLKLLYRSDTKQLLGGQVIGEEGVDKRIDVIAMALFNKMSIHDLEDVDLSYAPPYNSVWDPIQ 473 (480)
T ss_dssp EEEEEEEEETTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBGGGGGGCCCCCCTTTCCSSCHHH
T ss_pred eEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHHHHhhcccccCCCCCCchhHHH
Confidence 125666664 6999999986666 555 445677789998886 333 356899988665543
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-46 Score=392.10 Aligned_cols=386 Identities=19% Similarity=0.336 Sum_probs=301.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
+||||||||+||++||.+|++.+. +.+|+|||+++..+|.++.++. ++.........+ .....+++.
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~-~~~V~lie~~~~~~~~~~~l~~-~~~~~~~~~~~~-----------~~~~~~~~~ 68 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSE-TAEIIMFERGEYVSFANCGLPY-HISGEIAQRSAL-----------VLQTPESFK 68 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTSSSCCGGGG-----------BCCCHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHhhCc-CCCEEEEECCCCccccccCchH-HhcCCcCChHHh-----------hccCHHHHH
Confidence 689999999999999999999864 6699999999998888766553 221111111100 133445555
Q ss_pred -HCCcEEEeCCcEEEEeCCCCEEEeCC---Ce--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh-
Q 011267 132 -EKGIEMIYQDPVTSIDIEKQTLITNS---GK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL- 204 (489)
Q Consensus 132 -~~~i~~~~~~~V~~id~~~~~v~~~~---g~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~- 204 (489)
+.+++++++++|+.+|++.+.+.+.+ |. ++.||+||+|||+.|. .|..+|.+.++++++++..+++.+.+.+
T Consensus 69 ~~~~i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~-~p~ipG~~~~~v~~~~~~~~~~~l~~~~~ 147 (565)
T 3ntd_A 69 ARFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPI-VPPIPGVDNPLTHSLRNIPDMDRILQTIQ 147 (565)
T ss_dssp HHHCCEEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTCCSTTEECCSSHHHHHHHHHHHH
T ss_pred HhcCcEEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCC-CCCCCCCCCCCEEEeCCHHHHHHHHHHHh
Confidence 48999999999999999998887753 43 7899999999999987 4666787778888888888887776544
Q ss_pred -cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC----
Q 011267 205 -EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG---- 279 (489)
Q Consensus 205 -~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~---- 279 (489)
..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||++++ ++.|+++...
T Consensus 148 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~~~~~ 225 (565)
T 3ntd_A 148 MNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT-PVDREMAGFAHQAIRDQGVDLRL-GTALSEVSYQVQTH 225 (565)
T ss_dssp HTTCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT-TSCHHHHHHHHHHHHHTTCEEEE-TCCEEEEEEECCCC
T ss_pred hCCCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch-hcCHHHHHHHHHHHHHCCCEEEe-CCeEEEEecccccc
Confidence 3578999999999999999999999999999999999998 58999999999999999999999 9999999852
Q ss_pred --------------CCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccc
Q 011267 280 --------------SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDV 344 (489)
Q Consensus 280 --------------~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~ 344 (489)
+++.+ .+.+.+|++++||.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~ 304 (565)
T 3ntd_A 226 VASDAAGEDTAHQHIKGHL-SLTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMMQTSDPAIYAVGDA 304 (565)
T ss_dssp CCCGGGTCCCTTCCTTCEE-EEEETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTCBCSSTTEEECGGG
T ss_pred ccccccccccccccCCCcE-EEEEcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCcccCCCCEEEeeee
Confidence 23444 467788999999999999999999999999999876 57899999999999999999999
Q ss_pred cccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcC-CceeeecccccCCCcceeeeeecCCcCc---------
Q 011267 345 AAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL-PYFYSRVFEYEGSPRKVWWQFFGDNVGE--------- 414 (489)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~G~~~~~--------- 414 (489)
+..+....|......++..|..+|+.+|.||++.. ..|... +++|+.+|+.. +..+|....+
T Consensus 305 ~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~-~~~~~~~~~~~~~~~~~~-------~~~vG~~e~~a~~~g~~~~ 376 (565)
T 3ntd_A 305 VEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE-ERYQGTQGTAICKVFDLA-------VGATGKNEKQLKQAGIAFE 376 (565)
T ss_dssp BCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC-CCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCE
T ss_pred EeeccccCCceeecccHHHHHHHHHHHHHHhcCCC-ccCCCcccceEEEEcCcE-------EEEecCCHHHHHHcCCCeE
Confidence 98776666665556788899999999999999744 446554 45556677643 5667765321
Q ss_pred EEEEc---c--C----CCcEEEEEEE--CCEEEEEEeccCCH-HHhH-HHHHHHhcCCCCC
Q 011267 415 TIEIG---N--F----DPKIATFWID--SGKLKGVLVESGSP-EEFQ-LLPTLARSQPFVD 462 (489)
Q Consensus 415 ~~~~~---~--~----~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~-~~~~~~~~~~~~~ 462 (489)
..... . . ...+.++.++ +++|+|+++++.++ .++. .+..+|+.+.+++
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~k~v~~~~~~~ilG~~~~g~~a~~e~i~~~~~ai~~~~~~~ 437 (565)
T 3ntd_A 377 KVYVHTASHASYYPGAEVVSFKLLFDPVKGTIFGAQAVGKDGIDKRIDVMAVAQRAGMTVE 437 (565)
T ss_dssp EEEEEEESSCTTSTTCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBHH
T ss_pred EEEEecCcccCcCCCCceEEEEEEEECCCCEEEEEEEECCccHHHHHHHHHHHHHcCCCHH
Confidence 11111 0 1 1235677663 59999999877776 5544 4556678887765
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=376.08 Aligned_cols=389 Identities=20% Similarity=0.306 Sum_probs=298.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
.++++||||||||+||++||.+|++.+. +.+|+|||+++..+|.++.++. ++.........+ ......
T Consensus 33 ~~~~~~VvIIGgG~AGl~aA~~L~~~~~-g~~V~vie~~~~~~~~~~~lp~-~~~g~~~~~~~~----------~~~~~~ 100 (588)
T 3ics_A 33 RWGSRKIVVVGGVAGGASVAARLRRLSE-EDEIIMVERGEYISFANCGLPY-YIGGVITERQKL----------LVQTVE 100 (588)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHHCS-SSEEEEECSSSCSSBCGGGHHH-HHTTSSCCGGGG----------BSSCHH
T ss_pred cccCCCEEEECCcHHHHHHHHHHHhhCc-CCCEEEEECCCCccccCCCCch-hhcCcCCChHHh----------hccCHH
Confidence 4567899999999999999999999853 5689999999998888765543 221111101000 012234
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeC---CCe--EEeeCcEEecCCCCCCCCCCCCCC-CCCceEeecCHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTASRFPEKIGG-YLPGVHYIRDVADADALI 201 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~---~g~--~i~yd~lvlATG~~~~~~p~~~g~-~~~gv~~~~~~~~~~~~~ 201 (489)
.+.++.+++++++++|+.++++.+.+.+. +|. ++.||+||+|||+.|. .|.++|. +.+++++.++..+...+.
T Consensus 101 ~~~~~~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~~~~~v~~~~~~~~~~~~~ 179 (588)
T 3ics_A 101 RMSKRFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPI-VPSIPGIEEAKALFTLRNVPDTDRIK 179 (588)
T ss_dssp HHHHHTTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC-CCCCTTTTTCTTEEECSSHHHHHHHH
T ss_pred HHHHhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCC-CCCCCCcccCCCeEEeCCHHHHHHHH
Confidence 45568899999999999999999888774 455 7899999999999886 4566776 677888999988888776
Q ss_pred Hhh--cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 202 SSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 202 ~~~--~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
..+ ..+++++|||+|++|+|+|..|.+.|.+|+++++.+++++. +++++.+.+.+.+++.||++++ ++.|++++..
T Consensus 180 ~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~GV~i~~-~~~v~~i~~~ 257 (588)
T 3ics_A 180 AYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP-IDYEMAAYVHEHMKNHDVELVF-EDGVDALEEN 257 (588)
T ss_dssp HHHHHHCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEEC-SCCEEEEEGG
T ss_pred HHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc-CCHHHHHHHHHHHHHcCCEEEE-CCeEEEEecC
Confidence 654 36899999999999999999999999999999999999986 8999999999999999999999 9999999853
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCccccc
Q 011267 280 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358 (489)
Q Consensus 280 ~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~ 358 (489)
+ + .|.+.+|+++++|.||+|+|++|++++++.+|++.+ +|+|.||+++||+.|+|||+|||+..+....|.....
T Consensus 258 ~-~---~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~~t~~~~IyA~GD~~~~~~~~~g~~~~~ 333 (588)
T 3ics_A 258 G-A---VVRLKSGSVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKFQTSDPHIYAIGDAIEVKDFVTETETMI 333 (588)
T ss_dssp G-T---EEEETTSCEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTSBCSSTTEEECGGGBCEEBTTTCCEECC
T ss_pred C-C---EEEECCCCEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECCccccCCCCEEEeeeeeecccccCCccccc
Confidence 2 2 477889999999999999999999999999999875 5789999999999999999999998766555554446
Q ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCC-cCCceeeecccccCCCcceeeeeecCCcCc---------EEE---EccC----
Q 011267 359 EHVDHARQSAQHCIKALLSAQTHTYD-YLPYFYSRVFEYEGSPRKVWWQFFGDNVGE---------TIE---IGNF---- 421 (489)
Q Consensus 359 ~~~~~A~~~g~~~a~~l~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~---------~~~---~~~~---- 421 (489)
..+..|..+|+.+|.||++.....+. .+|..+...++.. +..+|....+ ... ....
T Consensus 334 ~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~~~~~~~~~~-------~a~vGlte~~a~~~g~~~~~~~~~~~~~~~~~~ 406 (588)
T 3ics_A 334 PLAWPANRQGRMLADIIHGHTDSLYKGTLGTSVAKVFDLT-------VATTGLNEKILKRLNIPYEVVHVQANSHAGYYP 406 (588)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCSSCCCCBCCCEEEEETTEE-------EEEEECCHHHHHHTTCCCEEEEEEEESSCTTST
T ss_pred ccHHHHHHHHHHHHHHhcCCCccccCCcccceEEEECCeE-------EEEecCCHHHHHHcCCCeEEEEEecCCccccCC
Confidence 67888999999999999972333343 3555554445432 4556654311 111 1110
Q ss_pred --CCcEEEEEEE--CCEEEEEEeccCC-HHHhH-HHHHHHhcCCCCC
Q 011267 422 --DPKIATFWID--SGKLKGVLVESGS-PEEFQ-LLPTLARSQPFVD 462 (489)
Q Consensus 422 --~~~~~~~~~~--~~~~~g~~~~~~~-~~~~~-~~~~~~~~~~~~~ 462 (489)
...+.++.++ +++|+|+++++.+ +.++. .+..+++.+.+++
T Consensus 407 ~~~~~~~k~i~~~~~~~ilG~~~~g~~~~~e~i~~~~~ai~~~~t~~ 453 (588)
T 3ics_A 407 NATPVLIKLIFNKDSGKIYGAQTLGRDGVDKRMDVIATAIKANLTVL 453 (588)
T ss_dssp TCCEEEEEEEECTTTCBEEEEEEEESSSHHHHHHHHHHHHHTTCBTT
T ss_pred CCceEEEEEEEECCCCeEEEEEEEcCCcHHHHHHHHHHHHHcCCCHH
Confidence 1236666664 5999999986543 66554 4556678888876
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=355.79 Aligned_cols=402 Identities=20% Similarity=0.246 Sum_probs=285.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC----CCCCccccCC-----------CCCCCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE----RPALTKGYLF-----------PLDKKPARLP 112 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~----~~~l~~~~~~-----------~~~~~~~~~~ 112 (489)
.+.++||||||||+||++||.+|++.|. +|+|||+++..... .+.-++.++. ........+.
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~ 116 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMT 116 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHH
Confidence 3456899999999999999999999976 79999998743211 0000000000 0000000000
Q ss_pred C----CccccCCCCCCCCh---hHH-----HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCC
Q 011267 113 G----FHTCVGSGGERQTP---EWY-----KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEK 180 (489)
Q Consensus 113 ~----~~~~~~~~~~~~~~---~~~-----~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~ 180 (489)
. ..... ........ .++ ++.++++++..++..++. +++.+. +.++.||+||+|||+.|. .|.+
T Consensus 117 ~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~v~~~-g~~~~~d~lViATGs~p~-~p~i 191 (523)
T 1mo9_A 117 EKVVGIKEVV-DLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HTVEAA-GKVFKAKNLILAVGAGPG-TLDV 191 (523)
T ss_dssp TCCCCHHHHH-HHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TEEEET-TEEEEBSCEEECCCEECC-CCCS
T ss_pred hhhhhHHHHH-HHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CEEEEC-CEEEEeCEEEECCCCCCC-CCCC
Confidence 0 00000 00000012 456 778999985568888886 567776 778999999999999987 4556
Q ss_pred CCCCCCceEeecCHHHHHHHH-HhhcCC-CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHH
Q 011267 181 IGGYLPGVHYIRDVADADALI-SSLEKA-KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (489)
Q Consensus 181 ~g~~~~gv~~~~~~~~~~~~~-~~~~~~-~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~ 258 (489)
+|...+++++. +.+. ...... ++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++++.+.+.+.
T Consensus 192 ~G~~~~~v~~~------~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~ 264 (523)
T 1mo9_A 192 PGVNAKGVFDH------ATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLI-KDNETRAYVLDR 264 (523)
T ss_dssp TTTTSBTEEEH------HHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTC-CSHHHHHHHHHH
T ss_pred CCcccCcEeeH------HHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccccc-ccHHHHHHHHHH
Confidence 66544455432 2333 222234 99999999999999999999999999999999999985 899999999999
Q ss_pred HHhcCcEEEEcCceEEEEEeCCCCcE--EEEEeCCCc-EEEcCEEEEccCCCCCCc-hhhhcCCeec-CCcEEeCCCCCC
Q 011267 259 YQQNGVKFVKVGASIKNLEAGSDGRV--AAVKLEDGS-TIDADTIVIGIGAKPTVS-PFERVGLNSS-VGGIQVDGQFRT 333 (489)
Q Consensus 259 l~~~Gv~~~~~~~~v~~i~~~~~~~v--~~v~~~~g~-~i~aD~vi~a~G~~p~~~-~~~~~gl~~~-~g~i~vd~~~~t 333 (489)
+++.||++++ +++|+++...+++++ ..|++++|+ +++||.||+|+|++|+++ +++.+|++.+ +|+|.||+++||
T Consensus 265 l~~~GV~i~~-~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~~t 343 (523)
T 1mo9_A 265 MKEQGMEIIS-GSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYLQT 343 (523)
T ss_dssp HHHTTCEEES-SCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTSBC
T ss_pred HHhCCcEEEE-CCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCCcc
Confidence 9999999999 999999986545543 357888887 899999999999999998 7999999986 567999999999
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC-CCCcCCceeeecccccCCCcceeeeeecCCc
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH-TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 412 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~ 412 (489)
+.|+|||+|||+..+. .+..|..+|+.+|.||++.... .+..+|+++..... +..+|...
T Consensus 344 ~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~~~~~~~~---------~a~vG~~e 404 (523)
T 1mo9_A 344 SVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGEKISYTPKNYPDFLHTHYE---------VSFLGMGE 404 (523)
T ss_dssp SSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTCCCCCCCCSCCEEEESSSE---------EEEEECCH
T ss_pred CCCCEEEEeecCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCeEEECCCc---------eEEEeCCH
Confidence 9999999999997542 3456999999999999964321 24557765432111 34455432
Q ss_pred C-------cEEE----Ec------------------------cCCCcEEEEEEE--CCEEEEEEeccCCHHHh-HHHHHH
Q 011267 413 G-------ETIE----IG------------------------NFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTL 454 (489)
Q Consensus 413 ~-------~~~~----~~------------------------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~ 454 (489)
. +... .. .....+.+++++ +++|+|+++++..+.++ ..+..+
T Consensus 405 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~a 484 (523)
T 1mo9_A 405 EEARAAGHEIVTIKMPPDTENGLNVALPASDRTMLYAFGKGTAHMSGFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVL 484 (523)
T ss_dssp HHHHHTTCCEEEEEESCCSTTTTCSSCSCCTTTHHHHHSTTTGGGGCEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHH
T ss_pred HHHHhCCCCEEEEEEecccccccccccccccccccceEEeecCCCCEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHH
Confidence 1 1111 00 111346777765 59999999866666654 555677
Q ss_pred HhcCCCCC-h-hh--hcCCCcHHHHHHHHHccCC
Q 011267 455 ARSQPFVD-K-AK--LQQASSVEEALEIARAALP 484 (489)
Q Consensus 455 ~~~~~~~~-~-~~--~~~~~~~~e~~~~~~~~~~ 484 (489)
|+++.+++ . .. ++.|||+.|++..+++..-
T Consensus 485 i~~~~t~~~l~~~~~~~~~Pt~~e~~~~~~~~~~ 518 (523)
T 1mo9_A 485 IKQGLTVDELGDMDELFLNPTHFIQLSRLRAGSK 518 (523)
T ss_dssp HHTTCBHHHHHTSCCCSSCSCCHHHHHHHHTTCS
T ss_pred HHCCCCHHHHHhCCcceECCCHHHHHHHHHHhhH
Confidence 89998886 2 33 6889999999999887754
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-41 Score=348.55 Aligned_cols=397 Identities=16% Similarity=0.215 Sum_probs=280.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---------------------CCCCcc--ccCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---------------------RPALTK--GYLFPLDK 106 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---------------------~~~l~~--~~~~~~~~ 106 (489)
.++||||||||+||++||.+|++.|. +|+|||++. .... .+.... + + +...
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g-~-~~~~ 76 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVEQGA---QVTLIERGT-IGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGG-I-AATV 76 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSS-TTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTT-S-CCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCC-CCccccCCCccchHHHHHHHHHHHHHhhhhhcCC-c-cCCC
Confidence 46899999999999999999999876 799999983 1100 000000 0 0 0000
Q ss_pred CCCCCCCCccccCC--CCC--CCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCC
Q 011267 107 KPARLPGFHTCVGS--GGE--RQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPE 179 (489)
Q Consensus 107 ~~~~~~~~~~~~~~--~~~--~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~ 179 (489)
....+..+...... ... ....+++++. +++++.+ ++..++....++.+.+| .++.||+||+|||++|. .|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~-~p~ 154 (467)
T 1zk7_A 77 PTIDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHG-EARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPA-VPP 154 (467)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEE-EEEEEETTEEEEEETTSSEEEEECSEEEECCCEEEC-CCC
T ss_pred CccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEE-EEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCC-CCC
Confidence 00000000000000 000 0123455666 9999986 68888887777888888 78999999999999987 455
Q ss_pred CCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHH
Q 011267 180 KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY 259 (489)
Q Consensus 180 ~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l 259 (489)
++|.+...+ + + .+.+.+....+++++|||+|++|+|+|..|.++|.+|+++++.+++++ +++.+.+.+.+.+
T Consensus 155 i~G~~~~~~--~-~---~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~--~~~~~~~~l~~~l 226 (467)
T 1zk7_A 155 IPGLKESPY--W-T---STEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFR--EDPAIGEAVTAAF 226 (467)
T ss_dssp CTTTTTSCC--B-C---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT--SCHHHHHHHHHHH
T ss_pred CCCCCcCce--e-c---HHHHhcccccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCC--CCHHHHHHHHHHH
Confidence 555433222 2 2 333434334589999999999999999999999999999999999988 7999999999999
Q ss_pred HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCC
Q 011267 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMP 336 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~ 336 (489)
++.||++++ +++|+++..+ +....+.++ ++++++|.||+|+|.+|++++ ++.+|++.+ +|.|.||+++||+.|
T Consensus 227 ~~~Gv~i~~-~~~v~~i~~~--~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~~ 302 (467)
T 1zk7_A 227 RAEGIEVLE-HTQASQVAHM--DGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGMRTSNP 302 (467)
T ss_dssp HHTTCEEET-TCCEEEEEEE--TTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSST
T ss_pred HhCCCEEEc-CCEEEEEEEe--CCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCcccCCC
Confidence 999999999 9999999853 233356666 458999999999999999875 678899886 466999999999999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
+|||+|||+..+. .+..|..+|+.+|.||++... ..+..+|++ ..++.. +..+|....
T Consensus 303 ~iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~--~~~~~~-------~a~vG~~~~~a 363 (467)
T 1zk7_A 303 NIYAAGDCTDQPQ----------FVYVAAAAGTRAAINMTGGDAALDLTAMPAV--VFTDPQ-------VATVGYSEAEA 363 (467)
T ss_dssp TEEECSTTBSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCCTTCEEE--ECSSSE-------EEEEECCHHHH
T ss_pred CEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCCCcccCCCCCCEE--EecCCc-------eEEEecCHHHH
Confidence 9999999998543 456799999999999987432 233445543 222211 445664321
Q ss_pred -----cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC-h-hhhcCCCc
Q 011267 414 -----ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K-AKLQQASS 471 (489)
Q Consensus 414 -----~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~ 471 (489)
+... . ......+.+++++ +++|+|++++...+.++. .+..+|.++.+++ . ..++.|||
T Consensus 364 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l~~~~~~~pt 443 (467)
T 1zk7_A 364 HHDGIETDSRTLTLDNVPRALANFDTRGFIKLVIEEGSHRLIGVQAVAPEAGELIQTAALAIRNRMTVQELADQLFPYLT 443 (467)
T ss_dssp HHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTS
T ss_pred HhcCCCeEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCC
Confidence 1111 0 0112457788776 699999998666666644 5677788888876 2 44588999
Q ss_pred HHHHHHHHHccCCc
Q 011267 472 VEEALEIARAALPV 485 (489)
Q Consensus 472 ~~e~~~~~~~~~~~ 485 (489)
+.|+++.|++++..
T Consensus 444 ~~e~~~~~~~~~~~ 457 (467)
T 1zk7_A 444 MVEGLKLAAQTFNK 457 (467)
T ss_dssp TTHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999887653
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=360.99 Aligned_cols=400 Identities=18% Similarity=0.198 Sum_probs=283.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCC---C-CCCccccCCC-------CCCCCCCCC----
Q 011267 51 NREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYE---R-PALTKGYLFP-------LDKKPARLP---- 112 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~~-------~~~~~~~~~---- 112 (489)
++||||||||+||++||.+|++. |. +|+|||+++ .+.. . +.-++.++.. .......++
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~---~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~ 77 (499)
T 1xdi_A 2 VTRIVILGGGPAGYEAALVAATSHPETT---QVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFD 77 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHCTTTE---EEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC----
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCcC---EEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccC
Confidence 47999999999999999999998 65 799999986 2110 0 0000000000 000000000
Q ss_pred ----CCccccCC------CCCCCChhHHHHCCcEEEeCCcEEEEeC------CCCEEEeCCCe--EEeeCcEEecCCCCC
Q 011267 113 ----GFHTCVGS------GGERQTPEWYKEKGIEMIYQDPVTSIDI------EKQTLITNSGK--LLKYGSLIVATGCTA 174 (489)
Q Consensus 113 ----~~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~V~~id~------~~~~v~~~~g~--~i~yd~lvlATG~~~ 174 (489)
.+...... .......+++++.+++++.+ ++..++. ....+.+.+|. ++.||+||+|||+.|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p 156 (499)
T 1xdi_A 78 DAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAG-RGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP 156 (499)
T ss_dssp --CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence 00000000 00001235567789999987 5777877 23355556676 799999999999998
Q ss_pred CCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHH
Q 011267 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (489)
Q Consensus 175 ~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~ 254 (489)
. .|..+|.+..++.+..+.. .....+++++|||+|++|+|+|..+.++|.+|+++++.+++++. +++++.+.
T Consensus 157 ~-~p~i~g~~~~~v~~~~~~~------~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~ 228 (499)
T 1xdi_A 157 R-ILPSAQPDGERILTWRQLY------DLDALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPY-EDADAALV 228 (499)
T ss_dssp C-CCGGGCCCSSSEEEGGGGG------GCSSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCC-SSHHHHHH
T ss_pred C-CCCCCCCCcCcEEehhHhh------hhhccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccc-cCHHHHHH
Confidence 6 4555665444555443222 22235789999999999999999999999999999999999985 89999999
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQF 331 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~ 331 (489)
+.+.+++.||++++ ++.|++++.++ +.+ .+.+.+|+++++|.||+|+|++|++++ ++++|++.+ +|+|.||+++
T Consensus 229 l~~~l~~~GV~i~~-~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~ 305 (499)
T 1xdi_A 229 LEESFAERGVRLFK-NARAASVTRTG-AGV-LVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS 305 (499)
T ss_dssp HHHHHHHTTCEEET-TCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS
T ss_pred HHHHHHHCCCEEEe-CCEEEEEEEeC-CEE-EEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc
Confidence 99999999999999 99999998643 334 577888889999999999999999988 788999887 4679999999
Q ss_pred CCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCcCCceeeecccccCCCcceeeeeec
Q 011267 332 RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFG 409 (489)
Q Consensus 332 ~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~G 409 (489)
||+.|+|||+|||+..+. .+..|..+|+.+|.||++..... |..+|+++ .++.. +..+|
T Consensus 306 ~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~--~~~~~-------~a~vG 366 (499)
T 1xdi_A 306 RTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGVSPIRLRTVAATV--FTRPE-------IAAVG 366 (499)
T ss_dssp BCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCCCCCCGGGCEEEE--CSSSE-------EEEEE
T ss_pred ccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHhcCCCCccCCCCCCcEEE--EecCC-------ceEeC
Confidence 999999999999997532 44569999999999999742223 44556542 22221 55666
Q ss_pred CCcC-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC--hhh
Q 011267 410 DNVG-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAK 465 (489)
Q Consensus 410 ~~~~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~ 465 (489)
.... +... . .+....+.+++++ +++|+|+++++..+.++. .+..+|+++.+++ ...
T Consensus 367 ~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~ 446 (499)
T 1xdi_A 367 VPQSVIDAGSVAARTIMLPLRTNARAKMSEMRHGFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQT 446 (499)
T ss_dssp SCHHHHHHTSSCEEEEEEESTTSHHHHHTTCSSCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTS
T ss_pred CCHHHHHhCCCCEEEEEEecCcccceeecCCCceEEEEEEECCCCEEEEEEEECCchHHHHHHHHHHHHCCCCHHHHhcc
Confidence 5432 1111 0 0112357788776 599999998777766644 4566788888886 244
Q ss_pred hcCCCcHHHHHHHHHccCCc
Q 011267 466 LQQASSVEEALEIARAALPV 485 (489)
Q Consensus 466 ~~~~~~~~e~~~~~~~~~~~ 485 (489)
+..+||+.|++..+++++..
T Consensus 447 ~~~~Pt~~e~~~~~~~~~~~ 466 (499)
T 1xdi_A 447 LAVYPSLSGSITEAARRLMA 466 (499)
T ss_dssp BCCSSSTHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHHhc
Confidence 68889999999999887654
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=351.54 Aligned_cols=403 Identities=17% Similarity=0.240 Sum_probs=280.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccC----------------CC--CCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYL----------------FP--LDK 106 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~----------------~~--~~~ 106 (489)
+.++||||||||+||++||.+|++.|. +|+|||+++..+... +.-++.++ +. ...
T Consensus 4 ~~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~ 80 (474)
T 1zmd_A 4 PIDADVTVIGSGPGGYVAAIKAAQLGF---KTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSE 80 (474)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCC
Confidence 345899999999999999999999976 799999986532110 00000000 00 000
Q ss_pred CCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC-C-eEEeeCcEEecCCCCCCCCCCCC
Q 011267 107 KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-G-KLLKYGSLIVATGCTASRFPEKI 181 (489)
Q Consensus 107 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~-g-~~i~yd~lvlATG~~~~~~p~~~ 181 (489)
...++..+..... ........+++++.+++++.+ ++..++.....|.+.+ + .++.||+||+|||+.|.. |..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~-p~i~ 158 (474)
T 1zmd_A 81 VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNG-YGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTP-FPGI 158 (474)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECC-CTTC
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCC-CCCC
Confidence 0000000000000 000000134566789999987 4556777666677766 4 579999999999999864 4445
Q ss_pred CCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 182 GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 182 g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
|.+..++. +..+ +......+++++|||+|++|+|+|..|.++|.+|+++++.++++++.+++++.+.+.+.+++
T Consensus 159 g~~~~~v~---t~~~---~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~ 232 (474)
T 1zmd_A 159 TIDEDTIV---SSTG---ALSLKKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQK 232 (474)
T ss_dssp CCCSSSEE---CHHH---HTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHH
T ss_pred CCCcCcEE---cHHH---HhhccccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHH
Confidence 54333333 2222 22222357899999999999999999999999999999999999856899999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEe-----CCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKL-----EDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRT 333 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-----~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t 333 (489)
.||++++ +++|+++..++++.+ .+.+ .+++++++|.||+|+|++|++++ ++++|++.+ +|+|.||+++||
T Consensus 233 ~Gv~i~~-~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t 310 (474)
T 1zmd_A 233 QGFKFKL-NTKVTGATKKSDGKI-DVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRFQT 310 (474)
T ss_dssp TTCEEEC-SEEEEEEEECTTSCE-EEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTCBC
T ss_pred CCCEEEe-CceEEEEEEcCCceE-EEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCCcc
Confidence 9999999 999999986543323 3443 46678999999999999999987 788899876 467999999999
Q ss_pred CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCc
Q 011267 334 RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNV 412 (489)
Q Consensus 334 ~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~ 412 (489)
+.|+|||+|||+..+. .+..|..+|+.+|.||++... ..|..+|+++ .++.. +..+|...
T Consensus 311 ~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~--~~~~~-------~a~vG~~e 371 (474)
T 1zmd_A 311 KIPNIYAIGDVVAGPM----------LAHKAEDEGIICVEGMAGGAVHIDYNCVPSVI--YTHPE-------VAWVGKSE 371 (474)
T ss_dssp SSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTCCCCCCGGGCCEEE--CSSSE-------EEEEECCH
T ss_pred CCCCEEEeeecCCCCc----------cHHHHHHHHHHHHHHhcCCCCcCCCCCCCEEE--ECCCC-------eEEEeCCH
Confidence 9999999999997532 455699999999999996431 2344566543 22211 44556543
Q ss_pred C-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHH-hHHHHHHHhcCCCCC-h-hhhcC
Q 011267 413 G-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-K-AKLQQ 468 (489)
Q Consensus 413 ~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~-~~~~~ 468 (489)
. +... . ......+.+++++ +++|+|+++++..+.+ +..+..+|..+.+++ . ..++.
T Consensus 372 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~ 451 (474)
T 1zmd_A 372 EQLKEEGIEYKVGKFPFAANSRAKTNADTDGMVKILGQKSTDRVLGAHILGPGAGEMVNEAALALEYGASCEDIARVCHA 451 (474)
T ss_dssp HHHHHHTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHHSCCC
T ss_pred HHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCC
Confidence 2 1111 0 0112457788776 6999999986666655 445567788888876 2 44688
Q ss_pred CCcHHHHHHHHHccC
Q 011267 469 ASSVEEALEIARAAL 483 (489)
Q Consensus 469 ~~~~~e~~~~~~~~~ 483 (489)
|||+.|++..|+.++
T Consensus 452 ~Pt~~e~~~~~~~~~ 466 (474)
T 1zmd_A 452 HPTLSEAFREANLAA 466 (474)
T ss_dssp TTCTHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999999998653
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-41 Score=349.84 Aligned_cols=399 Identities=16% Similarity=0.209 Sum_probs=278.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCC-----------------CC-CCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF-----------------PL-DKKP 108 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~-----------------~~-~~~~ 108 (489)
++||+|||||+||++||.+|++.|. +|+|||+++...... +.-++.++. +. ....
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQLGM---KTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 4799999999999999999999986 799999986542110 000000000 00 0000
Q ss_pred CCCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 109 ARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 109 ~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
.++..+.... .........+++++.+++++.++ +..++....++.+.+| .++.||+||+|||+.|.. |..++.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~-p~~~g~ 156 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGE-GSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTE-LPFLPF 156 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEE-EEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECC-BTTBCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEE-EEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCC-CCCCCC
Confidence 0000000000 00000001345567799999875 4558876667777788 789999999999998864 444554
Q ss_pred CCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHH-Hhc
Q 011267 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLY-QQN 262 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l-~~~ 262 (489)
+.+++. +..+ +......+++++|||+|++|+|+|..|.+.|.+|+++++.+++++ .+++++.+.+.+.+ ++.
T Consensus 157 ~~~~v~---t~~~---~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~~ 229 (468)
T 2qae_A 157 DEKVVL---SSTG---ALALPRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAP-TLDEDVTNALVGALAKNE 229 (468)
T ss_dssp CSSSEE---CHHH---HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHT
T ss_pred CcCcee---chHH---HhhcccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccc-cCCHHHHHHHHHHHhhcC
Confidence 333433 2233 333223579999999999999999999999999999999999998 48999999999999 999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCC
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRM 335 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~ 335 (489)
||++++ +++|++++.++++ + .+.+. +| +++++|.||+|+|++|++++ ++.+|++.+ +|+|.||+++||+.
T Consensus 230 gv~i~~-~~~v~~i~~~~~~-~-~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~t~~ 306 (468)
T 2qae_A 230 KMKFMT-STKVVGGTNNGDS-V-SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSI 306 (468)
T ss_dssp CCEEEC-SCEEEEEEECSSS-E-EEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTSBCSS
T ss_pred CcEEEe-CCEEEEEEEcCCe-E-EEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCcccCC
Confidence 999999 9999999864333 3 45554 66 67999999999999999988 788899886 46799999999999
Q ss_pred CCeEEeccccc-cCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCc
Q 011267 336 PGIFAIGDVAA-FPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNV 412 (489)
Q Consensus 336 ~~Iya~GD~a~-~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~ 412 (489)
|+|||+|||+. .+. .+..|..+|+.+|.||++. ..++ ..+|+ ...++.. +..+|...
T Consensus 307 ~~IyA~GD~~~~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e 366 (468)
T 2qae_A 307 PDVYAIGDVVDKGPM----------LAHKAEDEGVACAEILAGK-PGHVNYGVIPA--VIYTMPE-------VASVGKSE 366 (468)
T ss_dssp TTEEECGGGBSSSCS----------CHHHHHHHHHHHHHHHTTC-CCCCCTTSCCE--EECSSSE-------EEEEECCH
T ss_pred CCEEEeeccCCCCCc----------cHhHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEECCCc-------eEEEeCCH
Confidence 99999999997 322 4556999999999999964 3333 34454 3322221 44556432
Q ss_pred C-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC-h-hhhcC
Q 011267 413 G-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K-AKLQQ 468 (489)
Q Consensus 413 ~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~ 468 (489)
. +... . ......+.+++++ +++|+|++++...+.++. .+..+|.++.+++ . ..++.
T Consensus 367 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~ 446 (468)
T 2qae_A 367 DELKKEGVAYKVGKFPFNANSRAKAVSTEDGFVKVLVDKATDRILGVHIVCTTAGELIGEACLAMEYGASSEDVGRTCHA 446 (468)
T ss_dssp HHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCC
T ss_pred HHHHhcCCCEEEEEEecccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccC
Confidence 1 1111 0 0112457788776 699999998777766654 4466788888876 2 34588
Q ss_pred CCcHHHHHHHHHccCC
Q 011267 469 ASSVEEALEIARAALP 484 (489)
Q Consensus 469 ~~~~~e~~~~~~~~~~ 484 (489)
|||+.|++..|++++.
T Consensus 447 ~Pt~~e~~~~~~~~~~ 462 (468)
T 2qae_A 447 HPTMSEALKEACMALF 462 (468)
T ss_dssp SSCTHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987654
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-41 Score=349.81 Aligned_cols=397 Identities=19% Similarity=0.236 Sum_probs=275.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C---CC--Cc--c---ccCCCCCCCCCCC-----
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R---PA--LT--K---GYLFPLDKKPARL----- 111 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~---~~--l~--~---~~~~~~~~~~~~~----- 111 (489)
.++||+|||||+||++||.+|++.|. +|+|||++.. ... . |. +. . ..+..........
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 85 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAASYGA---KTLLVEAKAL-GGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLD 85 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTSC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred ccCCEEEEcCCHHHHHHHHHHHHCCC---cEEEEeCCCc-CCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence 46899999999999999999999876 7999999742 100 0 00 00 0 0000000000000
Q ss_pred C-----CCccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCCCCCC
Q 011267 112 P-----GFHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTASRFP 178 (489)
Q Consensus 112 ~-----~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~~~~p 178 (489)
+ .+..... .........++++.+++++.+ ++..++.....+.+.+|+ ++.||+||+|||+.|.. |
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~-p 163 (479)
T 2hqm_A 86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFG-WARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIF-P 163 (479)
T ss_dssp GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE-EEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECC-C
T ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC-C
Confidence 0 0000000 000000123345679999987 577777766667777776 79999999999999864 4
Q ss_pred -CCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHH
Q 011267 179 -EKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (489)
Q Consensus 179 -~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~ 257 (489)
.++|. + ... +.+.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+
T Consensus 164 ~~i~g~--~---~~~---~~~~~~~l~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~ 234 (479)
T 2hqm_A 164 ENIPGF--E---LGT---DSDGFFRLEEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLR-KFDECIQNTITD 234 (479)
T ss_dssp TTSTTG--G---GSB---CHHHHHHCSSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHH
T ss_pred CCCCCc--c---ccc---chHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCcccc-ccCHHHHHHHHH
Confidence 44442 1 111 2333444334679999999999999999999999999999999999987 489999999999
Q ss_pred HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEccCCCCCCch-hhhcCCeec-CCcEEeCCCCCCC
Q 011267 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVSP-FERVGLNSS-VGGIQVDGQFRTR 334 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~~p~~~~-~~~~gl~~~-~g~i~vd~~~~t~ 334 (489)
.+++.||++++ +++|++++..+++.+..|.+++| +++++|.||+|+|++|++.+ ++.+|++.+ +|+|.||+++||+
T Consensus 235 ~l~~~Gv~i~~-~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~~t~ 313 (479)
T 2hqm_A 235 HYVKEGINVHK-LSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQNTN 313 (479)
T ss_dssp HHHHHTCEEEC-SCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTCBCS
T ss_pred HHHhCCeEEEe-CCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCCccC
Confidence 99999999999 99999998654443456888899 78999999999999999977 789999886 5779999999999
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC---C--CCCCcCCceeeecccccCCCcceeeeeec
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ---T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFG 409 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~---~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G 409 (489)
.|+|||+|||+..+ ..+..|..+|+.+|.||++.. . ..|..+|+. .|..+. +..+|
T Consensus 314 ~~~IyA~GD~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~~p~~---~~~~~~------~~~vG 374 (479)
T 2hqm_A 314 VPNIYSLGDVVGKV----------ELTPVAIAAGRKLSNRLFGPEKFRNDKLDYENVPSV---IFSHPE------AGSIG 374 (479)
T ss_dssp STTEEECGGGTTSS----------CCHHHHHHHHHHHHHHHHSCGGGTTCCCCCTTCCEE---ECCSSC------EEEEE
T ss_pred CCCEEEEEecCCCc----------ccHHHHHHHHHHHHHHhcCCCccCcccCCCCCCCeE---EECCCC------eEEEe
Confidence 99999999997642 256679999999999999643 2 234445542 222111 33444
Q ss_pred CCcCc---------EEEE------------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-
Q 011267 410 DNVGE---------TIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K- 463 (489)
Q Consensus 410 ~~~~~---------~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~- 463 (489)
....+ .... ......+.++.++ +++|+|+++++.++.++... ..++..+.+++ .
T Consensus 375 l~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~ 454 (479)
T 2hqm_A 375 ISEKEAIEKYGKENIKVYNSKFTAMYYAMLSEKSPTRYKIVCAGPNEKVVGLHIVGDSSAEILQGFGVAIKMGATKADFD 454 (479)
T ss_dssp CCHHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHH
T ss_pred CCHHHHHhcCCCCcEEEEEEeccHHHHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHh
Confidence 32110 1110 1112346677665 59999999876667776655 45678888776 2
Q ss_pred hhhcCCCcHHHHHHHHHc
Q 011267 464 AKLQQASSVEEALEIARA 481 (489)
Q Consensus 464 ~~~~~~~~~~e~~~~~~~ 481 (489)
..+..|||+.|++..+++
T Consensus 455 ~~~~~hPt~~e~~~~~~~ 472 (479)
T 2hqm_A 455 NCVAIHPTSAEELVTMRG 472 (479)
T ss_dssp TSCCCSSCSGGGGGSCC-
T ss_pred hCcCCCCChHHHHHHHHH
Confidence 446889999999887654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-41 Score=349.52 Aligned_cols=396 Identities=21% Similarity=0.264 Sum_probs=273.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCC--------------C--CCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLF--------------P--LDKKPAR 110 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~--------------~--~~~~~~~ 110 (489)
++||+|||||+||++||.+|++.|. +|+|||++. .+.. . +.-++.++. . ......+
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~~g~---~V~lie~~~-~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 78 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN-LGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTID 78 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCC-CCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccC
Confidence 5799999999999999999999976 799999973 2100 0 000000000 0 0000000
Q ss_pred CCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC-eEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 111 LPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG-KLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 111 ~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g-~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
+..+.... .........+++++.+++++.++. ..++.....+.+.+| .++.||+||+|||+.|.. |..++.+..
T Consensus 79 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~-~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~-~~~~g~~~~ 156 (455)
T 1ebd_A 79 FAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEA-YFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIE-LPNFKFSNR 156 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEE-EEEETTEEEEEETTEEEEEECSEEEECCCEEECC-BTTBCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCC-CCCCCccce
Confidence 00000000 000000012455677999998754 457776667777777 689999999999998864 444443221
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
+.+..+ .......+++++|||+|++|+|+|..|+++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 157 ----v~~~~~---~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 157 ----ILDSTG---ALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp ----EECHHH---HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred ----EecHHH---HhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence 223333 3332235799999999999999999999999999999999999884 89999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeC---CCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEE
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLE---DGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFA 340 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~---~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya 340 (489)
++ +++|++++.+++ .+ .+.+. +++++++|.||+|+|++|++++ ++.+|++.+ +|+|.||+++||+.|+|||
T Consensus 229 ~~-~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya 305 (455)
T 1ebd_A 229 VT-NALAKGAEERED-GV-TVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFA 305 (455)
T ss_dssp EE-SEEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTCBCSSTTEEE
T ss_pred Ee-CCEEEEEEEeCC-eE-EEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCcccCCCCEEE
Confidence 99 999999985432 22 35543 4568999999999999999987 788899876 4679999999999999999
Q ss_pred eccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCcC-----
Q 011267 341 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNVG----- 413 (489)
Q Consensus 341 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~----- 413 (489)
+|||+..+. .+..|..+|+.+|.||++. ..++ ..+|+ ...++.. +..+|....
T Consensus 306 ~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~ 365 (455)
T 1ebd_A 306 IGDIVPGPA----------LAHKASYEGKVAAEAIAGH-PSAVDYVAIPA--VVFSDPE-------CASVGYFEQQAKDE 365 (455)
T ss_dssp CGGGSSSCC----------CHHHHHHHHHHHHHHHTSC-CCCCCCSCCCE--EECSSSC-------EEEEECCHHHHHTT
T ss_pred EeccCCCcc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEECCCc-------eEEEeCCHHHHHhc
Confidence 999997432 4456899999999999964 3343 33453 3333221 344554321
Q ss_pred --cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC--hhhhcCCCcHHH
Q 011267 414 --ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEE 474 (489)
Q Consensus 414 --~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~e 474 (489)
+... . ......+.+++++ +++|+|+++++..+.++. .+..+|+++.+++ ...++.|||++|
T Consensus 366 g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~e 445 (455)
T 1ebd_A 366 GIDVIAAKFPFAANGRALALNDTDGFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGE 445 (455)
T ss_dssp TCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTH
T ss_pred CCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEeCCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHH
Confidence 1111 0 0112457787776 699999998766666654 4456788888886 344688999999
Q ss_pred HHHHHHccC
Q 011267 475 ALEIARAAL 483 (489)
Q Consensus 475 ~~~~~~~~~ 483 (489)
++..|++++
T Consensus 446 ~~~~~~~~~ 454 (455)
T 1ebd_A 446 IAMEAAEVA 454 (455)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999998754
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=351.72 Aligned_cols=399 Identities=17% Similarity=0.230 Sum_probs=273.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---CCCC-ccccC----------------CCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---RPAL-TKGYL----------------FPLDKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~~~l-~~~~~----------------~~~~~~~~ 109 (489)
.++||+|||||+||++||.+|++.|. +|+|||+++..... ..-. ++.++ ........
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~ 81 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL 81 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 35899999999999999999999886 69999997553210 0000 00000 00000000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC------------eEEeeCcEEecCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG------------KLLKYGSLIVATGCTA 174 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g------------~~i~yd~lvlATG~~~ 174 (489)
++........ .........++++.+++++.++.+ .++.....+.+.+| .++.||+||+|||+.|
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p 160 (482)
T 1ojt_A 82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQ-FLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRV 160 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEE-EEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEE-EccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCC
Confidence 0000000000 000000123456789999987544 35553334444455 6799999999999998
Q ss_pred CCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHH
Q 011267 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (489)
Q Consensus 175 ~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~ 254 (489)
..++..+. + ..+. +..+ +......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.
T Consensus 161 ~~~~~i~~-~-~~v~---~~~~---~~~~~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~ 231 (482)
T 1ojt_A 161 TKLPFIPE-D-PRII---DSSG---ALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKV 231 (482)
T ss_dssp CCCSSCCC-C-TTEE---CHHH---HTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHH
T ss_pred CCCCCCCc-c-CcEE---cHHH---HhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc-cCHHHHHH
Confidence 75442332 1 1222 3333 2222235799999999999999999999999999999999999984 89999999
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC----CcEEEcCEEEEccCCCCCCch--hhhcCCeecC-CcEEe
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED----GSTIDADTIVIGIGAKPTVSP--FERVGLNSSV-GGIQV 327 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~----g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~-g~i~v 327 (489)
+.+.+++.||++++ +++|++++.+++ . ..+++.+ |+++++|.||+|+|++|++++ ++.+|++.++ |+|.|
T Consensus 232 l~~~l~~~gV~i~~-~~~v~~i~~~~~-~-~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~v 308 (482)
T 1ojt_A 232 WQKQNEYRFDNIMV-NTKTVAVEPKED-G-VYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEV 308 (482)
T ss_dssp HHHHHGGGEEEEEC-SCEEEEEEEETT-E-EEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCC
T ss_pred HHHHHHhcCCEEEE-CCEEEEEEEcCC-e-EEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEee
Confidence 99999999999999 999999985432 2 3567766 778999999999999999987 6889998874 66999
Q ss_pred CCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCcCCceeeecccccCCCcceee
Q 011267 328 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWW 405 (489)
Q Consensus 328 d~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~ 405 (489)
|+++||+.|+|||+|||+..+. .+..|..+|+.+|.||++. ..+ +..+|+ ...++.+ +
T Consensus 309 d~~~~t~~~~IyA~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~~~-------~ 368 (482)
T 1ojt_A 309 DKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGH-KAYFDARVIPG--VAYTSPE-------V 368 (482)
T ss_dssp CTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTC-CCCCCCCCCCE--EECSSSC-------E
T ss_pred CCCcccCCCCEEEEEcccCCCc----------cHHHHHHHHHHHHHHHcCC-CccCCCCCCCE--EEEcCCC-------e
Confidence 9999999999999999997432 4556999999999999963 333 334454 2222221 4
Q ss_pred eeecCCcC-------cEEE--E----------ccCCCcEEEEEE--ECCEEEEEEeccCCHHHhHH-HHHHHhcCCCCC-
Q 011267 406 QFFGDNVG-------ETIE--I----------GNFDPKIATFWI--DSGKLKGVLVESGSPEEFQL-LPTLARSQPFVD- 462 (489)
Q Consensus 406 ~~~G~~~~-------~~~~--~----------~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~- 462 (489)
..+|.... +... . ......+.++++ ++++|+|+++++..+.++.. +..+|..+.+++
T Consensus 369 a~vG~te~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~ 448 (482)
T 1ojt_A 369 AWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAAD 448 (482)
T ss_dssp EEEECCHHHHHHHTCCEEEEEEEGGGCHHHHHTTCCSCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHH
T ss_pred EEEeCCHHHHHhcCCCEEEEEEEcCcchHHhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Confidence 45554321 1111 1 011235778877 46999999987666666554 456678888876
Q ss_pred h-hhhcCCCcHHHHHHHHHccCC
Q 011267 463 K-AKLQQASSVEEALEIARAALP 484 (489)
Q Consensus 463 ~-~~~~~~~~~~e~~~~~~~~~~ 484 (489)
. ..++.|||+.|++..|++++.
T Consensus 449 l~~~~~~~Pt~~e~~~~a~~~~~ 471 (482)
T 1ojt_A 449 IGKTIHPHPTLGESIGMAAEVAL 471 (482)
T ss_dssp HHTSCCCSSSSTTHHHHHHHHHH
T ss_pred HhcCccCCCCHHHHHHHHHHHHh
Confidence 2 346889999999999987543
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-42 Score=351.26 Aligned_cols=398 Identities=20% Similarity=0.240 Sum_probs=274.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccCCC-----C---CCCCCCCC-----C
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYLFP-----L---DKKPARLP-----G 113 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~~~-----~---~~~~~~~~-----~ 113 (489)
++||+|||||+||++||..|++.|. +|+|||++. .+-. . ..-++.++.. . ......++ .
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~~G~---~V~liE~~~-~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQLGL---STAIVEPKY-WGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFD 78 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccC
Confidence 5799999999999999999999986 799999973 2100 0 0000000000 0 00000000 0
Q ss_pred CccccC------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCCCCC
Q 011267 114 FHTCVG------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIGGYL 185 (489)
Q Consensus 114 ~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g~~~ 185 (489)
+..... ........+++++.+++++.++.+ .++....++.+.+| .++.||+||+|||+.|.. |..++.+.
T Consensus 79 ~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~-~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~-~~~~g~~~ 156 (464)
T 2a8x_A 79 YGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGT-FADANTLLVDLNDGGTESVTFDNAIIATGSSTRL-VPGTSLSA 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEE-ESSSSEEEEEETTSCCEEEEEEEEEECCCEEECC-CTTCCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-EecCCeEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCCCCc
Confidence 000000 000000134556789999987544 35554456666777 689999999999998864 44444322
Q ss_pred CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
. +.+..+ .......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus 157 ~----~~~~~~---~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gv~ 228 (464)
T 2a8x_A 157 N----VVTYEE---QILSRELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALP-NEDADVSKEIEKQFKKLGVT 228 (464)
T ss_dssp T----EECHHH---HHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHTCE
T ss_pred e----EEecHH---HhhccccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHcCCE
Confidence 2 223333 333223579999999999999999999999999999999999998 48999999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeE
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIF 339 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iy 339 (489)
+++ +++|++++.+++ .+ .+.+. +| +++++|.||+|+|++|++++ ++++|++.+ +|+|.||+++||+.|+||
T Consensus 229 i~~-~~~v~~i~~~~~-~~-~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~~~~Iy 305 (464)
T 2a8x_A 229 ILT-ATKVESIADGGS-QV-TVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVGHIY 305 (464)
T ss_dssp EEC-SCEEEEEEECSS-CE-EEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTSBCSSTTEE
T ss_pred EEe-CcEEEEEEEcCC-eE-EEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCCccCCCCEE
Confidence 999 999999985433 33 45554 56 67999999999999999988 788899886 477999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC---CCcCCceeeecccccCCCcceeeeeecCCcC---
Q 011267 340 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT---YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--- 413 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~---~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--- 413 (489)
|+|||+..+. .+..|..+|+.+|.||++....+ |..+|++ ..++.. +..+|....
T Consensus 306 A~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~--~~~~~~-------~a~vG~~e~~a~ 366 (464)
T 2a8x_A 306 AIGDVNGLLQ----------LAHVAEAQGVVAAETIAGAETLTLGDHRMLPRA--TFCQPN-------VASFGLTEQQAR 366 (464)
T ss_dssp ECGGGGCSSC----------SHHHHHHHHHHHHHHHHTCCCCCCCCGGGSCEE--ECSSSE-------EEEEECCHHHHH
T ss_pred EeECcCCCcc----------CHHHHHHHHHHHHHHhcCCCCcccCCCCCCCEE--EECCCC-------eEEEcCCHHHHH
Confidence 9999997432 45569999999999999623333 4445643 222221 445554321
Q ss_pred ----cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC-h-hhhcCCCcH
Q 011267 414 ----ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K-AKLQQASSV 472 (489)
Q Consensus 414 ----~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~ 472 (489)
+... . ......+.+++++ +++|+|+++++..+.++. .+..+++++.+++ . ..++.|||+
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~ 446 (464)
T 2a8x_A 367 NEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLVGHDVAELLPELTLAQRWDLTASELARNVHTHPTM 446 (464)
T ss_dssp HTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTTEEEEEEEEETTGGGGHHHHHHHHHTTCBHHHHTTSCCCTTCT
T ss_pred hcCCCEEEEEEEcchhhhhhhcCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhhCccCCCCh
Confidence 1111 0 0112457788775 699999998766665544 4566788888875 2 345889999
Q ss_pred HHHHHHHHccCC
Q 011267 473 EEALEIARAALP 484 (489)
Q Consensus 473 ~e~~~~~~~~~~ 484 (489)
.|++..|++++.
T Consensus 447 ~e~~~~~~~~~~ 458 (464)
T 2a8x_A 447 SEALQECFHGLV 458 (464)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999986543
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=348.87 Aligned_cols=401 Identities=19% Similarity=0.271 Sum_probs=277.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----CccccC-----------------CCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LTKGYL-----------------FPLDKK 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~----l~~~~~-----------------~~~~~~ 107 (489)
+.++||+|||||+||++||.+|++.|. +|+|||+++........ -++.++ ......
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~---~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~ 80 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV 80 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred CccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence 356899999999999999999999986 79999998654221000 000000 000000
Q ss_pred CCCCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCCCC
Q 011267 108 PARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 108 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~~g 182 (489)
..++..+.... ..........++++.+++++.+..+ .++.....+.+.+| .++.||+||+|||+.|.. |..+|
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~-~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~-p~~~g 158 (470)
T 1dxl_A 81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGK-FVSPSEISVDTIEGENTVVKGKHIIIATGSDVKS-LPGVT 158 (470)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEE-EEETTEEEECCSSSCCEEEECSEEEECCCEEECC-BTTBC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEE-EecCCEEEEEeCCCceEEEEcCEEEECCCCCCCC-CCCCC
Confidence 00000000000 0000000123556679999998654 47765556666677 789999999999998864 44455
Q ss_pred CCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc
Q 011267 183 GYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN 262 (489)
Q Consensus 183 ~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~ 262 (489)
.+.+++.+ .. .+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.
T Consensus 159 ~~~~~v~~---~~---~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~-~~~~~~~~~l~~~l~~~ 231 (470)
T 1dxl_A 159 IDEKKIVS---ST---GALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQ 231 (470)
T ss_dssp CCSSSEEC---HH---HHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHS
T ss_pred CCcccEEe---HH---HhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc-cccHHHHHHHHHHHHHc
Confidence 43333332 22 2222223579999999999999999999999999999999999998 58999999999999999
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeC---CC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCC
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTR 334 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~ 334 (489)
||++++ +++|+++..+++ .+ .+.+. +| +++++|.||+|+|++|++++ ++++|++.+ +|+|.||+++||+
T Consensus 232 gv~i~~-~~~v~~i~~~~~-~~-~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~~t~ 308 (470)
T 1dxl_A 232 GMKFKL-KTKVVGVDTSGD-GV-KLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERFSTN 308 (470)
T ss_dssp SCCEEC-SEEEEEEECSSS-SE-EEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTCBCS
T ss_pred CCEEEe-CCEEEEEEEcCC-eE-EEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCCccC
Confidence 999999 999999985433 33 35553 44 67999999999999999988 788899886 4679999999999
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCC--CcCCceeeecccccCCCcceeeeeecCCc
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTY--DYLPYFYSRVFEYEGSPRKVWWQFFGDNV 412 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~G~~~ 412 (489)
.|+|||+|||+..+. .+..|..+|+.+|.||++. ..++ ..+|+ ...++.. +..+|...
T Consensus 309 ~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~~~-------~a~vG~~e 368 (470)
T 1dxl_A 309 VSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK-VGHVDYDKVPG--VVYTNPE-------VASVGKTE 368 (470)
T ss_dssp STTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS-CCCCCTTSCCE--EECSSSE-------EEEEECCH
T ss_pred CCCEEEEeccCCCCc----------cHHHHHHHHHHHHHHHcCC-CcCCCCCCCCE--EEECCCc-------eEEEcCCH
Confidence 999999999997432 4556999999999999964 3343 33453 3333221 44555432
Q ss_pred C-------cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC-h-hhhcC
Q 011267 413 G-------ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD-K-AKLQQ 468 (489)
Q Consensus 413 ~-------~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~ 468 (489)
. +... . ......+.+++++ +++|+|+++++..+.++. .+..++.++.+++ . ..++.
T Consensus 369 ~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~l~~~~~~ 448 (470)
T 1dxl_A 369 EQVKETGVEYRVGKFPFMANSRAKAIDNAEGLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHA 448 (470)
T ss_dssp HHHHHTTCCEEEEEEEGGGCHHHHHHSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCC
T ss_pred HHHHhcCCcEEEEEEecccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccC
Confidence 1 1111 0 0112457788776 699999998777766654 4466788888876 2 34588
Q ss_pred CCcHHHHHHHHHccCC
Q 011267 469 ASSVEEALEIARAALP 484 (489)
Q Consensus 469 ~~~~~e~~~~~~~~~~ 484 (489)
|||+.|++..|++++.
T Consensus 449 ~Pt~~e~~~~~~~~~~ 464 (470)
T 1dxl_A 449 HPTMSEAIKEAAMATY 464 (470)
T ss_dssp SSCTTHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHh
Confidence 9999999999987644
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-41 Score=350.45 Aligned_cols=402 Identities=19% Similarity=0.264 Sum_probs=275.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCCC-----CCCCCCCCCCCccccC-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLFP-----LDKKPARLPGFHTCVG- 119 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~~-----~~~~~~~~~~~~~~~~- 119 (489)
.++||+|||||+||+++|..|++.|. +|+|||+++..+... +.-++.++.. .-.......+......
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~~G~---~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~ 80 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDI 80 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 35799999999999999999999986 799999965432100 0000000000 0000000000000000
Q ss_pred -CCC--------------CCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eE------EeeCcEEecCCCCCCC
Q 011267 120 -SGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KL------LKYGSLIVATGCTASR 176 (489)
Q Consensus 120 -~~~--------------~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~------i~yd~lvlATG~~~~~ 176 (489)
.+. ......++++.+++++.++.+. .+....+|.+.+| .+ +.||+||+|||+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~-~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~~ 159 (478)
T 1v59_A 81 KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSF-EDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTP 159 (478)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEE-SSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEECC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEE-ccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCCC
Confidence 000 0001235667899999876544 3443345566666 56 9999999999998753
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~ 256 (489)
+| +...++ ..+.+..++ ......+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.
T Consensus 160 ~~---g~~~~~-~~v~~~~~~---~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~ 231 (478)
T 1v59_A 160 FP---GIEIDE-EKIVSSTGA---LSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA-SMDGEVAKATQ 231 (478)
T ss_dssp CT---TCCCCS-SSEECHHHH---TTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS-SSCHHHHHHHH
T ss_pred CC---CCCCCC-ceEEcHHHH---HhhhccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc-ccCHHHHHHHH
Confidence 33 332333 122333333 22223479999999999999999999999999999999999998 58999999999
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-----CCcEEEcCEEEEccCCCCCCc--hhhhcCCeec-CCcEEeC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-----DGSTIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVD 328 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-----~g~~i~aD~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd 328 (489)
+.+++.||++++ +++|+++...+++....+.+. +++++++|.||+|+|++|+++ +++++|++.+ +|+|.||
T Consensus 232 ~~l~~~gv~i~~-~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd 310 (478)
T 1v59_A 232 KFLKKQGLDFKL-STKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVID 310 (478)
T ss_dssp HHHHHTTCEEEC-SEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCC
T ss_pred HHHHHCCCEEEe-CCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeEC
Confidence 999999999999 999999985212333456665 456899999999999999998 7899999886 5679999
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeee
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQF 407 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~ 407 (489)
+++||+.|+|||+|||+..+. .+..|..+|+.+|.||++... ..|..+|++|..... +..
T Consensus 311 ~~~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~p~~~~~~~~---------~a~ 371 (478)
T 1v59_A 311 DQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTGHGHVNYNNIPSVMYSHPE---------VAW 371 (478)
T ss_dssp TTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHSCCCCCTTSCCEEECSSSE---------EEE
T ss_pred cCCccCCCCEEEeeccCCCcc----------cHHHHHHHHHHHHHHHcCCCCCCCCCCCCEEEEcCCc---------EEE
Confidence 999999999999999997532 445699999999999997432 346667876643322 334
Q ss_pred ecCCcC-------cEEE-------------EccCCCcEEEEEEE--CCEEEEEEeccCCHHH-hHHHHHHHhcCCCCC-h
Q 011267 408 FGDNVG-------ETIE-------------IGNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD-K 463 (489)
Q Consensus 408 ~G~~~~-------~~~~-------------~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~-~ 463 (489)
+|.... +... .++ ...+.+++++ +++|+|++++...+.+ +..+..+|.++.+++ .
T Consensus 372 vG~~e~~a~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~~i~~~~~~~~l 450 (478)
T 1v59_A 372 VGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQD-TEGFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDV 450 (478)
T ss_dssp EECCHHHHHHTTCCEEEEEEEGGGCHHHHHTTC-CCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHH
T ss_pred EECCHHHHHHcCCCEEEEEEecccchhhhhcCC-CcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHH
Confidence 554321 1111 111 2346666665 6999999986666555 556677888998874 3
Q ss_pred -hhhcCCCcHHHHHHHHHccCC
Q 011267 464 -AKLQQASSVEEALEIARAALP 484 (489)
Q Consensus 464 -~~~~~~~~~~e~~~~~~~~~~ 484 (489)
...+.||++.|++..++.++.
T Consensus 451 ~~~~~~~Pt~~e~~~~~~~~~~ 472 (478)
T 1v59_A 451 ARVCHAHPTLSEAFKEANMAAY 472 (478)
T ss_dssp HTSCCCTTCTTHHHHHHHHHHH
T ss_pred hhCCCCCCCHHHHHHHHHHHHh
Confidence 335788999999999986543
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-42 Score=356.16 Aligned_cols=401 Identities=17% Similarity=0.231 Sum_probs=262.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--CCC---CC--C------c------cccCCCCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--YER---PA--L------T------KGYLFPLDKKPARL 111 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--y~~---~~--l------~------~~~~~~~~~~~~~~ 111 (489)
++||||||||+||++||.+|++.|. +|+|||+++... .++ |. + . ..+-.... ...++
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~-~~~~~ 77 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAARHNA---KVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTK-FSFNL 77 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCC-CCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccC-CccCH
Confidence 4799999999999999999999876 799999985210 000 00 0 0 00000000 00000
Q ss_pred CCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCC-------------CeEEeeCcEEecCCCCCC
Q 011267 112 PGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNS-------------GKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 112 ~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~-------------g~~i~yd~lvlATG~~~~ 175 (489)
+.+..... .........++++.+++++.+. +..++. +.+.+.+ +.++.||+||+|||+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~ 154 (500)
T 1onf_A 78 PLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGT-ASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV 154 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-CCCC----------------------------CBSSEEECCCCCBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence 00000000 0000001234467899999874 444554 4455533 667999999999999987
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHH
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRY 255 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l 255 (489)
.|.++|. +.+.+ .+.+... ..+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+
T Consensus 155 -~p~i~G~--~~~~~------~~~~~~~-~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l 223 (500)
T 1onf_A 155 -FPPVKGI--ENTIS------SDEFFNI-KESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVL 223 (500)
T ss_dssp -CCSCTTG--GGCEE------HHHHTTC-CCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHH
T ss_pred -CCCCCCC--CcccC------HHHHhcc-CCCCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCc-ccchhhHHHH
Confidence 4544442 12221 2233222 2288999999999999999999999999999999999997 5899999999
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEccCCCCCCc-h-hhhcCCeecCCcEEeCCCCC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPTVS-P-FERVGLNSSVGGIQVDGQFR 332 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~aD~vi~a~G~~p~~~-~-~~~~gl~~~~g~i~vd~~~~ 332 (489)
.+.+++.||++++ ++.|++++.++++. ..+.+++|++ +++|.||+|+|++|+++ + ++.+|++.++|+|.||+++|
T Consensus 224 ~~~l~~~gv~i~~-~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~G~i~vd~~~~ 301 (500)
T 1onf_A 224 ENDMKKNNINIVT-FADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVETNNNYIVVDENQR 301 (500)
T ss_dssp HHHHHHTTCEEEC-SCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCBSSSCEEECTTCB
T ss_pred HHHHHhCCCEEEE-CCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccccCCEEEECCCcc
Confidence 9999999999999 99999998654443 3678889988 99999999999999986 4 68889988667799999999
Q ss_pred CCCCCeEEeccccccCCcc-----------------------CC-cccccccHHHHHHHHHHHHHHHhcCCCC--CCCcC
Q 011267 333 TRMPGIFAIGDVAAFPLKM-----------------------YD-RTARVEHVDHARQSAQHCIKALLSAQTH--TYDYL 386 (489)
Q Consensus 333 t~~~~Iya~GD~a~~~~~~-----------------------~~-~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~ 386 (489)
|+.|+|||+|||+..+... .+ ...+...+..|..+|+.+|.||++.... .|..+
T Consensus 302 t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~ 381 (500)
T 1onf_A 302 TSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLKKTRKTNYKLI 381 (500)
T ss_dssp CSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSCTTCCCCCSSC
T ss_pred cCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCCCCccCCCCCC
Confidence 9999999999999532100 00 0023457888999999999999974332 35555
Q ss_pred CceeeecccccCCCcceeeeeecCCcC---------cEEE----------------EccCCCcEEEEEEE--CCEEEEEE
Q 011267 387 PYFYSRVFEYEGSPRKVWWQFFGDNVG---------ETIE----------------IGNFDPKIATFWID--SGKLKGVL 439 (489)
Q Consensus 387 p~~~~~~~~~~~~~~~~~~~~~G~~~~---------~~~~----------------~~~~~~~~~~~~~~--~~~~~g~~ 439 (489)
|+. ..++.+ +..+|.... .... .......+.++.++ +++|+|++
T Consensus 382 p~~--~~~~~~-------~a~vGl~e~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~ilG~~ 452 (500)
T 1onf_A 382 PTV--IFSHPP-------IGTIGLSEEAAIQIYGKENVKIYESKFTNLFFSVYDIEPELKEKTYLKLVCVGKDELIKGLH 452 (500)
T ss_dssp CEE--ECCSSC-------EEEEECCHHHHHHHTCGGGEEEEEEEECCGGGTTSCSCGGGSCCEEEEEEEETTTTEEEEEE
T ss_pred CeE--EEcCcc-------eEEEeCCHHHHHhcCCCccEEEEEEECchhhhhhccccccCCCceEEEEEEECCCCEEEEEE
Confidence 542 211111 334443211 1111 01112346677664 59999999
Q ss_pred eccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 440 VESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 440 ~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
+++.++.++... ..+++.+.+++ . ..+..|||+.|++..++
T Consensus 453 ~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~~~~~~ 496 (500)
T 1onf_A 453 IIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLTLQ 496 (500)
T ss_dssp EESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHHCC
T ss_pred EECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHhc
Confidence 876667776655 45578888776 2 44688999999998764
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-41 Score=343.77 Aligned_cols=400 Identities=16% Similarity=0.161 Sum_probs=278.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccC-----------CCCCCCCCCCCCCc
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYL-----------FPLDKKPARLPGFH 115 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~-----------~~~~~~~~~~~~~~ 115 (489)
++||+|||||+||++||..|++.|. +|+|||+++...... +.-++.++ ........++....
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~~G~---~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~ 80 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAKAKY---NVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQ 80 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHH
Confidence 5899999999999999999999987 799999776543110 00000000 00000000100000
Q ss_pred cccCC--CCC--CCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeE--EeeCcEEecCCCCCCCCCCCCCCCCCceE
Q 011267 116 TCVGS--GGE--RQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL--LKYGSLIVATGCTASRFPEKIGGYLPGVH 189 (489)
Q Consensus 116 ~~~~~--~~~--~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~--i~yd~lvlATG~~~~~~p~~~g~~~~gv~ 189 (489)
..... ... .....++++.+++++.+ ++..++.....|.+.+|++ +.||+||+|||+.|. .|..+|.+ +
T Consensus 81 ~~~~~~~~l~~~~~~~~~~~~~~v~~~~g-~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~-~p~i~G~~--~-- 154 (466)
T 3l8k_A 81 DRKDYVQELRFKQHKRNMSQYETLTFYKG-YVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETA-KLRLPGVE--Y-- 154 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCTTEEEESE-EEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEEC-CCCCTTGG--G--
T ss_pred HHHHhheeccccchHHHHHHhCCCEEEEe-EEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCcc-CCCCCCcc--c--
Confidence 00000 000 01122334568999986 7889998888888888888 999999999999886 45444532 2
Q ss_pred eecCHHHHHHHH-HhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 190 YIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 190 ~~~~~~~~~~~~-~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
+.+..+...+. .....+++++|||+|++|+|+|..|.++|.+|+++++.+++++..+++++.+.+.+.++ |++++
T Consensus 155 -~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~---v~i~~ 230 (466)
T 3l8k_A 155 -CLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILK---LNIKF 230 (466)
T ss_dssp -SBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHC---CCEEC
T ss_pred -eEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCE---EEEEE
Confidence 33333333222 22235789999999999999999999999999999999999986449999999988876 99999
Q ss_pred cCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCCCCCCch-hhhcCCeecCCcEEeCCCCCCCCCCeEEecc
Q 011267 269 VGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSP-FERVGLNSSVGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~~p~~~~-~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD 343 (489)
++.|+++...+++.+ .+.++ +|+ ++++|.||+|+|++|++++ ++.+|++.+++||.||+++||++|+|||+||
T Consensus 231 -~~~v~~i~~~~~~~v-~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~Gi~vd~~~~t~~~~Iya~GD 308 (466)
T 3l8k_A 231 -NSPVTEVKKIKDDEY-EVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTGIVVDETMKTNIPNVFATGD 308 (466)
T ss_dssp -SCCEEEEEEEETTEE-EEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSSBCCCTTCBCSSTTEEECGG
T ss_pred -CCEEEEEEEcCCCcE-EEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCCEeECCCccCCCCCEEEEEe
Confidence 999999986432444 47776 666 7999999999999999986 7889998874349999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhcC--CCC--CCCcCCceeeecccccCCCcceeeeeecCCcCc-----
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA--QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----- 414 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~--~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~----- 414 (489)
|+..+. .+..|..+|+.+|.||++. ... .+..+|+ ....+.. +..+|....+
T Consensus 309 ~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~~p~--~~~~~~~-------~a~vG~te~~a~~~g 369 (466)
T 3l8k_A 309 ANGLAP----------YYHAAVRMSIAAANNIMANGMPVDYVDVKSIPV--TIYTIPS-------LSYVGILPSKARKMG 369 (466)
T ss_dssp GTCSCC----------SHHHHHHHHHHHHHHHHTTTSCCCCCCSTTSCE--EECSSSC-------EEEEECCHHHHHHHT
T ss_pred cCCCCc----------cHhHHHHHHHHHHHHHhCCCCCccccCCCCCcE--EEECCCC-------eEEecCCHHHHHhCC
Confidence 997532 4566999999999999975 332 3344443 3222222 4556654321
Q ss_pred --E--EEEc----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHH
Q 011267 415 --T--IEIG----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA 475 (489)
Q Consensus 415 --~--~~~~----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~ 475 (489)
. .... .....+.++.++ +++|+|+++++.++.++... ..+|+.+.+++ . ..++.|||+.|+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~~~~Pt~~e~ 449 (466)
T 3l8k_A 370 IEIVEAEYNMEEDVSAQIYGQKEGVLKLIFERGSMRLIGAWMIGVHSQYLINELGLAVAYGLNAKQLASFAEQHPSTNEI 449 (466)
T ss_dssp CCEEEEEEEGGGSHHHHHHTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHCCCCTTSTTHH
T ss_pred CCEEEEEEEcccChhheecCCCeEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCcCCHHHHhccccCCCChHHH
Confidence 1 1110 012346777665 49999999877777776554 55678888886 3 446889999999
Q ss_pred HHHHHccCC
Q 011267 476 LEIARAALP 484 (489)
Q Consensus 476 ~~~~~~~~~ 484 (489)
+..+++++.
T Consensus 450 ~~~~~~~~~ 458 (466)
T 3l8k_A 450 ISYTARKVI 458 (466)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=342.07 Aligned_cols=396 Identities=20% Similarity=0.265 Sum_probs=273.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC---CCCCC-ccccC--------------CCC-CCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY---ERPAL-TKGYL--------------FPL-DKKPAR 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y---~~~~l-~~~~~--------------~~~-~~~~~~ 110 (489)
+++||||||||+||++||.+|++.|. +|+|||+++. +. +..-. ++.++ +.. .....+
T Consensus 5 ~~~dvvIIG~G~aG~~aA~~l~~~g~---~V~lie~~~~-GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (464)
T 2eq6_A 5 KTYDLIVIGTGPGGYHAAIRAAQLGL---KVLAVEAGEV-GGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELD 80 (464)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEEC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC-CCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcC
Confidence 35899999999999999999999876 7999999862 10 00000 00000 000 000000
Q ss_pred CCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCc
Q 011267 111 LPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPG 187 (489)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~g 187 (489)
+..+..... .........++++.+++++.+. +..++. +++.+. |.++.||+||+|||++|..+|..++. ..
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~-~~~~~~--~~v~v~-g~~~~~d~lViATGs~p~~p~gi~~~--~~ 154 (464)
T 2eq6_A 81 LKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGF-ARLVGP--KEVEVG-GERYGAKSLILATGSEPLELKGFPFG--ED 154 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEEEET--TEEEET-TEEEEEEEEEECCCEEECCBTTBCCS--SS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeee-EEEccC--CEEEEc-cEEEEeCEEEEcCCCCCCCCCCCCCC--Cc
Confidence 000000000 0000001235667899999875 444654 577776 77899999999999998744323331 12
Q ss_pred eEeecCHHHHHHHHHhhc-CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 188 VHYIRDVADADALISSLE-KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 188 v~~~~~~~~~~~~~~~~~-~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
+. +..+. ..... .+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.||++
T Consensus 155 v~---~~~~~---~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~gV~i 227 (464)
T 2eq6_A 155 VW---DSTRA---LKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILP-QGDPETAALLRRALEKEGIRV 227 (464)
T ss_dssp EE---CHHHH---TCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEE
T ss_pred EE---cHHHH---HhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHhcCCEE
Confidence 22 33333 22222 579999999999999999999999999999999999988 489999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeC-C--Cc--EEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCe
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLE-D--GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGI 338 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~-~--g~--~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~I 338 (489)
++ +++|++++.++ +.+ .+.+. + |+ ++++|.||+|+|++|++++ ++.+|++.+ +|+|.||+++||+.|+|
T Consensus 228 ~~-~~~v~~i~~~~-~~~-~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~I 304 (464)
T 2eq6_A 228 RT-KTKAVGYEKKK-DGL-HVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARMETSVPGV 304 (464)
T ss_dssp EC-SEEEEEEEEET-TEE-EEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTCBCSSTTE
T ss_pred Ec-CCEEEEEEEeC-CEE-EEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCcccCCCCE
Confidence 99 99999998543 333 46665 6 76 8999999999999999986 688898875 56799999999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeecCCcC----
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 413 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~---- 413 (489)
||+|||+..+. .+..|..+|+.+|.||++... ..+. +|++ ..++.. +..+|....
T Consensus 305 ya~GD~~~~~~----------l~~~A~~~g~~aa~~i~g~~~~~~~~-~p~~--~~~~~~-------~a~vG~~e~~a~~ 364 (464)
T 2eq6_A 305 YAIGDAARPPL----------LAHKAMREGLIAAENAAGKDSAFDYQ-VPSV--VYTSPE-------WAGVGLTEEEAKR 364 (464)
T ss_dssp EECGGGTCSSC----------CHHHHHHHHHHHHHHHTTCCCCCCCC-CCEE--ECSSSE-------EEEEECCHHHHHH
T ss_pred EEEeccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCC-CCeE--EECCCC-------EEEEeCCHHHHHh
Confidence 99999997532 455699999999999996432 1344 5643 222211 445554321
Q ss_pred ---cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHh-HHHHHHHhcCCCCC--hhhhcCCCcHH
Q 011267 414 ---ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEF-QLLPTLARSQPFVD--KAKLQQASSVE 473 (489)
Q Consensus 414 ---~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~ 473 (489)
+... . ......+.+++++ +++|+|+++++..+.++ ..+..+++.+.+++ ...++.|||+.
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~ 444 (464)
T 2eq6_A 365 AGYKVKVGKFPLAASGRALTLGGAEGMVKVVGDEETDLLLGVFIVGPQAGELIAEAALALEMGATLTDLALTVHPHPTLS 444 (464)
T ss_dssp TTCCEEEEEEEGGGCHHHHHTSCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTT
T ss_pred cCCCEEEEEEEcCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCcCCCCChH
Confidence 1111 0 0112457777776 69999999877777665 45566788888886 34468899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|++..+++++..
T Consensus 445 e~~~~~~~~~~~ 456 (464)
T 2eq6_A 445 ESLMEAAEAFHK 456 (464)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999876543
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-41 Score=346.01 Aligned_cols=317 Identities=19% Similarity=0.284 Sum_probs=238.7
Q ss_pred HHHC-CcEEEeCCcEEEEeCCCCEEEeC---C-----CeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHH
Q 011267 130 YKEK-GIEMIYQDPVTSIDIEKQTLITN---S-----GKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (489)
Q Consensus 130 ~~~~-~i~~~~~~~V~~id~~~~~v~~~---~-----g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~ 200 (489)
+++. +++++.+ ++..++. ++|.+. + +.++.||+||||||++|.. |.++|. +.+. +.+.+
T Consensus 117 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~~~~~~~~~~d~lViATGs~p~~-p~i~G~--~~~~------~~~~~ 184 (495)
T 2wpf_A 117 FNDTEGLDFFLG-WGSLESK--NVVVVRETADPKSAVKERLQADHILLATGSWPQM-PAIPGI--EHCI------SSNEA 184 (495)
T ss_dssp HHHCTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEECC-CCCTTG--GGCE------EHHHH
T ss_pred HhcCCCeEEEEe-EEEEeeC--CEEEEeecCCccCCCCeEEEcCEEEEeCCCCcCC-CCCCCc--cccc------cHHHH
Confidence 4566 9999987 5777764 567765 4 6789999999999999874 544442 2222 22333
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
......+++++|||+|++|+|+|..|.++ |.+|+++++.+++++. +++++.+.+.+.+++.||++++ ++.|+++.
T Consensus 185 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~l~~~GV~i~~-~~~v~~i~ 262 (495)
T 2wpf_A 185 FYLPEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG-FDETIREEVTKQLTANGIEIMT-NENPAKVS 262 (495)
T ss_dssp TTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT-SCHHHHHHHHHHHHHTTCEEEE-SCCEEEEE
T ss_pred HhhhhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc-cCHHHHHHHHHHHHhCCCEEEe-CCEEEEEE
Confidence 33334578999999999999999999999 9999999999999974 8999999999999999999999 99999998
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
.++++. ..|.+.+|+++++|.||+|+|++|++++ ++.+|++.+ +|+|.||+++||+.|+|||+|||+..+
T Consensus 263 ~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~~t~~~~IyA~GD~~~~~------ 335 (495)
T 2wpf_A 263 LNTDGS-KHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFSRTNVPNIYAIGDITDRL------ 335 (495)
T ss_dssp ECTTSC-EEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTCBCSSTTEEECGGGGCSC------
T ss_pred EcCCce-EEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc------
Confidence 653333 4688889989999999999999999974 688899886 577999999999999999999999632
Q ss_pred ccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecCCcCc-------EEE-E------
Q 011267 355 TARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I------ 418 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~~~-~------ 418 (489)
..+..|..+|+.+|.||++... ..|..+|+ ...++.+ +..+|....+ ..+ .
T Consensus 336 ----~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vGl~e~~a~~~~~~~~v~~~~~~~~ 402 (495)
T 2wpf_A 336 ----MLTPVAINEGAALVDTVFGNKPRKTDHTRVAS--AVFSIPP-------IGTCGLIEEVAAKEFEKVAVYMSSFTPL 402 (495)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCEE--EECCSSC-------EEEEECCHHHHHHHSSEEEEEEEEECCT
T ss_pred ----cCHHHHHHHHHHHHHHhcCCCCCcCCCCCCCE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEEecCch
Confidence 2566799999999999997432 23444553 2222221 4556654221 111 1
Q ss_pred -----ccCCCcE-EEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 419 -----GNFDPKI-ATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 419 -----~~~~~~~-~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
......+ .++.++ +++|+|+++++.++.++... ..++..+.+++ . ..++.|||+.|++..++
T Consensus 403 ~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 475 (495)
T 2wpf_A 403 MHNISGSKYKKFVAKIVTNHSDGTVLGVHLLGDGAPEIIQAVGVCLRLNAKISDFYNTIGVHPTSAEELCSMR 475 (495)
T ss_dssp HHHHHSCTTCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGGGSCC
T ss_pred hhhhhcCCCcEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCChHHHHHHHH
Confidence 1112347 777775 69999999877777775544 55678888876 2 44688999999988765
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=346.35 Aligned_cols=403 Identities=17% Similarity=0.258 Sum_probs=275.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC----------------CccccCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA----------------LTKGYLFPLD 105 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~------~~----------------l~~~~~~~~~ 105 (489)
.|+++||+|||||+||++||..|++.|. +|+|||+++...... |. +.. +-....
T Consensus 22 ~m~~~dVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~-~g~~~~ 97 (491)
T 3urh_A 22 SMMAYDLIVIGSGPGGYVCAIKAAQLGM---KVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEA-LGVEVA 97 (491)
T ss_dssp ----CCEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGG-GTEECC
T ss_pred hcccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhh-cCcccC
Confidence 3456899999999999999999999987 699999876532110 00 000 000000
Q ss_pred CCCCCCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCCCCCC
Q 011267 106 KKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASRFPEK 180 (489)
Q Consensus 106 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~~p~~ 180 (489)
....++....... ..........++++.+++++.+ ++..++.....+.+.+| .++.||+||||||+.|..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~i--- 173 (491)
T 3urh_A 98 NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQG-TGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVAGI--- 173 (491)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-EEEECSSSEEEEECTTSCEEEEECSEEEECCCEECCCB---
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCCCC---
Confidence 0000000000000 0000001123456779999986 55556666667777777 5799999999999986433
Q ss_pred CCCC--CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHH
Q 011267 181 IGGY--LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258 (489)
Q Consensus 181 ~g~~--~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~ 258 (489)
+|.. .++...+ +.+.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.
T Consensus 174 pg~~~~~~~~~~~----~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~-~d~~~~~~l~~~ 248 (491)
T 3urh_A 174 PGVEVAFDEKTIV----SSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGG-MDGEVAKQLQRM 248 (491)
T ss_dssp TTBCCCCCSSSEE----CHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSS-SCHHHHHHHHHH
T ss_pred CCcccccCCeeEE----ehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecccccccc-CCHHHHHHHHHH
Confidence 3322 2222222 23333333456899999999999999999999999999999999999984 899999999999
Q ss_pred HHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCC
Q 011267 259 YQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQ 330 (489)
Q Consensus 259 l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~ 330 (489)
+++.||++++ +++|++++..++ .+ .+.+.+ | +++++|.||+|+|++|++++ ++.+|++.+ +|+|.||++
T Consensus 249 l~~~gV~v~~-~~~v~~i~~~~~-~~-~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 325 (491)
T 3urh_A 249 LTKQGIDFKL-GAKVTGAVKSGD-GA-KVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRH 325 (491)
T ss_dssp HHHTTCEEEC-SEEEEEEEEETT-EE-EEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTT
T ss_pred HHhCCCEEEE-CCeEEEEEEeCC-EE-EEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCC
Confidence 9999999999 999999986433 22 355542 4 57999999999999999987 788899886 567999999
Q ss_pred CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeec
Q 011267 331 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFG 409 (489)
Q Consensus 331 ~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G 409 (489)
+||+.|+|||+|||+..+. .+..|..+|+.+|.+|++... ..+..+|+ ...++.. +..+|
T Consensus 326 ~~t~~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~~~~p~-------~a~vG 386 (491)
T 3urh_A 326 FQTSIAGVYAIGDVVRGPM----------LAHKAEDEGVAVAEIIAGQAGHVNYDVIPG--VVYTQPE-------VASVG 386 (491)
T ss_dssp CBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTTSCCCCCTTCCCE--EECSSSC-------EEEEE
T ss_pred CCCCCCCEEEEEecCCCcc----------chhHHHHHHHHHHHHHcCCCcccCCCCCCE--EEEccCC-------eEEEe
Confidence 9999999999999996442 456799999999999996432 12344554 3322221 44555
Q ss_pred CCcC-------cEE--EE--c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hh
Q 011267 410 DNVG-------ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AK 465 (489)
Q Consensus 410 ~~~~-------~~~--~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~ 465 (489)
.... +.. .. . .....+.++.++ +++|+|+++++.++.++... ..+|..+.+++ . ..
T Consensus 387 lte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 466 (491)
T 3urh_A 387 KTEEELKAAGVAYKIGKFPFTANGRARAMLQTDGFVKILADKETDRVLGGHIIGFGAGEMIHEIAVLMEFGGSSEDLGRT 466 (491)
T ss_dssp CCHHHHHHTTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred CCHHHHHhCCCCEEEEEEecCcchhhhcCCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcC
Confidence 5432 111 10 0 012346666665 59999999877777776655 45678888876 3 34
Q ss_pred hcCCCcHHHHHHHHHccCCc
Q 011267 466 LQQASSVEEALEIARAALPV 485 (489)
Q Consensus 466 ~~~~~~~~e~~~~~~~~~~~ 485 (489)
++.|||+.|+++.|++++..
T Consensus 467 ~~~hPt~~e~~~~~~~~~~~ 486 (491)
T 3urh_A 467 CHAHPTMSEAVKEAALSTFF 486 (491)
T ss_dssp CCCSSCTTHHHHHHHHHHHC
T ss_pred ccCCCChHHHHHHHHHHhhh
Confidence 58899999999999887654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-42 Score=354.95 Aligned_cols=317 Identities=18% Similarity=0.241 Sum_probs=239.3
Q ss_pred HHHC-CcEEEeCCcEEEEeCCCCEEEe-----CCC---eEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHH
Q 011267 130 YKEK-GIEMIYQDPVTSIDIEKQTLIT-----NSG---KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL 200 (489)
Q Consensus 130 ~~~~-~i~~~~~~~V~~id~~~~~v~~-----~~g---~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~ 200 (489)
+++. +++++.+ ++..++. +++.+ .+| .++.||+||||||+.|. .|.++|. +. +.+ .+.+
T Consensus 113 l~~~~gv~~~~g-~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviAtGs~p~-~p~i~g~--~~---~~~---~~~~ 180 (490)
T 1fec_A 113 FADTEGLTFHQG-FGALQDN--HTVLVRESADPNSAVLETLDTEYILLATGSWPQ-HLGIEGD--DL---CIT---SNEA 180 (490)
T ss_dssp HHTSTTEEEEES-EEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCCEEEC-CCCSBTG--GG---CBC---HHHH
T ss_pred HhcCCCcEEEEe-EEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEeCCCCCC-CCCCCCc--cc---eec---HHHH
Confidence 4567 9999987 5777876 45555 366 68999999999999987 4544442 22 222 2333
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
......+++++|||+|++|+|+|..|.++ |.+|+++++.+++++ .+++++.+.+.+.+++.||++++ ++.|+++.
T Consensus 181 ~~~~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~GV~i~~-~~~v~~i~ 258 (490)
T 1fec_A 181 FYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRT-HENPAKVT 258 (490)
T ss_dssp TTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEE-TCCEEEEE
T ss_pred hhhhhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCccc-ccCHHHHHHHHHHHHhCCCEEEe-CCEEEEEE
Confidence 33334578999999999999999999999 999999999999998 48999999999999999999999 99999998
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
.++++. ..|.+++|+++++|.||+|+|++|+++ + ++.+|++.+ +|+|.||+++||+.|+|||+|||+..+
T Consensus 259 ~~~~~~-~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~~t~~~~IyA~GD~~~~~------ 331 (490)
T 1fec_A 259 KNADGT-RHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRV------ 331 (490)
T ss_dssp ECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSC------
T ss_pred EcCCCE-EEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCCccCCCCEEEEeccCCCc------
Confidence 654333 367888998999999999999999987 4 788999886 677999999999999999999999632
Q ss_pred ccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeecccccCCCcceeeeeecCCcCc-------EEE-E------
Q 011267 355 TARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE-------TIE-I------ 418 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~-------~~~-~------ 418 (489)
..+..|..+|+.+|.||++... ..|..+|+ ...++.+ +..+|....+ ... .
T Consensus 332 ----~l~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~~~~~~~-------~a~vG~~e~~a~~~~~~~~~~~~~~~~~ 398 (490)
T 1fec_A 332 ----MLTPVAINEGAAFVDTVFANKPRATDHTKVAC--AVFSIPP-------MGVCGYVEEDAAKKYDQVAVYESSFTPL 398 (490)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSSCCCCCCCSSCCE--EECCSSC-------EEEEECCHHHHHHHCSEEEEEEEEECCH
T ss_pred ----cCHHHHHHHHHHHHHHhcCCCCCcCCCCCccE--EEECCCC-------eEEEeCCHHHHHhcCCCEEEEEeecChh
Confidence 2566799999999999997432 23444553 2222222 4556654221 111 0
Q ss_pred -----ccCCCcEE-EEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHHHHHH
Q 011267 419 -----GNFDPKIA-TFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEALEIAR 480 (489)
Q Consensus 419 -----~~~~~~~~-~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~~~~~ 480 (489)
......+. ++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.|||+.|++..++
T Consensus 399 ~~~~~~~~~~~~~~kli~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~ 471 (490)
T 1fec_A 399 MHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 471 (490)
T ss_dssp HHHHHSCTTCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred hhhhhcCCCeEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHhccccCCCCHHHHHHHHH
Confidence 11124477 77776 69999999877777775544 55678888875 2 34688999999998765
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=340.01 Aligned_cols=390 Identities=19% Similarity=0.245 Sum_probs=269.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC---------------CccccCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA---------------LTKGYLFPLDKKP 108 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~------~~---------------l~~~~~~~~~~~~ 108 (489)
+++||+|||||+||++||.+|++.|. +|+|||++.. .... |. ....+-.......
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKEL-GGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCC---eEEEEcCCCC-CCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 45899999999999999999999876 7999999742 1000 00 0000000000000
Q ss_pred CCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC
Q 011267 109 ARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (489)
Q Consensus 109 ~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~ 185 (489)
.++..+..... ..........+++.+++++.+ ++..++. +++.+ +|.++.||+||+|||++|. .|.++|.
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~g~-- 151 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKG-FARFVDA--KTLEV-NGETITADHILIATGGRPS-HPDIPGV-- 151 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CCEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCCSTTG--
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecC--CEEEE-CCEEEEeCEEEECCCCCCC-CCCCCCc--
Confidence 00000000000 000000112346679999987 5566765 56777 7788999999999999886 4544442
Q ss_pred CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
....+. +.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus 152 ---~~~~~~---~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~ 224 (450)
T 1ges_A 152 ---EYGIDS---DGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP-SFDPMISETLVEVMNAEGPQ 224 (450)
T ss_dssp ---GGSBCH---HHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHSCE
T ss_pred ---cceecH---HHhhhhhhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhh-hhhHHHHHHHHHHHHHCCCE
Confidence 122222 33333334578999999999999999999999999999999999887 48999999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCCCCCeEEec
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 342 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~G 342 (489)
+++ +++|++++.++++. ..+.+++|+++++|.||+|+|++|+++ + ++.+|++.+ +|+|.||+++||+.|+|||+|
T Consensus 225 i~~-~~~v~~i~~~~~~~-~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~~t~~~~IyA~G 302 (450)
T 1ges_A 225 LHT-NAIPKAVVKNTDGS-LTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 302 (450)
T ss_dssp EEC-SCCEEEEEECTTSC-EEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECS
T ss_pred EEe-CCEEEEEEEeCCcE-EEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCCccCCCCEEEEe
Confidence 999 99999998654443 367888998999999999999999987 3 688899886 567999999999999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC------
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 413 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------ 413 (489)
||+..+ ..+..|..+|+.+|.||++... ..|..+|+. .|..+. +..+|....
T Consensus 303 D~~~~~----------~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~~~------~a~vG~~e~~a~~~~ 363 (450)
T 1ges_A 303 DNTGAV----------ELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTV---VFSHPP------IGTVGLTEPQAREQY 363 (450)
T ss_dssp GGGTSC----------CCHHHHHHHHHHHHHHHHTTCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHH
T ss_pred ccCCCC----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCCc------eEEEeCCHHHHHhcC
Confidence 998642 2556799999999999997432 234556642 222111 344443211
Q ss_pred ---cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHHH-HHHhcCCCCC-h-hhhcCCCcHH
Q 011267 414 ---ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLLP-TLARSQPFVD-K-AKLQQASSVE 473 (489)
Q Consensus 414 ---~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~ 473 (489)
..... ......+.++.++ +++|+|+++++.++.++.... .+++.+.+++ . ..++.|||++
T Consensus 364 g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~ 443 (450)
T 1ges_A 364 GDDQVKVYKSSFTAMYTAVTTHRQPCRMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAA 443 (450)
T ss_dssp CGGGEEEEEEEEECHHHHTSSSCCEEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSG
T ss_pred CCCcEEEEEEECchhhHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCChH
Confidence 11110 1112336666665 699999998776777766554 4578888776 2 4468899999
Q ss_pred HHHHH
Q 011267 474 EALEI 478 (489)
Q Consensus 474 e~~~~ 478 (489)
|++..
T Consensus 444 e~~~~ 448 (450)
T 1ges_A 444 EEFVT 448 (450)
T ss_dssp GGGGS
T ss_pred HHHHh
Confidence 98764
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=334.17 Aligned_cols=402 Identities=17% Similarity=0.229 Sum_probs=278.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCcccc------------------------CC---
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGY------------------------LF--- 102 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~------------------------~~--- 102 (489)
+++||+|||||+||++||.+|++.|. +|+|||+++...-. ..+...+ +.
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~gG~-~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g 77 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKGKEGK-TALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHG 77 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBCTTSS-BCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCCccCCC-CCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999999999999999999987 79999998632110 0000000 00
Q ss_pred -CCCCCCCCCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCCCC
Q 011267 103 -PLDKKPARLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 103 -~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~~~ 176 (489)
.......+++...... ..........++++.+++++.+ ++..++.....+...+| .++.||+||+|||+.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~ 156 (476)
T 3lad_A 78 ISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEG-HGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPVE 156 (476)
T ss_dssp EECSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-EEEECSTTCEEEECTTSCEEEECCSCEEECCCEEECC
T ss_pred cccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCCC
Confidence 0000000000000000 0000000113445679999986 55667777777777777 579999999999998864
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~ 256 (489)
+|. ++.+.+.+.+ ...+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.
T Consensus 157 ~~~-~~~~~~~v~~------~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~ 228 (476)
T 3lad_A 157 IPP-APVDQDVIVD------STGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLP-AVDEQVAKEAQ 228 (476)
T ss_dssp CTT-SCCCSSSEEE------HHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST-TSCHHHHHHHH
T ss_pred CCC-CCCCcccEEe------chhhhccccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc-ccCHHHHHHHH
Confidence 433 2222333332 333333334678999999999999999999999999999999999998 48999999999
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQ 330 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~ 330 (489)
+.+++.||++++ +++|++++.+++ .+ .+.+.++ +++++|.||+|+|++|++++ ++.+|++.+ +|+|.||++
T Consensus 229 ~~l~~~Gv~v~~-~~~v~~i~~~~~-~~-~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~ 305 (476)
T 3lad_A 229 KILTKQGLKILL-GARVTGTEVKNK-QV-TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDY 305 (476)
T ss_dssp HHHHHTTEEEEE-TCEEEEEEECSS-CE-EEEEESSSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTT
T ss_pred HHHHhCCCEEEE-CCEEEEEEEcCC-EE-EEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCC
Confidence 999999999999 999999986433 33 4666554 67999999999999999874 678888886 567999999
Q ss_pred CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC-CCCCcCCceeeecccccCCCcceeeeeec
Q 011267 331 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT-HTYDYLPYFYSRVFEYEGSPRKVWWQFFG 409 (489)
Q Consensus 331 ~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~G 409 (489)
+||+.|+|||+|||+..+. .+..|..+|+.+|.||++... ..+..+|+ .. |..+ .+..+|
T Consensus 306 ~~t~~~~Iya~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~p~--~~-~~~~------~~a~vG 366 (476)
T 3lad_A 306 CATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHKAQMNYDLIPA--VI-YTHP------EIAGVG 366 (476)
T ss_dssp SBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCCCCCCTTCCCE--EE-CSSS------EEEEEE
T ss_pred cccCCCCEEEEEccCCCcc----------cHHHHHHHHHHHHHHhcCCCcccCCCCCCE--EE-ECcC------CEEEee
Confidence 9999999999999996432 455699999999999997432 23444554 22 3221 144555
Q ss_pred CCcC-------cEE--EE--c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hh
Q 011267 410 DNVG-------ETI--EI--G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AK 465 (489)
Q Consensus 410 ~~~~-------~~~--~~--~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~ 465 (489)
.... +.. .. . .....+.++.++ +++|+|+++++.++.++... ..+|..+.+++ . ..
T Consensus 367 lte~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~ 446 (476)
T 3lad_A 367 KTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMM 446 (476)
T ss_dssp CCHHHHHHTTCCEEEEEEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTS
T ss_pred CCHHHHHhcCCCEEEEEEeccccchheecCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCcHHHHhcC
Confidence 5432 111 11 0 012346666654 59999999877777776655 45678888876 3 44
Q ss_pred hcCCCcHHHHHHHHHccCCcc
Q 011267 466 LQQASSVEEALEIARAALPVE 486 (489)
Q Consensus 466 ~~~~~~~~e~~~~~~~~~~~~ 486 (489)
++.|||+.|+++.|++++..+
T Consensus 447 ~~~hPt~~e~~~~~~~~~~~~ 467 (476)
T 3lad_A 447 VFAHPALSEALHEAALAVSGH 467 (476)
T ss_dssp CCCSSCSHHHHHHHHHHHTTC
T ss_pred ccCCCChHHHHHHHHHHHhcc
Confidence 588999999999999876543
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=341.72 Aligned_cols=391 Identities=18% Similarity=0.288 Sum_probs=269.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C---CC------------C--ccccCCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R---PA------------L--TKGYLFPLDKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~---~~------------l--~~~~~~~~~~~~~ 109 (489)
+++||+|||||+||++||.+|++.|. +|+|||++.. .-. + |. + ...+-........
T Consensus 3 ~~~dVvIIGgG~aGl~aA~~l~~~g~---~V~liE~~~~-GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 3 QHFDLIAIGGGSGGLAVAEKAAAFGK---RVALIESKAL-GGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT-THHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCC---cEEEEcCCCC-CCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 46899999999999999999999876 7999999742 100 0 00 0 0000000000000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
++..+..... ..........+++.+++++.+ ++..++. ++|.+ +|.++.||+||+|||+.|. .|.++|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~~--~~v~~-~g~~~~~d~lviAtGs~p~-~p~i~G~--- 150 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDG-HARFVDA--HTIEV-EGQRLSADHIVIATGGRPI-VPRLPGA--- 150 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEE-TTEEEEEEEEEECCCEEEC-CCSCTTG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEe-EEEEccC--CEEEE-CCEEEEcCEEEECCCCCCC-CCCCCCc---
Confidence 0000000000 000000122346679999987 5666764 56777 7788999999999999886 3444442
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
....+ .+.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++. +++++.+.+.+.+++.||++
T Consensus 151 --~~~~~---~~~~~~~~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~-~~~~~~~~l~~~l~~~gv~i 224 (463)
T 2r9z_A 151 --ELGIT---SDGFFALQQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQ-FDPLLSATLAENMHAQGIET 224 (463)
T ss_dssp --GGSBC---HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHTTCEE
T ss_pred --cceec---HHHHhhhhccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccc-cCHHHHHHHHHHHHHCCCEE
Confidence 11222 3333333345789999999999999999999999999999999998874 89999999999999999999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEec
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 342 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~G 342 (489)
++ +++|++++.++++ ..|.+++|+ ++++|.||+|+|++|++++ ++++|++.+ +|+|.||+++||+.|+|||+|
T Consensus 225 ~~-~~~v~~i~~~~~~--~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G 301 (463)
T 2r9z_A 225 HL-EFAVAALERDAQG--TTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQNTNVPGVYALG 301 (463)
T ss_dssp ES-SCCEEEEEEETTE--EEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTSBCSSTTEEECG
T ss_pred Ee-CCEEEEEEEeCCe--EEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCCccCCCCEEEEe
Confidence 99 9999999854333 468888998 8999999999999999873 578888876 577999999999999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC---CCCCcCCceeeecccccCCCcceeeeeecCCcC------
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT---HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG------ 413 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~---~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~------ 413 (489)
||+..+ ..+..|..+|+.+|.||++... ..|..+|+. .|..+. +..+|....
T Consensus 302 D~~~~~----------~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~~p~~---~~~~~~------~a~vGl~e~~a~~~~ 362 (463)
T 2r9z_A 302 DITGRD----------QLTPVAIAAGRRLAERLFDGQSERKLDYDNIPTV---VFAHPP------LSKVGLSEPEARERL 362 (463)
T ss_dssp GGGTSC----------CCHHHHHHHHHHHHHHHHSCCTTCCCCCSSCCEE---ECCSSC------EEEEECCHHHHHHHH
T ss_pred ecCCCc----------ccHHHHHHHHHHHHHHHcCCCCcccCCCCCCCEE---EeCCCC------eEEEcCCHHHHHhcC
Confidence 998632 2566799999999999997432 334556642 222211 334443211
Q ss_pred --cEEEE------------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHH
Q 011267 414 --ETIEI------------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEE 474 (489)
Q Consensus 414 --~~~~~------------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e 474 (489)
..... ......+.+++++ +++|+|++++...+.++... ..++..+.+++ . ..++.|||++|
T Consensus 363 g~~~~~~~~~~~~~~~~~~~~~~~~~~klv~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e 442 (463)
T 2r9z_A 363 GDVLTVYETSFTPMRYALNEHGPKTAMKLVCAGPEQRVVGVHVIGDGADEMLQGFAVAVKMGATKADFDNTVAIHPGSAE 442 (463)
T ss_dssp CSCEEEEEEEECCGGGTTSSSCCCEEEEEEEETTTTEEEEEEEESTTGGGTSHHHHHHHHTTCBHHHHHTSCCCSSSSGG
T ss_pred CCCEEEEEEEcccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhcCccCCCCHHH
Confidence 11110 1112346777765 69999999866667665555 45578888775 2 44688999999
Q ss_pred HHHHHH
Q 011267 475 ALEIAR 480 (489)
Q Consensus 475 ~~~~~~ 480 (489)
++..++
T Consensus 443 ~~~~~~ 448 (463)
T 2r9z_A 443 ELVTLK 448 (463)
T ss_dssp GGGCCC
T ss_pred HHHHHH
Confidence 988754
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-40 Score=340.10 Aligned_cols=396 Identities=19% Similarity=0.227 Sum_probs=271.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC--C-C--C--------------CCccccCCCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY--E-R--P--------------ALTKGYLFPLDKKPA 109 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y--~-~--~--------------~l~~~~~~~~~~~~~ 109 (489)
+.++||+|||||+||++||..|++.|. +|+|||++....- + . | .....+-........
T Consensus 18 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~liE~~~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 94 (478)
T 3dk9_A 18 VASYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF 94 (478)
T ss_dssp EEECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 346899999999999999999999987 6999997742100 0 0 0 000000000000000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCC--CCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFP--EKIGGY 184 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p--~~~g~~ 184 (489)
.+........ ..........+++.+++++.+ ++..++.....+. .++.++.||+||+|||+.|..++ .++|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~~~~~~~~v~-~~g~~~~~d~lviAtG~~p~~p~~~~i~G-- 170 (478)
T 3dk9_A 95 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRG-HAAFTSDPKPTIE-VSGKKYTAPHILIATGGMPSTPHESQIPG-- 170 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEECSCSSCEEE-ETTEEEECSCEEECCCEEECCCCTTTSTT--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEe-EEEEeeCCeEEEE-ECCEEEEeeEEEEccCCCCCCCCcCCCCC--
Confidence 0000000000 000000112345679999986 6777777667777 46778999999999999886431 3333
Q ss_pred CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCc
Q 011267 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (489)
Q Consensus 185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv 264 (489)
..... +.+.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++.||
T Consensus 171 ---~~~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~~~~~l~~~gv 243 (478)
T 3dk9_A 171 ---ASLGI---TSDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR-SFDSMISTNCTEELENAGV 243 (478)
T ss_dssp ---GGGSB---CHHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTC
T ss_pred ---CceeE---chHHhhchhhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCcccc-ccCHHHHHHHHHHHHHCCC
Confidence 22222 2334433334579999999999999999999999999999999999987 5899999999999999999
Q ss_pred EEEEcCceEEEEEeCCCCcEEEEEeCC---C----cEEEcCEEEEccCCCCCCc-h-hhhcCCeec-CCcEEeCCCCCCC
Q 011267 265 KFVKVGASIKNLEAGSDGRVAAVKLED---G----STIDADTIVIGIGAKPTVS-P-FERVGLNSS-VGGIQVDGQFRTR 334 (489)
Q Consensus 265 ~~~~~~~~v~~i~~~~~~~v~~v~~~~---g----~~i~aD~vi~a~G~~p~~~-~-~~~~gl~~~-~g~i~vd~~~~t~ 334 (489)
++++ ++.|++++..+++....+.+.+ | +++++|.||+|+|++|+++ + ++.+|++.+ +|+|.||+++||+
T Consensus 244 ~i~~-~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~ 322 (478)
T 3dk9_A 244 EVLK-FSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTN 322 (478)
T ss_dssp EEET-TEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTCBCS
T ss_pred EEEe-CCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCcccC
Confidence 9999 9999999865555233567765 2 5799999999999999987 4 788899885 5779999999999
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC-C--CCCCcCCceeeecccccCCCcceeeeeecCC
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ-T--HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 411 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~-~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~ 411 (489)
.|+|||+|||+..+. .+..|..+|+.+|.||++.. . ..|..+|+. .|..+. +..+|..
T Consensus 323 ~~~IyA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~~---~~~~p~------~a~vGlt 383 (478)
T 3dk9_A 323 VKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYKEDSKLDYNNIPTV---VFSHPP------IGTVGLT 383 (478)
T ss_dssp STTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHHSCCTTCCCCCTTCCEE---ECCSSC------EEEEECC
T ss_pred CCCEEEEEecCCCCc----------cHhHHHHHHHHHHHHHcCCCCcccCCCCCCCeE---EECCCc------eEEeeCC
Confidence 999999999995432 45668999999999999752 2 244555642 332221 3445543
Q ss_pred cC---------cEEEE----c--------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC--hhh
Q 011267 412 VG---------ETIEI----G--------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD--KAK 465 (489)
Q Consensus 412 ~~---------~~~~~----~--------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~ 465 (489)
.. ..... . +....+.++.++ +++|+|+++++.++.++... ..++..+.+++ ...
T Consensus 384 e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~ 463 (478)
T 3dk9_A 384 EDEAIHKYGIENVKTYSTSFTPMYHAVTKRKTKCVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNT 463 (478)
T ss_dssp HHHHHHHHCGGGEEEEEEEECCGGGGGCSSCCCEEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTS
T ss_pred HHHHHhhCCCccEEEEEeecCcchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhc
Confidence 21 01110 0 111346666654 59999999877777776655 45678888876 344
Q ss_pred hcCCCcHHHHHHH
Q 011267 466 LQQASSVEEALEI 478 (489)
Q Consensus 466 ~~~~~~~~e~~~~ 478 (489)
++.|||+.|++..
T Consensus 464 ~~~hPt~~e~~~~ 476 (478)
T 3dk9_A 464 VAIHPTSSEELVT 476 (478)
T ss_dssp CCCSSSSGGGGGS
T ss_pred ccCCCChHHHHHh
Confidence 6889999998864
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-39 Score=333.48 Aligned_cols=394 Identities=16% Similarity=0.217 Sum_probs=268.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C-CCCccccC-----------------CCC--CC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R-PALTKGYL-----------------FPL--DK 106 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~-~~l~~~~~-----------------~~~--~~ 106 (489)
.++||||||||+||++||.+|++.|. +|+|||++. .... + +.-++.++ +.. ..
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~-~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~ 79 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA-LGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVAS 79 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEccCC-CCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCC
Confidence 46899999999999999999999986 799999953 2100 0 00000000 000 00
Q ss_pred CCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 107 KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 107 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
...++..+..... ........+++++.+++++.+..+ .++ .+++.+.+ .++.||+||||||++|..+|..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~-~~~--~~~v~v~~-~~~~~d~lviATGs~p~~~~~~~~- 154 (458)
T 1lvl_A 80 PRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK-VLD--GKQVEVDG-QRIQCEHLLLATGSSSVELPMLPL- 154 (458)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE-EEE--TTEEEETT-EEEECSEEEECCCEEECCBTTBCC-
T ss_pred CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEE-Ecc--CCEEEEee-EEEEeCEEEEeCCCCCCCCCCCCc-
Confidence 0000000000000 000000124567789999987543 455 46788866 779999999999999864432331
Q ss_pred CCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcC
Q 011267 184 YLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNG 263 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~G 263 (489)
+ ..+ .+..+ .......+++++|||+|++|+|+|..|+++|.+|+++++.+++++ .+++++.+.+.+.+++.|
T Consensus 155 ~-~~v---~~~~~---~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~~l~~~l~~~g 226 (458)
T 1lvl_A 155 G-GPV---ISSTE---ALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP-TYDSELTAPVAESLKKLG 226 (458)
T ss_dssp B-TTE---ECHHH---HTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHHT
T ss_pred c-CcE---ecHHH---HhhhhccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCC
Confidence 1 122 22222 222223578999999999999999999999999999999999998 589999999999999999
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCch--hhhcCCeecCCcEEeCCCCCCCCCCeE
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSP--FERVGLNSSVGGIQVDGQFRTRMPGIF 339 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iy 339 (489)
|++++ +++|++++. +.+ .+...+| +++++|.||+|+|++|++++ ++.+|++.++++|.||+++||+.|+||
T Consensus 227 v~i~~-~~~v~~i~~---~~v-~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~~i~vd~~~~t~~~~Iy 301 (458)
T 1lvl_A 227 IALHL-GHSVEGYEN---GCL-LANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVW 301 (458)
T ss_dssp CEEET-TCEEEEEET---TEE-EEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETTEECCCTTCBCSSTTEE
T ss_pred CEEEE-CCEEEEEEe---CCE-EEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCCEEeECCCCcCCCCCEE
Confidence 99999 999999984 223 3444456 68999999999999999886 688899876338999999999999999
Q ss_pred EeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCC--CCcCCceeeecccccCCCcceeeeeecCCcC----
Q 011267 340 AIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHT--YDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG---- 413 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~---- 413 (489)
|+|||+..+. .+..|..+|+.+|.||++. ... +..+|+ ...++.. +..+|....
T Consensus 302 a~GD~~~~~~----------~~~~A~~~g~~aa~~i~g~-~~~~~~~~~p~--~~~~~p~-------~a~vG~~e~~a~~ 361 (458)
T 1lvl_A 302 AIGDVAGEPM----------LAHRAMAQGEMVAEIIAGK-ARRFEPAAIAA--VCFTDPE-------VVVVGKTPEQASQ 361 (458)
T ss_dssp ECGGGGCSSC----------CHHHHHHHHHHHHHHHTTC-CCCCCCSCCCE--EECSSSE-------EEEEECCHHHHHH
T ss_pred EeeccCCCcc----------cHHHHHHHHHHHHHHhcCC-CccCCCCCCCE--EEECCCC-------eEEEeCCHHHHHH
Confidence 9999997532 4556999999999999963 333 333443 2222211 333443211
Q ss_pred ---cEEE--E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHH-hHHHHHHHhcCCCCC--hhhhcCCCcHH
Q 011267 414 ---ETIE--I----------GNFDPKIATFWID--SGKLKGVLVESGSPEE-FQLLPTLARSQPFVD--KAKLQQASSVE 473 (489)
Q Consensus 414 ---~~~~--~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~ 473 (489)
+... . ......+.+++++ +++|+|+++++..+.+ +..+..++.++.+++ ...++.|||+.
T Consensus 362 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~kl~~d~~~~~ilG~~~vg~~a~e~i~~~~~ai~~~~~~~~l~~~~~~~Pt~~ 441 (458)
T 1lvl_A 362 QGLDCIVAQFPFAANGRAMSLESKSGFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLG 441 (458)
T ss_dssp TTCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTT
T ss_pred cCCCEEEEEEECccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCcCCCCCHH
Confidence 1111 0 0112357777774 6999999986666555 445566788888876 23468899999
Q ss_pred HHHHHHHccCCc
Q 011267 474 EALEIARAALPV 485 (489)
Q Consensus 474 e~~~~~~~~~~~ 485 (489)
|++..|++++..
T Consensus 442 e~~~~a~~~~~~ 453 (458)
T 1lvl_A 442 EAVQEAALRALG 453 (458)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999876543
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-39 Score=334.28 Aligned_cols=398 Identities=20% Similarity=0.251 Sum_probs=270.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC----CCCccccCC----------CC-----CCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER----PALTKGYLF----------PL-----DKKPARLP 112 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~----~~l~~~~~~----------~~-----~~~~~~~~ 112 (489)
+||+|||||+||++||.+|++.|. +|+|||+++..+... +.-++.++. .. .....++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~~g~---~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQLGM---KVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLP 78 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHH
T ss_pred CCEEEECCChhHHHHHHHHHHCCC---eEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHH
Confidence 699999999999999999999976 799999986532110 000000000 00 00000000
Q ss_pred CCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeC-CCeEEeeCcEEecCCCCCCCCCCCCCCCCCce
Q 011267 113 GFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGV 188 (489)
Q Consensus 113 ~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~-~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv 188 (489)
.+..... .........++++.+++++.+. +..++. +.+.+. +|.++.||+||+|||++|.. |..++.+.+++
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~-~~~i~~--~~~~v~~~g~~~~~d~lviAtG~~p~~-~~~~g~~~~~v 154 (455)
T 2yqu_A 79 ALMAHKDKVVQANTQGVEFLFKKNGIARHQGT-ARFLSE--RKVLVEETGEELEARYILIATGSAPLI-PPWAQVDYERV 154 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEESC-EEESSS--SEEEETTTCCEEEEEEEEECCCEEECC-CTTBCCCSSSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeE-EEEecC--CeEEEeeCCEEEEecEEEECCCCCCCC-CCCCCCCcCcE
Confidence 0000000 0000001245566799999874 444544 444443 67789999999999998864 44444333333
Q ss_pred EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 189 HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
.+ .+.+......+++++|||+|++|+|+|..|++.|.+|+++++.+++++. +++.+.+.+.+.+++.||++++
T Consensus 155 ~~------~~~~~~~~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~i~~ 227 (455)
T 2yqu_A 155 VT------STEALSFPEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPT-MDLEVSRAAERVFKKQGLTIRT 227 (455)
T ss_dssp EC------HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHHTCEEEC
T ss_pred ec------hHHhhccccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccc-cCHHHHHHHHHHHHHCCCEEEE
Confidence 32 2222222235789999999999999999999999999999999998884 7999999999999999999999
Q ss_pred cCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEecccc
Q 011267 269 VGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVA 345 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a 345 (489)
+++|++++.++ +. ..+.+++|+++++|.||+|+|.+|++++ ++.+|++.+ +|.+.||+++||+.|+|||+|||+
T Consensus 228 -~~~V~~i~~~~-~~-v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~~t~~~~iya~GD~~ 304 (455)
T 2yqu_A 228 -GVRVTAVVPEA-KG-ARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHLRTRVPHIYAIGDVV 304 (455)
T ss_dssp -SCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTSBCSSTTEEECGGGS
T ss_pred -CCEEEEEEEeC-CE-EEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCcccCCCCEEEEecCC
Confidence 99999998543 23 3567778889999999999999999887 678888876 466999999999999999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCCcC-------cEEE-
Q 011267 346 AFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-------ETIE- 417 (489)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-------~~~~- 417 (489)
..+. .+..|..+|+.+|.||++. ...+.+.+..|...++.. +..+|.... +...
T Consensus 305 ~~~~----------~~~~A~~~g~~aa~~i~~~-~~~~~~~~~p~~~~~~~~-------~a~~G~~~~~a~~~g~~~~~~ 366 (455)
T 2yqu_A 305 RGPM----------LAHKASEEGIAAVEHMVRG-FGHVDYQAIPSVVYTHPE-------IAAVGYTEEELKAQGIPYKVG 366 (455)
T ss_dssp SSCC----------CHHHHHHHHHHHHHHHHHS-CCCCCGGGCCEEECSSSE-------EEEEECCHHHHHHHTCCEEEE
T ss_pred CCcc----------CHHHHHHhHHHHHHHHcCC-CccCCCCCCCEEEEcCCc-------eEEEECCHHHHHHcCCCEEEE
Confidence 7532 4556899999999999974 333333222223322221 334443221 1111
Q ss_pred -E----------ccCCCcEEEEEEE--CCEEEEEEeccCCHHHhH-HHHHHHhcCCCCC--hhhhcCCCcHHHHHHHHHc
Q 011267 418 -I----------GNFDPKIATFWID--SGKLKGVLVESGSPEEFQ-LLPTLARSQPFVD--KAKLQQASSVEEALEIARA 481 (489)
Q Consensus 418 -~----------~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~ 481 (489)
. ......+.+++++ +++|+|++++...+.++. .+..++.++.+++ ...+..|||+.|++..+++
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~~~~~~~~~~~~~Pt~~e~~~~~~~ 446 (455)
T 2yqu_A 367 KFPYSASGRARAMGETEGFIKVLAHAKTDRILGVHGIGARVGDVLAEAALALFFKASAEDLGRAPHAHPSLSEILKEAAL 446 (455)
T ss_dssp EEEGGGCHHHHHHTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCTHHHHHHHHH
T ss_pred EEEcccchHHHhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHHHHHHHH
Confidence 0 0112457777775 699999998666665544 4455678888886 2446889999999999987
Q ss_pred cCC
Q 011267 482 ALP 484 (489)
Q Consensus 482 ~~~ 484 (489)
++.
T Consensus 447 ~~~ 449 (455)
T 2yqu_A 447 AAW 449 (455)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=344.12 Aligned_cols=395 Identities=19% Similarity=0.266 Sum_probs=275.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------CC--------------CccccCCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------PA--------------LTKGYLFPLDKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~------~~--------------l~~~~~~~~~~~~~ 109 (489)
.++||+|||||++|++||..|++.|. +|+|||++. ..... |. ....+-........
T Consensus 4 ~~~DVvVIGaG~aGl~aA~~la~~G~---~V~liEk~~-~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (463)
T 4dna_A 4 FDYDLFVIGGGSGGVRSGRLAAALGK---KVAIAEEFR-YGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRF 79 (463)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEE
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC---EEEEEeCCC-CCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 46899999999999999999999987 799999943 21000 00 00000000000000
Q ss_pred CCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEe-CCCeEEeeCcEEecCCCCCCCCCCCCCCCC
Q 011267 110 RLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLIT-NSGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (489)
Q Consensus 110 ~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~-~~g~~i~yd~lvlATG~~~~~~p~~~g~~~ 185 (489)
++........ .........++++.+++++.+ ++..++ .+.+.+ .++..+.||+||+|||+.|...|..+|.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g-~~~~i~--~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~-- 154 (463)
T 4dna_A 80 DWAKLVAAKEQEIARLEGLYRKGLANAGAEILDT-RAELAG--PNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGH-- 154 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEES-CEEESS--SSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTG--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEee--CCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCc--
Confidence 0000000000 000001123345569999986 666655 467777 5788899999999999987623443442
Q ss_pred CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
....+ .+.+......+++++|||+|++|+|+|..+.+.|.+|+++++.+++++ .+++++.+.+.+.+++.||+
T Consensus 155 ---~~~~~---~~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~-~~~~~~~~~l~~~l~~~Gv~ 227 (463)
T 4dna_A 155 ---ELCIT---SNEAFDLPALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILS-RFDQDMRRGLHAAMEEKGIR 227 (463)
T ss_dssp ---GGCBC---HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHTTCE
T ss_pred ---ccccc---HHHHhhhhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcccc-ccCHHHHHHHHHHHHHCCCE
Confidence 22222 333333334589999999999999999999999999999999999887 48999999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEE-eCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEe
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAI 341 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~-~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~ 341 (489)
+++ ++.|++++.++++. ..|. +++|+ +++|.||+|+|++|++++ ++.+|++.+ +|+|.||+++||++|+|||+
T Consensus 228 i~~-~~~v~~i~~~~~~~-~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~iya~ 304 (463)
T 4dna_A 228 ILC-EDIIQSVSADADGR-RVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSRTSTPGIYAL 304 (463)
T ss_dssp EEC-SCCEEEEEECTTSC-EEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCBCSSTTEEEC
T ss_pred EEC-CCEEEEEEEcCCCE-EEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCCCCCCCEEEE
Confidence 999 99999998654444 3678 88887 999999999999999987 788999886 57799999999999999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCCcCc-----
Q 011267 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE----- 414 (489)
Q Consensus 342 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~----- 414 (489)
|||+..+. .+..|..+|+.+|.||++.... .+..+|+. .|..+. +..+|....+
T Consensus 305 GD~~~~~~----------~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p~------~a~vG~te~~a~~~~ 365 (463)
T 4dna_A 305 GDVTDRVQ----------LTPVAIHEAMCFIETEYKNNPTSPDHDLIATA---VFSQPE------IGTVGITEEEAARKF 365 (463)
T ss_dssp SGGGSSCC----------CHHHHHHHHHHHHHHHHSSCCCCCCCSCCCEE---ECSSSC------EEEEECCHHHHHHHS
T ss_pred EecCCCCC----------ChHHHHHHHHHHHHHHcCCCCcccCCCCCCEE---EECCCC------eEEecCCHHHHHHcC
Confidence 99997432 4566999999999999975433 34445542 233221 4455554321
Q ss_pred --EE-EE---cc--------CCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHH
Q 011267 415 --TI-EI---GN--------FDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEA 475 (489)
Q Consensus 415 --~~-~~---~~--------~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~ 475 (489)
.. .. .. ....+.++.++ +++|+|+++++.++.++... ..++..+.+++ . ..++.|||+.|+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~ 445 (463)
T 4dna_A 366 QEIEVYRAEFRPMKATLSGRKEKTIMKLVVNAADRKVVGAHILGHDAGEMAQLLGISLRAGCTKDDFDRTMAVHPTAAEE 445 (463)
T ss_dssp SEEEEEEEEECCTTHHHHCCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSGGG
T ss_pred CCeEEEEEeccccchhhcCCCceEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhcccCCCCHHHH
Confidence 11 00 00 12346666665 59999999877777776655 45578888876 3 446889999999
Q ss_pred HHHHHcc
Q 011267 476 LEIARAA 482 (489)
Q Consensus 476 ~~~~~~~ 482 (489)
+..++..
T Consensus 446 ~~~~~~~ 452 (463)
T 4dna_A 446 LVTMYQP 452 (463)
T ss_dssp GTCCCSC
T ss_pred HHHHhhh
Confidence 9887743
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=333.41 Aligned_cols=400 Identities=18% Similarity=0.227 Sum_probs=271.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-CCCccc---------------------------c
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER-PALTKG---------------------------Y 100 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~-~~l~~~---------------------------~ 100 (489)
..++||+|||||+||++||..|++.|. +|+|||+.+..++.. ..+-.. +
T Consensus 4 ~~~~DvvVIG~G~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~ 80 (488)
T 3dgz_A 4 QQSFDLLVIGGGSGGLACAKEAAQLGK---KVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHY 80 (488)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999999986 799999743322211 111000 0
Q ss_pred CCCCC-CCCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCCC
Q 011267 101 LFPLD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCTA 174 (489)
Q Consensus 101 ~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~~ 174 (489)
-.... ....++........ ..........+++.+++++.+ ++..+++....+.+.+| .++.||+||||||+.|
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g-~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p 159 (488)
T 3dgz_A 81 GWEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNI-KASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP 159 (488)
T ss_dssp TCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECC-EEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEE
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCC
Confidence 00000 00000000000000 000000112345678999875 67777766667777777 5799999999999998
Q ss_pred CCCCC-CCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHH
Q 011267 175 SRFPE-KIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (489)
Q Consensus 175 ~~~p~-~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~ 253 (489)
.. |. ++|.... .. +.+.+......+++++|||+|++|+|+|..|.++|.+|+++++. .+++ .+++++.+
T Consensus 160 ~~-p~~i~G~~~~----~~---~~~~~~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~ 229 (488)
T 3dgz_A 160 RY-PTQVKGALEY----GI---TSDDIFWLKESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS-IPLR-GFDQQMSS 229 (488)
T ss_dssp CC-CSSCBTHHHH----CB---CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHH
T ss_pred CC-CCCCCCcccc----cC---cHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC-cccc-cCCHHHHH
Confidence 74 43 4442111 11 23333333346789999999999999999999999999999986 4555 47999999
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--EEEcCEEEEccCCCCCCch--hhhcCCeec--CCc
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VGG 324 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~aD~vi~a~G~~p~~~~--~~~~gl~~~--~g~ 324 (489)
.+.+.+++.||++++ ++.++++...+++.+ .+.+.+ |+ ++++|.||+|+|++|++++ ++.+|++.+ +|+
T Consensus 230 ~l~~~l~~~gv~~~~-~~~v~~i~~~~~~~~-~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~ 307 (488)
T 3dgz_A 230 LVTEHMESHGTQFLK-GCVPSHIKKLPTNQL-QVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQK 307 (488)
T ss_dssp HHHHHHHHTTCEEEE-TEEEEEEEECTTSCE-EEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCC
T ss_pred HHHHHHHHCCCEEEe-CCEEEEEEEcCCCcE-EEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCe
Confidence 999999999999999 999999986444443 355443 54 4899999999999999987 678899876 577
Q ss_pred EEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcc
Q 011267 325 IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRK 402 (489)
Q Consensus 325 i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~ 402 (489)
|.||+++||++|+|||+|||+... ...+..|..+|+.+|.||++.... .+..+|+.+ |..+
T Consensus 308 i~vd~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~~---~~~p----- 370 (488)
T 3dgz_A 308 IIVDAQEATSVPHIYAIGDVAEGR---------PELTPTAIKAGKLLAQRLFGKSSTLMDYSNVPTTV---FTPL----- 370 (488)
T ss_dssp BCCCTTSBCSSTTEEECGGGBTTC---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEEE---CSSS-----
T ss_pred EeECCCCccCCCCEEEeEEecCCC---------CcchhHHHHHHHHHHHHHcCCCCccCCCCCCCEEE---ECCC-----
Confidence 999999999999999999998522 125567999999999999975432 345566532 2221
Q ss_pred eeeeeecCCcC---------cE-EEEc------------cCCCcEEEEEEE---CCEEEEEEeccCCHHHhHHH-HHHHh
Q 011267 403 VWWQFFGDNVG---------ET-IEIG------------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLAR 456 (489)
Q Consensus 403 ~~~~~~G~~~~---------~~-~~~~------------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~ 456 (489)
.+..+|.... .. +... +....+.++.++ +++|+|++++..++.++... ..+|.
T Consensus 371 -~~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~ 449 (488)
T 3dgz_A 371 -EYGCVGLSEEEAVALHGQEHVEVYHAYYKPLEFTVADRDASQCYIKMVCMREPPQLVLGLHFLGPNAGEVTQGFALGIK 449 (488)
T ss_dssp -EEEEEECCHHHHHHHHCGGGEEEEEEECCCHHHHHTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHH
T ss_pred -CeEEEeCCHHHHHhhCCCCcEEEEEccccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHH
Confidence 1344554321 01 1110 002346676665 49999999877777776655 45678
Q ss_pred cCCCCC--hhhhcCCCcHHHHHHHHHcc
Q 011267 457 SQPFVD--KAKLQQASSVEEALEIARAA 482 (489)
Q Consensus 457 ~~~~~~--~~~~~~~~~~~e~~~~~~~~ 482 (489)
++.+++ ...++.|||++|++..+...
T Consensus 450 ~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 477 (488)
T 3dgz_A 450 CGASYAQVMQTVGIHPTCSEEVVKLHIS 477 (488)
T ss_dssp TTCBHHHHHTSCCCSSCSTHHHHTCCEE
T ss_pred CCCCHHHHhccccCCCChHHHHHHHHHH
Confidence 888876 34468899999999987644
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-40 Score=343.98 Aligned_cols=401 Identities=17% Similarity=0.209 Sum_probs=252.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCc-----------cccCCCC-----CCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALT-----------KGYLFPL-----DKKPARLPG 113 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~~~l~-----------~~~~~~~-----~~~~~~~~~ 113 (489)
.||+||||||+||+.||.++++.|. +|+|||+.....+. +..+- |.++... ........+
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~~G~---kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~G 118 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAAHGA---RVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYG 118 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHTTTC---CEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcC
Confidence 5899999999999999999999987 69999976532221 11110 1000000 000000000
Q ss_pred Cccc-cCCCC--------------CCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeC----CCeEEeeCcEEecCCCCC
Q 011267 114 FHTC-VGSGG--------------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN----SGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 114 ~~~~-~~~~~--------------~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~----~g~~i~yd~lvlATG~~~ 174 (489)
+... ...++ .......+++.+++++.+ ...-+++..-.|... +++++.++++|||||++|
T Consensus 119 i~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G-~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P 197 (542)
T 4b1b_A 119 WKFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYING-LAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRP 197 (542)
T ss_dssp EEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECE-EEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEE
T ss_pred cccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEee-eEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCC
Confidence 0000 00000 000123356679998876 555566544344333 345799999999999999
Q ss_pred CCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHH
Q 011267 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (489)
Q Consensus 175 ~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~ 254 (489)
..+|..++ .+...+ +++.++..-..+++++|||||++|+|+|..++++|.+||++.+ +++|+ .+|+++++.
T Consensus 198 ~~P~~~~~---~~~~~~----ts~~~l~l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~-~~~L~-~~D~ei~~~ 268 (542)
T 4b1b_A 198 HIPDDVEG---AKELSI----TSDDIFSLKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVR-SIVLR-GFDQQCAVK 268 (542)
T ss_dssp CCCSSSBT---HHHHCB----CHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEES-SCSST-TSCHHHHHH
T ss_pred CCCCcccC---CCcccc----CchhhhccccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecc-ccccc-ccchhHHHH
Confidence 74433222 111111 3455655556789999999999999999999999999999987 46776 489999999
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCc-EEeCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGG-IQVDGQ 330 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~-i~vd~~ 330 (489)
+.+.|++.||++++ ++.++++...+ +. ..|.+.+++++.+|.|++|+|++||++. ++.+|+..+ +++ +.+|++
T Consensus 269 l~~~l~~~gi~~~~-~~~v~~~~~~~-~~-~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~ 345 (542)
T 4b1b_A 269 VKLYMEEQGVMFKN-GILPKKLTKMD-DK-ILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHL 345 (542)
T ss_dssp HHHHHHHTTCEEEE-TCCEEEEEEET-TE-EEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTT
T ss_pred HHHHHHhhcceeec-ceEEEEEEecC-Ce-EEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEecccc
Confidence 99999999999999 99999998643 33 3578889989999999999999999986 567788775 344 578999
Q ss_pred CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeee
Q 011267 331 FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFF 408 (489)
Q Consensus 331 ~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~ 408 (489)
+||++|+|||+|||+..... ....|..+|+.++.++++.... .|..+|+. .|..+- +..+
T Consensus 346 ~~Ts~p~IyAiGDv~~~~p~---------La~~A~~eg~~aa~~i~g~~~~~~d~~~iP~~---vft~Pe------iA~V 407 (542)
T 4b1b_A 346 SCTNIPSIFAVGDVAENVPE---------LAPVAIKAGEILARRLFKDSDEIMDYSYIPTS---IYTPIE------YGAC 407 (542)
T ss_dssp SBCSSTTEEECTTSBTTCCC---------CHHHHHHHHHHHHHHHHSCCCCCCCCSSCCEE---ECSSSC------EEEE
T ss_pred ccccCCCeEEeccccCCchh---------HHHHHHHHHHHHHHHHhcCCCcccCCCCCceE---EeCCCC------eEEE
Confidence 99999999999999964211 2344889999999999975443 35556653 343321 3333
Q ss_pred cCCcCc---------E-EEE--------------------------ccCCCcEEEEE-EE--CCEEEEEEeccCCHHHhH
Q 011267 409 GDNVGE---------T-IEI--------------------------GNFDPKIATFW-ID--SGKLKGVLVESGSPEEFQ 449 (489)
Q Consensus 409 G~~~~~---------~-~~~--------------------------~~~~~~~~~~~-~~--~~~~~g~~~~~~~~~~~~ 449 (489)
|....+ + +.. ......+.++. ++ +++|+|+++++.++.++.
T Consensus 408 GlTE~eA~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~vKli~~~~~t~~ILGa~ivG~~A~ElI 487 (542)
T 4b1b_A 408 GYSEEKAYELYGKSNVEVFLQEFNNLEISAVHRQKHIRAQKDEYDLDVSSTCLAKLVCLKNEDNRVIGFHYVGPNAGEVT 487 (542)
T ss_dssp ECCHHHHHHHHCTTTEEEEEC-----------------------------CCCEEEEEETTTTTBEEEEEEESTTHHHHH
T ss_pred eCCHHHHHHhCCCCcEEEEEeeccchhhhhhhhhhhhhcccccccccCCCceEEEEEEEeCCCCEEEEEEEECCCHHHHH
Confidence 432110 0 000 00012345554 33 489999999877888877
Q ss_pred HHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHHccCCc
Q 011267 450 LLPT-LARSQPFVD--KAKLQQASSVEEALEIARAALPV 485 (489)
Q Consensus 450 ~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~ 485 (489)
.... +|..+.+++ ...++.|||++|++..+..++.+
T Consensus 488 ~~~alAi~~~~t~~dl~~~i~~HPTlsE~l~~~~~t~~~ 526 (542)
T 4b1b_A 488 QGMALALRLKVKKKDFDNCIGIHPTDAESFMNLFVTISS 526 (542)
T ss_dssp HHHHHHHHTCCBHHHHHHC--------------------
T ss_pred HHHHHHHHcCCCHHHHhccCCcCCCHHHHHHHHHHHHHc
Confidence 6655 468888876 34468999999999999887654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-39 Score=334.84 Aligned_cols=399 Identities=20% Similarity=0.230 Sum_probs=270.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-CCCC-CCcc---------------------------c
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-YERP-ALTK---------------------------G 99 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-y~~~-~l~~---------------------------~ 99 (489)
+..+||+|||||+||++||.+|++.|. +|+|||+....+ -... .+-. .
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~ 83 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVLNGA---RVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAA 83 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---EEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999987 799999532111 0000 0000 0
Q ss_pred cCCCCCC-CCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe-EEeeCcEEecCCCCC
Q 011267 100 YLFPLDK-KPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGCTA 174 (489)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~-~i~yd~lvlATG~~~ 174 (489)
+-..... ...++..+..... ..........+++.+++++.+ .+..++.....+.+.+|. ++.||+||||||+.|
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p 162 (483)
T 3dgh_A 84 YGWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYING-LGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP 162 (483)
T ss_dssp TTBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE
T ss_pred cCcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc
Confidence 0000000 0000000000000 000000112345678998875 666777776677777774 799999999999988
Q ss_pred CCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHH
Q 011267 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (489)
Q Consensus 175 ~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~ 254 (489)
. .|.++|.+. ... +.+.+......+++++|||+|++|+|+|..|.++|.+|+++++. .+++ .+++++.+.
T Consensus 163 ~-~p~i~G~~~----~~~---~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~~ 232 (483)
T 3dgh_A 163 R-YPDIPGAVE----YGI---TSDDLFSLDREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS-IVLR-GFDQQMAEL 232 (483)
T ss_dssp C-CCSSTTHHH----HCB---CHHHHTTCSSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-CSST-TSCHHHHHH
T ss_pred C-CCCCCCccc----ccC---cHHHHhhhhhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC-CCCc-ccCHHHHHH
Confidence 6 454444211 111 23333333345789999999999999999999999999999884 6666 479999999
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-----EEEcCEEEEccCCCCCCchh--hhcCCeecCCcEEe
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADTIVIGIGAKPTVSPF--ERVGLNSSVGGIQV 327 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-----~i~aD~vi~a~G~~p~~~~~--~~~gl~~~~g~i~v 327 (489)
+.+.+++.||++++ ++.|++++..+++.+ .|.+.+++ ++++|.||+|+|++|+++++ +.+|++.++|+|.|
T Consensus 233 l~~~l~~~Gv~i~~-~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~G~i~v 310 (483)
T 3dgh_A 233 VAASMEERGIPFLR-KTVPLSVEKQDDGKL-LVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQKDKIPV 310 (483)
T ss_dssp HHHHHHHTTCCEEE-TEEEEEEEECTTSCE-EEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBTTBBCC
T ss_pred HHHHHHhCCCEEEe-CCEEEEEEEcCCCcE-EEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccCCEEEE
Confidence 99999999999999 999999986555544 46666543 79999999999999999886 88899887788999
Q ss_pred CCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceee
Q 011267 328 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWW 405 (489)
Q Consensus 328 d~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~ 405 (489)
|+++||+.|+|||+|||+... ...+..|..+|+.+|.||++.... .|..+|+. .|..+ .+
T Consensus 311 d~~~~t~~~~IyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~~---~~~~p------~~ 372 (483)
T 3dgh_A 311 DSQEATNVANIYAVGDIIYGK---------PELTPVAVLAGRLLARRLYGGSTQRMDYKDVATT---VFTPL------EY 372 (483)
T ss_dssp CTTCBCSSTTEEECSTTBTTS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCEE---ECSSS------EE
T ss_pred CcCCccCCCCEEEEEcccCCC---------CccHHHHHHHHHHHHHHHcCCCCCcCCCCCCCEE---EECCC------cc
Confidence 999999999999999998521 125566999999999999975432 35556653 22211 13
Q ss_pred eeecCCcC---------cEE-EE----c--------cCCCcEEEEEEE---CCEEEEEEeccCCHHHhHHH-HHHHhcCC
Q 011267 406 QFFGDNVG---------ETI-EI----G--------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLARSQP 459 (489)
Q Consensus 406 ~~~G~~~~---------~~~-~~----~--------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~~~~~ 459 (489)
..+|.... ... .. . .....+.++.++ +++|+|+++++.++.++... ..+|.++.
T Consensus 373 a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~ 452 (483)
T 3dgh_A 373 ACVGLSEEDAVKQFGADEIEVFHGYYKPTEFFIPQKSVRYCYLKAVAERHGDQRVYGLHYIGPVAGEVIQGFAAALKSGL 452 (483)
T ss_dssp EEEECCHHHHHHHHCGGGEEEEEEECCCGGGTTTTCCCTTCEEEEEEESSTTCBEEEEEEEETTHHHHHHHHHHHHHTTC
T ss_pred EEEeCCHHHHHhhCCCCCEEEEEEeecchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHHHCCC
Confidence 34444321 011 10 0 011336666554 48999999877777776655 45678888
Q ss_pred CCC--hhhhcCCCcHHHHHHHHHc
Q 011267 460 FVD--KAKLQQASSVEEALEIARA 481 (489)
Q Consensus 460 ~~~--~~~~~~~~~~~e~~~~~~~ 481 (489)
+++ ...++.|||++|++..+..
T Consensus 453 t~~~l~~~~~~hPt~~e~~~~~~~ 476 (483)
T 3dgh_A 453 TINTLINTVGIHPTTAEEFTRLAI 476 (483)
T ss_dssp BHHHHHTSCCCSSCSGGGGGGCCC
T ss_pred CHHHHhhcccCCCChHHHHHHHHh
Confidence 876 3446889999999987654
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-40 Score=345.20 Aligned_cols=394 Identities=21% Similarity=0.273 Sum_probs=272.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC---C---CC--------------CccccCCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE---R---PA--------------LTKGYLFPLDKKPA 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~---~---~~--------------l~~~~~~~~~~~~~ 109 (489)
.++||+|||||+||++||.+|++.|. +|+|||++. .+.. + |. ....+-........
T Consensus 25 ~~~DVvVIGgG~aGl~aA~~la~~G~---~V~liEk~~-~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 100 (484)
T 3o0h_A 25 FDFDLFVIGSGSGGVRAARLAGALGK---RVAIAEEYR-IGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIF 100 (484)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCcC---EEEEEeCCC-CCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 36899999999999999999999987 799999943 2110 0 00 00000000000000
Q ss_pred CCCCCcccc---CCCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeC-CCeEEeeCcEEecCCCCCCCCCCCCCCCC
Q 011267 110 RLPGFHTCV---GSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN-SGKLLKYGSLIVATGCTASRFPEKIGGYL 185 (489)
Q Consensus 110 ~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~-~g~~i~yd~lvlATG~~~~~~p~~~g~~~ 185 (489)
++....... ..........++++.+++++.+ ++..++. +.+.+. ++.++.||++|+|||+.|...|..+|..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g-~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~- 176 (484)
T 3o0h_A 101 NWEKLVAAKNKEISRLEGLYREGLQNSNVHIYES-RAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSD- 176 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEES-CEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEe-EEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc-
Confidence 000000000 0000001123445679999986 7777774 567776 7788999999999999876234444422
Q ss_pred CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
.+... +.+......+++++|||+|++|+|+|..+.+.|.+|+++++.+++++. +++.+.+.+.+.+++.||+
T Consensus 177 -~~~~~------~~~~~~~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~-~~~~~~~~l~~~l~~~Gv~ 248 (484)
T 3o0h_A 177 -LCLTS------NEIFDLEKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRN-FDYDLRQLLNDAMVAKGIS 248 (484)
T ss_dssp -GSBCT------TTGGGCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCE
T ss_pred -ccccH------HHHHhHHhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccc-cCHHHHHHHHHHHHHCCCE
Confidence 12111 122222245789999999999999999999999999999999998874 8999999999999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEec
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIG 342 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~G 342 (489)
+++ ++.|++++.++ +.+ .|.+.+|+++++|.||+|+|++|++++ ++.+|++.+ +|+|.||+++||+.|+|||+|
T Consensus 249 i~~-~~~V~~i~~~~-~~v-~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~t~~~~Iya~G 325 (484)
T 3o0h_A 249 IIY-EATVSQVQSTE-NCY-NVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKMTTNVSHIWAVG 325 (484)
T ss_dssp EES-SCCEEEEEECS-SSE-EEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTSBCSSTTEEECG
T ss_pred EEe-CCEEEEEEeeC-CEE-EEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCCCCCCCCEEEEE
Confidence 999 99999998643 344 688899999999999999999999987 788899886 467999999999999999999
Q ss_pred cccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCcceeeeeecCCcCc------
Q 011267 343 DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGE------ 414 (489)
Q Consensus 343 D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~~------ 414 (489)
||+..+. .+..|..+|+.+|.||++.... .+..+|+. .|..+. +..+|....+
T Consensus 326 D~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~---~~~~p~------~a~vGlte~~a~~~g~ 386 (484)
T 3o0h_A 326 DVTGHIQ----------LTPVAIHDAMCFVKNAFENTSTTPDYDLITTA---VFSQPE------IGTVGLSEEDALHRYK 386 (484)
T ss_dssp GGGTSCC----------CHHHHHHHHHHHHHHHHC---CCCCCTTCCEE---ECCSSC------EEEEECCHHHHHHHCS
T ss_pred ecCCCCc----------CHHHHHHHHHHHHHHHcCCCCCcCCCCCCcEE---EECCCC------EEEeeCCHHHHHHcCC
Confidence 9997432 4566999999999999975433 34445542 333221 4556654321
Q ss_pred EEEE--c-----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhhcCCCcHHHHH
Q 011267 415 TIEI--G-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKLQQASSVEEAL 476 (489)
Q Consensus 415 ~~~~--~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~~~~~~~~e~~ 476 (489)
-+.. . +....+.++.++ +++|+|++++..++.++... ..++..+.+++ . ..++.|||+.|++
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ilG~~~~g~~a~~~i~~~~~ai~~~~t~~~l~~~~~~hPt~~e~~ 466 (484)
T 3o0h_A 387 RVEIYRTVFRPMRNVLSGSPEKMFMKLVVDGESRIVVGAHVLGENAGEIAQLIGISLKGKLTKDIFDKTMAVHPTMSEEL 466 (484)
T ss_dssp EEEEEEEEECCHHHHHHTCCCCEEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCSSCSGGGG
T ss_pred CEEEEEecCCcchhhccCCCCcEEEEEEEECCCCEEEEEEEECcCHHHHHHHHHHHHHCCCCHHHHhccccCCCChHHHH
Confidence 0110 0 012346666665 59999999877777776655 45578888876 3 4468899999999
Q ss_pred HHHHc
Q 011267 477 EIARA 481 (489)
Q Consensus 477 ~~~~~ 481 (489)
..++.
T Consensus 467 ~~~~~ 471 (484)
T 3o0h_A 467 VTMYK 471 (484)
T ss_dssp GCCCS
T ss_pred HHHhh
Confidence 88763
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-39 Score=336.29 Aligned_cols=401 Identities=19% Similarity=0.240 Sum_probs=269.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccccC-------------------------C
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGYL-------------------------F 102 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~~~~-------------------------~ 102 (489)
+..+||+|||||+||++||..|++.|. +|+|||+++..++... .+-..++ +
T Consensus 30 ~~~~DVvVIGgGpaGl~aA~~la~~G~---~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~ 106 (519)
T 3qfa_A 30 SYDYDLIIIGGGSGGLAAAKEAAQYGK---KVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNY 106 (519)
T ss_dssp SCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999986 6999998653221110 0000000 0
Q ss_pred C--CC-CCCCCCCCCccccC---CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe--EEeeCcEEecCCCCC
Q 011267 103 P--LD-KKPARLPGFHTCVG---SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK--LLKYGSLIVATGCTA 174 (489)
Q Consensus 103 ~--~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~--~i~yd~lvlATG~~~ 174 (489)
. .. ....++........ ..........+++.+++++.+ ++..+++....+...+|+ ++.||+||||||++|
T Consensus 107 g~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g-~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p 185 (519)
T 3qfa_A 107 GWKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENA-YGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP 185 (519)
T ss_dssp TBCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEE-EEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc
Confidence 0 00 00000000000000 000000112345679999875 678888877777777775 799999999999998
Q ss_pred CCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHH
Q 011267 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQR 254 (489)
Q Consensus 175 ~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~ 254 (489)
.. |.++|... ...+ .+.+......+++++|||+|++|+|+|..|+++|.+|+++++. .+++ .+++++.+.
T Consensus 186 ~~-p~i~G~~~----~~~t---~~~~~~l~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~-~~d~~~~~~ 255 (519)
T 3qfa_A 186 RY-LGIPGDKE----YCIS---SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANK 255 (519)
T ss_dssp CC-CCCTTHHH----HCBC---HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHHH
T ss_pred CC-CCCCCccC----ceEc---HHHHhhhhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc-cccc-cCCHHHHHH
Confidence 63 44444211 1112 3333333345788999999999999999999999999999985 6666 479999999
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCC---CcE-EEEEeCCC-c--EEEcCEEEEccCCCCCCch--hhhcCCeec--CC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSD---GRV-AAVKLEDG-S--TIDADTIVIGIGAKPTVSP--FERVGLNSS--VG 323 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v-~~v~~~~g-~--~i~aD~vi~a~G~~p~~~~--~~~~gl~~~--~g 323 (489)
+.+.+++.||++++ ++.++++...++ +.+ ..+...+| + ++++|.||+|+|++|++++ ++.+|++.+ +|
T Consensus 256 ~~~~l~~~GV~v~~-~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G 334 (519)
T 3qfa_A 256 IGEHMEEHGIKFIR-QFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTG 334 (519)
T ss_dssp HHHHHHHTTCEEEE-SEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTC
T ss_pred HHHHHHHCCCEEEe-CCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCC
Confidence 99999999999999 988888764322 222 22334455 2 5789999999999999986 788899885 47
Q ss_pred cEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCC--CCCcCCceeeecccccCCCc
Q 011267 324 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTH--TYDYLPYFYSRVFEYEGSPR 401 (489)
Q Consensus 324 ~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~--~~~~~p~~~~~~~~~~~~~~ 401 (489)
+|.||+++||++|+|||+|||+... ...+..|..+|+.+|.||++.... .+..+|+ . .|..+-
T Consensus 335 ~I~Vd~~~~Ts~~~IyA~GD~~~g~---------~~~~~~A~~~g~~aa~~i~g~~~~~~~~~~~p~--~-~~~~p~--- 399 (519)
T 3qfa_A 335 KIPVTDEEQTNVPYIYAIGDILEDK---------VELTPVAIQAGRLLAQRLYAGSTVKCDYENVPT--T-VFTPLE--- 399 (519)
T ss_dssp CBCCCTTSBCSSTTEEECGGGBSSS---------CCCHHHHHHHHHHHHHHHHSCCCCCCCCTTCCE--E-ECSSSC---
T ss_pred eEeeCCCCccCCCCEEEEEeccCCC---------CccHHHHHHHHHHHHHHHcCCCCccCCCCcCcE--E-EECCCc---
Confidence 7999999999999999999999422 125667999999999999975432 3444554 2 232211
Q ss_pred ceeeeeecCCcC---------cEEE----Ec---------cCCCcEEEEEEE---CCEEEEEEeccCCHHHhHHH-HHHH
Q 011267 402 KVWWQFFGDNVG---------ETIE----IG---------NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL-PTLA 455 (489)
Q Consensus 402 ~~~~~~~G~~~~---------~~~~----~~---------~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~-~~~~ 455 (489)
+..+|.... .... .. .....+.++.++ +++|+|++++..++.++... ..+|
T Consensus 400 ---~a~vGlte~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Kli~~~~~~~~ilGa~i~g~~a~e~i~~~~~ai 476 (519)
T 3qfa_A 400 ---YGACGLSEEKAVEKFGEENIEVYHSYFWPLEWTIPSRDNNKCYAKIICNTKDNERVVGFHVLGPNAGEVTQGFAAAL 476 (519)
T ss_dssp ---EEEEECCHHHHHHHHCGGGEEEEEEEECCHHHHTTTCCTTTEEEEEEEETTTTCEEEEEEEESTTHHHHHHHHHHHH
T ss_pred ---eEEecCCHHHHHhhCCCCCEEEEEEeccchhhhhhccCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHHHHHH
Confidence 445554321 0110 00 012346677664 48999999877777776655 4567
Q ss_pred hcCCCCC--hhhhcCCCcHHHHHHHHHcc
Q 011267 456 RSQPFVD--KAKLQQASSVEEALEIARAA 482 (489)
Q Consensus 456 ~~~~~~~--~~~~~~~~~~~e~~~~~~~~ 482 (489)
..+.+++ ...++.|||+.|++..+...
T Consensus 477 ~~~~t~~~l~~~~~~hPt~~E~~~~~~~~ 505 (519)
T 3qfa_A 477 KCGLTKKQLDSTIGIHPVCAEVFTTLSVT 505 (519)
T ss_dssp HTTCBHHHHHHSCCCTTCGGGGGGGCCCB
T ss_pred HCCCCHHHHhccccCCCChHHHHHHHHhh
Confidence 8888876 34468899999999887644
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-40 Score=339.09 Aligned_cols=397 Identities=17% Similarity=0.142 Sum_probs=266.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC------C--------------CCccccCCCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER------P--------------ALTKGYLFPLDKKPAR 110 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~------~--------------~l~~~~~~~~~~~~~~ 110 (489)
++||+|||||+||++||.+|++.|. +|+|||+++. ...- | .....+-.+......+
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~~G~---~V~liE~~~~-GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 83 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKKHTD---KVVLIEGGAY-GTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVN 83 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTCS---CEEEEESSCS-SCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCC-CCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccC
Confidence 5899999999999999999999986 7999999752 1100 0 0000000000000000
Q ss_pred CCCCccccC---CCCCCCChhHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 111 LPGFHTCVG---SGGERQTPEWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 111 ~~~~~~~~~---~~~~~~~~~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
+..+..... ..........+... +++++.+ ++...+ .++|.+.++.++.||+||||||++|. .|..++...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g-~a~~~~--~~~v~~~~~~~~~~d~lViATGs~p~-~p~~~~~~~~ 159 (492)
T 3ic9_A 84 GKAVMKRIQTERDRFVGFVVESVESFDEQDKIRG-FAKFLD--EHTLQVDDHSQVIAKRIVIATGSRPN-YPEFLAAAGS 159 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEES-CEEEEE--TTEEEETTTEEEEEEEEEECCCEECC-CCHHHHTTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEE-EEEEec--CCEEEEcCCcEEEeCEEEEccCCCCc-CCCCCCccCC
Confidence 000000000 00000000111111 3445543 333333 46888888899999999999999987 3443332223
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEE
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKF 266 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~ 266 (489)
.+++ ++.+......+++++|||+|++|+|+|..|.++|.+|+++++.+++++ .+++++.+.+.+.+++. |++
T Consensus 160 ~v~t------~~~~~~~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~-~~d~~~~~~l~~~l~~~-V~i 231 (492)
T 3ic9_A 160 RLLT------NDNLFELNDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVAN-LQDEEMKRYAEKTFNEE-FYF 231 (492)
T ss_dssp GEEC------HHHHTTCSSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTT-CCCHHHHHHHHHHHHTT-SEE
T ss_pred cEEc------HHHHhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccc-cCCHHHHHHHHHHHhhC-cEE
Confidence 3332 333433344689999999999999999999999999999999999987 48999999999999988 999
Q ss_pred EEcCceEEEEEeCCCCcEEEEEeC--CC--cEEEcCEEEEccCCCCCCch--hhhcCCeec-CCcEEeC-CCCCCCCCCe
Q 011267 267 VKVGASIKNLEAGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSP--FERVGLNSS-VGGIQVD-GQFRTRMPGI 338 (489)
Q Consensus 267 ~~~~~~v~~i~~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~p~~~~--~~~~gl~~~-~g~i~vd-~~~~t~~~~I 338 (489)
++ ++.|++++..+ +.+ .+.+. +| +++++|.||+|+|++|++++ ++.+|++.+ +|.|.|| +++||+.|+|
T Consensus 232 ~~-~~~v~~i~~~~-~~v-~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~I 308 (492)
T 3ic9_A 232 DA-KARVISTIEKE-DAV-EVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHI 308 (492)
T ss_dssp ET-TCEEEEEEECS-SSE-EEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTE
T ss_pred EE-CCEEEEEEEcC-CEE-EEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCE
Confidence 99 99999998643 343 35554 67 67999999999999999998 788999886 5779999 8999999999
Q ss_pred EEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC-CCC--CCCcCCceeeecccccCCCcceeeeeecCCcC--
Q 011267 339 FAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA-QTH--TYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG-- 413 (489)
Q Consensus 339 ya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~-~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~-- 413 (489)
||+|||+..+. .+..|..+|+.+|.||++. ... .+..+|+ ..|..+ .+..+|....
T Consensus 309 yA~GD~~~~~~----------~~~~A~~~g~~aa~~i~~~~~~~~~~~~~~p~---~~~~~p------~~a~vGlte~~a 369 (492)
T 3ic9_A 309 FVAGDANNTLT----------LLHEAADDGKVAGTNAGAYPVIAQGQRRAPLS---VVFTEP------QVASVGLSLRQI 369 (492)
T ss_dssp EECGGGGTSSC----------SHHHHHHHHHHHHHHHHHTTSCCEECCCCCEE---EECSSS------EEEEEESCHHHH
T ss_pred EEEEecCCCCc----------cHHHHHHHHHHHHHHHcCCCCCcccCCCCCcE---EEECCC------CeEEecCCHHHH
Confidence 99999997532 4567999999999999862 222 2233333 222211 1334444321
Q ss_pred ----------cEE-EEc-----------cCCCcEEEEEEE--CCEEEEEEeccCCHHHhHHH-HHHHhcCCCCC-h-hhh
Q 011267 414 ----------ETI-EIG-----------NFDPKIATFWID--SGKLKGVLVESGSPEEFQLL-PTLARSQPFVD-K-AKL 466 (489)
Q Consensus 414 ----------~~~-~~~-----------~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~-~-~~~ 466 (489)
... ..- .....+.++.++ +++|+|+++++.++.++... ..++..+.+++ . ..+
T Consensus 370 ~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~g~~kli~~~~~~~ilG~~~~g~~a~e~i~~~~~ai~~~~t~~~l~~~~ 449 (492)
T 3ic9_A 370 EDLYADQDAANYVVGQVSFEGQGRSRVMGKNKGLLNVYADRTSGEFLGAEMFGPAAEHIGHLLAWARQQQMTVQAMLTMP 449 (492)
T ss_dssp HHHCSCSSSCCEEEEEEEGGGCHHHHHTTCCCCEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHTTSC
T ss_pred HhccCccCCccEEEEEEEeccchhhhhcCCCcEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCHHHHhhCC
Confidence 010 000 012346666664 59999999977788777655 45678888876 2 446
Q ss_pred cCCCcHHHHHHHHHccCCc
Q 011267 467 QQASSVEEALEIARAALPV 485 (489)
Q Consensus 467 ~~~~~~~e~~~~~~~~~~~ 485 (489)
+.|||+.|+++.|++++.+
T Consensus 450 ~~hPt~~e~~~~a~~~~~~ 468 (492)
T 3ic9_A 450 FYHPVIEEGLRTALRDAQQ 468 (492)
T ss_dssp CCTTCTHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHH
Confidence 8899999999999887544
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-40 Score=340.12 Aligned_cols=300 Identities=21% Similarity=0.280 Sum_probs=227.6
Q ss_pred cCCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCC
Q 011267 46 SFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQ 125 (489)
Q Consensus 46 ~~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (489)
|...++++|||||||+||+++|++|++.++ +|||||+++++.|. |.|+. .... .-.+..+ ...
T Consensus 37 p~~~~KprVVIIGgG~AGl~~A~~L~~~~~---~VtLId~~~~~~~~-PlL~~-va~G-~l~~~~i-----------~~p 99 (502)
T 4g6h_A 37 PQHSDKPNVLILGSGWGAISFLKHIDTKKY---NVSIISPRSYFLFT-PLLPS-APVG-TVDEKSI-----------IEP 99 (502)
T ss_dssp CCSCSSCEEEEECSSHHHHHHHHHSCTTTC---EEEEEESSSEEECG-GGGGG-TTTT-SSCGGGG-----------EEE
T ss_pred CCCCCCCCEEEECCcHHHHHHHHHhhhCCC---cEEEECCCCCcccc-cchhH-Hhhc-cccHHHh-----------hhh
Confidence 345567899999999999999999987654 89999999987664 55542 1111 0000000 000
Q ss_pred ChhHH--HHCCcEEEeCCcEEEEeCCCCEEEeC--------------------CCeEEeeCcEEecCCCCCCCCCCCCCC
Q 011267 126 TPEWY--KEKGIEMIYQDPVTSIDIEKQTLITN--------------------SGKLLKYGSLIVATGCTASRFPEKIGG 183 (489)
Q Consensus 126 ~~~~~--~~~~i~~~~~~~V~~id~~~~~v~~~--------------------~g~~i~yd~lvlATG~~~~~~p~~~g~ 183 (489)
..... .+.+++++.+ +|+.||+++++|++. ++.+++||+||||||+.+.. +.+||.
T Consensus 100 ~~~~~~~~~~~v~~~~~-~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~-~~ipG~ 177 (502)
T 4g6h_A 100 IVNFALKKKGNVTYYEA-EATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNT-FGIPGV 177 (502)
T ss_dssp HHHHHTTCSSCEEEEEE-EEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECC-TTCTTH
T ss_pred HHHHHHhhcCCeEEEEE-EEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccccc-CCccCc
Confidence 11222 2357888874 899999999988763 46689999999999999874 444443
Q ss_pred CCCceEeecCHHHHHHHHHhhc-----------------CCCcEEEECCCHHHHHHHHHHHhCC--------------Cc
Q 011267 184 YLPGVHYIRDVADADALISSLE-----------------KAKKVVVVGGGYIGMEVAAAAVGWK--------------LD 232 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~~-----------------~~~~vvViG~G~~g~e~A~~l~~~g--------------~~ 232 (489)
. +..+.++++.++.++++.+. ...+++|||||++|+|+|..|.+++ .+
T Consensus 178 ~-e~a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~ 256 (502)
T 4g6h_A 178 T-DYGHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQ 256 (502)
T ss_dssp H-HHCEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCE
T ss_pred c-cccCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccce
Confidence 2 23467889888877765431 1236999999999999999987643 57
Q ss_pred EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc----EEEcCEEEEccCCCC
Q 011267 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKP 308 (489)
Q Consensus 233 V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~----~i~aD~vi~a~G~~p 308 (489)
|+++++.+++++ .+++.+++.+.+.|+++||++++ ++.|++++ +++.+......+|+ +|+||.||||+|++|
T Consensus 257 V~lve~~~~il~-~~~~~~~~~~~~~L~~~GV~v~~-~~~v~~v~--~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~ 332 (502)
T 4g6h_A 257 IHLVEALPIVLN-MFEKKLSSYAQSHLENTSIKVHL-RTAVAKVE--EKQLLAKTKHEDGKITEETIPYGTLIWATGNKA 332 (502)
T ss_dssp EEEECSSSSSST-TSCHHHHHHHHHHHHHTTCEEET-TEEEEEEC--SSEEEEEEECTTSCEEEEEEECSEEEECCCEEC
T ss_pred eEEecccccccc-CCCHHHHHHHHHHHHhcceeeec-CceEEEEe--CCceEEEEEecCcccceeeeccCEEEEccCCcC
Confidence 999999999998 48999999999999999999999 99999996 34444455667764 699999999999999
Q ss_pred CC---chhhhcCCeec-CCcEEeCCCCCC-CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 309 TV---SPFERVGLNSS-VGGIQVDGQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 309 ~~---~~~~~~gl~~~-~g~i~vd~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+. ++...++...+ +|+|.||++||| ++|||||+|||+..+.+. ..+.|.+||+.+|+||.+
T Consensus 333 ~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~--------~a~~A~qqg~~~A~ni~~ 398 (502)
T 4g6h_A 333 RPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPP--------TAQVAHQEAEYLAKNFDK 398 (502)
T ss_dssp CHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCC--------CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCC--------chHHHHHHHHHHHHHHHH
Confidence 82 33455566554 578999999999 899999999999866532 567799999999999853
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-41 Score=341.75 Aligned_cols=330 Identities=18% Similarity=0.168 Sum_probs=235.2
Q ss_pred ccccceeeeeecceec--CCCCCceeee---ccccccccccccccc------ccc---CCCCCCcEEEEcCchHHHHHHH
Q 011267 3 SVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVA------YSS---FANENREFVIVGGGNAAGYAAR 68 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~------~~~---~~~~~~~vvIIGgG~AGl~aA~ 68 (489)
..+||||++|||+|+. +|+++|.++. +++++....++..+. ..+ ...+.+||+|||||+||++||.
T Consensus 60 ~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~~v~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~V~IIGgGpAGl~aA~ 139 (456)
T 2vdc_G 60 QATNNFPEICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVIGAGPAGLAAAE 139 (456)
T ss_dssp HHHCSCHHHHHHHCCGGGSGGGGCGGGGSSSCSCCHHHHHHHHHHHHHHHTCCCCCCSCSSCCCCEEEECCSHHHHHHHH
T ss_pred HhhCCCCccccccCCCCcchHHhcccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCCHHHHHHHH
Confidence 5689999999999999 9999999975 566666666665432 211 2245789999999999999999
Q ss_pred HHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEeCCcEEEEeC
Q 011267 69 TFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDI 148 (489)
Q Consensus 69 ~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~~id~ 148 (489)
.|++.|+ +|+|+|+++..... +. +-.+. .+++. ....+..+++++.+++++.++.|.
T Consensus 140 ~L~~~G~---~V~v~e~~~~~GG~---l~--~gip~----~~~~~-------~~~~~~~~~l~~~gv~~~~~~~v~---- 196 (456)
T 2vdc_G 140 ELRAKGY---EVHVYDRYDRMGGL---LV--YGIPG----FKLEK-------SVVERRVKLLADAGVIYHPNFEVG---- 196 (456)
T ss_dssp HHHHHTC---CEEEECSSSSCSTH---HH--HTSCT----TTSCH-------HHHHHHHHHHHHTTCEEETTCCBT----
T ss_pred HHHHCCC---eEEEEeccCCCCCe---ee--ecCCC----ccCCH-------HHHHHHHHHHHHCCcEEEeCCEec----
Confidence 9999987 69999998654211 00 00110 01110 001223466788899999986542
Q ss_pred CCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHH--H----------hhcCCCcEEEECCC
Q 011267 149 EKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALI--S----------SLEKAKKVVVVGGG 216 (489)
Q Consensus 149 ~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~--~----------~~~~~~~vvViG~G 216 (489)
+.+.++++. +.||+||+|||+.+...+.++|.+.++++...++....... . ....+++|+|||+|
T Consensus 197 --~~v~~~~~~-~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG 273 (456)
T 2vdc_G 197 --RDASLPELR-RKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGG 273 (456)
T ss_dssp --TTBCHHHHH-SSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSS
T ss_pred --cEEEhhHhH-hhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCC
Confidence 223333332 57999999999974334566777778877643332222111 1 01357899999999
Q ss_pred HHHHHHHHHHHhCCCc-EEEEccCCcc-hhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC----
Q 011267 217 YIGMEVAAAAVGWKLD-TTIIFPENHL-LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---- 290 (489)
Q Consensus 217 ~~g~e~A~~l~~~g~~-V~lv~~~~~~-l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---- 290 (489)
.+|+|+|..+.+.|.+ |+++++++++ ++. .+.+ .+.+++.||++++ ++.++++.. ++++.++++.
T Consensus 274 ~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~-~~~e-----~~~~~~~Gv~~~~-~~~~~~i~~--~g~v~~v~~~~~~~ 344 (456)
T 2vdc_G 274 DTAMDCVRTAIRQGATSVKCLYRRDRKNMPG-SQRE-----VAHAEEEGVEFIW-QAAPEGFTG--DTVVTGVRAVRIHL 344 (456)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSSCSTTCSS-CHHH-----HHHHHHTTCEEEC-CSSSCCEEE--EEEEETTEEEEEEE
T ss_pred hhHHHHHHHHHHcCCCEEEEEEeCCccCCCC-CHHH-----HHHHHHCCCEEEe-CCCceEEeC--CCcEEEEEEEEEEe
Confidence 9999999999999984 9999998865 443 2222 2457788999999 999988873 3433222221
Q ss_pred --------------CC--cEEEcCEEEEccCCCCCCc--hhhhcCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCc
Q 011267 291 --------------DG--STIDADTIVIGIGAKPTVS--PFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLK 350 (489)
Q Consensus 291 --------------~g--~~i~aD~vi~a~G~~p~~~--~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~ 350 (489)
+| ++++||.||+|+|+.|++. +++.++++.+ +|+|.||++ ++|+.|+|||+|||+..+.
T Consensus 345 ~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~~~g~~- 423 (456)
T 2vdc_G 345 GVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDIVRGAS- 423 (456)
T ss_dssp EEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGGGSSCC-
T ss_pred cccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccccCCch-
Confidence 23 4799999999999999876 7888899876 578999997 9999999999999997543
Q ss_pred cCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 351 MYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 351 ~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|+.+|.+|..
T Consensus 424 ---------~v~~A~~~G~~aA~~i~~ 441 (456)
T 2vdc_G 424 ---------LVVWAIRDGRDAAEGIHA 441 (456)
T ss_dssp ---------SHHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHHH
Confidence 456688899999888863
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-38 Score=334.34 Aligned_cols=401 Identities=17% Similarity=0.219 Sum_probs=264.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCcccc----------C---------------C
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKGY----------L---------------F 102 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~~~----------~---------------~ 102 (489)
...+||+|||||+||++||.+|++.|. +|+|||+....+.... .+...+ + +
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~~g~---~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~ 181 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAKYGA---KTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHF 181 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccEEEECCCccHHHHHHHHHhCCC---eEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhC
Confidence 456899999999999999999999986 7999997422111100 000000 0 0
Q ss_pred CCC--C--CCCCCCCCccccCCC---CCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCCCC
Q 011267 103 PLD--K--KPARLPGFHTCVGSG---GERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATGCT 173 (489)
Q Consensus 103 ~~~--~--~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG~~ 173 (489)
... . ...++..+....... ........+...+++++.+ .+..++.....+...+| .++.||+||||||++
T Consensus 182 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~ 260 (598)
T 2x8g_A 182 GWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNA-KGRLISPHEVQITDKNQKVSTITGNKIILATGER 260 (598)
T ss_dssp TCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECS-EEEEEETTEEEEECTTCCEEEEEEEEEEECCCEE
T ss_pred CccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEE-EEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCC
Confidence 000 0 000000000000000 0000011234568888865 66677766555555667 468999999999998
Q ss_pred CCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHH
Q 011267 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253 (489)
Q Consensus 174 ~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~ 253 (489)
|+ .|.++|... +.+ +.+.+......+++++|||+|++|+|+|..|+++|.+|+++++. .+++ .+++++.+
T Consensus 261 p~-~p~i~G~~~---~~~----~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~-~~d~~~~~ 330 (598)
T 2x8g_A 261 PK-YPEIPGAVE---YGI----TSDDLFSLPYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLR-GFDQQMAE 330 (598)
T ss_dssp EC-CCSSTTHHH---HCE----EHHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSST-TSCHHHHH
T ss_pred CC-CCCCCCccc---ceE----cHHHHhhCccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcC-cCCHHHHH
Confidence 86 444444211 111 12333332345789999999999999999999999999999988 6666 48999999
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeC-----CC---CcE-EEEEeCCCcEEE--cCEEEEccCCCCCCch--hhhcCCee
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAG-----SD---GRV-AAVKLEDGSTID--ADTIVIGIGAKPTVSP--FERVGLNS 320 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~-----~~---~~v-~~v~~~~g~~i~--aD~vi~a~G~~p~~~~--~~~~gl~~ 320 (489)
.+.+.+++.||++++ ++.++++... ++ +.+ ..+.+.+|++++ +|.||+|+|++|++++ ++.+|++.
T Consensus 331 ~~~~~l~~~gv~i~~-~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~ 409 (598)
T 2x8g_A 331 KVGDYMENHGVKFAK-LCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKL 409 (598)
T ss_dssp HHHHHHHHTTCEEEE-TEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCB
T ss_pred HHHHHHHhCCCEEEE-CCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceE
Confidence 999999999999999 9988888532 11 333 223356777655 9999999999999987 57888887
Q ss_pred c-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC--CCCCcCCceeeeccccc
Q 011267 321 S-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT--HTYDYLPYFYSRVFEYE 397 (489)
Q Consensus 321 ~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~--~~~~~~p~~~~~~~~~~ 397 (489)
+ +|+|.||+++||+.|+|||+|||+... ...+..|..+|+.+|.+|++... ..|..+|+.+ |..+
T Consensus 410 ~~~G~i~vd~~~~ts~~~VyA~GD~~~~~---------~~~~~~A~~~g~~aa~~i~~~~~~~~~~~~~p~~~---~~~~ 477 (598)
T 2x8g_A 410 DKNGRVVCTDDEQTTVSNVYAIGDINAGK---------PQLTPVAIQAGRYLARRLFAGATELTDYSNVATTV---FTPL 477 (598)
T ss_dssp CTTSCBCCCTTSBCSSTTEEECGGGBTTS---------CCCHHHHHHHHHHHHHHHHHCCCCCCCCTTCCEEE---CSSS
T ss_pred CCCCcEEeCCCCcCCCCCEEEEeeecCCC---------CccHHHHHHhHHHHHHHHhcCCCcccCCCCCcEEE---ECCC
Confidence 6 577999999999999999999997532 12556799999999999997543 2355566532 2211
Q ss_pred CCCcceeeeeecCCcC---------cEEEE------------c-cCCCcEEEEEEE---CCEEEEEEeccCCHHHhHHH-
Q 011267 398 GSPRKVWWQFFGDNVG---------ETIEI------------G-NFDPKIATFWID---SGKLKGVLVESGSPEEFQLL- 451 (489)
Q Consensus 398 ~~~~~~~~~~~G~~~~---------~~~~~------------~-~~~~~~~~~~~~---~~~~~g~~~~~~~~~~~~~~- 451 (489)
- +..+|.... ..... . +....+.++.++ +++|+|+++++.++.++...
T Consensus 478 ~------~a~vGl~e~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kli~~~~~~~~ilG~~~~g~~a~~~i~~~ 551 (598)
T 2x8g_A 478 E------YGACGLSEEDAIEKYGDKDIEVYHSNFKPLEWTVAHREDNVCYMKLVCRKSDNMRVLGLHVLGPNAGEITQGY 551 (598)
T ss_dssp C------EEEEECCHHHHHHHHCGGGEEEEEEEECCTHHHHTTCCSSCEEEEEEEETTTTTEEEEEEEESTTHHHHHHHH
T ss_pred c------eEEEeCCHHHHHhhCCCCcEEEEEEeccchhHHhhcCCCCcEEEEEEEecCCCCEEEEEEEECCCHHHHHHHH
Confidence 1 334443211 01110 0 012346676664 69999999866667776655
Q ss_pred HHHHhcCCCCC--hhhhcCCCcHHHHHHHHHcc
Q 011267 452 PTLARSQPFVD--KAKLQQASSVEEALEIARAA 482 (489)
Q Consensus 452 ~~~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~ 482 (489)
..+|..+.+++ ...++.|||+.|++..++..
T Consensus 552 ~~ai~~~~t~~~l~~~~~~hPt~~e~~~~~~~~ 584 (598)
T 2x8g_A 552 AVAIKMGATKADFDRTIGIHPTCSETFTTLHVT 584 (598)
T ss_dssp HHHHHTTCBHHHHHHSCCCSSCSGGGGGSCCCB
T ss_pred HHHHHcCCCHHHHhhccccCCCHHHHHHHHHHh
Confidence 45678888876 34468899999999988863
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-39 Score=359.31 Aligned_cols=349 Identities=17% Similarity=0.177 Sum_probs=244.9
Q ss_pred cccccceeeeeecceec--CCCCCceeee---cccccccccccccccc---------cc--------CCCCCCcEEEEcC
Q 011267 2 ASVSNSLSFKHGLSLWC--PQSPSLHRIR---HSSAKNFQRRGFVVAY---------SS--------FANENREFVIVGG 59 (489)
Q Consensus 2 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~---------~~--------~~~~~~~vvIIGg 59 (489)
...+||||++|||+|+. +|.++|+++. +++++....|+..+.. .+ +..+.+||+||||
T Consensus 116 ~~~~n~~p~~~grvCp~~~~Ce~~C~~~~~~~~pv~I~~le~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~VvVIGg 195 (1025)
T 1gte_A 116 IFSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAYSAKIALLGA 195 (1025)
T ss_dssp HHHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHHHHHTCCCCCCTTSCCGGGSCGGGGCCEEEECC
T ss_pred HHhcCChhHhhcCCCCChhhHHhhCccCCCCCCCccHhHHHHHHHHHHHHhCCccccCccccccccCCccCCCEEEEECc
Confidence 35689999999999998 9999999965 5777777777776631 11 0123679999999
Q ss_pred chHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHHCCcEEEe
Q 011267 60 GNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIY 139 (489)
Q Consensus 60 G~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 139 (489)
|+||++||.+|++.|+ . +|+|+|+++..... +. +-.+. ..++. .......+++++.|++++.
T Consensus 196 GpAGl~aA~~L~~~G~-~-~Vtv~E~~~~~GG~---~~--~~ip~----~~~~~-------~~~~~~~~~~~~~gv~~~~ 257 (1025)
T 1gte_A 196 GPASISCASFLARLGY-S-DITIFEKQEYVGGL---ST--SEIPQ----FRLPY-------DVVNFEIELMKDLGVKIIC 257 (1025)
T ss_dssp SHHHHHHHHHHHHTTC-C-CEEEEESSSSCSTH---HH--HTSCT----TTSCH-------HHHHHHHHHHHTTTCEEEE
T ss_pred cHHHHHHHHHHHhcCC-C-cEEEEeCCCCCCcc---cc--ccCCc----ccCCH-------HHHHHHHHHHHHCCcEEEc
Confidence 9999999999999987 2 69999997654321 00 00000 01100 0001224567888999999
Q ss_pred CCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCC-CCceEeecCHHHHHHHHHh----------hcCC
Q 011267 140 QDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGY-LPGVHYIRDVADADALISS----------LEKA 207 (489)
Q Consensus 140 ~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~-~~gv~~~~~~~~~~~~~~~----------~~~~ 207 (489)
++.+. .+.++++++.++.||+||||||+. |+.++..+|.. .+++++..++......... ...+
T Consensus 258 ~~~v~-----~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~ 332 (1025)
T 1gte_A 258 GKSLS-----ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIR 332 (1025)
T ss_dssp SCCBS-----TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCC
T ss_pred ccEec-----cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccC
Confidence 86652 134555555567899999999994 76554333422 3566654332211111000 1235
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc-chhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~-~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
++|+|||||.+|+|+|..+.++|. +|+++++.++ +++ .+++++ +.+++.||++++ ++.++++.. +++++.
T Consensus 333 ~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~-~~~~e~-----~~~~~~Gv~~~~-~~~~~~i~~-~~g~v~ 404 (1025)
T 1gte_A 333 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIR-AVPEEV-----ELAKEEKCEFLP-FLSPRKVIV-KGGRIV 404 (1025)
T ss_dssp SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCC-SCHHHH-----HHHHHTTCEEEC-SEEEEEEEE-ETTEEE
T ss_pred CcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCC-CCHHHH-----HHHHHcCCEEEe-CCCceEEEc-cCCeEE
Confidence 799999999999999999999996 8999999884 444 344443 457788999999 999999975 356666
Q ss_pred EEEeC------CC---------cEEEcCEEEEccCCCCC-Cchhhh-cCCeec-CCcEEeCC-CCCCCCCCeEEeccccc
Q 011267 286 AVKLE------DG---------STIDADTIVIGIGAKPT-VSPFER-VGLNSS-VGGIQVDG-QFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 286 ~v~~~------~g---------~~i~aD~vi~a~G~~p~-~~~~~~-~gl~~~-~g~i~vd~-~~~t~~~~Iya~GD~a~ 346 (489)
.|++. +| +++++|.||+|+|++|+ ..++++ .|++.+ +|.|.||+ ++||+.|+|||+|||+.
T Consensus 405 ~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~~~ 484 (1025)
T 1gte_A 405 AVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVG 484 (1025)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGC
T ss_pred EEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCCCC
Confidence 66553 22 36999999999999864 566666 488886 57799997 89999999999999997
Q ss_pred cCCccCCcccccccHHHHHHHHHHHHHHHhc------C-CCCCCCcCCceee
Q 011267 347 FPLKMYDRTARVEHVDHARQSAQHCIKALLS------A-QTHTYDYLPYFYS 391 (489)
Q Consensus 347 ~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~------~-~~~~~~~~p~~~~ 391 (489)
.+. .+..|..+|+.+|.+|.+ + ....+...||+|+
T Consensus 485 ~~~----------~~~~A~~~G~~aA~~i~~~L~~~~~~~~~~~~~~p~~~~ 526 (1025)
T 1gte_A 485 MAN----------TTVESVNDGKQASWYIHKYIQAQYGASVSAKPELPLFYT 526 (1025)
T ss_dssp SCC----------CHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCCBCCCCC
T ss_pred Cch----------HHHHHHHHHHHHHHHHHHHHHhccCCCcccCcCcccccc
Confidence 543 344577888888888863 1 2224577899998
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-37 Score=297.64 Aligned_cols=293 Identities=22% Similarity=0.310 Sum_probs=207.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
+...||||||||||||++||.+|++.|+ +|+|||++.. .-. ++... ....+|++....+.+......
T Consensus 3 te~~yDvvIIG~GpAGl~aA~~l~~~g~---~V~liE~~~~--gG~------~~~~~--~i~~~p~~~~~~~~~~~~~~~ 69 (312)
T 4gcm_A 3 TEIDFDIAIIGAGPAGMTAAVYASRANL---KTVMIERGIP--GGQ------MANTE--EVENFPGFEMITGPDLSTKMF 69 (312)
T ss_dssp -CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT--TGG------GGGCS--CBCCSTTCSSBCHHHHHHHHH
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCC--CCe------eeccc--ccCCcCCccccchHHHHHHHH
Confidence 3457999999999999999999999987 6999998632 110 11000 001122221111111112223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHHHHhh
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL 204 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~~~~~ 204 (489)
.++.+.+..+..+..+...+.....+...++.++.||+||||||++|+. |.+||.+. .++++. .......
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~-~~ipG~~~~~~~~v~~~------~~~~~~~ 142 (312)
T 4gcm_A 70 EHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKK-IGVPGEQELGGRGVSYC------AVCDGAF 142 (312)
T ss_dssp HHHHHTTCEEEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHHGGG
T ss_pred HHHhhccccccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCc-CCCCChhhhCCccEEee------eccCccc
Confidence 4556677888887777777777778888889999999999999999874 55566432 233332 1122234
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc-
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR- 283 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~- 283 (489)
..+++++|||+|++|+|+|..|+++|.+|+++++.+++++... ...+.+++.++.... ...+......+...
T Consensus 143 ~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 215 (312)
T 4gcm_A 143 FKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRI------LQDRAFKNDKIDFIW-SHTLKSINEKDGKVG 215 (312)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHH------HHHHHHHCTTEEEEC-SEEEEEEEEETTEEE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecccccCcchh------HHHHHHHhcCcceee-ecceeeeeccccccc
Confidence 5689999999999999999999999999999999998876421 223556778888887 77666665332211
Q ss_pred -EEEEEeC--CCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCccccccc
Q 011267 284 -VAAVKLE--DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 360 (489)
Q Consensus 284 -v~~v~~~--~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~ 360 (489)
....... ++..+++|.|++++|..|++.+++..++..++|+|.||+++|||+|+|||+|||+..+.. .
T Consensus 216 ~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~~~~Ts~pgIyA~GDv~~~~~~---------~ 286 (312)
T 4gcm_A 216 SVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLR---------Q 286 (312)
T ss_dssp EEEEEETTTCCEEEEECSEEEECSCEEESCGGGGGGTCBCTTSCBCCCTTSBCSSTTEEECSTTBSCSCC---------S
T ss_pred cceeeeecCCceeEEeeeeEEeecCCCcCchhHHhcceecCCCeEeeCCCCccCCCCEEEEeecCCCcch---------H
Confidence 1111122 335799999999999999999999999988888899999999999999999999864321 3
Q ss_pred HHHHHHHHHHHHHHHh
Q 011267 361 VDHARQSAQHCIKALL 376 (489)
Q Consensus 361 ~~~A~~~g~~~a~~l~ 376 (489)
+..|..+|+.||.++.
T Consensus 287 ~~~A~~~G~~AA~~i~ 302 (312)
T 4gcm_A 287 IVTATGDGSIAAQSAA 302 (312)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4558889999988875
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-37 Score=304.10 Aligned_cols=298 Identities=19% Similarity=0.260 Sum_probs=219.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
++++||+|||||+||+++|.+|++.|+ +|+|||+++........ ..+ .......++++............+
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 73 (335)
T 2zbw_A 3 ADHTDVLIVGAGPTGLFAGFYVGMRGL---SFRFVDPLPEPGGQLTA-----LYP-EKYIYDVAGFPKVYAKDLVKGLVE 73 (335)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSCHHHHH-----TCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred CCcCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCeeec-----cCC-CceeeccCCCCCCCHHHHHHHHHH
Confidence 356899999999999999999999876 79999998754311000 000 000011111110000000111223
Q ss_pred HHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCC---CCCCCCCCCCC-C--CceEe-ecCHHHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCT---ASRFPEKIGGY-L--PGVHY-IRDVADADA 199 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~---~~~~p~~~g~~-~--~gv~~-~~~~~~~~~ 199 (489)
.+++.+++++.+++|..++.+. ..+.+.+|.++.||+||+|||+. |. .+..+|.. . .++++ +++..
T Consensus 74 ~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~-~~~i~g~~~~~~~~~~~~~~~~~---- 148 (335)
T 2zbw_A 74 QVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPR-RIGAPGEREFEGRGVYYAVKSKA---- 148 (335)
T ss_dssp HHGGGCCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEEC-CCCCTTTTTTBTTTEESSCSCGG----
T ss_pred HHHHcCCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCC-CCCCCChhhccCcEEEEecCchh----
Confidence 4456789999899999998764 35777788889999999999994 44 33344432 1 12322 22221
Q ss_pred HHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 200 ~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
...+++++|||+|.+|+|+|..|.+.|.+|+++++.+++++ .+...+.+.+.+++.||++++ ++.|+++..
T Consensus 149 ----~~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~---~~~~~~~l~~~l~~~gv~v~~-~~~v~~i~~- 219 (335)
T 2zbw_A 149 ----EFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQFRA---HEASVKELMKAHEEGRLEVLT-PYELRRVEG- 219 (335)
T ss_dssp ----GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCS---CHHHHHHHHHHHHTTSSEEET-TEEEEEEEE-
T ss_pred ----hcCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCc---cHHHHHHHHhccccCCeEEec-CCcceeEcc-
Confidence 12578999999999999999999999999999999988765 356778888899999999999 999999985
Q ss_pred CCCcEEEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 280 SDGRVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 280 ~~~~v~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
++++..|.+. +| +++++|.||+|+|++|+++++++++++.++|++.||+++||+.|+|||+|||+..+..
T Consensus 220 -~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---- 294 (335)
T 2zbw_A 220 -DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALEKNKIKVDTTMATSIPGVYACGDIVTYPGK---- 294 (335)
T ss_dssp -SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGGSCCCEETTEEECCTTCBCSSTTEEECSTTEECTTC----
T ss_pred -CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhhcceeccCCeeeeCCCCCCCCCCEEEeccccccCcc----
Confidence 3555567765 67 5799999999999999999999999988778899999999999999999999986532
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
...+..|..+|..+|.+|.+
T Consensus 295 ---~~~~~~A~~~g~~aa~~i~~ 314 (335)
T 2zbw_A 295 ---LPLIVLGFGEAAIAANHAAA 314 (335)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHH
T ss_pred ---hhhhhhhHHHHHHHHHHHHH
Confidence 23667788999999999875
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-37 Score=307.17 Aligned_cols=299 Identities=22% Similarity=0.335 Sum_probs=219.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
++++||+|||||+||+++|..|++.|+ +|+|||+++....... .+.+ .......++++............+
T Consensus 12 ~~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gg~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 82 (360)
T 3ab1_A 12 HDMRDLTIIGGGPTGIFAAFQCGMNNI---SCRIIESMPQLGGQLA-----ALYP-EKHIYDVAGFPEVPAIDLVESLWA 82 (360)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HTCT-TSEECCSTTCSSEEHHHHHHHHHH
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccc-----ccCC-CcccccCCCCCCCCHHHHHHHHHH
Confidence 346899999999999999999999876 7999999865421100 0000 000011111110000000111223
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCCC---CCCCCCCCC-C-CCC--ceEe-ecCHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT---ASRFPEKIG-G-YLP--GVHY-IRDVADA 197 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~~---~~~~p~~~g-~-~~~--gv~~-~~~~~~~ 197 (489)
.+++.+++++.+++|+.++.... .|.+.+|.++.||+||+|||+. |. .+.++| . ... ++++ +++..
T Consensus 83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~-~~~i~g~~~~~~~~~v~~~~~~~~-- 159 (360)
T 3ab1_A 83 QAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPR-KLPQLGNIDHLTGSSVYYAVKSVE-- 159 (360)
T ss_dssp HHHTTCCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBC-CCGGGCCCTTTBTTTEESSCSCGG--
T ss_pred HHHHhCCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCC-CCCCCCchhhCcCceEEEecCCHH--
Confidence 44567899999999999987643 7888888889999999999994 43 233444 2 222 2332 22221
Q ss_pred HHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 198 DALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 198 ~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
...+++++|||+|.+|+|+|..|.+.+.+|+++++.+.+++. +...+.+.+.+++.||++++ +++|+++.
T Consensus 160 ------~~~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~---~~~~~~l~~~~~~~gv~i~~-~~~v~~i~ 229 (360)
T 3ab1_A 160 ------DFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGH---GKTAHEVERARANGTIDVYL-ETEVASIE 229 (360)
T ss_dssp ------GGTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSC---SHHHHSSHHHHHHTSEEEES-SEEEEEEE
T ss_pred ------HcCCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCC---HHHHHHHHHHhhcCceEEEc-CcCHHHhc
Confidence 125789999999999999999999999999999999877652 35667788888899999999 99999998
Q ss_pred eCCCCcEEEEEeC--CC--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCC
Q 011267 278 AGSDGRVAAVKLE--DG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353 (489)
Q Consensus 278 ~~~~~~v~~v~~~--~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~ 353 (489)
.+ ++++..|.+. +| +++++|.||+|+|++|++++++.++++.++|++.||+++||++|+|||+|||+..+..
T Consensus 230 ~~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~--- 305 (360)
T 3ab1_A 230 ES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARWDLELYENALVVDSHMKTSVDGLYAAGDIAYYPGK--- 305 (360)
T ss_dssp EE-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEETTEEECCTTSBCSSTTEEECSTTEECTTC---
T ss_pred cC-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHhhccccccCeeeecCCCcCCCCCEEEecCccCCCCc---
Confidence 54 4555566664 77 5799999999999999999999999988778899999999999999999999986532
Q ss_pred cccccccHHHHHHHHHHHHHHHhc
Q 011267 354 RTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 354 ~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
...+..|..+|..+|.+|.+
T Consensus 306 ----~~~~~~A~~~g~~aa~~i~~ 325 (360)
T 3ab1_A 306 ----LKIIQTGLSEATMAVRHSLS 325 (360)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHH
T ss_pred ----cceeehhHHHHHHHHHHHHh
Confidence 23667788999999999875
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-37 Score=300.81 Aligned_cols=293 Identities=17% Similarity=0.235 Sum_probs=213.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++||+|||||+||++||..|++.|+ +|+|||+++....... ..++ ......+++++............++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~gG~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (332)
T 3lzw_A 6 KVYDITIIGGGPVGLFTAFYGGMRQA---SVKIIESLPQLGGQLS-----ALYP-EKYIYDVAGFPKIRAQELINNLKEQ 76 (332)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHH-----HHCT-TSEECCSTTCSSEEHHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCCceeh-----hcCC-CceEeccCCCCCCCHHHHHHHHHHH
Confidence 45799999999999999999999876 7999999876431100 0000 0001111211111000011122344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCC---CCCCCCCCCCCCC---CceEeecCHHHHHHH
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGC---TASRFPEKIGGYL---PGVHYIRDVADADAL 200 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~---~~~~~p~~~g~~~---~gv~~~~~~~~~~~~ 200 (489)
+++.+++++.+++|+.++...+ .+.+.+|+ +.||+||+|||+ .|. .+..+|... ..+++ .+.+..
T Consensus 77 ~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~-~~~d~vVlAtG~~~~~p~-~~~~~g~~~~~g~~~~~--~~~~~~-- 150 (332)
T 3lzw_A 77 MAKFDQTICLEQAVESVEKQADGVFKLVTNEET-HYSKTVIITAGNGAFKPR-KLELENAEQYEGKNLHY--FVDDLQ-- 150 (332)
T ss_dssp HTTSCCEEECSCCEEEEEECTTSCEEEEESSEE-EEEEEEEECCTTSCCEEC-CCCCTTGGGGBTTTEES--SCSCGG--
T ss_pred HHHhCCcEEccCEEEEEEECCCCcEEEEECCCE-EEeCEEEECCCCCcCCCC-CCCCCChhhccCceEEE--ecCCHH--
Confidence 5567999999999999998765 78888886 999999999999 665 344444322 23332 121111
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
...+++++|||+|.+|+|+|..|.+.+.+|+++++.+++.+. ++ ..+.+++.||++++ ++.++++..++
T Consensus 151 ---~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~--~~-----~~~~l~~~gv~~~~-~~~v~~i~~~~ 219 (332)
T 3lzw_A 151 ---KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAH--EH-----SVENLHASKVNVLT-PFVPAELIGED 219 (332)
T ss_dssp ---GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSC--HH-----HHHHHHHSSCEEET-TEEEEEEECSS
T ss_pred ---HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCcc--HH-----HHHHHhcCCeEEEe-CceeeEEecCC
Confidence 125789999999999999999999999999999999877542 22 23447889999999 99999998543
Q ss_pred CCcEEEEEeCC-----CcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcc
Q 011267 281 DGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 281 ~~~v~~v~~~~-----g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
+ +..|.+.+ ++++++|.||+|+|++|++++++.++++.++|+|.||+++||+.|+|||+|||+..+..
T Consensus 220 ~--~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~----- 292 (332)
T 3lzw_A 220 K--IEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIEKNSIVVKSTMETNIEGFFAAGDICTYEGK----- 292 (332)
T ss_dssp S--CCEEEEEETTSCCEEEEECSEEEECCCEECCCGGGGGSSCCEETTEEECCTTSBCSSTTEEECGGGEECTTC-----
T ss_pred c--eEEEEEEecCCCceEEEECCEEEEeeccCCCchHHhhcCccccCCeEEeCCCCceecCCEEEccceecCCCC-----
Confidence 2 34566655 45799999999999999999999999988878899999999999999999999975432
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011267 356 ARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
...+..|..+|+.+|.+|+.
T Consensus 293 --~~~~~~A~~~g~~aa~~i~~ 312 (332)
T 3lzw_A 293 --VNLIASGFGEAPTAVNNAKA 312 (332)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH
T ss_pred --cceEeeehhhHHHHHHHHHH
Confidence 33667788999999998875
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-36 Score=292.39 Aligned_cols=290 Identities=21% Similarity=0.252 Sum_probs=213.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+++||+|||||+||++||.+|++.|+ +|+|||++ .... .... .....++++.............++
T Consensus 14 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~--~gg~-~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 79 (323)
T 3f8d_A 14 EKFDVIIVGLGPAAYGAALYSARYML---KTLVIGET--PGGQ-LTEA--------GIVDDYLGLIEIQASDMIKVFNKH 79 (323)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESS--TTGG-GGGC--------CEECCSTTSTTEEHHHHHHHHHHH
T ss_pred CccCEEEECccHHHHHHHHHHHHCCC---cEEEEecc--CCCe-eccc--------ccccccCCCCCCCHHHHHHHHHHH
Confidence 45899999999999999999999986 69999997 1110 0000 000111111110000001122345
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHHHHhh
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL 204 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~~~~~ 204 (489)
+++.+++++. .+|..++.+. ..+.+.+|.++.||+||+|||+.|. .|..++... +++++. .......
T Consensus 80 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~-~~~i~g~~~~~~~~~~~~------~~~~~~~ 151 (323)
T 3f8d_A 80 IEKYEVPVLL-DIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRR-KLGVPGEQEFAGRGISYC------SVADAPL 151 (323)
T ss_dssp HHTTTCCEEE-SCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEEC-CCCCTTTTTTBTTTEESC------HHHHGGG
T ss_pred HHHcCCEEEE-EEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCc-cCCCCchhhhcCCceEEe------ccCCHhH
Confidence 5677999998 8999998764 4678888889999999999999976 455555433 444332 1112234
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++++|||+|.+|+|+|..|.+.+.+|+++++.+++++ ++. .+.+.+++.||++++ ++.++++..+ +++
T Consensus 152 ~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~-~~~v~~i~~~--~~~ 222 (323)
T 3f8d_A 152 FKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDTFKA---QPI---YVETVKKKPNVEFVL-NSVVKEIKGD--KVV 222 (323)
T ss_dssp GTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEEC-SEEEEEEEES--SSE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCc---CHH---HHHHHHhCCCcEEEe-CCEEEEEecc--Cce
Confidence 5689999999999999999999999999999999988765 332 333444456999999 9999999854 555
Q ss_pred EEEEeCC---Cc--EEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCccccc
Q 011267 285 AAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358 (489)
Q Consensus 285 ~~v~~~~---g~--~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~ 358 (489)
..|++.+ |+ ++++|.||+++|.+|++++++.++++.+ +|++.||++++|+.|+|||+|||+..+. ..
T Consensus 223 ~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~-------~~ 295 (323)
T 3f8d_A 223 KQVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWMRTSVPGVFAAGDCTSAWL-------GF 295 (323)
T ss_dssp EEEEEEETTTCCEEEEECSEEEECCCEECCHHHHHHTTCCBCTTSSBCCCTTCBCSSTTEEECSTTBSTTT-------TC
T ss_pred eEEEEEECCCCceEEEEcCEEEEEECCCCChhHHhhcCeeecCCCcEecCCCceecCCCEEEcceecCCCC-------cc
Confidence 5677765 76 7999999999999999999999999875 5789999999999999999999998641 02
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 011267 359 EHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 359 ~~~~~A~~~g~~~a~~l~~ 377 (489)
..+..|..+|+.+|.++..
T Consensus 296 ~~~~~A~~~g~~aa~~i~~ 314 (323)
T 3f8d_A 296 RQVITAVAQGAVAATSAYR 314 (323)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cceeehhhHHHHHHHHHHH
Confidence 3667788899998888753
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=299.87 Aligned_cols=298 Identities=18% Similarity=0.185 Sum_probs=221.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|||||||+||++||.+|++.+. +.+|+|||+++++.| .|.+.. ++.. ...... ..+..+.+
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~-~~~Vtlie~~~~~~~-~p~~~~-v~~g-~~~~~~------------~~~~~~~~ 65 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNETYYT-CYMSNE-VIGG-DRELAS------------LRVGYDGL 65 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSSEEC-STTHHH-HHHT-SSCGGG------------GEECSHHH
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCc-CCeEEEEeCCCCCCC-ccCHHH-HhcC-CCCHHH------------HhhCHHHH
Confidence 4689999999999999999999886 789999999886533 233322 2211 111111 12334567
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC----CCceEeecCHHHHHHHHHhhc-
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY----LPGVHYIRDVADADALISSLE- 205 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~----~~gv~~~~~~~~~~~~~~~~~- 205 (489)
.+.+++++.+ +|+.||++++++.+.+|.++.||+||+|||+.+. .+.++|.. ...++.+.+.+++..+++.+.
T Consensus 66 ~~~gv~~i~~-~v~~id~~~~~v~~~~g~~i~yd~LviAtG~~~~-~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (401)
T 3vrd_B 66 RAHGIQVVHD-SALGIDPDKKLVKTAGGAEFAYDRCVVAPGIDLL-YDKIEGYSEALAAKLPHAWKAGEQTALLRRQLES 143 (401)
T ss_dssp HHTTCEEECS-CEEEEETTTTEEEETTSCEEECSEEEECCCEEEC-GGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHH
T ss_pred HHCCCEEEEe-EEEEEEccCcEEEecccceeecceeeeccCCccc-cCCccCchhhcccCccceeccHHHHHHHHHHHHh
Confidence 7889999875 8999999999999999999999999999999876 34445532 123455666677766665543
Q ss_pred --CCCcEEEECCC----------HHHHHHHHHHHhCC--CcEEEEccCCcchh-hhhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 206 --KAKKVVVVGGG----------YIGMEVAAAAVGWK--LDTTIIFPENHLLQ-RLFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 206 --~~~~vvViG~G----------~~g~e~A~~l~~~g--~~V~lv~~~~~~l~-~~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
.+..+++.+++ -.+++++..+++.+ .+|++++..+.+.. ..+++.+.+.+.+.+++.||++++ +
T Consensus 144 ~~~~~~~v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~-~ 222 (401)
T 3vrd_B 144 MDDGGVVIIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHP-G 222 (401)
T ss_dssp SCTTCEEEEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEEC-T
T ss_pred cccCCcEEEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEe-C
Confidence 33444444322 14566777776665 57899998887632 246777888888888999999999 9
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCC-CC-CCCCCeEEeccccccC
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FR-TRMPGIFAIGDVAAFP 348 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~-t~~~~Iya~GD~a~~~ 348 (489)
++++.++.+.+.. .+.+++|+++++|.+++++|.+|+ .+++++++..++|+|.||++ +| |++|||||+|||+...
T Consensus 223 ~~v~~v~~~~~~~--~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~~gl~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~ 299 (401)
T 3vrd_B 223 PDAAVVKTDTEAM--TVETSFGETFKAAVINLIPPQRAG-KIAQSASLTNDSGWCPVDIRTFESSLQPGIHVIGDACNAA 299 (401)
T ss_dssp TTTCEEEEETTTT--EEEETTSCEEECSEEEECCCEEEC-HHHHHTTCCCTTSSBCBCTTTCBBSSSTTEEECGGGBCCT
T ss_pred ceEEEEEecccce--EEEcCCCcEEEeeEEEEecCcCCc-hhHhhccccccCCCEEECCCcceecCCCCEEEecccccCC
Confidence 9999887554443 578999999999999999999998 78999999777788999986 65 7999999999998642
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.. ..+...|..||+.+|+||++
T Consensus 300 ~~-------pk~a~~A~~qa~v~A~ni~~ 321 (401)
T 3vrd_B 300 PM-------PKSAYSANSQAKVAAAAVVA 321 (401)
T ss_dssp TS-------CBSHHHHHHHHHHHHHHHHH
T ss_pred CC-------CchHHHHHHHHHHHHHHHHH
Confidence 21 12556689999999999864
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=292.99 Aligned_cols=298 Identities=20% Similarity=0.227 Sum_probs=201.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCChh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPE 128 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (489)
+.+||+||||||||++||.+|++.|+ +|+|||++...... + .+.+.. .....++++++.. .+.+...+..+
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~~g~---~v~liE~~~~gg~~-~---~G~~~~-~~~i~~~~g~~~~i~~~~l~~~~~~ 74 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGRSSL---KPVMYEGFMAGGVA-A---GGQLTT-TTIIENFPGFPNGIDGNELMMNMRT 74 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSGGGCC-T---TCGGGG-SSEECCSTTCTTCEEHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCcc-c---CCCcCC-hHHhhhccCCcccCCHHHHHHHHHH
Confidence 46899999999999999999999987 69999987532110 0 011100 0111122222210 00111122234
Q ss_pred HHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 206 (489)
.+++.++++... .+....... +.+.+.++.++.||+||||||+.|+. |.+||.+.............+. ......
T Consensus 75 ~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~-~~ipG~~~~~~~~~~~~~~~~~-~~~~~~ 151 (314)
T 4a5l_A 75 QSEKYGTTIITE-TIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKR-MHVPGEDKYWQNGVSACAICDG-AVPIFR 151 (314)
T ss_dssp HHHHTTCEEECC-CEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECC-CCCTTHHHHBTTTEESCHHHHT-TSGGGT
T ss_pred HHhhcCcEEEEe-EEEEeecCCCceEEEECCCeEEEEeEEEEcccccccc-cCCCccccccccceeeehhhhh-hhhhcC
Confidence 556778888764 666665543 46778888999999999999999874 5555533222112222222222 122346
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA 286 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~ 286 (489)
+++++|||+|++|+|+|..|.++|.+|+++++.+.... .+. ...+.....+++.+. ...+.++...+ .....
T Consensus 152 ~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~---~~~---~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~~~~ 223 (314)
T 4a5l_A 152 NKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRA---SKT---MQERVLNHPKIEVIW-NSELVELEGDG-DLLNG 223 (314)
T ss_dssp TSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHH---HHHHHHTCTTEEEEC-SEEEEEEEESS-SSEEE
T ss_pred CCeEEEECCChHHHHHHHHHHHhCCeeeeecccccccc---cch---hhhhhhcccceeeEe-eeeeEEEEeee-eccce
Confidence 79999999999999999999999999999998876543 222 233456677888888 88888887543 33333
Q ss_pred EEe-----CCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccH
Q 011267 287 VKL-----EDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 361 (489)
Q Consensus 287 v~~-----~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~ 361 (489)
+.+ .+++++++|.|++++|++||++++... +..+++|++||+++|||+|+|||+|||+..+.. ..
T Consensus 224 ~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~-~~~~~~G~iv~~~~~Ts~pgIyA~GDv~~~~~~---------~~ 293 (314)
T 4a5l_A 224 AKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ-VKTADDGYILTEGPKTSVDGVFACGDVCDRVYR---------QA 293 (314)
T ss_dssp EEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS-SCBCTTSCBCCBTTBCSSTTEEECSTTTCSSCC---------CH
T ss_pred eEEeecccccceeeccccceEecccccChhHhccc-ceEcCCeeEeCCCCccCCCCEEEEEeccCCcch---------HH
Confidence 433 345689999999999999999998654 555556777999999999999999999986542 23
Q ss_pred HHHHHHHHHHHHHHh
Q 011267 362 DHARQSAQHCIKALL 376 (489)
Q Consensus 362 ~~A~~~g~~~a~~l~ 376 (489)
..|..+|+.||.++.
T Consensus 294 ~~A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 294 IVAAGSGCMAALSCE 308 (314)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 447778888887663
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=304.41 Aligned_cols=301 Identities=19% Similarity=0.198 Sum_probs=215.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
++|||||||+||++||.+|++.+. +.+|||||+++++.|. |.+.. +... .....++ .....++++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~-~~~VtlI~~~~~~~~~-p~l~~-v~~g-~~~~~~i-----------~~~~~~~~~ 67 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMP-DLKITLISDRPYFGFT-PAFPH-LAMG-WRKFEDI-----------SVPLAPLLP 67 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCT-TCEEEEECSSSEEECG-GGHHH-HHHT-CSCGGGS-----------EEESTTTGG
T ss_pred CcEEEECCCHHHHHHHHHHhccCc-CCeEEEEcCCCCCccC-ccHHH-HhcC-CCCHHHh-----------hhcHHHHHH
Confidence 589999999999999999999875 7899999999988774 55432 1111 1111111 122345667
Q ss_pred HCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh---cCCC
Q 011267 132 EKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL---EKAK 208 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~---~~~~ 208 (489)
+.+++++.+ +|+.||+++++|++++|++++||+||||||+++. ++ .+|.. ++.+.+++.+++.++++.+ ...+
T Consensus 68 ~~gv~~i~~-~v~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~-i~G~~-e~~~~~~~~~~a~~~~~~l~~~~~~~ 143 (430)
T 3hyw_A 68 KFNIEFINE-KAESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FG-AEGQE-ENSTSICTAEHALETQKKLQELYANP 143 (430)
T ss_dssp GGTEEEECS-CEEEEETTTTEEEETTCCEEECSEEEECCCCEEE-CC-SBTHH-HHSCCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HCCcEEEEe-EEEEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CC-ccCcc-cCcCCcccHHHHHHHHHHHHhhccCC
Confidence 889999975 8999999999999999999999999999999753 33 34432 3345677888887766554 2355
Q ss_pred cEEEECCCH------HHHHH----HHHHHhCC----CcEEEEccCCcchh--hhhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 209 KVVVVGGGY------IGMEV----AAAAVGWK----LDTTIIFPENHLLQ--RLFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 209 ~vvViG~G~------~g~e~----A~~l~~~g----~~V~lv~~~~~~l~--~~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
.++|+|++. .+.|+ +..+.+.+ .++++++..+.+.. ....+...+.+.+.++++||++++ ++.
T Consensus 144 ~~vv~gg~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~-~~~ 222 (430)
T 3hyw_A 144 GPVVIGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIA-NVA 222 (430)
T ss_dssp CCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEEC-SCE
T ss_pred ceEEEeCCCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEe-Cce
Confidence 566666542 23343 44455555 36888887765532 224567778899999999999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCe--ecC-CcEEeCCCCC-CCCCCeEEeccccc
Q 011267 273 IKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLN--SSV-GGIQVDGQFR-TRMPGIFAIGDVAA 346 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~--~~~-g~i~vd~~~~-t~~~~Iya~GD~a~ 346 (489)
|++++. +.+ .+...+| +++++|.+++++|.+|+ +++..++.. .+. +.+.||++|| |++|||||+|||+.
T Consensus 223 v~~v~~---~~~-~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~ 297 (430)
T 3hyw_A 223 VKAIEP---DKV-IYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTA 297 (430)
T ss_dssp EEEECS---SEE-EEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBC
T ss_pred EEEEeC---Cce-EEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEe
Confidence 999963 222 2333333 57999999999999998 677766543 343 4589999999 79999999999998
Q ss_pred cCCccCCcc--cccccHHHHHHHHHHHHHHHhc
Q 011267 347 FPLKMYDRT--ARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 347 ~~~~~~~~~--~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+....... ..+.+.+.|.+||+.+|+||++
T Consensus 298 ~p~~~~~~~~~~~pk~a~~A~~qg~~~A~Ni~~ 330 (430)
T 3hyw_A 298 IPPIEKTPIPTGVPKTGMMIEQMAMAVAHNIVN 330 (430)
T ss_dssp CCCSSCCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCcCcCccchHHHHHHHHHHHHHHHHHH
Confidence 765321110 1133566799999999999975
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=288.14 Aligned_cols=288 Identities=24% Similarity=0.286 Sum_probs=208.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+.+||+|||||+||++||..|++.|+ +|+|||+... . ....... ....++++.............++
T Consensus 15 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~-g-g~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 81 (319)
T 3cty_A 15 RDFDVVIVGAGAAGFSAAVYAARSGF---SVAILDKAVA-G-GLTAEAP--------LVENYLGFKSIVGSELAKLFADH 81 (319)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSST-T-GGGGGCS--------CBCCBTTBSSBCHHHHHHHHHHH
T ss_pred CCCcEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCC-C-ccccccc--------hhhhcCCCcccCHHHHHHHHHHH
Confidence 45899999999999999999999986 6999998532 1 1000000 00011111000000001122344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHHHHhh
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL 204 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~~~~~ 204 (489)
+++.+++++. .+|..++.+.+ .|.+ ++.++.||+||+|||+.|. .|..++... .++++..+ .....
T Consensus 82 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~-~~~~~~~~~li~AtG~~~~-~~~i~g~~~~~~~~~~~~~~------~~~~~ 152 (319)
T 3cty_A 82 AANYAKIREG-VEVRSIKKTQGGFDIET-NDDTYHAKYVIITTGTTHK-HLGVKGESEYFGKGTSYCST------CDGYL 152 (319)
T ss_dssp HHTTSEEEET-CCEEEEEEETTEEEEEE-SSSEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESCHH------HHGGG
T ss_pred HHHcCCEEEE-eeEEEEEEeCCEEEEEE-CCCEEEeCEEEECCCCCcc-cCCCCChHHhCCceEEEEEe------cchhh
Confidence 5667999988 68999987655 5655 5667999999999999876 344455321 34443321 12234
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++++|||+|.+|+|+|..|.+++.+|+++++.+.+.. ++. +.+.+++.||++++ +++++++..+ ++++
T Consensus 153 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~---~~~----l~~~l~~~gv~i~~-~~~v~~i~~~-~~~v 223 (319)
T 3cty_A 153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKYMC---ENA----YVQEIKKRNIPYIM-NAQVTEIVGD-GKKV 223 (319)
T ss_dssp GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSCCS---CHH----HHHHHHHTTCCEEC-SEEEEEEEES-SSSE
T ss_pred cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCccCC---CHH----HHHHHhcCCcEEEc-CCeEEEEecC-CceE
Confidence 5679999999999999999999999999999999887643 333 44556688999999 9999999854 3445
Q ss_pred EEEEeC---CCc--EEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCccccc
Q 011267 285 AAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358 (489)
Q Consensus 285 ~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~ 358 (489)
..+.+. +|+ ++++|.||+|+|++|++++++++|++.+ +|+|.||+++||+.|+|||+|||+..+.
T Consensus 224 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~--------- 294 (319)
T 3cty_A 224 TGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQRTSVPGVYAAGDVTSGNF--------- 294 (319)
T ss_dssp EEEEEEETTTCCEEEECCSEEEECCCEEECCGGGTTSCCCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC---------
T ss_pred EEEEEEEcCCCceEEEecCEEEEeeCCccChHHHhhccccccCCccEeCCCCCccCCCCEEEeecccCcch---------
Confidence 566664 665 6999999999999999999999998875 5789999999999999999999998532
Q ss_pred ccHHHHHHHHHHHHHHHhc
Q 011267 359 EHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 359 ~~~~~A~~~g~~~a~~l~~ 377 (489)
..+..|..+|+.+|.++..
T Consensus 295 ~~~~~A~~~g~~aa~~i~~ 313 (319)
T 3cty_A 295 AQIASAVGDGCKAALSLYS 313 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 2566789999999998864
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-35 Score=287.00 Aligned_cols=286 Identities=22% Similarity=0.300 Sum_probs=207.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
++||+|||||+||+++|..|++.|. +|+|||+.....+ ..+.+. .++...............++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~---~v~li~~~~gG~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 65 (310)
T 1fl2_A 1 AYDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGGQILDTVDIE------------NYISVPKTEGQKLAGALKVH 65 (310)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTGGGGGCCEEC------------CBTTBSSEEHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCceeccccccc------------cccCcCCCCHHHHHHHHHHH
Confidence 3699999999999999999999876 6999976421000 000000 00000000000001122345
Q ss_pred HHHCCcEEEeCCcEEEEeCC-----CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHH
Q 011267 130 YKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALI 201 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~-----~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~ 201 (489)
+++.+++++.+++|..++++ ...+.+.+|.++.||+||+|||+.|.. |..+|.. ...++++ ..+.
T Consensus 66 ~~~~~v~~~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~-~~~~g~~~~~~~~~~~~------~~~~ 138 (310)
T 1fl2_A 66 VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN-MNVPGEDQYRTKGVTYC------PHCD 138 (310)
T ss_dssp HHTSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTBTTTEESC------HHHH
T ss_pred HHHcCCeEEccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC-CCCCChhhcccceeEEe------ccCc
Confidence 56789999998899999875 357888888889999999999998763 4445532 1233332 2223
Q ss_pred HhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCC
Q 011267 202 SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 202 ~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~ 280 (489)
.....+++++|||+|.+|+|+|..|.+.+.+|+++++.+++. +++ .+.+.+++ .||++++ +++++++..+
T Consensus 139 ~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~----~~~~~l~~~~gv~v~~-~~~v~~i~~~- 209 (310)
T 1fl2_A 139 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK---ADQ----VLQDKLRSLKNVDIIL-NAQTTEVKGD- 209 (310)
T ss_dssp GGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCC---SCH----HHHHHHHTCTTEEEES-SEEEEEEEES-
T ss_pred HhhcCCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCcccC---ccH----HHHHHHhhCCCeEEec-CCceEEEEcC-
Confidence 344578999999999999999999999999999999998763 343 34455666 6999999 9999999853
Q ss_pred CCcEEEEEeCC---Cc--EEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 281 DGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 281 ~~~v~~v~~~~---g~--~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
++++..+++.+ |+ ++++|.||+|+|++|+++++++. ++.+ +|+|.||+++||+.|+|||+|||+..+..
T Consensus 210 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~~---- 284 (310)
T 1fl2_A 210 GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGA-VERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK---- 284 (310)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSSC----
T ss_pred CCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhcc-ccccCCCcEEcCCCCccCCCCEEEeecccCCcch----
Confidence 45665666653 53 68999999999999999888764 6654 57899999999999999999999986532
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|..+|+.+|.+|..
T Consensus 285 -----~~~~A~~~g~~aa~~i~~ 302 (310)
T 1fl2_A 285 -----QIIIATGEGAKASLSAFD 302 (310)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred -----hhhhhHhhHHHHHHHHHH
Confidence 455688888888888763
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=285.76 Aligned_cols=288 Identities=20% Similarity=0.268 Sum_probs=207.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCChh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPE 128 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 128 (489)
+++||+|||||+||+++|..|++.|+ +|+|||++. .... ..... .+ ..+++++. ...........+
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~-~gg~-~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~ 73 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGRAQL---STLILEKGM-PGGQ-IAWSE-EV-------ENFPGFPEPIAGMELAQRMHQ 73 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC-TTGG-GGGCS-CB-------CCSTTCSSCBCHHHHHHHHHH
T ss_pred ccCCEEEECCCHHHHHHHHHHHHcCC---cEEEEeCCC-CCcc-ccccc-cc-------ccCCCCCCCCCHHHHHHHHHH
Confidence 46899999999999999999999986 799999982 2111 00000 00 01111100 000000112234
Q ss_pred HHHHCCcEEEeCCcEEEEeCC--C---CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHH
Q 011267 129 WYKEKGIEMIYQDPVTSIDIE--K---QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL 200 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~--~---~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~ 200 (489)
.+++.+++++. .+|..++.+ . ..+.+.+|.++.||+||+|||+.|. .|..++... .+++++.. .
T Consensus 74 ~~~~~gv~~~~-~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~i~g~~~~~~~~~~~~~~------~ 145 (325)
T 2q7v_A 74 QAEKFGAKVEM-DEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPR-KLGIPGEDNFWGKGVSTCAT------C 145 (325)
T ss_dssp HHHHTTCEEEE-CCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEEC-CCCCTTTTTTBTTTEESCHH------H
T ss_pred HHHHcCCEEEe-eeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcC-CCCCCChhhccCceEEEecc------C
Confidence 56678999988 589999876 3 4677788889999999999999876 444555321 33443321 1
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
......+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++.+ ..+.+++.||++++ +++++++..
T Consensus 146 ~~~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~---~~~l~~~~gv~i~~-~~~v~~i~~-- 216 (325)
T 2q7v_A 146 DGFFYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTLRA---NKVA---QARAFANPKMKFIW-DTAVEEIQG-- 216 (325)
T ss_dssp HGGGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEEC-SEEEEEEEE--
T ss_pred CHHHcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCc---chHH---HHHHHhcCCceEec-CCceEEEcc--
Confidence 22345679999999999999999999999999999999887643 3332 22333456999999 999999985
Q ss_pred CCcEEEEEeC---CCc--EEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 281 DGRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 281 ~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
++++..|.+. +|+ ++++|.||+|+|++|++++++.+ ++.+ +|+|.||++++|+.|+|||+|||+..+.
T Consensus 217 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~----- 290 (325)
T 2q7v_A 217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKDT-VSLRDDGYVDVRDEIYTNIPMLFAAGDVSDYIY----- 290 (325)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTT-SCBCTTSCBCCBTTTBCSSTTEEECSTTTCSSC-----
T ss_pred CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhhh-cccCCCccEecCCCCccCCCCEEEeecccCccH-----
Confidence 3555567765 665 79999999999999999998887 6665 5789999999999999999999997532
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..+..|..+|+.+|.+|..
T Consensus 291 ----~~~~~A~~~g~~aa~~i~~ 309 (325)
T 2q7v_A 291 ----RQLATSVGAGTRAAMMTER 309 (325)
T ss_dssp ----CCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHH
Confidence 2566788999999998864
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-35 Score=288.94 Aligned_cols=285 Identities=14% Similarity=0.125 Sum_probs=195.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
.|+++||+||||||||++||.+|++.|+ +|+|||++.....- .....++.... .+. +.+......
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g~---~v~lie~~~~gg~~-~~~~~~~~~~~-----~~~------~~~~~~~~~ 67 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRARK---QIALFDNNTNRNRV-TQNSHGFITRD-----GIK------PEEFKEIGL 67 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCGGGG-SSCBCCSTTCT-----TBC------HHHHHHHHH
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCCee-eeecCCccCCC-----CCC------HHHHHHHHH
Confidence 5778999999999999999999999987 69999987431100 00000111000 000 000000011
Q ss_pred hHHHHC-CcEEEeCCcEEEEeCC---CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHH
Q 011267 128 EWYKEK-GIEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADAL 200 (489)
Q Consensus 128 ~~~~~~-~i~~~~~~~V~~id~~---~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~ 200 (489)
+...++ ++.+.. ..+..++.. .+++.+.+|+++.||+||||||++|+ .|.++|.+ ..++++ ....
T Consensus 68 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~-~p~i~G~~~~~~~~v~~------~~~~ 139 (304)
T 4fk1_A 68 NEVMKYPSVHYYE-KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEE-FPSIPNVREYYGKSLFS------CPYC 139 (304)
T ss_dssp HHHTTSTTEEEEE-CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEE-CCSCTTHHHHBTTTEES------CHHH
T ss_pred HHHHhcCCEEEEe-eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccc-cccccCccccccceeee------cccc
Confidence 122233 345554 466665432 35788999999999999999999987 45545421 122322 2222
Q ss_pred HHhhcCCCcEEEECCCH-HHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 201 ISSLEKAKKVVVVGGGY-IGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~-~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
......+++++|||||. .++|+|..+.+.+.+|+++.+.+.+.. .+.+.+++.|++++. + .++.+. .
T Consensus 140 ~~~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~---------~~~~~l~~~g~~~~~-~-~v~~~~-~ 207 (304)
T 4fk1_A 140 DGWELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQ---------TIMDELSNKNIPVIT-E-SIRTLQ-G 207 (304)
T ss_dssp HSGGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCCCCH---------HHHHHHHTTTCCEEC-S-CEEEEE-S
T ss_pred chhHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEeccccchh---------hhhhhhhccceeEee-e-eEEEee-c
Confidence 33334567888888875 568999999999999999988765433 345668889999987 5 577776 3
Q ss_pred CCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCccccc
Q 011267 280 SDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARV 358 (489)
Q Consensus 280 ~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~ 358 (489)
+++++..|++++|+++++|.+++++|.+|++.+++++|++.+ +|+|.||+++|||+|+|||+|||+..+..
T Consensus 208 ~~~~~~~v~~~~g~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~p~IyA~GDv~~~~~~-------- 279 (304)
T 4fk1_A 208 EGGYLKKVEFHSGLRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSEKNIYLAGETTTQGPS-------- 279 (304)
T ss_dssp GGGCCCEEEETTSCEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSSTTEEECSHHHHTSCC--------
T ss_pred CCCeeeeeeccccceeeecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCCCCEEEEeccCCCcch--------
Confidence 456677899999999999999999888888889999999986 46699999999999999999999974322
Q ss_pred ccHHHHHHHHHHHHHHHh
Q 011267 359 EHVDHARQSAQHCIKALL 376 (489)
Q Consensus 359 ~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|..+|+.||.++.
T Consensus 280 -~~~~A~~~G~~AA~~i~ 296 (304)
T 4fk1_A 280 -SLIIAASQGNKAAIAIN 296 (304)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 34557788888877664
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-35 Score=284.35 Aligned_cols=278 Identities=21% Similarity=0.176 Sum_probs=204.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
++||+|||||+||+++|.+|++.|+ +|+|||+++..... +.....+........ ........+.+
T Consensus 2 ~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~~~~~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 66 (297)
T 3fbs_A 2 KFDVIIIGGSYAGLSAALQLGRARK---NILLVDAGERRNRF-ASHSHGFLGQDGKAP-----------GEIIAEARRQI 66 (297)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECCCCGGGG-CSCCCSSTTCTTCCH-----------HHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCccccc-chhhcCCcCCCCCCH-----------HHHHHHHHHHH
Confidence 4799999999999999999999986 79999987532110 111111110000000 00001122334
Q ss_pred HHC-CcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHHHHhh
Q 011267 131 KEK-GIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADALISSL 204 (489)
Q Consensus 131 ~~~-~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~~~~~ 204 (489)
.+. +++++. .+|+.++++. ..+.+.+|.++.||+||+|||+.|. .|..+|... .++++.. ......
T Consensus 67 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~~ 138 (297)
T 3fbs_A 67 ERYPTIHWVE-GRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDE-LPEIAGLRERWGSAVFHCP------YCHGYE 138 (297)
T ss_dssp TTCTTEEEEE-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEE-CCCCBTTGGGBTTTEESCH------HHHTGG
T ss_pred HhcCCeEEEE-eEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCC-CCCCCCchhhcCCeeEEcc------cCcchh
Confidence 444 788876 4999998764 4788889989999999999999876 455555332 2333321 111223
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++++|||+|.+|+|+|..|.+.| +|+++.+.+.. +. +.+.+.+++.||+++. +.|+++..+ +
T Consensus 139 ~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~~----~~----~~~~~~l~~~gv~i~~--~~v~~i~~~--~-- 203 (297)
T 3fbs_A 139 LDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIVE----PD----ADQHALLAARGVRVET--TRIREIAGH--A-- 203 (297)
T ss_dssp GTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTCC----CC----HHHHHHHHHTTCEEEC--SCEEEEETT--E--
T ss_pred hcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCCC----CC----HHHHHHHHHCCcEEEc--ceeeeeecC--C--
Confidence 46899999999999999999999999 99999987652 22 3456778899999985 899999732 2
Q ss_pred EEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecC---C-cEEeCCCCCCCCCCeEEeccccccCCccCCccccccc
Q 011267 285 AAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV---G-GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEH 360 (489)
Q Consensus 285 ~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~---g-~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~ 360 (489)
.|.+.+|+++++|.||+++|.+|++++++.++++.+. | ++.||++++|+.|+|||+|||+..+. .
T Consensus 204 -~v~~~~g~~~~~D~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t~~~~vya~GD~~~~~~----------~ 272 (297)
T 3fbs_A 204 -DVVLADGRSIALAGLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVARPAG----------S 272 (297)
T ss_dssp -EEEETTSCEEEESEEEECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBCSSTTEEECSGGGCTTC----------C
T ss_pred -eEEeCCCCEEEEEEEEEccCcccCchhHHhcCCccccCCCCceEEeCCCCccCCCCEEEEeecCCchH----------H
Confidence 5888999999999999999999999999999988753 4 69999999999999999999998532 4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 011267 361 VDHARQSAQHCIKALLS 377 (489)
Q Consensus 361 ~~~A~~~g~~~a~~l~~ 377 (489)
+..|..+|+.+|.++..
T Consensus 273 ~~~A~~~g~~aa~~i~~ 289 (297)
T 3fbs_A 273 VALAVGDGAMAGAAAHR 289 (297)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHH
Confidence 56688889888888753
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-35 Score=284.26 Aligned_cols=289 Identities=18% Similarity=0.228 Sum_probs=208.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCChhH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPEW 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 129 (489)
++||+|||||+||++||..|++.|+ + +|+|||++..... ..... .+ ..+++++.. ..........++
T Consensus 1 ~~dvvIIG~G~aGl~aA~~l~~~g~-~-~v~lie~~~~gg~--~~~~~-~~-------~~~~~~~~~~~~~~~~~~l~~~ 68 (311)
T 2q0l_A 1 MIDCAIIGGGPAGLSAGLYATRGGV-K-NAVLFEKGMPGGQ--ITGSS-EI-------ENYPGVKEVVSGLDFMQPWQEQ 68 (311)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC-S-SEEEECSSSTTCG--GGGCS-CB-------CCSTTCCSCBCHHHHHHHHHHH
T ss_pred CceEEEECccHHHHHHHHHHHHCCC-C-cEEEEcCCCCCcc--ccccc-cc-------ccCCCCcccCCHHHHHHHHHHH
Confidence 3699999999999999999999876 2 6999998632110 00000 00 001111000 000001112344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHHhh
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISSL 204 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~~~ 204 (489)
+.+.+++++. .+|..++.+.+ .+.+.+|.++.||+||+|||+.|. .|..+|.. .++++++.+ .....
T Consensus 69 ~~~~~v~~~~-~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~-~~~~~g~~~~~~~~~~~~~~------~~~~~ 140 (311)
T 2q0l_A 69 CFRFGLKHEM-TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPK-RTGIKGESEYWGKGVSTCAT------CDGFF 140 (311)
T ss_dssp HHTTSCEEEC-SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTHHHHBTTTEESCHH------HHGGG
T ss_pred HHHcCCEEEE-EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCC-CCCCCChhhccCCcEEEeec------CChhh
Confidence 5667999988 68999987666 677788888999999999999876 45444421 133444321 12234
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHH-hcCcEEEEcCceEEEEEeCCCCc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ-QNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~-~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
..+++++|||+|.+|+|+|..|.+.|.+|+++++.+++. .++. +.+.+. +.||++++ ++.++++..+ +++
T Consensus 141 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~---~~~~----~~~~l~~~~gv~v~~-~~~v~~i~~~-~~~ 211 (311)
T 2q0l_A 141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGFR---CAPI----TLEHAKNNDKIEFLT-PYVVEEIKGD-ASG 211 (311)
T ss_dssp GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSCC---SCHH----HHHHHHTCTTEEEET-TEEEEEEEEE-TTE
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCccC---CCHH----HHHHHhhCCCeEEEe-CCEEEEEECC-CCc
Confidence 567999999999999999999999999999999988763 2443 333444 57999999 9999999854 345
Q ss_pred EEEEEeC---CCc--EEEcCEEEEccCCCCCCchhhhcC----Ceec-CCcEEeCCCCCCCCCCeEEeccccccCCccCC
Q 011267 284 VAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVG----LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYD 353 (489)
Q Consensus 284 v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~~~~~g----l~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~ 353 (489)
+..+++. +|+ ++++|.||+|+|++|++++++.++ ++.+ +|+|.||+++||+.|+|||+|||+..+.
T Consensus 212 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~~t~~~~vya~GD~~~~~~---- 287 (311)
T 2q0l_A 212 VSSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAP---- 287 (311)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECSTTBTTCC----
T ss_pred EeEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCccccCCCCeEEcccccCcch----
Confidence 5456665 675 799999999999999999998875 7765 5789999999999999999999998532
Q ss_pred cccccccHHHHHHHHHHHHHHHhc
Q 011267 354 RTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 354 ~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..+..|..+|+.+|.||..
T Consensus 288 -----~~~~~A~~~g~~aa~~i~~ 306 (311)
T 2q0l_A 288 -----KQVVCAASDGATAALSVIS 306 (311)
T ss_dssp -----CCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHhHHHHHHHHHH
Confidence 2567799999999998863
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=286.44 Aligned_cols=293 Identities=18% Similarity=0.250 Sum_probs=212.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (489)
++++||+|||||+||+++|.+|++.|+ +|+|+|+... ... +.... ....+++++.. ..........
T Consensus 3 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~-gg~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 69 (320)
T 1trb_A 3 TKHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEK-GGQ-------LTTTT--EVENWPGDPNDLTGPLLMERMH 69 (320)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSST-TGG-------GGGCS--BCCCSTTCCSSCBHHHHHHHHH
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEccCCC-Cce-------Eecch--hhhhCCCCCCCCCHHHHHHHHH
Confidence 346899999999999999999999876 6999996421 100 00000 00011111100 0000011223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEE-eCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHHh
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLI-TNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALISS 203 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~-~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~~ 203 (489)
.++.+.+++++.+ +|..++.+...+. +.++.++.||+||+|||+.|. .|..++.. ..++++.. .....
T Consensus 70 ~~~~~~~~~~~~~-~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~-~~~~~g~~~~~~~~~~~~~------~~~~~ 141 (320)
T 1trb_A 70 EHATKFETEIIFD-HINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR-YLGLPSEEAFKGRGVSACA------TSDGF 141 (320)
T ss_dssp HHHHHTTCEEECC-CEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC-CCCCHHHHHTBTTTEESCH------HHHGG
T ss_pred HHHHHCCCEEEEe-eeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcC-CCCCCChHHhCCceeEecc------cCCcc
Confidence 4556789999987 5999998765444 567788999999999999876 34444321 12333321 12223
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
+..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. ++.+.+.+.+.+++.||++++ +++|+++..+ +++
T Consensus 142 ~~~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~---~~~~~~~l~~~l~~~gv~i~~-~~~v~~i~~~-~~~ 216 (320)
T 1trb_A 142 FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRA---EKILIKRLMDKVENGNIILHT-NRTLEEVTGD-QMG 216 (320)
T ss_dssp GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCC---CHHHHHHHHHHHHTSSEEEEC-SCEEEEEEEC-SSS
T ss_pred ccCCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCcccc---CHHHHHHHHHhcccCCeEEEc-CceeEEEEcC-CCc
Confidence 45789999999999999999999999999999999887643 677888888889999999999 9999999854 346
Q ss_pred EEEEEeCC----C--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCC-----CCCCCCeEEeccccccCCccC
Q 011267 284 VAAVKLED----G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQF-----RTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 284 v~~v~~~~----g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~-----~t~~~~Iya~GD~a~~~~~~~ 352 (489)
+..|++.+ | ++++||.||+|+|++|++++++ .+++.++|++.||+++ +|+.|+|||+|||+..+..
T Consensus 217 v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~-~~l~~~~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~-- 293 (320)
T 1trb_A 217 VTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFE-GQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR-- 293 (320)
T ss_dssp EEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGT-TTSCEETTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSC--
T ss_pred eEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhc-ccccccCceEEECCCcccccccCCCCCEEEcccccCCcch--
Confidence 66677754 4 5799999999999999998887 4566666779999997 7999999999999986422
Q ss_pred CcccccccHHHHHHHHHHHHHHHhc
Q 011267 353 DRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|..+|+.+|.+|..
T Consensus 294 -------~~~~A~~~g~~aa~~i~~ 311 (320)
T 1trb_A 294 -------QAITSAGTGCMAALDAER 311 (320)
T ss_dssp -------CHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhhhccHHHHHHHHHH
Confidence 455688888888888753
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-35 Score=290.09 Aligned_cols=295 Identities=19% Similarity=0.252 Sum_probs=208.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQT 126 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 126 (489)
..+++||+|||||+||+++|..|++.|+ +|+|||+++.... ... +.+.. ......+++++.. .........
T Consensus 19 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~vie~~~~~~~---~~g-g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 90 (338)
T 3itj_A 19 SHVHNKVTIIGSGPAAHTAAIYLARAEI---KPILYEGMMANGI---AAG-GQLTT-TTEIENFPGFPDGLTGSELMDRM 90 (338)
T ss_dssp --CEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTB---CTT-CGGGG-SSEECCSTTCTTCEEHHHHHHHH
T ss_pred CCCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCCCC---CcC-ccccc-chhhcccCCCcccCCHHHHHHHH
Confidence 3457899999999999999999999987 6999999652111 110 11100 0000111111110 000111223
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEe-----CCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHH
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLIT-----NSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADAD 198 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~-----~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~ 198 (489)
.+++++.+++++.++ |..++.+...+.+ .++.++.||+||+|||+.+. .|..+|.. ..++++. .
T Consensus 91 ~~~~~~~gv~i~~~~-v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~ 162 (338)
T 3itj_A 91 REQSTKFGTEIITET-VSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK-RMHLPGEETYWQKGISAC------A 162 (338)
T ss_dssp HHHHHHTTCEEECSC-EEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEEC-CCCCTTHHHHBTTTEESC------H
T ss_pred HHHHHHcCCEEEEeE-EEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcC-CCCCCCchhccCccEEEc------h
Confidence 455667899999976 9999988765554 46778999999999999876 44444421 1223222 2
Q ss_pred HHHHh--hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhc-CcEEEEcCceEEE
Q 011267 199 ALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQN-GVKFVKVGASIKN 275 (489)
Q Consensus 199 ~~~~~--~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~ 275 (489)
..... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.++. ...+.+.+.+. ||++++ ++.|++
T Consensus 163 ~~~~~~~~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~-------~~~~~~~l~~~~gv~i~~-~~~v~~ 234 (338)
T 3itj_A 163 VCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRA-------STIMQKRAEKNEKIEILY-NTVALE 234 (338)
T ss_dssp HHHTTSGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCS-------CHHHHHHHHHCTTEEEEC-SEEEEE
T ss_pred hcccchhhcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccCC-------CHHHHHHHHhcCCeEEee-cceeEE
Confidence 22222 34689999999999999999999999999999999987765 23444555554 999999 999999
Q ss_pred EEeCCCCcEEEEEeCC-----CcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEE-eCCCCCCCCCCeEEeccccccC
Q 011267 276 LEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQ-VDGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~-----g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~-vd~~~~t~~~~Iya~GD~a~~~ 348 (489)
+..+ ++.+..|++.+ ++++++|.||+|+|++|+.++++. +++.+ +|.+. +|++++|+.|+|||+|||+..+
T Consensus 235 i~~~-~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~-~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~ 312 (338)
T 3itj_A 235 AKGD-GKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG-QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSK 312 (338)
T ss_dssp EEES-SSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT-TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSS
T ss_pred EEcc-cCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC-ceEecCCCcEEEcCcccccCCCCEEEeeccCCCC
Confidence 9854 45566677765 467999999999999999988877 88876 56677 4889999999999999999743
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
. ..+..|..+|+.||.+|..
T Consensus 313 ~---------~~~~~A~~~g~~aa~~i~~ 332 (338)
T 3itj_A 313 Y---------RQAITSAGSGCMAALDAEK 332 (338)
T ss_dssp C---------CCHHHHHHHHHHHHHHHHH
T ss_pred c---------cceeeehhhhHHHHHHHHH
Confidence 2 2556788899999988864
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=281.95 Aligned_cols=289 Identities=21% Similarity=0.221 Sum_probs=205.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCCCCCCCCCCCCccccCCCCCCCCCCCCCCc-cccCCCCCCCCh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEAYAPYERPALTKGYLFPLDKKPARLPGFH-TCVGSGGERQTP 127 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~l-i~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 127 (489)
.++||+|||||+||++||.+|++.|+ +|+| +|++. .... +... .....++++. ............
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~li~e~~~-~gG~-------~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 69 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATRGGL---KNVVMFEKGM-PGGQ-------ITSS--SEIENYPGVAQVMDGISFMAPWS 69 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHHTC---SCEEEECSSS-TTGG-------GGGC--SCBCCSTTCCSCBCHHHHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC---CeEEEEeCCC-CCce-------eeee--ceeccCCCCCCCCCHHHHHHHHH
Confidence 56899999999999999999999987 6888 99842 2110 0000 0000111111 000000011223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCC----CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC---CceEeecCHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL---PGVHYIRDVADADAL 200 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~----~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~---~gv~~~~~~~~~~~~ 200 (489)
+++++.+++++.+ +|..+ .+. ..+.+..+.++.||+||+|||+.|. .|..++... +++++. ...
T Consensus 70 ~~~~~~~v~~~~~-~v~~i-~~~~~~~~~v~~~~~~~~~~d~lvlAtG~~~~-~~~~~g~~~~~~~~~~~~------~~~ 140 (315)
T 3r9u_A 70 EQCMRFGLKHEMV-GVEQI-LKNSDGSFTIKLEGGKTELAKAVIVCTGSAPK-KAGFKGEDEFFGKGVSTC------ATC 140 (315)
T ss_dssp HHHTTTCCEEECC-CEEEE-EECTTSCEEEEETTSCEEEEEEEEECCCEEEC-CCCCBTTTTTBTTTEESC------HHH
T ss_pred HHHHHcCcEEEEE-EEEEE-ecCCCCcEEEEEecCCEEEeCEEEEeeCCCCC-CCCCCChhhcCCCeEEee------ecc
Confidence 4556679999987 88888 433 3421333328999999999999876 455555433 344332 222
Q ss_pred HHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 201 ISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 201 ~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
......+++++|||+|.+|+|+|..|.+.+.+|+++++.+++.. ++. .+.+.+++.||++++ ++.++++..+
T Consensus 141 ~~~~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~---~~~---~~~~~~~~~gv~~~~-~~~v~~i~~~- 212 (315)
T 3r9u_A 141 DGFFYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDEFRA---APS---TVEKVKKNEKIELIT-SASVDEVYGD- 212 (315)
T ss_dssp HGGGGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSCBS---CHH---HHHHHHHCTTEEEEC-SCEEEEEEEE-
T ss_pred cccccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCC---CHH---HHHHHHhcCCeEEEe-CcEEEEEEcC-
Confidence 33345689999999999999999999999999999999987632 333 344556789999999 9999999854
Q ss_pred CCcEEEEEeC--CCc--EEEcCEEEEccCCCCCCchhhh---cC-Ceec-CCcEEeCCCCCCCCCCeEEeccccccCCcc
Q 011267 281 DGRVAAVKLE--DGS--TIDADTIVIGIGAKPTVSPFER---VG-LNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKM 351 (489)
Q Consensus 281 ~~~v~~v~~~--~g~--~i~aD~vi~a~G~~p~~~~~~~---~g-l~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~ 351 (489)
++++..+++. +|+ ++++|.||+|+|.+|++++++. +| ++.+ +|++.||+++||+.|+|||+|||+..+.
T Consensus 213 ~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t~~~~v~a~GD~~~~~~-- 290 (315)
T 3r9u_A 213 KMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGLFAAGDLRKDAP-- 290 (315)
T ss_dssp TTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBCSSTTEEECGGGBTTCC--
T ss_pred CCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCcccCCCCEEEeecccCCch--
Confidence 4456566665 775 7999999999999999988776 55 7775 4789999999999999999999986422
Q ss_pred CCcccccccHHHHHHHHHHHHHHHhc
Q 011267 352 YDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 352 ~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..+..|..+|+.+|.+|..
T Consensus 291 -------~~~~~A~~~g~~aa~~i~~ 309 (315)
T 3r9u_A 291 -------KQVICAAGDGAVAALSAMA 309 (315)
T ss_dssp -------CCHHHHHHHHHHHHHHHHH
T ss_pred -------hhhhhHHhhHHHHHHHHHH
Confidence 2566788999999988863
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=292.70 Aligned_cols=288 Identities=20% Similarity=0.215 Sum_probs=220.7
Q ss_pred CcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
+||||||||+||+++|.+|++ .|. +|+|||+++.+.|. |.+.. .. ........+ .....+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~---~V~vie~~~~~~~~-~~~~~-~~-~~~~~~~~~-----------~~~~~~ 64 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKA---DVKVINKSRFSYFR-PALPH-VA-IGVRDVDEL-----------KVDLSE 64 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGS---EEEEEESSSEEEEC-CSSCC-CC-SSCCCCCCE-----------EEEHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEeCCCCceec-cchhh-cc-cCCcCHHHH-----------HHHHHH
Confidence 689999999999999999999 554 89999999876443 33322 11 111111111 123456
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeE----EeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKL----LKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL 204 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~----i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~ 204 (489)
++++.+++++.+ +|+.++.+.+.|.+.++.. +.||+||+|||+.|. .+.++|... ....+.+..++.++.+.+
T Consensus 65 ~~~~~gv~~~~~-~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~-~~~ipG~~~-~~~~~~~~~~~~~~~~~l 141 (409)
T 3h8l_A 65 ALPEKGIQFQEG-TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLA-TELVKGWDK-YGYSVCEPEFATKLREKL 141 (409)
T ss_dssp HTGGGTCEEEEC-EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEEC-GGGSBTHHH-HCEESSSTTHHHHHHHHH
T ss_pred HHhhCCeEEEEe-eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcC-ccCCCChhh-cCcCcCCHHHHHHHHHHH
Confidence 667789999986 9999999999999887764 899999999999876 344444321 344556667777776655
Q ss_pred cCC-CcEEEECCCH-------------------------HHHHHH----HHHHhCCC----cEEEEccCCcchhhhhCHH
Q 011267 205 EKA-KKVVVVGGGY-------------------------IGMEVA----AAAVGWKL----DTTIIFPENHLLQRLFTPS 250 (489)
Q Consensus 205 ~~~-~~vvViG~G~-------------------------~g~e~A----~~l~~~g~----~V~lv~~~~~~l~~~~~~~ 250 (489)
... ++++|||+|+ .++|+| ..+++.|. +|+++++.+ +++ .+++.
T Consensus 142 ~~~~~~~vViG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l~-~~~~~ 219 (409)
T 3h8l_A 142 ESFQGGNIAIGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YLS-DLSPN 219 (409)
T ss_dssp HHCCSEEEEEEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SST-TBCHH
T ss_pred HHhcCCeEEEEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-ccc-ccCHH
Confidence 432 6777999992 466766 45667774 899999988 665 47899
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhc--CCeecCCcEEeC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV--GLNSSVGGIQVD 328 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~--gl~~~~g~i~vd 328 (489)
+.+.+.+.+++.||++++ ++.|++++.+ .|++++|+++++|.||+++|.+|+ ++++.+ ++..++|++.||
T Consensus 220 ~~~~~~~~l~~~gV~~~~-~~~v~~i~~~------~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l~~~~G~i~vd 291 (409)
T 3h8l_A 220 SRKAVASIYNQLGIKLVH-NFKIKEIREH------EIVDEKGNTIPADITILLPPYTGN-PALKNSTPDLVDDGGFIPTD 291 (409)
T ss_dssp HHHHHHHHHHHHTCEEEC-SCCEEEECSS------EEEETTSCEEECSEEEEECCEECC-HHHHTSCGGGSCTTSCBCBB
T ss_pred HHHHHHHHHHHCCCEEEc-CCceEEECCC------eEEECCCCEEeeeEEEECCCCCcc-HHHHhccccCcCCCCCEEeC
Confidence 999999999999999999 9999999732 478899999999999999999998 678887 554446779999
Q ss_pred CCCCC-CCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 329 GQFRT-RMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 329 ~~~~t-~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+++|| +.|||||+|||+..+.+ ..+..|..||+.+|+||.+
T Consensus 292 ~~~~~~~~~~vfa~GD~~~~~~~--------~~~~~A~~q~~~aa~~i~~ 333 (409)
T 3h8l_A 292 LNMVSIKYDNVYAVGDANSMTVP--------KLGYLAVMTGRIAAQHLAN 333 (409)
T ss_dssp TTSBBSSCTTEEECGGGBTTCCS--------CCHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCCCEEEeehhccCCCC--------cHHHHHHHHHHHHHHHHHH
Confidence 99999 99999999999986432 2456688999999999875
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-35 Score=298.56 Aligned_cols=304 Identities=18% Similarity=0.187 Sum_probs=221.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 51 NREFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
++||||||||+||++||..|++ .+. +|+|||++++++|. |.+.. +... ......+ .....
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~---~Vtlie~~~~~~~~-~~~~~-~~~g-~~~~~~~-----------~~~l~ 66 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGH---EVTLISANDYFQFV-PSNPW-VGVG-WKERDDI-----------AFPIR 66 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGS---EEEEECSSSEEECG-GGHHH-HHHT-SSCHHHH-----------EEECH
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcC---EEEEEeCCCCCccc-CCccc-cccC-ccCHHHH-----------HHHHH
Confidence 5799999999999999999999 544 89999999876664 32211 1110 0000011 13456
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC--CceEeecCHHHHHHHHHhhc
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL--PGVHYIRDVADADALISSLE 205 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~--~gv~~~~~~~~~~~~~~~~~ 205 (489)
+++++.+++++. .+|+.++++.++|.+++|+++.||+||+|||+.+. .+.++|... ...+.+.+..++..+.+.+.
T Consensus 67 ~~~~~~gv~~~~-~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~-~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~ 144 (437)
T 3sx6_A 67 HYVERKGIHFIA-QSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLA-FENVPGSDPHEGPVQSICTVDHAERAFAEYQ 144 (437)
T ss_dssp HHHHTTTCEEEC-SCEEEEETTTTEEEETTSCEEECSEEEECCCCEEC-GGGSTTCSTTTSSEECCSSHHHHHHHHHHHH
T ss_pred HHHHHCCCEEEE-eEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcC-cccCCCCCcccCcceecccccHHHHHHHHHH
Confidence 778889999986 69999999999999999999999999999999886 455566543 24455667777766655332
Q ss_pred ---CCCcEEEECCCHH----H--HHHH----HHHHhCCCc-----EEEEccCCcchhhhh--CHHHHHHHHHHHHhcCcE
Q 011267 206 ---KAKKVVVVGGGYI----G--MEVA----AAAVGWKLD-----TTIIFPENHLLQRLF--TPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 206 ---~~~~vvViG~G~~----g--~e~A----~~l~~~g~~-----V~lv~~~~~~l~~~~--~~~~~~~l~~~l~~~Gv~ 265 (489)
..++++|||+|.. | +|+| ..+++.|.+ |+++++.+.+....+ .+...+.+.+.+++.||+
T Consensus 145 ~~~~~~~~vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~ 224 (437)
T 3sx6_A 145 ALLREPGPIVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIE 224 (437)
T ss_dssp HHHHSCCCEEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCE
T ss_pred HHHhCCCEEEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCE
Confidence 2556788888543 4 7777 666777875 999999987733211 135778889999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCC-----CcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCC-CCCCeE
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLED-----GSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRT-RMPGIF 339 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~~-----g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t-~~~~Iy 339 (489)
+++ ++.|++++. ++........+ ++++++|.+++++|.+|+..+.+..++..++|+|.||+++|| ++||||
T Consensus 225 ~~~-~~~v~~v~~--~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl~~~~G~i~Vd~~l~t~~~~~If 301 (437)
T 3sx6_A 225 AYT-NCKVTKVED--NKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGLCNPGGFVLVDEHQRSKKYANIF 301 (437)
T ss_dssp EEC-SEEEEEEET--TEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTTBCTTSCBCBCTTSBBSSCTTEE
T ss_pred EEc-CCEEEEEEC--CeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccccCCCCcEEeChhccCCCCCCEE
Confidence 999 999999973 22111111223 567999999999999988555555677555678999999999 999999
Q ss_pred EeccccccCCccCCcc---cccccHHHHHHHHHHHHHHHhc
Q 011267 340 AIGDVAAFPLKMYDRT---ARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 340 a~GD~a~~~~~~~~~~---~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
|+|||+..+... +.. ....+...|..||+.+|.||..
T Consensus 302 a~GD~~~~~~~~-~~~~~~~~pk~~~~A~~qg~~aA~ni~~ 341 (437)
T 3sx6_A 302 AAGIAIAIPPVE-TTPVPTGAPKTGYMIESMVSAAVHNIKA 341 (437)
T ss_dssp ECGGGBCCCCSC-CCSSCCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeccCCcC-CCcCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999876421 111 1134677799999999999975
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-34 Score=281.63 Aligned_cols=301 Identities=19% Similarity=0.242 Sum_probs=204.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (489)
++++||+|||||++|+++|..|++.|+ +|+|||+... .. ......+.... ....+++++.. ..........
T Consensus 6 ~~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~lie~~~~--~~-~~~gg~~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 77 (333)
T 1vdc_A 6 THNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMA--ND-IAPGGQLTTTT--DVENFPGFPEGILGVELTDKFR 77 (333)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSB--TT-BCTTCGGGGCS--EECCSTTCTTCEEHHHHHHHHH
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCc--cc-cCCCceeeecc--ccccCCCCccCCCHHHHHHHHH
Confidence 345799999999999999999999886 6999998210 00 00000011000 00011111100 0000011223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCC-CceEeecCHHHHHHHHHhh
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASRFPEKIGGYL-PGVHYIRDVADADALISSL 204 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~-~gv~~~~~~~~~~~~~~~~ 204 (489)
+++++.+++++.+. |..++.+.+ +|.+ ++.++.||+||+|||+.|.. |..++... .+.+..+.+.........+
T Consensus 78 ~~~~~~gv~~~~~~-v~~i~~~~~~~~v~~-~~~~~~~~~vv~A~G~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 154 (333)
T 1vdc_A 78 KQSERFGTTIFTET-VTKVDFSSKPFKLFT-DSKAILADAVILAIGAVAKR-LSFVGSGEVLGGFWNRGISACAVCDGAA 154 (333)
T ss_dssp HHHHHTTCEEECCC-CCEEECSSSSEEEEC-SSEEEEEEEEEECCCEEECC-CCCBTCSSSSSCCBTTTEESCHHHHTTS
T ss_pred HHHHHCCCEEEEeE-EEEEEEcCCEEEEEE-CCcEEEcCEEEECCCCCcCC-CCCCCccccccccccCcEEEeccCccch
Confidence 45567899999874 889987655 6666 78889999999999998763 44555432 1111111111111222222
Q ss_pred --cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 205 --EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 205 --~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
..+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .+.+ ..+.+++.||++++ +++++++..++++
T Consensus 155 ~~~~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~---~~~~---~~~~~~~~gv~i~~-~~~v~~i~~~~~~ 227 (333)
T 1vdc_A 155 PIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIM---QQRALSNPKIDVIW-NSSVVEAYGDGER 227 (333)
T ss_dssp GGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHH---HHHHHTCTTEEEEC-SEEEEEEEESSSS
T ss_pred hhcCCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcCCc---cHHH---HHHHHhCCCeeEec-CCceEEEeCCCCc
Confidence 5689999999999999999999999999999999987643 2222 22456788999999 9999999854321
Q ss_pred -cEEEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCccCCc
Q 011267 283 -RVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 283 -~v~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
++..+.+. +| +++++|.||+|+|++|++++++ .+++.+ +|++.||++ ++|+.|+|||+|||+..+..
T Consensus 228 ~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~---- 302 (333)
T 1vdc_A 228 DVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD-GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR---- 302 (333)
T ss_dssp SSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT-TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCC----
T ss_pred cceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh-ccccccCCCCEEechhhcccCCCCEEEeeeccCCCch----
Confidence 55556664 45 5799999999999999998876 467665 577999997 68999999999999986421
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|..+|+.+|.+|..
T Consensus 303 -----~~~~A~~~g~~aa~~i~~ 320 (333)
T 1vdc_A 303 -----QAITAAGTGCMAALDAEH 320 (333)
T ss_dssp -----CHHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHhHHHHHHHHHH
Confidence 456688888888888753
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=289.92 Aligned_cols=287 Identities=22% Similarity=0.306 Sum_probs=209.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-CCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-RPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
+..+||+|||||+||++||.+|++.|. +|+|||+.....+. ..... .+..++...+........
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~~G~---~v~lie~~~GG~~~~~~~~~------------~~~~~~~~~~~~l~~~l~ 274 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSARKGI---RTGLMGERFGGQVLDTVDIE------------NYISVPKTEGQKLAGALK 274 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSTTGGGTTCSCBC------------CBTTBSSBCHHHHHHHHH
T ss_pred cCcccEEEECCcHHHHHHHHHHHhCCC---eEEEEECCCCCccccccccc------------ccCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999986 69999864211000 00000 011000000000011223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC-----CCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIE-----KQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADA 199 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~-----~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~ 199 (489)
+.+++++++++.+++|..++++ ...|.+.+|.++.||+||+|||+.+.. +..+|.. ..+++++....
T Consensus 275 ~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~-~~ipG~~~~~~~~v~~~~~~~---- 349 (521)
T 1hyu_A 275 AHVSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN-MNVPGEDQYRTKGVTYCPHCD---- 349 (521)
T ss_dssp HHHHTSCEEEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC-CCCTTTTTTTTTTEECCTTCC----
T ss_pred HHHHHcCCEEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC-CCCCChhhhcCceEEEeecCc----
Confidence 4556789999999899999864 457888899899999999999998763 4445532 13454443211
Q ss_pred HHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cCcEEEEcCceEEEEEe
Q 011267 200 LISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEA 278 (489)
Q Consensus 200 ~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~ 278 (489)
.....+++++|||+|.+|+|+|..|++.+.+|+++++.+++.. + ..+.+.+++ .||++++ ++.++++..
T Consensus 350 --~~~~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~---~----~~l~~~l~~~~gV~v~~-~~~v~~i~~ 419 (521)
T 1hyu_A 350 --GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---D----QVLQDKVRSLKNVDIIL-NAQTTEVKG 419 (521)
T ss_dssp --GGGGBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCCS---C----HHHHHHHTTCTTEEEEC-SEEEEEEEE
T ss_pred --hhhcCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccCc---C----HHHHHHHhcCCCcEEEe-CCEEEEEEc
Confidence 1234689999999999999999999999999999999987754 2 245566777 6999999 999999985
Q ss_pred CCCCcEEEEEeCC---Cc--EEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccC
Q 011267 279 GSDGRVAAVKLED---GS--TIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 279 ~~~~~v~~v~~~~---g~--~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~ 352 (489)
+ ++++..+.+.+ |+ ++++|.|++++|.+|++++++. .++.+ +|+|.||+++||++|+|||+|||+..+..
T Consensus 420 ~-~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~-~l~~~~~G~I~Vd~~~~ts~p~VfA~GD~~~~~~~-- 495 (521)
T 1hyu_A 420 D-GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEG-ALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYK-- 495 (521)
T ss_dssp C-SSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECSTTBCCSSC--
T ss_pred C-CCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhh-hhccCCCCcEEeCCCCCCCCCCEEEeecccCCCcc--
Confidence 3 45666677653 53 6899999999999999998876 36655 57899999999999999999999986532
Q ss_pred CcccccccHHHHHHHHHHHHHHHh
Q 011267 353 DRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|+.+|..+|.++.
T Consensus 496 -------~~~~A~~~g~~aa~~i~ 512 (521)
T 1hyu_A 496 -------QIIIATGEGAKASLSAF 512 (521)
T ss_dssp -------CHHHHHHHHHHHHHHHH
T ss_pred -------eeeehHHhHHHHHHHHH
Confidence 44568888888888775
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-33 Score=277.02 Aligned_cols=288 Identities=18% Similarity=0.299 Sum_probs=201.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 127 (489)
++++||+|||||+||+++|..|++.|+ +|+|||+..... . +.... ....++++... ..........
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~---~v~lie~~~~gg-~-------~~~~~--~~~~~~~~~~~~~~~~~~~~l~ 78 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAARAQL---APLVFEGTSFGG-A-------LMTTT--DVENYPGFRNGITGPELMDEMR 78 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHHTTC---CCEEECCSSCSC-G-------GGSCS--CBCCSTTCTTCBCHHHHHHHHH
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCC---eEEEEecCCCCC-c-------eeccc--hhhhcCCCCCCCCHHHHHHHHH
Confidence 456899999999999999999999876 699999652110 0 11000 00011111100 0000011223
Q ss_pred hHHHHCCcEEEeCCcEEEEeCC-CCEE-EeCCCeEEeeCcEEecCCCCCCCCCCCCCCC---CCceEeecCHHHHHHHHH
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIE-KQTL-ITNSGKLLKYGSLIVATGCTASRFPEKIGGY---LPGVHYIRDVADADALIS 202 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~-~~~v-~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~---~~gv~~~~~~~~~~~~~~ 202 (489)
+++++.+++++.+. |..++.. ..++ .+.+|.++.||+||+|||+.|. .|..+|.. ..+++.+. ....
T Consensus 79 ~~~~~~~v~~~~~~-v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~-~~~i~g~~~~~~~~~~~~~------~~~~ 150 (335)
T 2a87_A 79 EQALRFGADLRMED-VESVSLHGPLKSVVTADGQTHRARAVILAMGAAAR-YLQVPGEQELLGRGVSSCA------TCDG 150 (335)
T ss_dssp HHHHHTTCEEECCC-EEEEECSSSSEEEEETTSCEEEEEEEEECCCEEEC-CCCCTHHHHTBTTTEESCH------HHHG
T ss_pred HHHHHcCCEEEEee-EEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCcc-CCCCCchHhccCCceEEee------ccch
Confidence 45567899999874 9999873 2467 7788888999999999999876 34444321 12333221 2223
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
.+..+++++|||+|.+|+|+|..|.+.+.+|+++++.+++.. .+.+ ..+.+++.||++++ +++++++..+ +
T Consensus 151 ~~~~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~---~~~~---~~~~~~~~gV~v~~-~~~v~~i~~~--~ 221 (335)
T 2a87_A 151 FFFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEFRA---SKIM---LDRARNNDKIRFLT-NHTVVAVDGD--T 221 (335)
T ss_dssp GGGTTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSCSS---CTTH---HHHHHHCTTEEEEC-SEEEEEEECS--S
T ss_pred hhcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCc---cHHH---HHHHhccCCcEEEe-CceeEEEecC--C
Confidence 345689999999999999999999999999999999887643 1111 12445778999999 9999999843 3
Q ss_pred cEEEEEeC---CC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCC-CCCCCCCeEEeccccccCCccCCcc
Q 011267 283 RVAAVKLE---DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQ-FRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 283 ~v~~v~~~---~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~-~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
.+..+.+. +| +++++|.||+|+|++|++++++ .+++.+ +|+|.||++ ++|+.|+|||+|||+..+..
T Consensus 222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~-~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~----- 295 (335)
T 2a87_A 222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVR-EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYR----- 295 (335)
T ss_dssp SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTB-TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCC-----
T ss_pred cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhh-cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHH-----
Confidence 33345554 44 5799999999999999998886 567665 577999996 68999999999999985321
Q ss_pred cccccHHHHHHHHHHHHHHHh
Q 011267 356 ARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+..|..+|+.+|.++.
T Consensus 296 ----~~~~A~~~g~~aA~~i~ 312 (335)
T 2a87_A 296 ----QAVTAAGSGCAAAIDAE 312 (335)
T ss_dssp ----CHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhHHHHHHHHH
Confidence 44557788888888775
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=279.04 Aligned_cols=308 Identities=17% Similarity=0.201 Sum_probs=206.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC------CCCCCCCCCccccC---CCCCCCC-CCCCCCcccc-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA------YAPYERPALTKGYL---FPLDKKP-ARLPGFHTCV- 118 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~------~~~y~~~~l~~~~~---~~~~~~~-~~~~~~~~~~- 118 (489)
+++||+|||||+||+++|.+|++.|. . +|+|||+++ ..+.....+...+. +...... ......+...
T Consensus 3 ~~~~vvIIGaG~aGl~aA~~l~~~g~-~-~v~lie~~~~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (369)
T 3d1c_A 3 QHHKVAIIGAGAAGIGMAITLKDFGI-T-DVIILEKGTVGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF 80 (369)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC-C-CEEEECSSSTTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred ccCcEEEECcCHHHHHHHHHHHHcCC-C-cEEEEecCCCCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence 45799999999999999999999876 2 799999986 11111000000000 0000000 0000000000
Q ss_pred CCC------CCCCChhHHHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEe
Q 011267 119 GSG------GERQTPEWYKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHY 190 (489)
Q Consensus 119 ~~~------~~~~~~~~~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~ 190 (489)
... .......++++.+++++.+++|+.++++. ..|.+.++ ++.||+||+|||+.+. |..++ ..+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g-~~~~d~vVlAtG~~~~--p~ip~---~~~~~ 154 (369)
T 3d1c_A 81 NEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTE-TYHADYIFVATGDYNF--PKKPF---KYGIH 154 (369)
T ss_dssp CCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSC-CEEEEEEEECCCSTTS--BCCCS---SSCEE
T ss_pred cccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCC-EEEeCEEEECCCCCCc--cCCCC---Cceec
Confidence 000 00011234466899999999999998763 46777666 5899999999999764 33333 11222
Q ss_pred ecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------hhCHHHHHHHHHHHHhcC-
Q 011267 191 IRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLAQRYEQLYQQNG- 263 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------~~~~~~~~~l~~~l~~~G- 263 (489)
..++.+.. ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+++. .+++...+.+.+.+++.|
T Consensus 155 ~~~~~~~~-----~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~ 229 (369)
T 3d1c_A 155 YSEIEDFD-----NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGAR 229 (369)
T ss_dssp GGGCSCGG-----GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCC
T ss_pred hhhcCChh-----hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCc
Confidence 22111111 124679999999999999999999999999999999887742 245777889999999997
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEccCCCCCCchhhhcCCeecCCcEEeCCC-CCCCCCCeEEe
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQ-FRTRMPGIFAI 341 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~-aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~-~~t~~~~Iya~ 341 (489)
|++++ ++.|++++..+ +. ..+.+.+|+++. +|.||+|+|++|+++++.+.+++.++|.+.||++ ++|++|+|||+
T Consensus 230 v~~~~-~~~v~~i~~~~-~~-~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~~~~~~~g~i~v~~~~~~t~~~~v~a~ 306 (369)
T 3d1c_A 230 IEMNV-HYTVKDIDFNN-GQ-YHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVTTNQDIKLTTHDESTRYPNIFMI 306 (369)
T ss_dssp EEEEC-SCCEEEEEEET-TE-EEEEESSSCCEEESSCCEECCCBCGGGSHHHHHHSCCTTSCCCBCTTSBBSSSTTEEEC
T ss_pred EEEec-CcEEEEEEecC-Cc-eEEEecCCeEeccCCceEEeeccCCccchhhhhhccCCCCCEEechhhcccCCCCeEEe
Confidence 99999 99999996432 22 357788887765 6999999999999877776666644566999985 67899999999
Q ss_pred ccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 342 GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 342 GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
|||+..+.... ..+..+.++|+.+|++|.+..
T Consensus 307 GD~~~~~~~~~------~~~~~~~~~a~~~a~~l~~~~ 338 (369)
T 3d1c_A 307 GATVENDNAKL------CYIYKFRARFAVLAHLLTQRE 338 (369)
T ss_dssp STTCCCSSCCC------CSHHHHGGGHHHHHHHHHHHT
T ss_pred ccccccCCeeE------EEEehhhHHHHHHHHHHhccc
Confidence 99998765432 134457788999999998643
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=281.48 Aligned_cols=300 Identities=17% Similarity=0.233 Sum_probs=195.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCC-------CC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS-------GG 122 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 122 (489)
+++||+|||||++|+++|..|++.|+ +|+|||+++...-...................++++...... ..
T Consensus 2 ~~~~vvIIG~G~aGl~~A~~l~~~g~---~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 4a9w_A 2 DSVDVVVIGGGQSGLSAGYFLRRSGL---SYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEV 78 (357)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHSSC---CEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHH
Confidence 45799999999999999999999987 699999987542110000000000000000011111000000 00
Q ss_pred CCCChhHHHHCCcEEEeCCcEEEEeCCCCE---EEeCCCeEEeeCcEEecCCC--CCCCCCCCCCCC-CCce-EeecCHH
Q 011267 123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LPGV-HYIRDVA 195 (489)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~V~~id~~~~~---v~~~~g~~i~yd~lvlATG~--~~~~~p~~~g~~-~~gv-~~~~~~~ 195 (489)
.....+++++.+++++.+++|+.++.+... |.+.+| ++.||+||+|||. .|. .|..+|.. ..+. .....+.
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~~~~~~-~~~~~g~~~~~~~~~~~~~~~ 156 (357)
T 4a9w_A 79 LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGTWGEAY-TPEYQGLESFAGIQLHSAHYS 156 (357)
T ss_dssp HHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCSGGGBC-CCCCTTGGGCCSEEEEGGGCC
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCCCCCCC-CCCCCCccccCCcEEEeccCC
Confidence 011233456679999999999999987765 677777 7999999999996 333 34444422 1111 1111111
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccchhhhh-CHHHHHHHHHHHH-------------
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHLLQRLF-TPSLAQRYEQLYQ------------- 260 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~l~~~~-~~~~~~~l~~~l~------------- 260 (489)
+ .....+++++|||+|.+|+|+|..|.+.+ +|+++.+. +.+++..+ +..+.+.+.+.+.
T Consensus 157 ~-----~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (357)
T 4a9w_A 157 T-----PAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPG 230 (357)
T ss_dssp C-----SGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-------------------
T ss_pred C-----hhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccc
Confidence 1 11235789999999999999999999998 69999987 56655432 2333333333322
Q ss_pred ---------------hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcE
Q 011267 261 ---------------QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGI 325 (489)
Q Consensus 261 ---------------~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i 325 (489)
+.|+ +.. +..++++... .+.+.+|+++++|.||+|+|++|++++++.+++..++|+|
T Consensus 231 ~~~~~~~~~~~~~~~~~g~-i~~-~~~v~~~~~~------~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~~gl~~~~G~i 302 (357)
T 4a9w_A 231 GFGDIVMVPPVLDARARGV-LAA-VPPPARFSPT------GMQWADGTERAFDAVIWCTGFRPALSHLKGLDLVTPQGQV 302 (357)
T ss_dssp ---CBCCCHHHHHHHHTTC-CCE-ECCCSEEETT------EEECTTSCEEECSEEEECCCBCCCCGGGTTTTCBCTTSCB
T ss_pred cccCcccChhHHHHHhcCc-eEE-ecCcceEeCC------eeEECCCCEecCCEEEECCCcCCCCcccCcccccCCCCCc
Confidence 3454 455 5677777632 5788999999999999999999999999999999667789
Q ss_pred EeCCC--CCCCCCCeEEec--cccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 326 QVDGQ--FRTRMPGIFAIG--DVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 326 ~vd~~--~~t~~~~Iya~G--D~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.||++ ++|+.|+|||+| ||+..... ....|..+|+.+|.+|..
T Consensus 303 ~vd~~~l~~t~~~~vya~Gd~d~~~~~~~---------~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 303 EVDGSGLRALAVPSVWLLGYGDWNGMASA---------TLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp CBCTTSCBBSSCTTEEECSSCGGGSTTCS---------STTTHHHHHHHHHHHHHH
T ss_pred cccCCcccCCCCCCeEEeccccccccchh---------hhhhhHHHHHHHHHHHHH
Confidence 99999 899999999999 56652211 222377788888888764
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.9e-33 Score=282.33 Aligned_cols=291 Identities=16% Similarity=0.173 Sum_probs=199.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..+||+|||||+||++||..|++.|. +.+|+|||+++.. |.. +..+ ..+.......+ .....++
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~-~~~V~vie~~~~~-gg~--~~~g-~~p~~~~~~~~-----------~~~~~~~ 68 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVP-FGL--VRFG-VAPDHPEVKNV-----------INTFTQT 68 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSS-CTH--HHHT-SCTTCGGGGGH-----------HHHHHHH
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCC-CCCEEEEeCCCcC-Cce--eecc-cCCCCccHHHH-----------HHHHHHH
Confidence 46799999999999999999999883 5689999998764 321 1110 00100000000 1123455
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHH----HHHh--
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADA----LISS-- 203 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~----~~~~-- 203 (489)
+++.+++++.+..+ .+.|.+.+. ++.||+||+|||+.+...|.++|.+.+++++.+++....+ ....
T Consensus 69 ~~~~gv~~~~~~~v------~~~V~~~~~-~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~ 141 (460)
T 1cjc_A 69 ARSDRCAFYGNVEV------GRDVTVQEL-QDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAP 141 (460)
T ss_dssp HTSTTEEEEBSCCB------TTTBCHHHH-HHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC
T ss_pred HHhCCcEEEeeeEE------eeEEEeccc-eEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCcccccccc
Confidence 66789999988655 233444433 3689999999999963356677877788877654421100 0000
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEccCCcch--------------hh---
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL-DTTIIFPENHLL--------------QR--- 245 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~--------------------~~g~-~V~lv~~~~~~l--------------~~--- 245 (489)
...+++++|||+|++|+|+|..|. +.+. +|+++.+++.+. +.
T Consensus 142 ~~~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~ 221 (460)
T 1cjc_A 142 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRP 221 (460)
T ss_dssp CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCcee
Confidence 014789999999999999999998 5677 799999987651 10
Q ss_pred -----hh----------CH---HHHHHHHHHHHh--------------cCcEEEEcCceEEEEEeCCCC-cEEEEEeC--
Q 011267 246 -----LF----------TP---SLAQRYEQLYQQ--------------NGVKFVKVGASIKNLEAGSDG-RVAAVKLE-- 290 (489)
Q Consensus 246 -----~~----------~~---~~~~~l~~~l~~--------------~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~-- 290 (489)
.+ +. .+.+.+.+.+++ +||++++ ++.+++|..++++ ++..|++.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~~~~i~~~~~~~~v~~v~~~~~ 300 (460)
T 1cjc_A 222 MLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRF-FRSPQQVLPSPDGRRAAGIRLAVT 300 (460)
T ss_dssp ECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEEC-SEEEEEEEECTTSSSEEEEEEEEE
T ss_pred EechhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEEC-CCChheEEcCCCCceEEEEEEEEE
Confidence 01 11 133444455555 8999999 9999999854335 66556553
Q ss_pred -------------CC--cEEEcCEEEEccCCCCCCchhhhcCC-eec-CCcEEeCCCCCCC-CCCeEEeccccccCCccC
Q 011267 291 -------------DG--STIDADTIVIGIGAKPTVSPFERVGL-NSS-VGGIQVDGQFRTR-MPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 291 -------------~g--~~i~aD~vi~a~G~~p~~~~~~~~gl-~~~-~g~i~vd~~~~t~-~~~Iya~GD~a~~~~~~~ 352 (489)
+| ++++||.||+++|++|+. + .|+ +.+ ++++.||+++||+ .|+|||+|||+..+..
T Consensus 301 ~l~~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~-- 374 (460)
T 1cjc_A 301 RLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTG-- 374 (460)
T ss_dssp EEESSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTC--
T ss_pred EEccccCCCcccCCCceEEEEcCEEEECCCCCCCC-C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCc--
Confidence 34 579999999999999996 3 567 665 5789999999998 7999999999975432
Q ss_pred CcccccccHHHHHHHHHHHHHHHhc
Q 011267 353 DRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|+.+|..+|.+|++
T Consensus 375 -------~i~~a~~~g~~aa~~i~~ 392 (460)
T 1cjc_A 375 -------VITTTMTDSFLTGQILLQ 392 (460)
T ss_dssp -------CHHHHHHHHHHHHHHHHH
T ss_pred -------cHHHHHHHHHHHHHHHHH
Confidence 244577778888877764
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-32 Score=297.39 Aligned_cols=303 Identities=16% Similarity=0.175 Sum_probs=204.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..+.+||||||||+||++||..|++.|+ +|+|||+++..... +... ..+|+... .....
T Consensus 386 ~~~~~~VvIIGgGpAGl~aA~~L~~~G~---~Vtlie~~~~~GG~-------~~~~-----~~~pg~~~------~~~~~ 444 (729)
T 1o94_A 386 TKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGH-------LNQV-----AALPGLGE------WSYHR 444 (729)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTT-------HHHH-----TTSTTCGG------GHHHH
T ss_pred ccCCceEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCCcCCe-------eeec-----ccCCChHH------HHHHH
Confidence 3457899999999999999999999987 69999998764321 0000 00111110 01111
Q ss_pred hHHHHCCcEEE--eCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC-------CCCCCCCCC--CCceEeecCHHH
Q 011267 128 EWYKEKGIEMI--YQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS-------RFPEKIGGY--LPGVHYIRDVAD 196 (489)
Q Consensus 128 ~~~~~~~i~~~--~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~-------~~p~~~g~~--~~gv~~~~~~~~ 196 (489)
+++.+ .++.+ ....+..++. ++.+.++++.++.||+||+|||+.+. ..+.++|.+ .+++++. .+
T Consensus 445 ~~~~~-~i~~~~~~~~~~v~i~~-~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~---~~ 519 (729)
T 1o94_A 445 DYRET-QITKLLKKNKESQLALG-QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTP---EQ 519 (729)
T ss_dssp HHHHH-HHHHHHHHSTTCEEECS-CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECH---HH
T ss_pred HHHHH-HHHHhhcccCCceEEEe-CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEH---HH
Confidence 22211 11111 1112233333 23455555566899999999999842 234455644 4455443 22
Q ss_pred HHHHHHhhcCCCcEEEEC--CCHHHHHHHHHHHhCCCcEEEEccCCcchhh-hhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 197 ADALISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-LFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG--~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
. +......+++|+||| +|++|+|+|..|+++|.+|+++++.+ ++++ .++.. ...+.+.+++.||++++ ++.+
T Consensus 520 ~--l~~~~~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~-~~~~~~~l~~~GV~i~~-~~~v 594 (729)
T 1o94_A 520 V--MDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLE-YPNMMRRLHELHVEELG-DHFC 594 (729)
T ss_dssp H--HHCCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTC-HHHHHHHHHHTTCEEEC-SEEE
T ss_pred H--hcCCCCCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cccccccccc-HHHHHHHHHhCCCEEEc-CcEE
Confidence 2 222334578999999 99999999999999999999999998 6653 23333 45677889999999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCC-cE------------------EEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCC
Q 011267 274 KNLEAGSDGRVAAVKLEDG-ST------------------IDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTR 334 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g-~~------------------i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~ 334 (489)
+++.. ++......+.++ ++ ++||.||+|+|.+|++++++.++. .+|++++|+
T Consensus 595 ~~i~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~l~~-------~vd~~~~t~ 665 (729)
T 1o94_A 595 SRIEP--GRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNELKA-------RESEWAEND 665 (729)
T ss_dssp EEEET--TEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHHHHH-------TGGGTGGGT
T ss_pred EEEEC--CeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHHHhh-------hcccccccC
Confidence 99973 221111111233 33 999999999999999988776532 267899999
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCCCCCCcCCceeeecccccCCCcceeeeeecCC
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYFYSRVFEYEGSPRKVWWQFFGDN 411 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~ 411 (489)
+|+|||+|||+.. ..+..|..+|+.+|.+|.+. ..+...|| |++++++. +|++|..
T Consensus 666 ~~~VyAiGD~~~~-----------~~~~~A~~~G~~aA~~i~~~--l~~~~~p~-~~~~~~~~-------~~~~~~~ 721 (729)
T 1o94_A 666 IKGIYLIGDAEAP-----------RLIADATFTGHRVAREIEEA--NPQIAIPY-KRETIAWG-------TPHMPGG 721 (729)
T ss_dssp CCEEEECGGGTSC-----------CCHHHHHHHHHHHHHTTTSS--CTTSCCCC-CCCCCCTT-------CCSSTTC
T ss_pred CCCeEEEeCccch-----------hhHHHHHHHHHHHHHHhhhh--cccCCCCe-eeecccCc-------ccccCCC
Confidence 9999999999862 14567999999999999753 35667888 78888764 5667643
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.1e-31 Score=290.78 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=205.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.+||||||||+||++||.+|++.|+ +|+|||+++.........++.++ .+... .++.....+.+
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~---~V~lie~~~~~GG~~~~~~k~~i----------~~~~~---~~~~~~~~~~l 191 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGA---RVMLLDERAEAGGTLLDTAGEQI----------DGMDS---SAWIEQVTSEL 191 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSSGGGGGSSCCEE----------TTEEH---HHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCC---cEEEEeCCCCCCceeccCCcccc----------CCCCH---HHHHHHHHHHH
Confidence 5799999999999999999999986 79999998764311000011011 10000 00001112223
Q ss_pred HH-CCcEEEeCCcEEEEeCCCCEEEe-----------------CCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeec
Q 011267 131 KE-KGIEMIYQDPVTSIDIEKQTLIT-----------------NSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIR 192 (489)
Q Consensus 131 ~~-~~i~~~~~~~V~~id~~~~~v~~-----------------~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~ 192 (489)
.+ .+++++.+++|..++.++....+ .++.++.||+||||||+.|+ .+.++|.+.+++++..
T Consensus 192 ~~~~~v~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~-~~~ipG~~~~gv~~~~ 270 (965)
T 2gag_A 192 AEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHER-PIVFENNDRPGIMLAG 270 (965)
T ss_dssp HHSTTEEEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEEC-CCCCBTCCSTTEEEHH
T ss_pred hhcCCcEEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccC-CCCCCCCCCCCEEEhH
Confidence 44 48999998899998875432111 11236899999999999986 4556787788887764
Q ss_pred CHHHHHHHHHh--hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 193 DVADADALISS--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 193 ~~~~~~~~~~~--~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
+.. .+... ...+++++|||+|++|+|+|..|.++|.+|+++++.+++++. .+.+++.||++++ +
T Consensus 271 ~~~---~~l~~~~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----------~~~l~~~GV~v~~-~ 336 (965)
T 2gag_A 271 AVR---SYLNRYGVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----------AAQAVADGVQVIS-G 336 (965)
T ss_dssp HHH---HHHHTTCEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----------HHHHHHTTCCEEE-T
T ss_pred HHH---HHHHhcCCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----------HHHHHhCCeEEEe-C
Confidence 332 33322 235689999999999999999999999999999999877642 4568899999999 9
Q ss_pred ceEEEEEeCCCCcEEEEEeCC-------C--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCC-----CCCC
Q 011267 271 ASIKNLEAGSDGRVAAVKLED-------G--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFR-----TRMP 336 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~-------g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~-----t~~~ 336 (489)
+.++++...+++++..|++.+ | ++++||.||+++|++|++++++.. .+++.+|++++ |+.|
T Consensus 337 ~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~-----~g~i~vd~~~~~~v~~ts~p 411 (965)
T 2gag_A 337 SVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQR-----QGKLDWDTTIHAFVPADAVA 411 (965)
T ss_dssp EEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHT-----TCCEEEETTTTEEEECSCCT
T ss_pred CEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhC-----CCcEEEcCcccccccCCCCC
Confidence 999999853245666677654 5 679999999999999999887765 35799999887 8999
Q ss_pred CeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 337 GIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 337 ~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+|||+|||+..+. ...|..+|+.+|.+|++
T Consensus 412 ~IyAaGD~a~~~~-----------l~~A~~~G~~aA~~i~~ 441 (965)
T 2gag_A 412 NQHLAGAMTGRLD-----------TASALSTGAATGAAAAT 441 (965)
T ss_dssp TEEECGGGGTCCS-----------HHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCchh-----------HHHHHHHHHHHHHHHHH
Confidence 9999999997532 23588899999998864
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9e-32 Score=274.92 Aligned_cols=286 Identities=17% Similarity=0.190 Sum_probs=193.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHH-c------CCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVE-H------GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGG 122 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~-~------g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (489)
+++||+|||||+||++||..|++ . +. +|+|||+++.+ |... ..+ ..+.......+
T Consensus 2 ~~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~---~V~lie~~~~~-gg~~--~~g-v~p~~~~~~~~----------- 63 (456)
T 1lqt_A 2 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDM---AVDMLEMLPTP-WGLV--RSG-VAPDHPKIKSI----------- 63 (456)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHHHHHSTTCCE---EEEEEESSSSC-STHH--HHT-SCTTCTGGGGG-----------
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhCccccCCCC---eEEEEecCCCC-CCcc--ccc-cCCCCCCHHHH-----------
Confidence 46799999999999999999999 7 54 79999998763 3211 111 11110000000
Q ss_pred CCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCC-CCCCCCCCCCCCCceEeecCHHHHHH-H
Q 011267 123 ERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCT-ASRFPEKIGGYLPGVHYIRDVADADA-L 200 (489)
Q Consensus 123 ~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~-~~~~p~~~g~~~~gv~~~~~~~~~~~-~ 200 (489)
......++++.+++++.+..+ .+.|.+.++ ++.||+||+|||+. +. .+.++|.+.+++++.+++....+ .
T Consensus 64 ~~~~~~~~~~~~v~~~~~v~v------~~~v~~~~~-~~~~d~lViAtG~~~~~-~~~ipG~~~~gv~~~~~~~~~~~~~ 135 (456)
T 1lqt_A 64 SKQFEKTAEDPRFRFFGNVVV------GEHVQPGEL-SERYDAVIYAVGAQSDR-MLNIPGEDLPGSIAAVDFVGWYNAH 135 (456)
T ss_dssp HHHHHHHHTSTTEEEEESCCB------TTTBCHHHH-HHHSSEEEECCCCCEEC-CCCCTTTTSTTEEEHHHHHHHHTTC
T ss_pred HHHHHHHHhcCCCEEEeeEEE------CCEEEECCC-eEeCCEEEEeeCCCCCC-CCCCCCCCCCCcEEHHHHHhhhhcC
Confidence 122345566779999887543 234555555 47899999999997 44 45567776778776543321100 0
Q ss_pred H---Hhh--cCCCcEEEECCCHHHHHHHHHHHhC--------------------C-CcEEEEccCCcchhhhhCH-----
Q 011267 201 I---SSL--EKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-LDTTIIFPENHLLQRLFTP----- 249 (489)
Q Consensus 201 ~---~~~--~~~~~vvViG~G~~g~e~A~~l~~~--------------------g-~~V~lv~~~~~~l~~~~~~----- 249 (489)
. ..+ ..+++++|||+|++|+|+|..|.+. + .+|+++.+++.+...+..+
T Consensus 136 ~d~~~~~~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel 215 (456)
T 1lqt_A 136 PHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELREL 215 (456)
T ss_dssp GGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHG
T ss_pred cccccchhhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHh
Confidence 0 011 1478999999999999999999874 5 4899999987664321111
Q ss_pred -------------H------------------HHHHHHHHHHh------cCcEEEEcCceEEEEEeCCCCcEEEEEeC--
Q 011267 250 -------------S------------------LAQRYEQLYQQ------NGVKFVKVGASIKNLEAGSDGRVAAVKLE-- 290 (489)
Q Consensus 250 -------------~------------------~~~~l~~~l~~------~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-- 290 (489)
+ +.+.+.+.+++ +||++++ ++.++++..+ +++..|++.
T Consensus 216 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~-~~~~~~i~~~--~~v~~v~~~~~ 292 (456)
T 1lqt_A 216 ADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRF-LTSPIEIKGK--RKVERIVLGRN 292 (456)
T ss_dssp GGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEEC-SEEEEEEECS--SSCCEEEEEEE
T ss_pred hcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEe-CCCCeEEecC--CcEeEEEEEEE
Confidence 1 13445555555 7999999 9999999843 444445543
Q ss_pred --------------CC--cEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCC-CCCCCeEEeccccccCCccC
Q 011267 291 --------------DG--STIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFR-TRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 291 --------------~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~-t~~~~Iya~GD~a~~~~~~~ 352 (489)
+| ++++||.||+++|++|+. + .++..+ ++++.+|+++| |+.|+|||+|||+..+...
T Consensus 293 ~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~- 367 (456)
T 1lqt_A 293 ELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGV- 367 (456)
T ss_dssp EEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC-C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSC-
T ss_pred EecCCCcccccccCCCceEEEEcCEEEEccccccCC-C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchh-
Confidence 34 469999999999999986 3 456555 57899999999 7999999999999755421
Q ss_pred CcccccccHHHHHHHHHHHHHHHhc
Q 011267 353 DRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+..|+.+|..+|.+|++
T Consensus 368 --------i~~a~~~g~~~a~~i~~ 384 (456)
T 1lqt_A 368 --------IGTNKKDAQDTVDTLIK 384 (456)
T ss_dssp --------TTHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHH
Confidence 22366777777777754
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.9e-31 Score=271.65 Aligned_cols=253 Identities=16% Similarity=0.167 Sum_probs=190.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
++||||||||+||++||++|++. + +|+|||+++..++.....+..+.. +++ . ......++
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~---~V~vie~~~~~GG~~~~~~~~~~g--------~~~-~-------~~~~~~~l 167 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-L---TVALIEERGWLGGDMWLKGIKQEG--------FNK-D-------SRKVVEEL 167 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-C---CEEEECTTSSSSCSGGGTCSEETT--------TTE-E-------HHHHHHHH
T ss_pred cCCEEEECccHHHHHHHHHHHhc-C---CEEEEeCCCCCCCeeeccccccCC--------CCC-C-------HHHHHHHH
Confidence 46999999999999999999998 5 799999998876654322211100 000 0 00011122
Q ss_pred H---HCCcEEEeCCcEEEEeCCCCEEEe---CCCe--EEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHH
Q 011267 131 K---EKGIEMIYQDPVTSIDIEKQTLIT---NSGK--LLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALIS 202 (489)
Q Consensus 131 ~---~~~i~~~~~~~V~~id~~~~~v~~---~~g~--~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~ 202 (489)
. +.+++++.+++|..++.+.+.+.. .+++ ++.||+||+|||+.|. .+.+++.+.++++... +...+.+
T Consensus 168 ~~~l~~~v~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~-~~~~~g~~~~gv~~~~---~~~~~~~ 243 (493)
T 1y56_A 168 VGKLNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDS-TMLFENNDMPGVFRRD---FALEVMN 243 (493)
T ss_dssp HHTCCTTEEEETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEEC-CCCCTTTTSTTEEEHH---HHHHHHH
T ss_pred HHHHhcCCEEEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCcc-CCCCCCCCCCCEEEcH---HHHHHHH
Confidence 1 458899988888888877654332 4454 6899999999999987 4556787788887653 3444444
Q ss_pred h--hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 203 S--LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 203 ~--~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
. ...+++++|+|+|++|+| +.+++.||++++ ++.|+++..
T Consensus 244 ~~~~~~~~~vvViGgG~~gle-----------------------------------~~l~~~GV~v~~-~~~v~~i~~-- 285 (493)
T 1y56_A 244 VWEVAPGRKVAVTGSKADEVI-----------------------------------QELERWGIDYVH-IPNVKRVEG-- 285 (493)
T ss_dssp TSCBCSCSEEEEESTTHHHHH-----------------------------------HHHHHHTCEEEE-CSSEEEEEC--
T ss_pred hcccCCCCEEEEECCCHHHHH-----------------------------------HHHHhCCcEEEe-CCeeEEEec--
Confidence 3 235689999999999988 446778999999 999999984
Q ss_pred CCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCee--c-CCcEE-eCCCCCCCCCCeEEeccccccCCccCCccc
Q 011267 281 DGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS--S-VGGIQ-VDGQFRTRMPGIFAIGDVAAFPLKMYDRTA 356 (489)
Q Consensus 281 ~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~--~-~g~i~-vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~ 356 (489)
++.+..+.+.+|++++||.||+++|.+|++++++.+|++. + +|++. ||++++ +.|+|||+|||+..+
T Consensus 286 ~~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~~~~-s~~~vya~GD~~~~~-------- 356 (493)
T 1y56_A 286 NEKVERVIDMNNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDEYHR-IKDGIYVAGSAVSIK-------- 356 (493)
T ss_dssp SSSCCEEEETTCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCTTSE-EETTEEECSTTTCCC--------
T ss_pred CCceEEEEeCCCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeeccccccC-cCCCEEEEeccCCcc--------
Confidence 3445567888999999999999999999999999999865 2 45576 899999 999999999999742
Q ss_pred ccccHHHHHHHHHHHHHHHhc
Q 011267 357 RVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 357 ~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|..+|+.+|.++.+
T Consensus 357 ---~~~~A~~~g~~aa~~i~~ 374 (493)
T 1y56_A 357 ---PHYANYLEGKLVGAYILK 374 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH
Confidence 456688999999999875
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-30 Score=261.46 Aligned_cols=289 Identities=15% Similarity=0.150 Sum_probs=193.7
Q ss_pred CcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCC----CCC-CC-----------CccccCCCCCCCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAP----YER-PA-----------LTKGYLFPLDKKPARLP 112 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~li~~~~~~~----y~~-~~-----------l~~~~~~~~~~~~~~~~ 112 (489)
+||+|||||+||++||..|++ .|.+..+|+|||+++... |.. +. +...+..........++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 699999999999999999999 876212399999986542 211 00 00000000000000111
Q ss_pred CCcccc------C-----CCCCCCChhHHHHCCcE--EEeCCcEEEEeCCCC----EEEeCC---C--eEEeeCcEEecC
Q 011267 113 GFHTCV------G-----SGGERQTPEWYKEKGIE--MIYQDPVTSIDIEKQ----TLITNS---G--KLLKYGSLIVAT 170 (489)
Q Consensus 113 ~~~~~~------~-----~~~~~~~~~~~~~~~i~--~~~~~~V~~id~~~~----~v~~~~---g--~~i~yd~lvlAT 170 (489)
+++... . ........+++++.+++ ++++++|+.++.... +|++.+ | .++.||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 111000 0 00000112334556887 888889999986554 677654 4 578999999999
Q ss_pred C--CCCCCCCCCCCCCC-Cc-eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh
Q 011267 171 G--CTASRFPEKIGGYL-PG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL 246 (489)
Q Consensus 171 G--~~~~~~p~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~ 246 (489)
| +.|. .|.++|.+. ++ +....++.+.. ...+++|+|||+|.+|+|+|..|.+.|.+|+++++++.+++..
T Consensus 163 G~~s~p~-~p~ipG~~~~~g~~~hs~~~~~~~-----~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~ 236 (464)
T 2xve_A 163 GHFSTPY-VPEFEGFEKFGGRILHAHDFRDAL-----EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK 236 (464)
T ss_dssp CSSSSBC-CCCCBTTTTCCSEEEEGGGCCCGG-----GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC
T ss_pred CCCCCCc-cCCCCCcccCCceEEehhhhCCHh-----HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC
Confidence 9 6775 455566432 33 22222111111 1368999999999999999999999999999999998876642
Q ss_pred hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhh-cCCeecCCcE
Q 011267 247 FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER-VGLNSSVGGI 325 (489)
Q Consensus 247 ~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~-~gl~~~~g~i 325 (489)
+ ..||+++ ..|+++.. + .|.+.+|+++++|.||+|+|++|+.+++.. +++..++++.
T Consensus 237 ~-------------~~~V~~~---~~V~~i~~---~---~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~ 294 (464)
T 2xve_A 237 W-------------PENWDER---PNLVRVDT---E---NAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLW 294 (464)
T ss_dssp C-------------CTTEEEC---SCEEEECS---S---EEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSC
T ss_pred C-------------CCceEEc---CCeEEEeC---C---EEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcc
Confidence 2 2477764 57888852 2 478899999999999999999999998876 6887765422
Q ss_pred EeCCC---CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 326 QVDGQ---FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 326 ~vd~~---~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
+++.+ ++|+.|+|||+||++... .+..|..||+.+|++|.+..
T Consensus 295 v~~~~~~~~~t~~p~i~aiGd~~~~~-----------~~~~a~~qa~~~a~~l~G~~ 340 (464)
T 2xve_A 295 PLNLYKGVVWEDNPKFFYIGMQDQWY-----------SFNMFDAQAWYARDVIMGRL 340 (464)
T ss_dssp CSSEETTTEESSSTTEEECSCSCCSS-----------CHHHHHHHHHHHHHHHTTSS
T ss_pred cccccceEecCCCCCEEEEeCccccc-----------chHHHHHHHHHHHHHHcCCC
Confidence 24433 568999999999987631 45668899999999998643
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=283.25 Aligned_cols=273 Identities=18% Similarity=0.156 Sum_probs=194.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...++||||||||+||++||+.|++.|+ +|+|||+++...... ... ...+.......+ .....
T Consensus 388 ~~~~~~VvIIGgG~AGl~aA~~La~~G~---~V~liE~~~~~GG~~-~~~--~~~p~~~~~~~~-----------~~~~~ 450 (690)
T 3k30_A 388 KESDARVLVVGAGPSGLEAARALGVRGY---DVVLAEAGRDLGGRV-TQE--SALPGLSAWGRV-----------KEYRE 450 (690)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSCTHH-HHH--HTSTTCGGGGHH-----------HHHHH
T ss_pred ccccceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCCCCCCEe-eec--cCCCchhHHHHH-----------HHHHH
Confidence 3457899999999999999999999987 799999987643220 000 000100000000 01123
Q ss_pred hHHHHC-CcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCC-------CCCCCCCCCCceEeecCHHHHHH
Q 011267 128 EWYKEK-GIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR-------FPEKIGGYLPGVHYIRDVADADA 199 (489)
Q Consensus 128 ~~~~~~-~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~-------~p~~~g~~~~gv~~~~~~~~~~~ 199 (489)
..+.+. +++++++++++ ..++.++.||+||+|||+.+.. .|.++|.+.+.+.+. .+ .
T Consensus 451 ~~~~~~~gv~~~~~~~v~----------~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~---~~--~ 515 (690)
T 3k30_A 451 AVLAELPNVEIYRESPMT----------GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGP---DD--L 515 (690)
T ss_dssp HHHHTCTTEEEESSCCCC----------HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECH---HH--H
T ss_pred HHHHHcCCCEEEECCeec----------HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcH---HH--H
Confidence 344555 88888875432 2344557899999999998531 344455444444332 22 2
Q ss_pred HHHhhcCCCcEEEEC--CCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 200 LISSLEKAKKVVVVG--GGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 200 ~~~~~~~~~~vvViG--~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
+......+++++||| +|++|+|+|..|.+.|.+|+++++.+.+++...++.....+.+.+++.||++++ +++|++++
T Consensus 516 l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~-~~~V~~i~ 594 (690)
T 3k30_A 516 FAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVT-DHAVVAVG 594 (690)
T ss_dssp HTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEE-SEEEEEEE
T ss_pred hCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEc-CcEEEEEE
Confidence 222345678899999 999999999999999999999999998887655566778888999999999999 99999997
Q ss_pred eCCCCcEEEEE---eCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 278 AGSDGRVAAVK---LEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 278 ~~~~~~v~~v~---~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
. ++. .+. ..++++++||.||+|+|.+|++++++.++... . +|+.|+|||+|||+..+
T Consensus 595 ~--~~~--~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~l~~~~---~-------~t~~~~VyaiGD~~~~~------ 654 (690)
T 3k30_A 595 A--GGV--TVRDTYASIERELECDAVVMVTARLPREELYLDLVARR---D-------AGEIASVRGIGDAWAPG------ 654 (690)
T ss_dssp T--TEE--EEEETTTCCEEEEECSEEEEESCEEECCHHHHHHHHHH---H-------HTSCSEEEECGGGTSCB------
T ss_pred C--CeE--EEEEccCCeEEEEECCEEEECCCCCCChHHHHHHhhhh---c-------ccCCCCEEEEeCCCchh------
Confidence 3 221 222 23456899999999999999998877654321 1 78999999999999732
Q ss_pred ccccccHHHHHHHHHHHHHHHhcC
Q 011267 355 TARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
.+..|..+|+.+|.+|.+.
T Consensus 655 -----~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 655 -----TIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp -----CHHHHHHHHHHHHHHTTCC
T ss_pred -----hHHHHHHHHHHHHHHHHhh
Confidence 3456999999999999864
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-30 Score=262.81 Aligned_cols=314 Identities=14% Similarity=0.096 Sum_probs=191.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCCCCCCCCCCCCccccCCC--C------CCCCCCCCCCc---
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEAYAPYERPALTKGYLFP--L------DKKPARLPGFH--- 115 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~li~~~~~~~y~~~~l~~~~~~~--~------~~~~~~~~~~~--- 115 (489)
..+||||||||+||+++|..|++.|. . .+|+|||+++...|....+..+.... . ...+.....+.
T Consensus 29 ~~~dVvIIGaG~aGl~aA~~L~~~g~-~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l 107 (463)
T 3s5w_A 29 VVHDLIGVGFGPSNIALAIALQERAQ-AQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL 107 (463)
T ss_dssp CEESEEEECCSHHHHHHHHHHHHHHH-HHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHhccc-ccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence 45699999999999999999999982 2 47999999998765532221100000 0 00000000000
Q ss_pred cccC-------CCCC----CCC----hhHHHHCCcEEEeCCcEEEEeCC---CC----EEEeCCCe----EEeeCcEEec
Q 011267 116 TCVG-------SGGE----RQT----PEWYKEKGIEMIYQDPVTSIDIE---KQ----TLITNSGK----LLKYGSLIVA 169 (489)
Q Consensus 116 ~~~~-------~~~~----~~~----~~~~~~~~i~~~~~~~V~~id~~---~~----~v~~~~g~----~i~yd~lvlA 169 (489)
...+ .... ... ..+.++.+++++.+++|+.++++ .+ +|.+.+|. ++.||+||+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 0000 0000 000 11223457889999899999875 43 66666665 7999999999
Q ss_pred CCCCCCCCCC-CCCCCCC-ceEeecCHHH-HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchh
Q 011267 170 TGCTASRFPE-KIGGYLP-GVHYIRDVAD-ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ 244 (489)
Q Consensus 170 TG~~~~~~p~-~~g~~~~-gv~~~~~~~~-~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~ 244 (489)
||+.|. .|. .++.... .+.....+.+ .+.+......+++|+|||+|.+|+|+|..|.+. +.+|+++++.+.+++
T Consensus 188 tG~~p~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p 266 (463)
T 3s5w_A 188 PGGTPR-IPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP 266 (463)
T ss_dssp CCCEEC-CCGGGGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCB
T ss_pred CCCCCC-CcchhhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcC
Confidence 999876 343 2221111 2332222211 122211122578999999999999999999998 889999999987643
Q ss_pred h--------h-----------hCHHHHHHHHHHHHh--------------------------cCcEEEEcCceEEEEEeC
Q 011267 245 R--------L-----------FTPSLAQRYEQLYQQ--------------------------NGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 245 ~--------~-----------~~~~~~~~l~~~l~~--------------------------~Gv~~~~~~~~v~~i~~~ 279 (489)
. . +++.....+.+.+.. .||++++ ++.|+++..+
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~-~~~v~~v~~~ 345 (463)
T 3s5w_A 267 ADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRC-MTTVERATAT 345 (463)
T ss_dssp CCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEET-TEEEEEEEEE
T ss_pred ccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEe-CCEEEEEEec
Confidence 1 1 122222222222222 5999999 9999999864
Q ss_pred CCCcEEEEEeC---CCc--EEEcCEEEEccCCCCC--CchhhhcCCeecCCcEEeCCCCCCC-----CCCeEEecccccc
Q 011267 280 SDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT--VSPFERVGLNSSVGGIQVDGQFRTR-----MPGIFAIGDVAAF 347 (489)
Q Consensus 280 ~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~--~~~~~~~gl~~~~g~i~vd~~~~t~-----~~~Iya~GD~a~~ 347 (489)
++ . ..+.+. +|+ ++++|.||+|+|++|+ .++++.+.... |++.||+++++. .|+|||+|||...
T Consensus 346 ~~-~-~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~--g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~~ 421 (463)
T 3s5w_A 346 AQ-G-IELALRDAGSGELSVETYDAVILATGYERQLHRQLLEPLAEYL--GDHEIGRDYRLQTDERCKVAIYAQGFSQAS 421 (463)
T ss_dssp TT-E-EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGGGGGGB--C--CCCTTSBCCBCTTBCSEEEESSCCHHH
T ss_pred CC-E-EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHHHHHHh--CCcccCcccccccCCCCCCeEEEcCCCccc
Confidence 33 2 345655 665 4999999999999999 67777665443 789999999974 4679999999864
Q ss_pred CCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 348 PLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 348 ~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
.+.... ..-..|..++.+++..+
T Consensus 422 ~g~~~~-----~l~~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 422 HGLSDT-----LLSVLPVRAEEISGSLY 444 (463)
T ss_dssp HCTTTT-----SSTTHHHHHHHHHHHHH
T ss_pred CCcCcc-----chhHHHHHHHHHHHHHH
Confidence 332111 11123556666554443
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=269.23 Aligned_cols=262 Identities=18% Similarity=0.202 Sum_probs=187.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...++||||||||+||++||..|++.|+ +|+|||+++..++. ..+.. .+ +... .+ ... .....
T Consensus 370 ~~~~~~vvIIGgG~AGl~aA~~l~~~g~---~V~lie~~~~~gg~-~~~~~-~~-~~~~---~~---~~~-----~~~~~ 432 (671)
T 1ps9_A 370 AVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQ-FNIAK-QI-PGKE---EF---YET-----LRYYR 432 (671)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTT-HHHHT-TS-TTCT---TH---HHH-----HHHHH
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCCCCCCe-eeccc-cC-CCHH---HH---HHH-----HHHHH
Confidence 3457899999999999999999999876 79999998876543 11111 00 1000 00 000 01123
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEE-eeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcC
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLL-KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i-~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 206 (489)
.++++.++++++++.|.. ..+ .||+||+|||+.|. .|.++|.+.+++++.. +.+......
T Consensus 433 ~~~~~~gv~~~~~~~v~~-------------~~~~~~d~lviAtG~~p~-~~~i~G~~~~~v~~~~-----~~l~~~~~~ 493 (671)
T 1ps9_A 433 RMIEVTGVTLKLNHTVTA-------------DQLQAFDETILASGIVPR-TPPIDGIDHPKVLSYL-----DVLRDKAPV 493 (671)
T ss_dssp HHHHHHTCEEEESCCCCS-------------SSSCCSSEEEECCCEEEC-CCCCBTTTSTTEEEHH-----HHHTSCCCC
T ss_pred HHHHHcCCEEEeCcEecH-------------HHhhcCCEEEEccCCCcC-CCCCCCCCCCcEeeHH-----HHhhCCCCC
Confidence 455678999999875531 113 89999999999887 4556675555565431 222222346
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-------------------------------------cEEEEccCCcchhhhhCH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL-------------------------------------DTTIIFPENHLLQRLFTP 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~-------------------------------------~V~lv~~~~~~l~~~~~~ 249 (489)
+++++|||+|++|+|+|..|.+.|. +|+++++.+..+...+++
T Consensus 494 ~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~ 573 (671)
T 1ps9_A 494 GNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGK 573 (671)
T ss_dssp CSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCT
T ss_pred CCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhcccccc
Confidence 7899999999999999999998773 456777766666656777
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEe
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 327 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~v 327 (489)
.....+.+.+++.||++++ +++++++.. ++ + .+. .+| +++++|.||+|+|++|++++++.+.
T Consensus 574 ~~~~~~~~~l~~~GV~v~~-~~~v~~i~~--~~-v-~~~-~~G~~~~i~~D~Vi~a~G~~p~~~l~~~l~---------- 637 (671)
T 1ps9_A 574 TTGWIHRTTLLSRGVKMIP-GVSYQKIDD--DG-L-HVV-INGETQVLAVDNVVICAGQEPNRALAQPLI---------- 637 (671)
T ss_dssp TTHHHHHHHHHHTTCEEEC-SCEEEEEET--TE-E-EEE-ETTEEEEECCSEEEECCCEEECCTTHHHHH----------
T ss_pred ccHHHHHHHHHhcCCEEEe-CcEEEEEeC--Ce-E-EEe-cCCeEEEEeCCEEEECCCccccHHHHHHHH----------
Confidence 7777888999999999999 999999972 22 2 222 567 5799999999999999998876541
Q ss_pred CCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 328 DGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 328 d~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
...++||++|||+..... .+..|..+|..+|.||
T Consensus 638 -----~~g~~v~aiGD~~~~~~~---------~~~~A~~~g~~aA~~i 671 (671)
T 1ps9_A 638 -----DSGKTVHLIGGCDVAMEL---------DARRAIAQGTRLALEI 671 (671)
T ss_dssp -----TTTCCEEECGGGTCCSSC---------CHHHHHHHHHHHHHHC
T ss_pred -----hcCCCEEEECCcCccCch---------hHHHHHHHHHHHHHhC
Confidence 122689999999975421 4677999999999875
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-28 Score=249.78 Aligned_cols=289 Identities=12% Similarity=0.088 Sum_probs=188.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC----CCCC-C----Ccc--------ccCC----C--CC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP----YERP-A----LTK--------GYLF----P--LD 105 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~----y~~~-~----l~~--------~~~~----~--~~ 105 (489)
++.+||+|||||++|+++|..|++.|. ..+|+|+|+.+... |... . ++. .+.. . ..
T Consensus 4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~-~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 4 PTIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCCEEEEECccHHHHHHHHHHHhcCC-CCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 356899999999999999999999986 45799999986432 2110 0 000 0000 0 00
Q ss_pred CCCC-----------CCCCCccccCCCCC-------CCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCC---Ce---
Q 011267 106 KKPA-----------RLPGFHTCVGSGGE-------RQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNS---GK--- 159 (489)
Q Consensus 106 ~~~~-----------~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~---g~--- 159 (489)
.... .+.+++........ ....++.++.+..++++++|+.++.... +|++.+ |.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 0000 00000000000000 0011223344667888899999987554 566654 65
Q ss_pred EEeeCcEEecCCC--CCCCCCCCCCCC-----CCc-eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCC
Q 011267 160 LLKYGSLIVATGC--TASRFPEKIGGY-----LPG-VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKL 231 (489)
Q Consensus 160 ~i~yd~lvlATG~--~~~~~p~~~g~~-----~~g-v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~ 231 (489)
++.||+||+|||. .|. .|.++|.+ .++ +.+.+++.+.. ...+++|+|||+|++|+|+|..|.+.+.
T Consensus 163 ~~~~d~VVvAtG~~s~p~-~p~i~G~~~~~~~~~g~v~~~~~~~~~~-----~~~~k~VvVvG~G~sg~e~A~~l~~~~~ 236 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPY-IPNIKGLDEYAKAVPGSVLHSSLFREPE-----LFVGESVLVVGGASSANDLVRHLTPVAK 236 (447)
T ss_dssp EEEESEEEECCCSSSSBC-BCCCBTHHHHHHHSTTSEEEGGGCCCGG-----GGTTCCEEEECSSHHHHHHHHHHTTTSC
T ss_pred EEEeCEEEECCCCCCCCC-CCCCCChhhhhccCCccEEEecccCChh-----hcCCCEEEEEccCcCHHHHHHHHHHHhC
Confidence 7999999999998 554 44444421 122 33332222211 1258999999999999999999999999
Q ss_pred c-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcE-EEcCEEEEccCCCCC
Q 011267 232 D-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST-IDADTIVIGIGAKPT 309 (489)
Q Consensus 232 ~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~-i~aD~vi~a~G~~p~ 309 (489)
+ |+++++.+.+ +++.||. . +..|+++..+ ++ .|++.||++ +++|.||+|+|++|+
T Consensus 237 ~~V~l~~r~~~~----------------l~~~~i~--~-~~~v~~~~~~-~~---~v~~~dG~~~~~~D~vi~atG~~~~ 293 (447)
T 2gv8_A 237 HPIYQSLLGGGD----------------IQNESLQ--Q-VPEITKFDPT-TR---EIYLKGGKVLSNIDRVIYCTGYLYS 293 (447)
T ss_dssp SSEEEECTTCCS----------------CBCSSEE--E-ECCEEEEETT-TT---EEEETTTEEECCCSEEEECCCBCCC
T ss_pred CcEEEEeCCCCc----------------CCCCCeE--E-ecCeEEEecC-CC---EEEECCCCEeccCCEEEECCCCCcC
Confidence 9 9999998755 3456776 4 5788898632 22 578899976 799999999999999
Q ss_pred Cch-----hhhc--CCeecCCcEEeCCCCC---CCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 310 VSP-----FERV--GLNSSVGGIQVDGQFR---TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 310 ~~~-----~~~~--gl~~~~g~i~vd~~~~---t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
+++ ++.+ ++..+ +.+.++.+.+ +++|+||++||+.... .+..|..||+.+|++|.+..
T Consensus 294 ~~~l~~~~l~~~~~~i~~~-~~~~~~~~~~v~~~~~p~l~~~G~~~~~~-----------~~~~a~~qa~~~a~~~~g~~ 361 (447)
T 2gv8_A 294 VPFPSLAKLKSPETKLIDD-GSHVHNVYQHIFYIPDPTLAFVGLALHVV-----------PFPTSQAQAAFLARVWSGRL 361 (447)
T ss_dssp CCCHHHHSCCSTTTCCCSS-SSSCCSEETTTEETTCTTEEESSCCBSSC-----------HHHHHHHHHHHHHHHHTTSS
T ss_pred CCCCcccccccccCceecC-CCcccccccccccCCCCcEEEEecccccc-----------CchHHHHHHHHHHHHHcCCC
Confidence 999 7654 33332 3445555555 6899999999997531 45668899999999998643
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=239.78 Aligned_cols=299 Identities=16% Similarity=0.226 Sum_probs=186.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHH-HcCCCCCcEEEEcCCCCCCC-----CCCCC----c-cccCCCCCCC---CCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFV-EHGMADGRLCIVSKEAYAPY-----ERPAL----T-KGYLFPLDKK---PARLPGF 114 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~-~~g~~~~~V~li~~~~~~~y-----~~~~l----~-~~~~~~~~~~---~~~~~~~ 114 (489)
++++||||||||+||+++|..|+ +.|. +|+|||+++.... ..|.. . ..+.+..... ...+...
T Consensus 6 ~~~~dVvIIGaG~aGl~aA~~L~~~~G~---~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~ 82 (540)
T 3gwf_A 6 THTVDAVVIGAGFGGIYAVHKLHHELGL---TTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT 82 (540)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHTTCC---CEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHcCCC---CEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc
Confidence 34579999999999999999999 8775 7999999765431 11111 0 0011100000 0000000
Q ss_pred ccccCCCCCCCChhHHHHCCc--EEEeCCcEEEEeCCCC----EEEeCCCeEEeeCcEEecCC--CCCCCCCCCCCCC-C
Q 011267 115 HTCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-L 185 (489)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~~----~v~~~~g~~i~yd~lvlATG--~~~~~~p~~~g~~-~ 185 (489)
...............+++++ .++++++|++++.+.. +|.+.+|+++.||+||+||| +.|. .|.++|.+ .
T Consensus 83 -~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f 160 (540)
T 3gwf_A 83 -YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAIN-FPNLPGLDTF 160 (540)
T ss_dssp -EEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBC-CCCCTTGGGC
T ss_pred -CCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCC-CCCCCCcccc
Confidence 00000001112334566787 7888999999987655 78889999999999999999 4665 45555532 2
Q ss_pred Cce--EeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-hhh---hhCHHHHHHHH---
Q 011267 186 PGV--HYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQR---LFTPSLAQRYE--- 256 (489)
Q Consensus 186 ~gv--~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-l~~---~~~~~~~~~l~--- 256 (489)
.+. ++.+... .....+++|+|||+|.+|+|+|..|++.+.+|+++++.+.+ ++. .+.+...+.++
T Consensus 161 ~g~~~~~~~~~~------~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~ 234 (540)
T 3gwf_A 161 EGETIHTAAWPE------GKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADY 234 (540)
T ss_dssp CSEEEEGGGCCS------SCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTH
T ss_pred CCCEEEeecCCC------ccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhcc
Confidence 232 2111111 12246799999999999999999999999999999999873 221 01111111111
Q ss_pred ----------------------------------------------------------------------HH--------
Q 011267 257 ----------------------------------------------------------------------QL-------- 258 (489)
Q Consensus 257 ----------------------------------------------------------------------~~-------- 258 (489)
+.
T Consensus 235 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp 314 (540)
T 3gwf_A 235 DRIWERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDP 314 (540)
T ss_dssp HHHHHHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCH
Confidence 01
Q ss_pred -------------------------HHhcCcEEEEc-CceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch
Q 011267 259 -------------------------YQQNGVKFVKV-GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312 (489)
Q Consensus 259 -------------------------l~~~Gv~~~~~-~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~ 312 (489)
+.+.+|+++.. +..|++|..+ +|+++||+++++|.||+|||+.+++.+
T Consensus 315 ~~~~~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~------gv~~~dG~~~~~DvIV~ATGf~~~~~~ 388 (540)
T 3gwf_A 315 ETARKLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAK------GVVTEDGVLHELDVLVFATGFDAVDGN 388 (540)
T ss_dssp HHHHHHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSS------EEEETTCCEEECSEEEECCCBSCSSHH
T ss_pred HHHHhCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecC------eEEcCCCCEEECCEEEECCccCccccC
Confidence 11447888710 3688888643 688999999999999999999998767
Q ss_pred hhhcCCeecCCcEEeCCC----------CC-CCCCCeEEe-ccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 313 FERVGLNSSVGGIQVDGQ----------FR-TRMPGIFAI-GDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 313 ~~~~gl~~~~g~i~vd~~----------~~-t~~~~Iya~-GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
+...++... +|+.+++. +. .+.||+|.+ |..+. .. .....+..|++.+++.|
T Consensus 389 ~~~~~i~g~-~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~-~~---------s~~~~~e~q~~~i~~~i 452 (540)
T 3gwf_A 389 YRRIEIRGR-DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP-FT---------NLPPSIETQVEWISDTI 452 (540)
T ss_dssp HHTSEEECG-GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB-CS---------CHHHHHHHHHHHHHHHH
T ss_pred cCcceEECC-CCcCHHHhhccChhhccccccCCCCceEEEecCCCC-Cc---------cHHHHHHHHHHHHHHHH
Confidence 766555432 45555532 22 278999999 87654 11 11233555666666655
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.3e-24 Score=224.91 Aligned_cols=275 Identities=17% Similarity=0.247 Sum_probs=172.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CC-CC----Ccc-ccCCCCCCC---CCCCCCCc
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----ER-PA----LTK-GYLFPLDKK---PARLPGFH 115 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y----~~-~~----l~~-~~~~~~~~~---~~~~~~~~ 115 (489)
+.++||||||||+||+++|.+|++.|. +|+|||+++.... ++ |. ... .+.+..... ...+...
T Consensus 19 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~- 94 (549)
T 4ap3_A 19 TTSYDVVVVGAGIAGLYAIHRFRSQGL---TVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEK- 94 (549)
T ss_dssp -CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSS-
T ss_pred CCCCCEEEECchHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccC-
Confidence 346799999999999999999999876 7999999765431 10 11 110 000000000 0000000
Q ss_pred cccCCCCCCCChhHHHHCCc--EEEeCCcEEEEeCCCC----EEEeCCCeEEeeCcEEecCC--CCCCCCCCCCCCC-CC
Q 011267 116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP 186 (489)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~~----~v~~~~g~~i~yd~lvlATG--~~~~~~p~~~g~~-~~ 186 (489)
..............+++.++ .++++++|++++.+.. +|.+.+|+++.||+||+||| +.|. .|.++|.+ ..
T Consensus 95 ~~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~-~p~ipG~~~f~ 173 (549)
T 4ap3_A 95 YATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNAN-TPAFDGLDRFT 173 (549)
T ss_dssp SCBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECC-CCCCTTGGGCC
T ss_pred CCCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence 00000000112234556777 7888999999987655 88899999999999999999 6665 45555533 22
Q ss_pred ceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-hhhhhCHHHH-------------
Q 011267 187 GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-LQRLFTPSLA------------- 252 (489)
Q Consensus 187 gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-l~~~~~~~~~------------- 252 (489)
+..........+ .....+++|+|||+|.+|+|+|..|++.+.+|++++|.+.+ ++. .++.+.
T Consensus 174 g~~~~~~~~~~~---~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~-~~~~~~~~~~~~l~~~~~~ 249 (549)
T 4ap3_A 174 GDIVHTARWPHD---GVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPA-GNVPLDDATRAEQKANYAE 249 (549)
T ss_dssp SEEEEGGGCCTT---CCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEEC-C----CHHHHHHHHHTHHH
T ss_pred CceEEecccccc---ccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccC-cCCCCCHHHHHHHHhccHH
Confidence 321111000000 01126899999999999999999999999999999999864 221 111111
Q ss_pred --------------------------------------------------------------HHHHHH------------
Q 011267 253 --------------------------------------------------------------QRYEQL------------ 258 (489)
Q Consensus 253 --------------------------------------------------------------~~l~~~------------ 258 (489)
+.+.+.
T Consensus 250 ~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 329 (549)
T 4ap3_A 250 RRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAE 329 (549)
T ss_dssp HHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 001111
Q ss_pred -----------------------HHhcCcEEE--EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 259 -----------------------YQQNGVKFV--KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 259 -----------------------l~~~Gv~~~--~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
+.+.+|+++ . ...|++|..+ +|++++| ++++|.||+|||+.+++.++
T Consensus 330 ~l~P~~~~~~~kR~~~~~~y~~al~~~~V~lvd~~-~~~I~~it~~------gv~~~dG-~~~~D~iI~ATGf~~~~~~~ 401 (549)
T 4ap3_A 330 LLTPKDHAIGAKRIVLDSGYYETYNRDNVELVDLR-STPIVGMDET------GIVTTGA-HYDLDMIVLATGFDAMTGSL 401 (549)
T ss_dssp HHSCSSCCBTTBCCEEESSTGGGGGSTTEEEEETT-TSCEEEEETT------EEEESSC-EEECSEEEECCCEEESSTTG
T ss_pred hCCCCCCCCCccccCCCccHHHHhcCCCEEEEeCC-CCCceEEeCC------cEEeCCC-ceecCEEEECCccccccccc
Confidence 223378887 2 3788888743 5889999 99999999999999987666
Q ss_pred hhcCCeecCCcEEeCCCCC-----------CCCCCeEEe
Q 011267 314 ERVGLNSSVGGIQVDGQFR-----------TRMPGIFAI 341 (489)
Q Consensus 314 ~~~gl~~~~g~i~vd~~~~-----------t~~~~Iya~ 341 (489)
....+.. ++|+.+++.++ .+.||+|.+
T Consensus 402 ~~~~i~g-~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~ 439 (549)
T 4ap3_A 402 DKLEIVG-RGGRTLKETWAAGPRTYLGLGIDGFPNFFNL 439 (549)
T ss_dssp GGSEEEC-GGGCBHHHHTTTSCCCBTTTBCTTCTTEEET
T ss_pred CceeEEC-CCCcCHHHhhccchhhccccccCCCCcEEEE
Confidence 6655542 35666664322 267898886
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-25 Score=229.55 Aligned_cols=189 Identities=17% Similarity=0.174 Sum_probs=116.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC-------C--CCCCCcc---ccCCCCCC-CCCCCCCCc
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP-------Y--ERPALTK---GYLFPLDK-KPARLPGFH 115 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~-------y--~~~~l~~---~~~~~~~~-~~~~~~~~~ 115 (489)
+..+||||||||+||+++|.+|++.|. +|+|||+++... | .+..... .+.+.... ....+....
T Consensus 7 ~~~~dVvIIGaG~aGl~aA~~L~~~g~---~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~ 83 (545)
T 3uox_A 7 SPALDAVVIGAGVTGIYQAFLINQAGM---KVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF 83 (545)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence 456899999999999999999999876 799999986542 1 1111100 00000000 000000000
Q ss_pred cccCCCCCCCChhHHHHCCc--EEEeCCcEEEEeCCCC----EEEeCCCeEEeeCcEEecCC--CCCCCCCCCCCCC-CC
Q 011267 116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVATG--CTASRFPEKIGGY-LP 186 (489)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~~~~----~v~~~~g~~i~yd~lvlATG--~~~~~~p~~~g~~-~~ 186 (489)
..............+++++ .++++++|+.++.+.. .|.+.+|+++.||+||+||| +.|. .|.++|.+ ..
T Consensus 84 -~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~-~p~ipG~~~f~ 161 (545)
T 3uox_A 84 -ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASR-MPDIKGIDSFK 161 (545)
T ss_dssp -CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCC
T ss_pred -CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCc-CCCCCCccccC
Confidence 0000000112233455666 6888899999987654 88899999999999999999 6665 45555532 22
Q ss_pred c--eEeecCHHHHHHHH-HhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 187 G--VHYIRDVADADALI-SSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 187 g--v~~~~~~~~~~~~~-~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+ ++..+...+..... .....+++|+|||+|.+|+|+|..|++.+.+|+++.+.+++
T Consensus 162 g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~ 220 (545)
T 3uox_A 162 GESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNW 220 (545)
T ss_dssp SEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCC
T ss_pred CCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCc
Confidence 2 22211111100000 01235789999999999999999999999999999998863
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=219.93 Aligned_cols=301 Identities=16% Similarity=0.222 Sum_probs=182.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----C-CCCCc---cccCCCCCCCC-----CCCCCCc
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----E-RPALT---KGYLFPLDKKP-----ARLPGFH 115 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y----~-~~~l~---~~~~~~~~~~~-----~~~~~~~ 115 (489)
+..+||+|||||++|+++|.+|++.|. +|+|+|+++.... . .|... ....+...-.+ ..++..
T Consensus 14 ~~~~dVvIIGaG~aGl~aA~~L~~~G~---~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~- 89 (542)
T 1w4x_A 14 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER- 89 (542)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS-
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccc-
Confidence 346799999999999999999999986 7999999875421 0 01110 00000000000 000000
Q ss_pred cccCCCCCCCChhHHHHCC--cEEEeCCcEEEEeCCC----CEEEeCCCeEEeeCcEEecCCC--CCCCCCCCCCCC-CC
Q 011267 116 TCVGSGGERQTPEWYKEKG--IEMIYQDPVTSIDIEK----QTLITNSGKLLKYGSLIVATGC--TASRFPEKIGGY-LP 186 (489)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~--i~~~~~~~V~~id~~~----~~v~~~~g~~i~yd~lvlATG~--~~~~~p~~~g~~-~~ 186 (489)
...............++.+ ..++++++|++++.+. .+|++.+|+++.||+||+|||. .|. .|.++|.+ ..
T Consensus 90 ~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~-~p~i~G~~~f~ 168 (542)
T 1w4x_A 90 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQ-LPNFPGLKDFA 168 (542)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCC-CCCCTTGGGCC
T ss_pred cCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCC-CCCCCCcccCC
Confidence 0000000001112234444 5688889999987643 3678888988999999999995 454 45555532 33
Q ss_pred c--eEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-hhh---hCHHH---------
Q 011267 187 G--VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-QRL---FTPSL--------- 251 (489)
Q Consensus 187 g--v~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-~~~---~~~~~--------- 251 (489)
+ +++.+...+. ....+++|+|||+|.+|+|+|..+++.+.+|+++.|.+.+. ++. +.+..
T Consensus 169 G~~~hs~~~~~~~-----~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p 243 (542)
T 1w4x_A 169 GNLYHTGNWPHEP-----VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYA 243 (542)
T ss_dssp SEEEEGGGCCSSC-----CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHH
T ss_pred CceEECCCCCCch-----hccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCH
Confidence 4 2221111010 11358999999999999999999999999999999887552 210 01100
Q ss_pred --------------------------------------------------------------HHHHHHH-----------
Q 011267 252 --------------------------------------------------------------AQRYEQL----------- 258 (489)
Q Consensus 252 --------------------------------------------------------------~~~l~~~----------- 258 (489)
.+.+.+.
T Consensus 244 ~l~~~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (542)
T 1w4x_A 244 EFREESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVA 323 (542)
T ss_dssp HHHHHHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHH
T ss_pred HHHHHHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 0111111
Q ss_pred ------------------------HHhcCcEEE--EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch
Q 011267 259 ------------------------YQQNGVKFV--KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312 (489)
Q Consensus 259 ------------------------l~~~Gv~~~--~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~ 312 (489)
+.+.+|+++ . +..|+++..+ +|+++| +++++|.||+|||+++++.+
T Consensus 324 ~~l~P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~-~~~i~~i~~~------gv~~~d-~~~~~D~ii~atG~~~~~~~ 395 (542)
T 1w4x_A 324 ERLVPKGYPFGTKRLILEIDYYEMFNRDNVHLVDTL-SAPIETITPR------GVRTSE-REYELDSLVLATGFDALTGA 395 (542)
T ss_dssp HHHSCCSSCSSSSCCEEESSHHHHTTSTTEEEEETT-TSCEEEECSS------EEEESS-CEEECSEEEECCCCCCTTHH
T ss_pred HhcCCCCCCccccCCCCCccHHHHhCCCCEEEEecC-CCCceEEcCC------eEEeCC-eEEecCEEEEcCCccccccC
Confidence 112357776 3 4678888632 588899 89999999999999998888
Q ss_pred hhhcCCeecCCcEEeCCCCC----------C-CCCCeEEe-ccccccCCccCCcccccccH-HHHHHHHHHHHHHHhc
Q 011267 313 FERVGLNSSVGGIQVDGQFR----------T-RMPGIFAI-GDVAAFPLKMYDRTARVEHV-DHARQSAQHCIKALLS 377 (489)
Q Consensus 313 ~~~~gl~~~~g~i~vd~~~~----------t-~~~~Iya~-GD~a~~~~~~~~~~~~~~~~-~~A~~~g~~~a~~l~~ 377 (489)
+...++... +|+.+++.++ + +.||+|++ |+.+.. ...+| ..+..|++.++++|..
T Consensus 396 ~~~~~i~g~-~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~---------~~~~~~~~~e~q~~~ia~~i~~ 463 (542)
T 1w4x_A 396 LFKIDIRGV-GNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPS---------ALSNMLVSIEQHVEWVTDHIAY 463 (542)
T ss_dssp HHTSEEECG-GGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSG---------GGSCHHHHHHHHHHHHHHHHHH
T ss_pred cCceeeECC-CCCCHHHhhcCchheecccccCCCCceEEEcCCCCCc---------ccccHHHHHHHHHHHHHHHHHH
Confidence 777655443 4666665332 1 45666665 665421 12344 5677889988888753
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-21 Score=174.94 Aligned_cols=153 Identities=22% Similarity=0.229 Sum_probs=130.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh--------hh-----CHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR--------LF-----TPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~--------~~-----~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+++|||+|++|+++|..|.+.|.+|+++++.+.++.+ .+ ++++.+.+.+.+++.|+++++ + +|++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~-~-~v~~ 80 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRP-G-VVKG 80 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEE-C-CCCE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEe-C-EEEE
Confidence 6899999999999999999999999999998766532 12 478889999999999999999 8 9999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRT 355 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~ 355 (489)
++.++++ ..+.+++| ++++|.||+|+|.+|+ +++.+|++.++|.+.||+++||+.|+|||+|||+..+.+
T Consensus 81 i~~~~~~--~~v~~~~g-~i~ad~vI~A~G~~~~--~~~~~g~~~~~g~i~vd~~~~t~~~~i~a~GD~~~~~~~----- 150 (180)
T 2ywl_A 81 VRDMGGV--FEVETEEG-VEKAERLLLCTHKDPT--LPSLLGLTRRGAYIDTDEGGRTSYPRVYAAGVARGKVPG----- 150 (180)
T ss_dssp EEECSSS--EEEECSSC-EEEEEEEEECCTTCCH--HHHHHTCCEETTEECCCTTCBCSSTTEEECGGGGTCCSC-----
T ss_pred EEEcCCE--EEEEECCC-EEEECEEEECCCCCCC--ccccCCCCccCceEEeCCCCCcCCCCEEEeecccCcchh-----
Confidence 9865433 35778888 8999999999999984 567888887756688999999999999999999986531
Q ss_pred cccccHHHHHHHHHHHHHHHhc
Q 011267 356 ARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 356 ~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
.+..|..+|+.+|.||.+
T Consensus 151 ----~~~~A~~~g~~aa~~i~~ 168 (180)
T 2ywl_A 151 ----HAIISAGDGAYVAVHLVS 168 (180)
T ss_dssp ----CHHHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHhHHHHHHHHHH
Confidence 556788999999999975
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.5e-18 Score=174.16 Aligned_cols=293 Identities=16% Similarity=0.215 Sum_probs=161.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCC-----------CCcEEEEcCCCCCCCCCCCCccccCC----------CCC-C
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMA-----------DGRLCIVSKEAYAPYERPALTKGYLF----------PLD-K 106 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~-----------~~~V~li~~~~~~~y~~~~l~~~~~~----------~~~-~ 106 (489)
...+||||||+||+||++|..|++.+.+ ....+.+|+.+.+.|+..++..+.-. ..+ .
T Consensus 37 ~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~ 116 (501)
T 4b63_A 37 DELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPR 116 (501)
T ss_dssp TSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTT
T ss_pred CCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCC
Confidence 3468999999999999999999886531 23567888887766543222111000 000 0
Q ss_pred CCCCCC----------CCccccC----CCCCCCChhHH-HHCCcEEEeCCcEEEEeCCC----------CEEEeCCC---
Q 011267 107 KPARLP----------GFHTCVG----SGGERQTPEWY-KEKGIEMIYQDPVTSIDIEK----------QTLITNSG--- 158 (489)
Q Consensus 107 ~~~~~~----------~~~~~~~----~~~~~~~~~~~-~~~~i~~~~~~~V~~id~~~----------~~v~~~~g--- 158 (489)
.+..+. .|..... ......+..|+ ++.+..++.+++|+++.+.. .+|++.++
T Consensus 117 s~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g 196 (501)
T 4b63_A 117 SSFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETG 196 (501)
T ss_dssp CTTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTC
T ss_pred CccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCc
Confidence 000000 0000000 00000111222 34566688889999986422 35665443
Q ss_pred --eEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHH-HHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC--CCcE
Q 011267 159 --KLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADA-DALISSLEKAKKVVVVGGGYIGMEVAAAAVGW--KLDT 233 (489)
Q Consensus 159 --~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~-~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~--g~~V 233 (489)
.++.+++||+|||..|. +|...+. .+.++....+.+. +.+......+|+|+|||+|.+|+|++..|.+. +.+|
T Consensus 197 ~~~~~~ar~vVlatG~~P~-iP~~~~~-~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v 274 (501)
T 4b63_A 197 EISARRTRKVVIAIGGTAK-MPSGLPQ-DPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRT 274 (501)
T ss_dssp CEEEEEEEEEEECCCCEEC-CCTTSCC-CTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEE
T ss_pred eEEEEEeCEEEECcCCCCC-CCCCCCC-CcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceE
Confidence 36889999999998876 4543332 2234333222221 22222234689999999999999999999764 6789
Q ss_pred EEEccCCcchh--------hhhCHHHHH-------------------------------HHHHHH-Hh---------cCc
Q 011267 234 TIIFPENHLLQ--------RLFTPSLAQ-------------------------------RYEQLY-QQ---------NGV 264 (489)
Q Consensus 234 ~lv~~~~~~l~--------~~~~~~~~~-------------------------------~l~~~l-~~---------~Gv 264 (489)
+++.|++.+.+ ..+.+...+ .+.+.+ ++ ...
T Consensus 275 ~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~~~ 354 (501)
T 4b63_A 275 TLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQWQH 354 (501)
T ss_dssp EEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGCSS
T ss_pred EEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCcccccce
Confidence 99998864422 112221111 111111 10 112
Q ss_pred EEEEcCceEEEEEeCCC-CcE-----------EEEEeCCCcEEEcCEEEEccCCCCCCch--hhhc-CCeec-CCcEEeC
Q 011267 265 KFVKVGASIKNLEAGSD-GRV-----------AAVKLEDGSTIDADTIVIGIGAKPTVSP--FERV-GLNSS-VGGIQVD 328 (489)
Q Consensus 265 ~~~~~~~~v~~i~~~~~-~~v-----------~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~~~-gl~~~-~g~i~vd 328 (489)
.+.. +..+..+..... +++ .++.+.+|+++++|.||+|||++|+... +..+ .+..+ +|...|+
T Consensus 355 ~l~~-~~~v~~~~~~~~~~~~~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~v~ 433 (501)
T 4b63_A 355 RILP-ERKITRVEHHGPQSRMRIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWKPH 433 (501)
T ss_dssp EEEC-SEEEEEEECCSSSSCEEEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCCBC
T ss_pred eecC-CcceeeeeecCCCCeEEEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCeeeC
Confidence 4555 666666653322 121 1345678899999999999999988532 2221 12222 4567777
Q ss_pred CCCCC--------CCCCeEEeccc
Q 011267 329 GQFRT--------RMPGIFAIGDV 344 (489)
Q Consensus 329 ~~~~t--------~~~~Iya~GD~ 344 (489)
.+++. ..++||+-|-+
T Consensus 434 rdy~~~~~~~~~~~~~~i~~qg~~ 457 (501)
T 4b63_A 434 RDYRVEMDPSKVSSEAGIWLQGCN 457 (501)
T ss_dssp TTSBBCCCTTTBCTTCEEEECSCC
T ss_pred CCcEEeecCCccCCCceEEecCCC
Confidence 76543 24679999843
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-18 Score=177.52 Aligned_cols=222 Identities=16% Similarity=0.123 Sum_probs=130.0
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEE---EeC-CCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTL---ITN-SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE 205 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v---~~~-~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~ 205 (489)
+++.+++++.+++| ++..+...+ .+. ++.++.+|.+|+|||+.+..++...+ .++ .+...+.-+.+....+.
T Consensus 129 ~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~~~~~~~~~--~~~-~tGdgi~~a~~aGa~~~ 204 (472)
T 2e5v_A 129 AREEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATGGYSYLYEYSST--QST-NIGDGMAIAFKAGTILA 204 (472)
T ss_dssp HHHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCCCCGGGSSSBSS--CTT-CSCHHHHHHHHTTCCEE
T ss_pred HHhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCCCCcccCccccC--CCC-CchHHHHHHHHcCCCEe
Confidence 35679999999889 887655543 332 33357899999999998764332111 011 11100001111000011
Q ss_pred C------CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHH--------HHHHHHHHHHhcCcEEEEcCc
Q 011267 206 K------AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS--------LAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 206 ~------~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~--------~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
. ....+++|+| +++++..++..|..+ +..+.++++++ +++. .+..+.+.+++.|. +++ +.
T Consensus 205 d~e~~q~~p~~~~~ggg--~~~~ae~~~~~G~~~-v~~~g~rf~~~-~~~~~el~~rd~v~~~i~~~~~~~~~-v~l-d~ 278 (472)
T 2e5v_A 205 DMEFVQFHPTVTSLDGE--VFLLTETLRGEGAQI-INENGERFLFN-YDKRGELAPRDILSRAIYIEMLKGHK-VFI-DL 278 (472)
T ss_dssp CTTCEEEEEEEECGGGC--CEECCTHHHHTTCEE-EETTCCCGGGG-TCTTGGGSCHHHHHHHHHHHHHHTCC-EEE-EC
T ss_pred CCcceEEEeEEEccCCC--ceeeehhhcCCceEE-ECCCCCCCCcc-CCcccCcCchhHHHHHHHHHHHhCCc-EEE-ec
Confidence 1 1133455766 888888888888877 78888898875 3433 25566666666664 444 32
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEE-cCEEEEccCCCCCCchhhhcCCee-cCCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 272 SIKNLEAGSDGRVAAVKLEDGSTID-ADTIVIGIGAKPTVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~~g~~i~-aD~vi~a~G~~p~~~~~~~~gl~~-~~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
.. + + . +. +.++ .+.++++.|..|+ ++++..+... ..|||.||+++||++|+|||+|||+....
T Consensus 279 ~~--~---~-~------~~--~~~~~~~~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~~~~t~ipgLyAaGd~a~~~~ 343 (472)
T 2e5v_A 279 SK--I---E-D------FE--RKFPVVAKYLARHGHNYK-VKIPIFPAAHFVDGGIRVNIRGESNIVNLYAIGEVSDSGL 343 (472)
T ss_dssp TT--C---T-T------HH--HHCHHHHHHHHHTTCCTT-SCEECEEEEEEESCEEECCTTCBCSSBTEEECGGGEECSS
T ss_pred cc--h---H-H------HH--HHhHHHHHHHHHhCcCcc-cceEeehhhceeCCCeEECCCCccccCCEEecchhccccc
Confidence 10 0 0 0 00 1233 3667888999998 6554332222 35899999999999999999999997321
Q ss_pred ccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 350 KMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 350 ~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
....+.. ..+..++...|+.++.++.+
T Consensus 344 hg~~rl~-~~sl~~~~v~G~~a~~~~a~ 370 (472)
T 2e5v_A 344 HGANRLA-SNSLLEGLVFGINLPRYVDS 370 (472)
T ss_dssp STTSCCT-THHHHHHHHHHHHGGGTTTS
T ss_pred CCCCCCC-cccHHHHHHHHHHHHHHHHh
Confidence 1111111 22345667778877777653
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-14 Score=133.18 Aligned_cols=155 Identities=18% Similarity=0.239 Sum_probs=113.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-----------------cchhhhhC-------HHHHHHHHHHHHhc-
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-----------------HLLQRLFT-------PSLAQRYEQLYQQN- 262 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~-----------------~~l~~~~~-------~~~~~~l~~~l~~~- 262 (489)
.+|+|||+|+.|+++|..|++.|.+|+++++.. .++.. ++ ..+.+.+.+.+++.
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~-~~d~~g~~~~~~~~~l~~~~~~~~ 82 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLER-AYDPKDERVWAFHARAKYLLEGLR 82 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHH-HCCTTCCCHHHHHHHHHHHHHTCT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhh-hccCCCCCHHHHHHHHHHHHHcCC
Confidence 479999999999999999999999999999872 22221 22 36677888889887
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC--------------------ch---hhhcCCe
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------------------SP---FERVGLN 319 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~--------------------~~---~~~~gl~ 319 (489)
|++++. ++|+++..+ ++++..|.+.+|+++.||.||+|+|..++. ++ +.+.+++
T Consensus 83 gv~i~~--~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~ 159 (232)
T 2cul_A 83 PLHLFQ--ATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFR 159 (232)
T ss_dssp TEEEEE--CCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCC
T ss_pred CcEEEE--eEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCe
Confidence 999886 589999754 456667888899889999999999995442 22 3345554
Q ss_pred ecCCc-EE---------------eCC------C-CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 320 SSVGG-IQ---------------VDG------Q-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 320 ~~~g~-i~---------------vd~------~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
..++. +. ... . .+|++|+|||+|||+ ... .+..|..+|+.+|.+|+
T Consensus 160 ~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~~g----------~~~~~~~~g~~~a~~i~ 228 (232)
T 2cul_A 160 FVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-REG----------DYARMSEEGKRLAEHLL 228 (232)
T ss_dssp EEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-SCC----------CHHHHHHHHHHHHHHHH
T ss_pred EEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-cCc----------cHHHHHHHHHHHHHHHH
Confidence 43211 00 110 1 126899999999999 432 45568899999999987
Q ss_pred c
Q 011267 377 S 377 (489)
Q Consensus 377 ~ 377 (489)
.
T Consensus 229 ~ 229 (232)
T 2cul_A 229 H 229 (232)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-14 Score=145.26 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=72.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCcc------ccCCCCCCCCCC------
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPAR------ 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-------~~~~l~~------~~~~~~~~~~~~------ 110 (489)
+++||+|||||++|++||..|++.|. +|+|+|+.+.... .++.+.. .++.. ......
T Consensus 3 ~~~dViIIGgG~aGl~aA~~la~~G~---~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~-~~~~~~~~l~~~ 78 (401)
T 2gqf_A 3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQ-NPHFVKSALARY 78 (401)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECS-CTTSTHHHHHHS
T ss_pred CCCCEEEECCcHHHHHHHHHHHhCCC---CEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccC-CHHHHHHHHHhC
Confidence 45899999999999999999999986 7999999875311 0111110 01100 000000
Q ss_pred ----------CCCCcccc-----------CCCCCCCChhHHHHCCcEEEeCCcEEEEeCC----C--CEEEeCCCeEEee
Q 011267 111 ----------LPGFHTCV-----------GSGGERQTPEWYKEKGIEMIYQDPVTSIDIE----K--QTLITNSGKLLKY 163 (489)
Q Consensus 111 ----------~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~~~V~~id~~----~--~~v~~~~g~~i~y 163 (489)
-.+.+... .......+.+.+++.|++++.+++|+++..+ . ..|.+.++ ++.+
T Consensus 79 ~~~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g-~i~a 157 (401)
T 2gqf_A 79 TNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNST-QWQC 157 (401)
T ss_dssp CHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTE-EEEE
T ss_pred CHHHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCC-EEEC
Confidence 00000000 0000011223345679999999999998744 2 35666666 7999
Q ss_pred CcEEecCCCCCC
Q 011267 164 GSLIVATGCTAS 175 (489)
Q Consensus 164 d~lvlATG~~~~ 175 (489)
|++|+|||+.+.
T Consensus 158 d~VVlAtG~~s~ 169 (401)
T 2gqf_A 158 KNLIVATGGLSM 169 (401)
T ss_dssp SEEEECCCCSSC
T ss_pred CEEEECCCCccC
Confidence 999999999874
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-12 Score=128.33 Aligned_cols=95 Identities=17% Similarity=0.251 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC--------CCCCCchhhhc--C
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--------AKPTVSPFERV--G 317 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G--------~~p~~~~~~~~--g 317 (489)
+..+...+...+++.| ++++ ++.|++|+..++ .+ .|.+.+|+++.||.||+|+| +.|+.+..... +
T Consensus 203 ~~g~~~l~~~~~~~~g-~i~~-~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~~ 278 (431)
T 3k7m_X 203 SNGSADLVDAMSQEIP-EIRL-QTVVTGIDQSGD-VV-NVTVKDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVIE 278 (431)
T ss_dssp TTCTHHHHHHHHTTCS-CEES-SCCEEEEECSSS-SE-EEEETTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHHH
T ss_pred CCcHHHHHHHHHhhCC-ceEe-CCEEEEEEEcCC-eE-EEEECCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHHH
Confidence 3445556667777778 9999 999999986543 44 48888998899999999999 88887653322 2
Q ss_pred CeecCCcEEeCCCCCCCCCCeEEeccccc
Q 011267 318 LNSSVGGIQVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 318 l~~~~g~i~vd~~~~t~~~~Iya~GD~a~ 346 (489)
.......++|+..++|+.++||+.||+..
T Consensus 279 ~~~~~~~~kv~~~~~~~~~~i~~~~d~~~ 307 (431)
T 3k7m_X 279 EGHGGQGLKILIHVRGAEAGIECVGDGIF 307 (431)
T ss_dssp HCCCCCEEEEEEEEESCCTTEEEEBSSSS
T ss_pred hCCCcceEEEEEEECCCCcCceEcCCCCE
Confidence 21223469999999999999999999853
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=99.20 E-value=4.5e-11 Score=114.10 Aligned_cols=164 Identities=17% Similarity=0.181 Sum_probs=111.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcchhh------------------------------------h-hCH
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHLLQR------------------------------------L-FTP 249 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~l~~------------------------------------~-~~~ 249 (489)
.+|+|||+|++|+.+|..|++. |.+|+++++.+.+... . ...
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~ 119 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA 119 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence 4799999999999999999997 9999999988644210 0 123
Q ss_pred HHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeC---------CC-----cEEEcCEEEEccCCCCCCch--
Q 011267 250 SLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLE---------DG-----STIDADTIVIGIGAKPTVSP-- 312 (489)
Q Consensus 250 ~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---------~g-----~~i~aD~vi~a~G~~p~~~~-- 312 (489)
.+...+.+.+.+ .|+++++ ++.|+++..+ ++++.+|.+. +| .++.||.||+|+|..++...
T Consensus 120 ~~~~~l~~~~~~~~gv~i~~-~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~ 197 (284)
T 1rp0_A 120 LFTSTIMSKLLARPNVKLFN-AVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG 197 (284)
T ss_dssp HHHHHHHHHHHTSTTEEEEE-TEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred HHHHHHHHHHHhcCCCEEEc-CcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence 445556666655 6999999 9999999854 4556566653 32 57999999999998876431
Q ss_pred ---hhhcC----CeecCCcEEeCC-------CCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 313 ---FERVG----LNSSVGGIQVDG-------QFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 313 ---~~~~g----l~~~~g~i~vd~-------~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+...+ +... .++.+|. +.+++.|++|++||++... .+.......+..+..+|+.+|.++..
T Consensus 198 ~~~~~~~g~~~~v~~~-~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~---~g~~~~gp~~~~~~~sG~~~a~~i~~ 272 (284)
T 1rp0_A 198 VKRLKSIGMIDHVPGM-KALDMNTAEDAIVRLTREVVPGMIVTGMEVAEI---DGAPRMGPTFGAMMISGQKAGQLALK 272 (284)
T ss_dssp HHHHHHTTSSSCCCCC-EEECHHHHHHHHHHHCEEEETTEEECTHHHHHH---HTCEECCSCCHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccCCCCcCCc-CCchhhhhhHHHhhccccccCCEEEEeeehhhh---cCCCCcChHHHHHHHhHHHHHHHHHH
Confidence 22222 2111 3343332 3456789999999987521 11111122456677888888888864
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.7e-12 Score=131.35 Aligned_cols=170 Identities=14% Similarity=-0.056 Sum_probs=99.3
Q ss_pred ccccceeeeeecceec---CCCCCceeee-ccccccccccccccc-------c-----------ccCCCCCCcEEEEcCc
Q 011267 3 SVSNSLSFKHGLSLWC---PQSPSLHRIR-HSSAKNFQRRGFVVA-------Y-----------SSFANENREFVIVGGG 60 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~-------~-----------~~~~~~~~~vvIIGgG 60 (489)
..+||||..||++|+. .|...|.+.. +.+......+..... . .......+||+|||||
T Consensus 22 ~~~~~~~~~~~rvc~~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG 101 (497)
T 2bry_A 22 FETFVQAQLCQDVLSSFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAG 101 (497)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECcc
Confidence 3579999999999987 6888887743 222222222211110 1 1113457899999999
Q ss_pred hHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccc---cCCCCC----CCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 61 NAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLFPLD----KKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 61 ~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
++|+++|..|++.|. +|+|||+.+.....+. .+... .+.... ........+...........+.+.+++
T Consensus 102 ~aGl~aA~~La~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 178 (497)
T 2bry_A 102 PCGLRAAVELALLGA---RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALL 178 (497)
T ss_dssp HHHHHHHHHHHHTTC---EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHh
Confidence 999999999999986 7999999876431100 00000 000000 000000000000000000112234456
Q ss_pred CCcEEEeCCcEEEEeCC-----CCEEEe--C-CC--eEEeeCcEEecCCCCCC
Q 011267 133 KGIEMIYQDPVTSIDIE-----KQTLIT--N-SG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~-----~~~v~~--~-~g--~~i~yd~lvlATG~~~~ 175 (489)
.+++++.+++|+++..+ ...|.+ . +| .++.+|.||+|+|..+.
T Consensus 179 ~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~ 231 (497)
T 2bry_A 179 LGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFV 231 (497)
T ss_dssp TTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCC
T ss_pred CCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcc
Confidence 79999999999999863 235666 3 56 46899999999998865
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=101.23 Aligned_cols=108 Identities=18% Similarity=0.194 Sum_probs=73.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCcc-ccCCCCCCCChhH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHT-CVGSGGERQTPEW 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 129 (489)
++||+|||||++|+.+|..|++.|. +|+|||+.+........+ ..+++++. ..+........+.
T Consensus 1 ~~~vvIIGgG~~Gl~~A~~l~~~g~---~v~lie~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~~ 65 (180)
T 2ywl_A 1 MWDVIVVGGGPSGLSAALFLARAGL---KVLVLDGGRSKVKGVSRV------------PNYPGLLDEPSGEELLRRLEAH 65 (180)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTC---CEEEEECSCCTTTTCSCC------------CCSTTCTTCCCHHHHHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCcccCchhh------------hccCCCcCCCCHHHHHHHHHHH
Confidence 3689999999999999999999876 799999987432111111 01111100 0000001223445
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.+++++.+ +|++++.+. ..+.+.+| ++.+|.+|+|+|..|.
T Consensus 66 ~~~~gv~v~~~-~v~~i~~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~ 111 (180)
T 2ywl_A 66 ARRYGAEVRPG-VVKGVRDMGGVFEVETEEG-VEKAERLLLCTHKDPT 111 (180)
T ss_dssp HHHTTCEEEEC-CCCEEEECSSSEEEECSSC-EEEEEEEEECCTTCCH
T ss_pred HHHcCCEEEeC-EEEEEEEcCCEEEEEECCC-EEEECEEEECCCCCCC
Confidence 67789999998 999998644 36777788 7999999999999873
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=3.6e-10 Score=118.90 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||||+||++||..|++.|. +.+|+|||+.+
T Consensus 4 ~~~DVvIVG~G~AGl~aAl~la~~G~-~~~V~vlEk~~ 40 (602)
T 1kf6_A 4 FQADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY 40 (602)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred ccCCEEEECCCHHHHHHHHHHHhcCC-CCcEEEEeCCC
Confidence 35799999999999999999999983 34799999975
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-09 Score=110.22 Aligned_cols=159 Identities=15% Similarity=0.103 Sum_probs=91.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC-CCCCCCCCCccccCC-----------CCC------C--CC-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA-YAPYERPALTKGYLF-----------PLD------K--KP- 108 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~-~~~y~~~~l~~~~~~-----------~~~------~--~~- 108 (489)
..+||||||||+||++||..|++.|. +|+|||+.. ......+..+.+... +.. . ..
T Consensus 26 ~~yDVIVIGgG~AGl~AAlalAr~G~---kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f 102 (637)
T 2zxi_A 26 DEFDVVVIGGGHAGIEAALAAARMGA---KTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQF 102 (637)
T ss_dssp GCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---CEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccce
Confidence 35899999999999999999999986 799999874 222111111111000 000 0 00
Q ss_pred -----CCCCCCcccc-CCC---CCCCChhHHHH-CCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 109 -----ARLPGFHTCV-GSG---GERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 109 -----~~~~~~~~~~-~~~---~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
..-+...... ..+ ......+.+++ .|++++ +.+|+.+..+.. .|.+.+|.++.++.+|+|||..+.
T Consensus 103 ~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 103 KMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred eecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 0000000000 000 00011223444 489985 579999876544 367888989999999999998765
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv 236 (489)
. +..+| ...+ ...+ .|+.++.++|..|.++|.++..+
T Consensus 182 ~-~~~~G-----~~~~--------------~~Gr----~G~~~A~~la~~L~~lG~~v~~l 218 (637)
T 2zxi_A 182 G-VIYIG-----DKMI--------------PGGR----LGEPRSEGLSDFYRRFDFPLIRF 218 (637)
T ss_dssp C-EEEET-----TEEE--------------ECSB----TTBCCBCTHHHHHHHTTCCCEEE
T ss_pred C-ceecc-----ceec--------------CCCC----CCchhHHHHHHHHHhcCCceEEe
Confidence 2 22222 1111 1122 23567788999999988876554
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-09 Score=106.55 Aligned_cols=68 Identities=13% Similarity=0.269 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhc-CC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERV-GL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~-gl 318 (489)
+..+...+.+.+++.|+++++ +++|+++..++++.+ .|.+.+| .++.||.||+|+|.... .+++.+ |+
T Consensus 149 ~~~~~~~l~~~~~~~Gv~i~~-~~~v~~i~~~~~~~~-~v~~~~g~~~~~~a~~VV~A~G~~s~-~l~~~~~g~ 219 (369)
T 3dme_A 149 SHALMLAYQGDAESDGAQLVF-HTPLIAGRVRPEGGF-ELDFGGAEPMTLSCRVLINAAGLHAP-GLARRIEGI 219 (369)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-SCCEEEEEECTTSSE-EEEECTTSCEEEEEEEEEECCGGGHH-HHHHTEETS
T ss_pred HHHHHHHHHHHHHHCCCEEEC-CCEEEEEEEcCCceE-EEEECCCceeEEEeCEEEECCCcchH-HHHHHhcCC
Confidence 346778888889999999999 999999987654434 4788887 48999999999998754 566666 55
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=118.68 Aligned_cols=147 Identities=14% Similarity=0.089 Sum_probs=103.3
Q ss_pred eeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHH---------HHh--hcCCCcEEEECCCHHHHHHHHHHHhCC
Q 011267 162 KYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADAL---------ISS--LEKAKKVVVVGGGYIGMEVAAAAVGWK 230 (489)
Q Consensus 162 ~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~---------~~~--~~~~~~vvViG~G~~g~e~A~~l~~~g 230 (489)
.||++++++|+++.. +.+++..++++.......+..++ ... .....+|+|||||+.|+.+|..|++.|
T Consensus 37 ~~~~l~~~~g~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G 115 (497)
T 2bry_A 37 SFQGLCRALGVESGG-GLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLG 115 (497)
T ss_dssp HHHHHHHHHTCCTTC-HHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCC-CcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCC
Confidence 578999999998753 33333233344444444454444 111 123568999999999999999999999
Q ss_pred CcEEEEccCCcch--------hh------------------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEe
Q 011267 231 LDTTIIFPENHLL--------QR------------------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEA 278 (489)
Q Consensus 231 ~~V~lv~~~~~~l--------~~------------------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~ 278 (489)
.+|+++++.+.+. +. .-...+.+.+.+.+++.|+++++ +++|+++..
T Consensus 116 ~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~ 194 (497)
T 2bry_A 116 ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHW-GVKFTGLQP 194 (497)
T ss_dssp CEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEE-SCEEEEEEC
T ss_pred CeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEe-CCEEEEEEE
Confidence 9999999876431 00 00145667788888889999999 999999985
Q ss_pred CC-CCcEEEEEe--C-CC--cEEEcCEEEEccCCCCCC
Q 011267 279 GS-DGRVAAVKL--E-DG--STIDADTIVIGIGAKPTV 310 (489)
Q Consensus 279 ~~-~~~v~~v~~--~-~g--~~i~aD~vi~a~G~~p~~ 310 (489)
++ ++....|.+ . +| +++.+|.||.|+|..+..
T Consensus 195 ~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 195 PPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp CCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred ecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence 32 222335665 4 56 579999999999998765
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-12 Score=138.84 Aligned_cols=60 Identities=13% Similarity=0.262 Sum_probs=47.4
Q ss_pred HHhcCcEEEEcCceEEEEEeCCC-CcEEEEEeC---CCc--EEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 259 YQQNGVKFVKVGASIKNLEAGSD-GRVAAVKLE---DGS--TIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 259 l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
+++.||++++ ++.|+++..+++ +++.+|++. +|+ ++.||.||+|+|..|+..+|..+|+-
T Consensus 270 ~~~~nv~v~~-~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~~sgiG 335 (623)
T 3pl8_A 270 APEERFNLFP-AVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFG 335 (623)
T ss_dssp EEEEEEEEEC-SEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHHTTTSS
T ss_pred ccCCCEEEEe-CCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHHhcCCC
Confidence 3445899999 999999986543 377778775 354 68899999999999998888877663
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=113.14 Aligned_cols=57 Identities=25% Similarity=0.365 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
..+.+.+.+.+++.|++|++ ++.|++|..+ ++++++|++++|+++.||.||++++..
T Consensus 221 ~~l~~aL~~~~~~~Gg~I~~-~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 221 GALVQGMIKLFQDLGGEVVL-NARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HHHHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred cchHHHHHHHHHHhCCceee-ecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence 46778888999999999999 9999999854 678889999999999999999988754
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.1e-08 Score=107.36 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~~p~ 309 (489)
...+...+.+.+++.||++++ ++.|+++..++++++.+|.+. +|+ ++.||.||+|+|..++
T Consensus 254 g~~l~~~L~~~~~~~gv~i~~-~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~ 318 (572)
T 1d4d_A 254 GAHVAQVLWDNAVKRGTDIRL-NSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK 318 (572)
T ss_dssp HHHHHHHHHHHHHHTTCEEES-SEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred HHHHHHHHHHHHHHcCCeEEe-cCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence 446777888889999999999 999999975533777777765 564 6899999999997664
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3.3e-09 Score=107.88 Aligned_cols=66 Identities=23% Similarity=0.393 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeC--------------CCCcEEEEEeCCCcEE--EcCEEEEccCCCCCCch
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAG--------------SDGRVAAVKLEDGSTI--DADTIVIGIGAKPTVSP 312 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~--------------~~~~v~~v~~~~g~~i--~aD~vi~a~G~~p~~~~ 312 (489)
..+...+.+.+++.|++++. +++|+++..+ +++++..|.+.+| ++ .||.||+|+|.... .+
T Consensus 181 ~~l~~~L~~~~~~~Gv~i~~-~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG~~s~-~l 257 (448)
T 3axb_A 181 EKVVDYYYRRASGAGVEFIF-GRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAGVWSN-RL 257 (448)
T ss_dssp HHHHHHHHHHHHHTTCEEEE-SCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCGGGHH-HH
T ss_pred HHHHHHHHHHHHhCCCEEEc-CCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCCcCHH-HH
Confidence 37788888899999999999 9999999851 3455667888888 68 99999999998653 45
Q ss_pred hhhcC
Q 011267 313 FERVG 317 (489)
Q Consensus 313 ~~~~g 317 (489)
+..+|
T Consensus 258 ~~~~g 262 (448)
T 3axb_A 258 LNPLG 262 (448)
T ss_dssp HGGGT
T ss_pred HHHcC
Confidence 55544
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.6e-09 Score=97.60 Aligned_cols=117 Identities=15% Similarity=0.160 Sum_probs=70.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCC-CCccccCC---CCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLP-GFHTCVGS---GGERQ 125 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~ 125 (489)
+.+||+|||||++|+.+|..|++.|. +|+|||+...... .+ ... .+.... ...+. .+....+. .....
T Consensus 2 ~~~dVvVVGgG~aGl~aA~~la~~g~---~v~lie~~~~~~G-~~-~~~-~~~~~~--~~~~~~~~~d~~g~~~~~~~~~ 73 (232)
T 2cul_A 2 AAYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVM-MP-FLP-PKPPFP--PGSLLERAYDPKDERVWAFHAR 73 (232)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTT-CC-SSC-CCSCCC--TTCHHHHHCCTTCCCHHHHHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCCcCC-cc-cCc-cccccc--hhhHHhhhccCCCCCHHHHHHH
Confidence 46899999999999999999999976 7999999732111 00 000 000000 00000 00000000 00011
Q ss_pred ChhHHHHC-CcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 126 TPEWYKEK-GIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 126 ~~~~~~~~-~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
..+.+++. +++++. ++|++++.+.. .+.+.+|.++.+|.+|+|||....
T Consensus 74 l~~~~~~~~gv~i~~-~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~ 126 (232)
T 2cul_A 74 AKYLLEGLRPLHLFQ-ATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG 126 (232)
T ss_dssp HHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred HHHHHHcCCCcEEEE-eEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChh
Confidence 22344555 899885 69999876543 466788888999999999998654
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-09 Score=109.61 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=90.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCccccCCCCC--CCCCCCCC------------C
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYLFPLD--KKPARLPG------------F 114 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~-~~y~~~~l~~~~~~~~~--~~~~~~~~------------~ 114 (489)
..+||||||||+||++||..|++.|. +|+|||+.+. .....+..+.+.+.... .....+.+ +
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f 103 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAARMGQ---QTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQF 103 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEE
T ss_pred CcCCEEEECChHHHHHHHHHHHhCCC---CEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccch
Confidence 46899999999999999999999986 6999998742 21111111111000000 00000000 0
Q ss_pred cc---ccCCC------------CCCCChhHHHH-CCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 115 HT---CVGSG------------GERQTPEWYKE-KGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 115 ~~---~~~~~------------~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.. ..+.. ......+.+++ .|++++ +.+|+.+..+.. .|.+.+|.++.+|.+|+|||+.+.
T Consensus 104 ~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 104 RILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp EEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred hhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 00 00000 00011223444 589985 569999976544 467788888999999999998765
Q ss_pred CCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEc
Q 011267 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237 (489)
Q Consensus 176 ~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~ 237 (489)
. +. .+|.... .+.+ +| |.+++++|..|.++|.+|+.+.
T Consensus 183 ~-~~-----i~G~~~~--------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~ 220 (651)
T 3ces_A 183 G-KI-----HIGLDNY--------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLK 220 (651)
T ss_dssp C-EE-----ECC-------------------------------CCHHHHHHHTTTCCEEEEC
T ss_pred C-cc-----ccCcccC--------------CCCC---cc-chhhhHHHHHHHhcCCeEEEec
Confidence 3 22 2222111 1222 46 7889999999999999988774
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=8.3e-08 Score=102.89 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc-EEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-TIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~-~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+..+...+.+.+++.|+++++ +++|+++..++++ + .|.+.+|+ ++.||.||+|+|.... .++...++
T Consensus 411 p~~l~~aL~~~a~~~Gv~i~~-~t~V~~l~~~~~~-v-~V~t~~G~~~i~Ad~VVlAtG~~s~-~l~~~~~l 478 (689)
T 3pvc_A 411 PSDLTHALMMLAQQNGMTCHY-QHELQRLKRIDSQ-W-QLTFGQSQAAKHHATVILATGHRLP-EWEQTHHL 478 (689)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-SCCEEEEEECSSS-E-EEEEC-CCCCEEESEEEECCGGGTT-CSTTTTTS
T ss_pred HHHHHHHHHHHHHhCCCEEEe-CCeEeEEEEeCCe-E-EEEeCCCcEEEECCEEEECCCcchh-ccccccCC
Confidence 356777888888999999999 9999999865444 3 68888887 8999999999998754 44444444
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-09 Score=108.04 Aligned_cols=124 Identities=20% Similarity=0.264 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCC-------CCCCcc------ccCCCCCCCC-----
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYE-------RPALTK------GYLFPLDKKP----- 108 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~-------~~~l~~------~~~~~~~~~~----- 108 (489)
|.++++||+|||||+||++||..|++.|. +|+|+|+.+..... ++.+.. .++.......
T Consensus 23 M~~~~~dViIIGgG~AGl~aA~~La~~G~---~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~ 99 (417)
T 3v76_A 23 MVAEKQDVVIIGAGAAGMMCAIEAGKRGR---RVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALA 99 (417)
T ss_dssp -----CCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHH
T ss_pred ccCCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHH
Confidence 44567899999999999999999999986 79999998754210 010000 0000000000
Q ss_pred -------------------CCCCCCccccC--CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCc
Q 011267 109 -------------------ARLPGFHTCVG--SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGS 165 (489)
Q Consensus 109 -------------------~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~ 165 (489)
..-.+...... ......+.+.+++.+++++.+++|+++..+.. .|.+.+| ++.+|+
T Consensus 100 ~~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g-~i~ad~ 178 (417)
T 3v76_A 100 RYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG-TVDAAS 178 (417)
T ss_dssp HSCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE-EEEESE
T ss_pred hcCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc-EEEeeE
Confidence 00000000000 00001112334567999999999999976543 5667777 799999
Q ss_pred EEecCCCCC
Q 011267 166 LIVATGCTA 174 (489)
Q Consensus 166 lvlATG~~~ 174 (489)
||+|||..+
T Consensus 179 VIlAtG~~S 187 (417)
T 3v76_A 179 LVVASGGKS 187 (417)
T ss_dssp EEECCCCSS
T ss_pred EEECCCCcc
Confidence 999999876
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=98.83 E-value=1.4e-08 Score=106.02 Aligned_cols=59 Identities=20% Similarity=0.377 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+.+.+.+.+++. |+++++ + +|+++..++++.+..|.+.+|+++.||.||.|+|....
T Consensus 194 ~~l~~~L~~~~~~~~Gv~i~~-~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~ 253 (550)
T 2e4g_A 194 HLVADFLRRFATEKLGVRHVE-D-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGL 253 (550)
T ss_dssp HHHHHHHHHHHHHHSCCEEEE-C-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHHHHhcCCcEEEE-C-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchh
Confidence 35677888888888 999999 8 99999876667777889999988999999999998765
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-08 Score=105.39 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||+||++||.+|++ |. +|+|||+.+.
T Consensus 7 ~~~DVvVVG~G~AGl~aAl~la~-G~---~V~vlEk~~~ 41 (540)
T 1chu_A 7 HSCDVLIIGSGAAGLSLALRLAD-QH---QVIVLSKGPV 41 (540)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT-TS---CEEEECSSCT
T ss_pred CCCCEEEECccHHHHHHHHHHhc-CC---cEEEEECCCC
Confidence 46899999999999999999999 86 6999999864
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-07 Score=101.31 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+..+...+.+.+++.|+++++ +++|+++..+++ .+ .|.+.+|+++.||.||+|+|.... .++...++
T Consensus 416 p~~l~~aL~~~a~~~Gv~i~~-~t~V~~l~~~~~-~v-~V~t~~G~~i~Ad~VVlAtG~~s~-~l~~~~~l 482 (676)
T 3ps9_A 416 PAELTRNVLELAQQQGLQIYY-QYQLQNFSRKDD-CW-LLNFAGDQQATHSVVVLANGHQIS-RFSQTSTL 482 (676)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-SCCEEEEEEETT-EE-EEEETTSCEEEESEEEECCGGGGG-CSTTTTTC
T ss_pred HHHHHHHHHHHHHhCCCEEEe-CCeeeEEEEeCC-eE-EEEECCCCEEECCEEEECCCcchh-ccccccCC
Confidence 356777888888999999999 999999986543 44 688888888999999999998753 34433333
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-08 Score=102.96 Aligned_cols=112 Identities=15% Similarity=0.288 Sum_probs=89.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------------------------------- 245 (489)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~ 186 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP 186 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence 468999999999999999999999999999987533000
Q ss_pred ------------------------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEE
Q 011267 246 ------------------------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTI 295 (489)
Q Consensus 246 ------------------------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i 295 (489)
.....+.+.+.+.+++.|+++++ +++|+++..+ ++.+..|.+.+|+++
T Consensus 187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~-~t~V~~I~~~-~~~v~gV~l~~G~~i 264 (549)
T 3nlc_A 187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRF-STRVDDLHME-DGQITGVTLSNGEEI 264 (549)
T ss_dssp TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEES-SCCEEEEEES-SSBEEEEEETTSCEE
T ss_pred cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEe-CCEEEEEEEe-CCEEEEEEECCCCEE
Confidence 00145666778888889999999 9999999854 566778999999999
Q ss_pred EcCEEEEccCCCCCC--chhhhcCCee
Q 011267 296 DADTIVIGIGAKPTV--SPFERVGLNS 320 (489)
Q Consensus 296 ~aD~vi~a~G~~p~~--~~~~~~gl~~ 320 (489)
.||.||+|+|..+.. .++...|+..
T Consensus 265 ~Ad~VVlA~G~~s~~~~~~l~~~Gi~~ 291 (549)
T 3nlc_A 265 KSRHVVLAVGHSARDTFEMLHERGVYM 291 (549)
T ss_dssp ECSCEEECCCTTCHHHHHHHHHTTCCC
T ss_pred ECCEEEECCCCChhhHHHHHHHcCCCc
Confidence 999999999998853 2455556543
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1e-08 Score=101.90 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC---------------ccccCCCCCCCCCCCC-
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL---------------TKGYLFPLDKKPARLP- 112 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l---------------~~~~~~~~~~~~~~~~- 112 (489)
|+.+||+|||||++|+++|..|++.|. +|+|+|+.+......... ...+.. .......+.
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~~G~---~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~-~~~~~~~~~~ 84 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQNGW---DVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQ-GSHTPPTYET 84 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHT-TCBCCSCEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC---CEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHh-hCCCccceEE
Confidence 456899999999999999999999986 799999986542110000 000000 000000000
Q ss_pred ---CCc--ccc--CC--------CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 113 ---GFH--TCV--GS--------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 113 ---~~~--~~~--~~--------~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+.. ... +. .....+.+.+.+.|++++.+++|++++.+. .|++.+|.++.+|.||.|+|..+.
T Consensus 85 ~~~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~-~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 85 WMHNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVG-RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EETTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTT-EEEETTSCEEECSEEEECCCTTCH
T ss_pred EeCCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCC-EEEECCCCEEEcCEEEECCCccHH
Confidence 000 000 00 000111233456799999999999998855 888889989999999999998753
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=7.1e-08 Score=96.43 Aligned_cols=66 Identities=18% Similarity=0.306 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
..+...+.+.+++.|++++. +++|+++..+ ++.+..|.+.+| ++.+|.||+|+|.... .+++.+++
T Consensus 174 ~~~~~~l~~~~~~~g~~i~~-~~~v~~i~~~-~~~~~~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~~g~ 239 (405)
T 2gag_B 174 DHVAWAFARKANEMGVDIIQ-NCEVTGFIKD-GEKVTGVKTTRG-TIHAGKVALAGAGHSS-VLAEMAGF 239 (405)
T ss_dssp HHHHHHHHHHHHHTTCEEEC-SCCEEEEEES-SSBEEEEEETTC-CEEEEEEEECCGGGHH-HHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCEEEc-CCeEEEEEEe-CCEEEEEEeCCc-eEECCEEEECCchhHH-HHHHHcCC
Confidence 36777888889999999999 9999999864 456667888888 7999999999998754 34444443
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=1e-08 Score=106.45 Aligned_cols=50 Identities=12% Similarity=0.139 Sum_probs=38.7
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.....++.|+++++ ++.|++|... ++.+ .|.+.+|+++.||.||++++..
T Consensus 218 ~~~l~~~lg~~i~~-~~~V~~i~~~-~~~v-~v~~~~g~~~~ad~VI~a~p~~ 267 (520)
T 1s3e_A 218 SERIMDLLGDRVKL-ERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPT 267 (520)
T ss_dssp HHHHHHHHGGGEES-SCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGG
T ss_pred HHHHHHHcCCcEEc-CCeeEEEEEC-CCeE-EEEECCCeEEEeCEEEECCCHH
Confidence 33344445889999 9999999854 3445 3888899999999999999864
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.71 E-value=3.3e-08 Score=102.18 Aligned_cols=123 Identities=16% Similarity=0.211 Sum_probs=75.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC--------------CC---CCCCc-cc-cCCCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP--------------YE---RPALT-KG-YLFPLDKKPAR 110 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~--------------y~---~~~l~-~~-~~~~~~~~~~~ 110 (489)
..+||||||||++|++||+.|++.|+ +|+|||+.+... +. ..... .+ ..+...+....
T Consensus 106 ~~~DVVIVGgGpaGL~aA~~La~~G~---kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~ 182 (549)
T 3nlc_A 106 LTERPIVIGFGPCGLFAGLVLAQMGF---NPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQ 182 (549)
T ss_dssp CCCCCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEE
Confidence 45899999999999999999999987 699999985420 00 00000 00 00000000000
Q ss_pred CCC--C--------------cc-cc--CC---------CCCCCChhHHHHCCcEEEeCCcEEEEeCCCC---EEEeCCCe
Q 011267 111 LPG--F--------------HT-CV--GS---------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGK 159 (489)
Q Consensus 111 ~~~--~--------------~~-~~--~~---------~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~---~v~~~~g~ 159 (489)
+.. + +. .. .. .....+.+.+++.|++++.+++|+++..+.. .|.+.+|+
T Consensus 183 i~~~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~ 262 (549)
T 3nlc_A 183 VKDPNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGE 262 (549)
T ss_dssp SCCTTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSC
T ss_pred eccccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCC
Confidence 000 0 00 00 00 0000112334567999999999999987654 47788999
Q ss_pred EEeeCcEEecCCCCCC
Q 011267 160 LLKYGSLIVATGCTAS 175 (489)
Q Consensus 160 ~i~yd~lvlATG~~~~ 175 (489)
++.+|.||+|+|..+.
T Consensus 263 ~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 263 EIKSRHVVLAVGHSAR 278 (549)
T ss_dssp EEECSCEEECCCTTCH
T ss_pred EEECCEEEECCCCChh
Confidence 9999999999999873
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.4e-08 Score=103.21 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCcc-----ccC--CCCCCCCC-----
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK-----GYL--FPLDKKPA----- 109 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-------~~~~l~~-----~~~--~~~~~~~~----- 109 (489)
.+.+||+|||||+||++||..|++.|. +|+|||+.+.... .+..+.. .++ ........
T Consensus 24 ~~~~dVvIIGgG~aGl~aA~~la~~G~---~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (447)
T 2i0z_A 24 AMHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS 100 (447)
T ss_dssp -CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred cCCCCEEEECCcHHHHHHHHHHHHCCC---CEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence 346899999999999999999999876 7999999764320 0010000 000 00000000
Q ss_pred CC-----------CCCccc---cC---------CCCCCCChhHHHHCCcEEEeCCcEEEEeCCCC---EEEeCCCeEEee
Q 011267 110 RL-----------PGFHTC---VG---------SGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKY 163 (489)
Q Consensus 110 ~~-----------~~~~~~---~~---------~~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~y 163 (489)
.+ .+.... .+ ......+.+.+++.|++++.+++|+++..+.. .|.+.+|.++.+
T Consensus 101 ~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A 180 (447)
T 2i0z_A 101 IFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET 180 (447)
T ss_dssp HSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred hcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence 00 000000 00 00001112334567999999999999975443 477788877999
Q ss_pred CcEEecCCCCC
Q 011267 164 GSLIVATGCTA 174 (489)
Q Consensus 164 d~lvlATG~~~ 174 (489)
|.||+|||..+
T Consensus 181 d~VVlAtGg~s 191 (447)
T 2i0z_A 181 NHVVIAVGGKS 191 (447)
T ss_dssp SCEEECCCCSS
T ss_pred CEEEECCCCCc
Confidence 99999999876
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.1e-07 Score=94.14 Aligned_cols=60 Identities=23% Similarity=0.266 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCc---eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGA---SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~---~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+..+...+.+.+++.|+++++ ++ .|+++..+ ++.+.+|++.+|+++.||.||+|+|....
T Consensus 160 ~~~~~~~L~~~a~~~Gv~i~~-~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~ 222 (438)
T 3dje_A 160 ARNALVAAAREAQRMGVKFVT-GTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASAG 222 (438)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-STTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHhcCCEEEe-CCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCChh
Confidence 346777888889999999999 99 99999854 56777799999988999999999998653
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=92.39 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
+..+...+.+.+++.|++++. +++|+++..+ ++.+.+|.+.+| ++.||.||+|+|.... .+++.++
T Consensus 148 ~~~l~~~l~~~~~~~Gv~i~~-~~~v~~i~~~-~~~v~gv~~~~g-~i~a~~VV~A~G~~s~-~l~~~~g 213 (382)
T 1y56_B 148 PFEATTAFAVKAKEYGAKLLE-YTEVKGFLIE-NNEIKGVKTNKG-IIKTGIVVNATNAWAN-LINAMAG 213 (382)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-SCCEEEEEES-SSBEEEEEETTE-EEECSEEEECCGGGHH-HHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCEEEC-CceEEEEEEE-CCEEEEEEECCc-EEECCEEEECcchhHH-HHHHHcC
Confidence 346777788888999999999 9999999864 456666888877 7999999999998754 3444444
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=98.66 E-value=2e-07 Score=91.23 Aligned_cols=97 Identities=16% Similarity=0.159 Sum_probs=78.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh---------------------h-h---------CHHHHHHHH
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------L-F---------TPSLAQRYE 256 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~---------------------~-~---------~~~~~~~l~ 256 (489)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+... . + ...+.+.+.
T Consensus 4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (357)
T 4a9w_A 4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA 83 (357)
T ss_dssp EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence 47999999999999999999999999999988643110 0 0 057788888
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+.+++.|+++++ +++|+++...+ +....|.+.+| ++.+|.||+|+|..
T Consensus 84 ~~~~~~~~~~~~-~~~v~~i~~~~-~~~~~v~~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 84 QYEQKYALPVLR-PIRVQRVSHFG-ERLRVVARDGR-QWLARAVISATGTW 131 (357)
T ss_dssp HHHHHTTCCEEC-SCCEEEEEEET-TEEEEEETTSC-EEEEEEEEECCCSG
T ss_pred HHHHHcCCEEEc-CCEEEEEEECC-CcEEEEEeCCC-EEEeCEEEECCCCC
Confidence 999999999999 99999998653 33322777777 89999999999963
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=7.6e-09 Score=102.59 Aligned_cols=66 Identities=18% Similarity=0.150 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+..+...+.+.+++.|+++++ ++.|+++..+++ . ..|++.+| ++.||.||+|+|.... .++..+++
T Consensus 153 ~~~~~~~l~~~a~~~Gv~i~~-~~~V~~i~~~~~-~-~~V~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g~ 218 (381)
T 3nyc_A 153 TDALHQGYLRGIRRNQGQVLC-NHEALEIRRVDG-A-WEVRCDAG-SYRAAVLVNAAGAWCD-AIAGLAGV 218 (381)
T ss_dssp HHHHHHHHHHHHHHTTCEEES-SCCCCEEEEETT-E-EEEECSSE-EEEESEEEECCGGGHH-HHHHHHTC
T ss_pred HHHHHHHHHHHHHHCCCEEEc-CCEEEEEEEeCC-e-EEEEeCCC-EEEcCEEEECCChhHH-HHHHHhCC
Confidence 346777888889999999999 999999986543 3 46888877 8999999999998653 44554443
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=2.7e-07 Score=91.67 Aligned_cols=79 Identities=18% Similarity=0.400 Sum_probs=58.4
Q ss_pred CcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 231 LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 231 ~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
....++.+....+. +..+...+.+.+++.|++++. ++.|++++..+++ + .|.+.+| ++.||.||+|+|...+
T Consensus 135 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~Gv~i~~-~~~v~~i~~~~~~-~-~v~~~~g-~~~a~~vV~A~G~~~~- 206 (389)
T 2gf3_A 135 NYNAIFEPNSGVLF---SENCIRAYRELAEARGAKVLT-HTRVEDFDISPDS-V-KIETANG-SYTADKLIVSMGAWNS- 206 (389)
T ss_dssp TEEEEEETTCEEEE---HHHHHHHHHHHHHHTTCEEEC-SCCEEEEEECSSC-E-EEEETTE-EEEEEEEEECCGGGHH-
T ss_pred CceEEEeCCCcEEe---HHHHHHHHHHHHHHCCCEEEc-CcEEEEEEecCCe-E-EEEeCCC-EEEeCEEEEecCccHH-
Confidence 34566666554443 357778888899999999999 9999999865443 3 4667666 7999999999998764
Q ss_pred chhhhcC
Q 011267 311 SPFERVG 317 (489)
Q Consensus 311 ~~~~~~g 317 (489)
.++..++
T Consensus 207 ~l~~~~g 213 (389)
T 2gf3_A 207 KLLSKLN 213 (389)
T ss_dssp HHGGGGT
T ss_pred HHhhhhc
Confidence 4555544
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.8e-07 Score=93.87 Aligned_cols=100 Identities=22% Similarity=0.283 Sum_probs=79.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh---------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------------------------------- 246 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~--------------------------------------- 246 (489)
...+|+|||||..|+.+|..|++.|.+|+++++.+.+....
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 105 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQD 105 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHH
Confidence 35689999999999999999999999999999876431100
Q ss_pred ------------------------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 247 ------------------------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 247 ------------------------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
....+.+.+.+.+++.|+++++ +++|+++..+++ . ..|.+.+| ++.||.||+
T Consensus 106 ~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~-~~~V~~i~~~~~-~-~~V~~~~g-~i~ad~VIl 181 (417)
T 3v76_A 106 FVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRL-ETSIGEVERTAS-G-FRVTTSAG-TVDAASLVV 181 (417)
T ss_dssp HHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEEC-SCCEEEEEEETT-E-EEEEETTE-EEEESEEEE
T ss_pred HHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEE-CCEEEEEEEeCC-E-EEEEECCc-EEEeeEEEE
Confidence 0125666778888889999999 999999986543 3 46788888 899999999
Q ss_pred ccCCCCC
Q 011267 303 GIGAKPT 309 (489)
Q Consensus 303 a~G~~p~ 309 (489)
|+|..+.
T Consensus 182 AtG~~S~ 188 (417)
T 3v76_A 182 ASGGKSI 188 (417)
T ss_dssp CCCCSSC
T ss_pred CCCCccC
Confidence 9999863
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.8e-07 Score=90.61 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=81.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh------------------hCHHHHHHHHHHHHhcCcEEEEc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------FTPSLAQRYEQLYQQNGVKFVKV 269 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~------------------~~~~~~~~l~~~l~~~Gv~~~~~ 269 (489)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.... ...++...+.+.+++.|+++++
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 86 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICL- 86 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEEC-
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEc-
Confidence 579999999999999999999999999999976432110 1357778888888889999999
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC---CCCC
Q 011267 270 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA---KPTV 310 (489)
Q Consensus 270 ~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~---~p~~ 310 (489)
+++|+++...+++. ..|.+.+|+ +.+|.||+|+|. .|..
T Consensus 87 ~~~v~~i~~~~~~~-~~v~~~~g~-~~~d~vVlAtG~~~~~p~~ 128 (332)
T 3lzw_A 87 EQAVESVEKQADGV-FKLVTNEET-HYSKTVIITAGNGAFKPRK 128 (332)
T ss_dssp SCCEEEEEECTTSC-EEEEESSEE-EEEEEEEECCTTSCCEECC
T ss_pred cCEEEEEEECCCCc-EEEEECCCE-EEeCEEEECCCCCcCCCCC
Confidence 99999998654423 357888885 999999999999 6653
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.4e-07 Score=94.20 Aligned_cols=124 Identities=12% Similarity=0.078 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-C--Cccc---cC--CCC--CCCCCCCCCCccc-
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-A--LTKG---YL--FPL--DKKPARLPGFHTC- 117 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~--l~~~---~~--~~~--~~~~~~~~~~~~~- 117 (489)
++++||+|||||++|+++|..|++.|. +|+|+|+.+.....+. . +... .+ ... .............
T Consensus 3 ~~~~~V~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 79 (397)
T 2vou_A 3 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD 79 (397)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEe
Confidence 456899999999999999999999987 7999999865311100 0 0000 00 000 0000000000000
Q ss_pred --cCC-------CCC----CCChhHHHH--CCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 118 --VGS-------GGE----RQTPEWYKE--KGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 118 --~~~-------~~~----~~~~~~~~~--~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+. ... ..+.+.+.+ .+++++.+++|++++.+. -++++.+|.++.+|.||.|+|....
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 80 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCH
T ss_pred cCCCCccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchh
Confidence 000 000 011122222 378999999999997654 3677888989999999999998653
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.59 E-value=4.1e-08 Score=98.14 Aligned_cols=123 Identities=14% Similarity=0.173 Sum_probs=72.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCC--cc---------c----c------------CC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL--TK---------G----Y------------LF 102 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l--~~---------~----~------------~~ 102 (489)
+++||+|||||++|+++|..|++.|. +|+|+|+.+......... .. + + ..
T Consensus 5 ~~~dVvIVGaG~aGl~~A~~L~~~G~---~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 81 (399)
T 2x3n_A 5 NHIDVLINGCGIGGAMLAYLLGRQGH---RVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVY 81 (399)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC---cEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEe
Confidence 45799999999999999999999987 699999986531110000 00 0 0 00
Q ss_pred CCCCCCCCCC--CC--ccccCCCCCCCCh----hHHHHC-CcEEEeCCcEEEEeCCCC----EEEeCCCeEEeeCcEEec
Q 011267 103 PLDKKPARLP--GF--HTCVGSGGERQTP----EWYKEK-GIEMIYQDPVTSIDIEKQ----TLITNSGKLLKYGSLIVA 169 (489)
Q Consensus 103 ~~~~~~~~~~--~~--~~~~~~~~~~~~~----~~~~~~-~i~~~~~~~V~~id~~~~----~v~~~~g~~i~yd~lvlA 169 (489)
........++ .. ......-....+. +.+.+. +++++.+++|++++.+.. .+++.+|+++.+|.||.|
T Consensus 82 ~~g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~A 161 (399)
T 2x3n_A 82 HDGELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGA 161 (399)
T ss_dssp ETTEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEEC
T ss_pred CCCCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEEC
Confidence 0000000000 00 0000000000111 122334 899999999999986543 677888988999999999
Q ss_pred CCCCCC
Q 011267 170 TGCTAS 175 (489)
Q Consensus 170 TG~~~~ 175 (489)
+|....
T Consensus 162 dG~~s~ 167 (399)
T 2x3n_A 162 DGIASY 167 (399)
T ss_dssp CCTTCH
T ss_pred CCCChH
Confidence 998653
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=7.1e-07 Score=92.79 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=83.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------------------------------------hhCHH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LFTPS 250 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------~~~~~ 250 (489)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... ...++
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~e 100 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPE 100 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHH
T ss_pred CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHH
Confidence 357999999999999999999999999999986532100 01246
Q ss_pred HHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC--CCCCCc
Q 011267 251 LAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTVS 311 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G--~~p~~~ 311 (489)
+.+.+.+..++.|+ ++++ +++|+++..++++....|.+.+|+++.||.||+|+| .+|..+
T Consensus 101 i~~yl~~~~~~~g~~~~i~~-~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p 164 (549)
T 4ap3_A 101 ILAYLEHVADRFDLRRDIRF-DTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTP 164 (549)
T ss_dssp HHHHHHHHHHHTTCGGGEEC-SCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCC
T ss_pred HHHHHHHHHHHcCCCccEEE-CCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCC
Confidence 77788888888998 7899 999999987666555678899999999999999999 556543
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.58 E-value=8.8e-08 Score=96.49 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
...+.+.+.+.+++.|+++++ ++.|++|..+ ++++ | ..+|+++.||.||+|+|....
T Consensus 188 ~~~l~~~l~~~~~~~G~~i~~-~~~V~~i~~~-~~~v--V-~~~g~~~~ad~Vv~a~~~~~~ 244 (421)
T 3nrn_A 188 CKAVIDELERIIMENKGKILT-RKEVVEINIE-EKKV--Y-TRDNEEYSFDVAISNVGVRET 244 (421)
T ss_dssp HHHHHHHHHHHHHTTTCEEES-SCCEEEEETT-TTEE--E-ETTCCEEECSEEEECSCHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEc-CCeEEEEEEE-CCEE--E-EeCCcEEEeCEEEECCCHHHH
Confidence 357788889999999999999 9999999853 4454 4 567889999999999997543
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=3.6e-07 Score=91.25 Aligned_cols=124 Identities=14% Similarity=0.176 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC----Cc----cccC-------------CCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA----LT----KGYL-------------FPLDKK 107 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~----l~----~~~~-------------~~~~~~ 107 (489)
++.+||+|||||++|+++|..|++.|. +|+|+|+.+........ +. ...+ .+....
T Consensus 24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~ 100 (398)
T 2xdo_A 24 LSDKNVAIIGGGPVGLTMAKLLQQNGI---DVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVN 100 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHTTTC---EEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEE
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceE
Confidence 456899999999999999999999986 79999998653221000 00 0000 000000
Q ss_pred CCCCCCC-------ccccCCCCCC----CChhHHHHC--CcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCC
Q 011267 108 PARLPGF-------HTCVGSGGER----QTPEWYKEK--GIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGC 172 (489)
Q Consensus 108 ~~~~~~~-------~~~~~~~~~~----~~~~~~~~~--~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~ 172 (489)
.....+. +......... .+.+.+.+. +.+++.+++|++++.+.. ++++.+|.++.+|.||.|+|.
T Consensus 101 ~~~~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~ 180 (398)
T 2xdo_A 101 IADEKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGG 180 (398)
T ss_dssp EECSSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCT
T ss_pred EECCCCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCc
Confidence 0000000 0000000000 011222221 357888999999986543 677888988999999999998
Q ss_pred CCC
Q 011267 173 TAS 175 (489)
Q Consensus 173 ~~~ 175 (489)
...
T Consensus 181 ~S~ 183 (398)
T 2xdo_A 181 MSK 183 (398)
T ss_dssp TCS
T ss_pred chh
Confidence 764
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.1e-07 Score=99.47 Aligned_cols=122 Identities=16% Similarity=0.146 Sum_probs=70.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCccccCCCCCCCCCC-CCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGYLFPLDKKPAR-LPG 113 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---------------~l~~~~~~~~~~~~~~-~~~ 113 (489)
+.+||+|||||++|+++|..|++.|. +|+|||+.+....... .+...+.......... +.+
T Consensus 48 ~~~DVvIVGaG~aGL~~A~~La~~G~---~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~ 124 (570)
T 3fmw_A 48 LTTDVVVVGGGPVGLMLAGELRAGGV---GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG 124 (570)
T ss_dssp ---CEEEECCSHHHHHHHHHHHHTTC---CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC
Confidence 46899999999999999999999987 6999999765421100 0000000000000000 000
Q ss_pred -----Cc--cccCCC--CCCC--------ChhHHHHCCcEEEeCCcEEEEeCCCC--EEEe--CCC-eEEeeCcEEecCC
Q 011267 114 -----FH--TCVGSG--GERQ--------TPEWYKEKGIEMIYQDPVTSIDIEKQ--TLIT--NSG-KLLKYGSLIVATG 171 (489)
Q Consensus 114 -----~~--~~~~~~--~~~~--------~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~--~~g-~~i~yd~lvlATG 171 (489)
+. ...... .... +.+.+.+.+++++.+++|+.++.+.. ++++ .+| .++.+|.||.|+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG 204 (570)
T 3fmw_A 125 IFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDG 204 (570)
T ss_dssp BCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSC
T ss_pred cccccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCC
Confidence 00 000000 0000 11233456999999999999977654 4555 678 6899999999999
Q ss_pred CCC
Q 011267 172 CTA 174 (489)
Q Consensus 172 ~~~ 174 (489)
...
T Consensus 205 ~~S 207 (570)
T 3fmw_A 205 GRS 207 (570)
T ss_dssp SSC
T ss_pred CCc
Confidence 864
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.1e-08 Score=98.09 Aligned_cols=122 Identities=19% Similarity=0.212 Sum_probs=71.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCccc---cCC--C-------C------------
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTKG---YLF--P-------L------------ 104 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~~---~~~--~-------~------------ 104 (489)
+.+||+|||||++|+++|..|++.|. +|+|+|+.+...+..- .+... ++. . .
T Consensus 4 ~~~dVvIIGgG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 80 (421)
T 3nix_A 4 EKVDVLVIGAGPAGTVAASLVNKSGF---KVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVR 80 (421)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEE
T ss_pred ccCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEe
Confidence 45899999999999999999999987 7999999864321110 00000 000 0 0
Q ss_pred CCC--CCCCCCCccc-cCCCC---CCC----ChhHHHHCCcEEEeCCcEEEEeCCCC----EEEeCCCe--EEeeCcEEe
Q 011267 105 DKK--PARLPGFHTC-VGSGG---ERQ----TPEWYKEKGIEMIYQDPVTSIDIEKQ----TLITNSGK--LLKYGSLIV 168 (489)
Q Consensus 105 ~~~--~~~~~~~~~~-~~~~~---~~~----~~~~~~~~~i~~~~~~~V~~id~~~~----~v~~~~g~--~i~yd~lvl 168 (489)
... ...+...... ..... ... +.+.+++.|++++.+++|++++.+.. .+.+.+|. ++.+|.+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~ 160 (421)
T 3nix_A 81 GKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIID 160 (421)
T ss_dssp TTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEE
Confidence 000 0000000000 00000 000 11233456999999999999886533 34557787 699999999
Q ss_pred cCCCCC
Q 011267 169 ATGCTA 174 (489)
Q Consensus 169 ATG~~~ 174 (489)
|+|...
T Consensus 161 A~G~~s 166 (421)
T 3nix_A 161 ASGYGR 166 (421)
T ss_dssp CCGGGC
T ss_pred CCCCch
Confidence 999764
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.55 E-value=6.7e-08 Score=91.92 Aligned_cols=122 Identities=10% Similarity=0.102 Sum_probs=69.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCCCCCCCCccccCC-----CCC-------CCCCCCC-CCc
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAPYERPALTKGYLF-----PLD-------KKPARLP-GFH 115 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~~~y~~~~l~~~~~~-----~~~-------~~~~~~~-~~~ 115 (489)
.++||+|||||++|+++|..|++. |. +|+|||+.+..... .....+.+. ... ..+.... .+.
T Consensus 38 ~~~dVvIIGgG~aGl~aA~~la~~~G~---~V~viEk~~~~gg~-~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~ 113 (284)
T 1rp0_A 38 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPGGG-AWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYV 113 (284)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCCTT-TTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEE
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCC---eEEEEECCCCCCCc-eecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEE
Confidence 467999999999999999999996 65 79999998754211 000000000 000 0000000 000
Q ss_pred cc-cCCCCCCCChhHHHH-CCcEEEeCCcEEEEeCCCCEE---EeC---------CC-----eEEeeCcEEecCCCCCC
Q 011267 116 TC-VGSGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQTL---ITN---------SG-----KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 116 ~~-~~~~~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~~v---~~~---------~g-----~~i~yd~lvlATG~~~~ 175 (489)
.. ........+.+.+.+ .+++++.+++|++++.+...+ .+. +| .++.+|.+|+|||..+.
T Consensus 114 ~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~ 192 (284)
T 1rp0_A 114 VVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP 192 (284)
T ss_dssp EESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence 00 000000011122333 589999999999998655432 331 32 57999999999998664
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.4e-07 Score=92.29 Aligned_cols=118 Identities=17% Similarity=0.242 Sum_probs=69.7
Q ss_pred CcEEEEcCchHHHHHHHHHHH---cCCCCCcEEEEcCCCCCCCC----CC----CC--c--cccCCCCCC----------
Q 011267 52 REFVIVGGGNAAGYAARTFVE---HGMADGRLCIVSKEAYAPYE----RP----AL--T--KGYLFPLDK---------- 106 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~---~g~~~~~V~li~~~~~~~y~----~~----~l--~--~~~~~~~~~---------- 106 (489)
+||+|||||++|+++|+.|++ .|. +|+|+|+++..... +. .. . ..++.....
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~---~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~ 78 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPL---YLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYD 78 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCE---EEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHH
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCc---eEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHH
Confidence 689999999999999999999 765 79999998643210 00 00 0 000000000
Q ss_pred ------CCCCC----------CCCccccCCCCCCCCh-hHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEE
Q 011267 107 ------KPARL----------PGFHTCVGSGGERQTP-EWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLI 167 (489)
Q Consensus 107 ------~~~~~----------~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lv 167 (489)
....+ ................ .+.++.+++++++++|++|+.+.. +|.+.+|.++.+|+||
T Consensus 79 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vV 158 (342)
T 3qj4_A 79 ELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLIV 158 (342)
T ss_dssp HHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEEE
T ss_pred HHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEE
Confidence 00000 0000000111111111 223345899999999999987543 6777788878999999
Q ss_pred ecCCC
Q 011267 168 VATGC 172 (489)
Q Consensus 168 lATG~ 172 (489)
+|+..
T Consensus 159 ~A~p~ 163 (342)
T 3qj4_A 159 LTMPV 163 (342)
T ss_dssp ECSCH
T ss_pred ECCCH
Confidence 99974
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.8e-07 Score=97.97 Aligned_cols=124 Identities=22% Similarity=0.344 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CCcc---------c-----------------c
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-ALTK---------G-----------------Y 100 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l~~---------~-----------------~ 100 (489)
.|+.+||||||||+||+++|..|++.|. +|+|||+.+....... .+.. + +
T Consensus 20 ~M~~~DVvIVGgG~AGl~aA~~Lar~G~---~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~ 96 (591)
T 3i3l_A 20 HMTRSKVAIIGGGPAGSVAGLTLHKLGH---DVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATF 96 (591)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEE
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHcCCC---CEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEE
Confidence 3557899999999999999999999986 7999999854322110 0000 0 0
Q ss_pred CCCCCCCCC--CCCCCcc---ccCCCCC-------CCChhHHHHCCcEEEeCCcEEEEeCC-C--CEEEeC-CC--eEEe
Q 011267 101 LFPLDKKPA--RLPGFHT---CVGSGGE-------RQTPEWYKEKGIEMIYQDPVTSIDIE-K--QTLITN-SG--KLLK 162 (489)
Q Consensus 101 ~~~~~~~~~--~~~~~~~---~~~~~~~-------~~~~~~~~~~~i~~~~~~~V~~id~~-~--~~v~~~-~g--~~i~ 162 (489)
......... .+..... ....... ..+.+.+.+.|++++.+++|+++..+ . ..|.+. +| .++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~ 176 (591)
T 3i3l_A 97 LWGQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVE 176 (591)
T ss_dssp ECSSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEE
T ss_pred EecCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEE
Confidence 000000000 0000000 0000000 00122344679999999999999864 2 256665 66 5799
Q ss_pred eCcEEecCCCCC
Q 011267 163 YGSLIVATGCTA 174 (489)
Q Consensus 163 yd~lvlATG~~~ 174 (489)
+|.+|.|+|...
T Consensus 177 AdlVV~AdG~~S 188 (591)
T 3i3l_A 177 SDFVIDAGGSGG 188 (591)
T ss_dssp ESEEEECCGGGC
T ss_pred cCEEEECCCCcc
Confidence 999999999764
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-07 Score=90.14 Aligned_cols=99 Identities=11% Similarity=0.204 Sum_probs=78.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh--------------------hh---------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ--------------------RL--------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~--------------------~~--------------------- 246 (489)
.+|+|||+|..|+.+|..|++.|.+|+++++.+.+.. ..
T Consensus 5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 84 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI 84 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence 4699999999999999999999999999998764310 00
Q ss_pred ----------------------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC---CCcEEEEEeCCCcEEEcCEEE
Q 011267 247 ----------------------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS---DGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 247 ----------------------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~---~~~v~~v~~~~g~~i~aD~vi 301 (489)
....+.+.+.+.+++.||++++ ++.|+++..++ ++.+ .|.+.+| ++.||.||
T Consensus 85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~-~~~v~~i~~~~~g~~~~~-~v~~~~g-~i~ad~VV 161 (401)
T 2gqf_A 85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILL-RSEVSQVERIQNDEKVRF-VLQVNST-QWQCKNLI 161 (401)
T ss_dssp HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEEC-SCCEEEEEECCSCSSCCE-EEEETTE-EEEESEEE
T ss_pred HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEe-CCEEEEEEcccCcCCCeE-EEEECCC-EEECCEEE
Confidence 1244556778888889999999 99999998541 2333 5777776 79999999
Q ss_pred EccCCCCC
Q 011267 302 IGIGAKPT 309 (489)
Q Consensus 302 ~a~G~~p~ 309 (489)
+|+|..+.
T Consensus 162 lAtG~~s~ 169 (401)
T 2gqf_A 162 VATGGLSM 169 (401)
T ss_dssp ECCCCSSC
T ss_pred ECCCCccC
Confidence 99999884
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.54 E-value=4.1e-08 Score=102.42 Aligned_cols=161 Identities=12% Similarity=0.174 Sum_probs=90.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC-CCCCCCCCccccC-----------CCCC-----------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY-APYERPALTKGYL-----------FPLD----------- 105 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~-~~y~~~~l~~~~~-----------~~~~----------- 105 (489)
...+||+|||||+||++||..|++.|. +|+|||+... .+...+..+.+.. .+..
T Consensus 19 ~~~yDVIVIGgG~AGl~AAlaLAr~G~---kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~ 95 (641)
T 3cp8_A 19 SHMYDVIVVGAGHAGCEAALAVARGGL---HCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQ 95 (641)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEE
T ss_pred cCcCCEEEECccHHHHHHHHHHHHCCC---cEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCc
Confidence 346899999999999999999999986 6999998742 2111111111000 0000
Q ss_pred -C--CCCCCCCCccc---cC-CCCCCCChhHHHH-CCcEEEeCCcEEEEeCCCCE---EEeCCCeEEeeCcEEecCCCCC
Q 011267 106 -K--KPARLPGFHTC---VG-SGGERQTPEWYKE-KGIEMIYQDPVTSIDIEKQT---LITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 106 -~--~~~~~~~~~~~---~~-~~~~~~~~~~~~~-~~i~~~~~~~V~~id~~~~~---v~~~~g~~i~yd~lvlATG~~~ 174 (489)
. ....-+..... .. ........+.+++ .|++++. .+|+.+..+... |.+.+|.++.+|.+|+|||..+
T Consensus 96 f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~-~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s 174 (641)
T 3cp8_A 96 FRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ-DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFL 174 (641)
T ss_dssp EEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE-CCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred hhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe-eEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence 0 00000000000 00 0000011223444 4899865 589988765443 6678888999999999999876
Q ss_pred CCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEE
Q 011267 175 SRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236 (489)
Q Consensus 175 ~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv 236 (489)
.... .++ .... ...++ + |+.++++++..|.+.|.++..+
T Consensus 175 ~~~i-~~G-----~~~~--------------~~g~~--v-G~~~a~~la~~L~~~G~kv~~l 213 (641)
T 3cp8_A 175 NGLI-HIG-----MDHF--------------PGGRS--T-AEPPVEGLTESLASLGFSFGRL 213 (641)
T ss_dssp TCEE-EET-----TEEE--------------ECSSS--T-TSCCBCSHHHHHHHTTCCEEEE
T ss_pred Cccc-eee-----eeee--------------ccccc--c-CCchhhhhHHHHHhCCceEEee
Confidence 4211 111 1111 01121 1 3567788999999999887654
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.1e-07 Score=87.70 Aligned_cols=97 Identities=18% Similarity=0.229 Sum_probs=78.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------------------hhCHHHHHHHHHHHHhcCcEEEEc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVKV 269 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------~~~~~~~~~l~~~l~~~Gv~~~~~ 269 (489)
.+++|||+|+.|+.+|..|++.|.+|+++++.+.+... ....++.+.+.+.+++.|+++++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 84 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVYSL- 84 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEEEE-
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEEEe-
Confidence 57999999999999999999999999999987643110 01256677788888888999999
Q ss_pred CceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 270 GASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 270 ~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+++|+.+...++ ...|.+.+|+++.+|.||+|+|..
T Consensus 85 ~~~v~~i~~~~~--~~~v~~~~g~~~~~~~lv~AtG~~ 120 (335)
T 2zbw_A 85 GERAETLEREGD--LFKVTTSQGNAYTAKAVIIAAGVG 120 (335)
T ss_dssp SCCEEEEEEETT--EEEEEETTSCEEEEEEEEECCTTS
T ss_pred CCEEEEEEECCC--EEEEEECCCCEEEeCEEEECCCCC
Confidence 999999986533 235778888889999999999994
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=98.53 E-value=7.7e-07 Score=87.49 Aligned_cols=99 Identities=15% Similarity=0.196 Sum_probs=80.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------------------hhCHHHHHHHHHHHHhcCcEEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------LFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+... .....+.+.+.+.+++.|+++++
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 93 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPDVVL 93 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCEEEc
Confidence 468999999999999999999999999999987643110 01256777788888889999999
Q ss_pred cCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 269 VGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 269 ~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+++|+.+...+++. ..|.+.+|+++.+|.+|+|+|..
T Consensus 94 -~~~v~~i~~~~~~~-~~v~~~~g~~~~~~~li~AtG~~ 130 (360)
T 3ab1_A 94 -NETVTKYTKLDDGT-FETRTNTGNVYRSRAVLIAAGLG 130 (360)
T ss_dssp -SCCEEEEEECTTSC-EEEEETTSCEEEEEEEEECCTTC
T ss_pred -CCEEEEEEECCCce-EEEEECCCcEEEeeEEEEccCCC
Confidence 99999998654433 35788888899999999999994
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.3e-07 Score=94.06 Aligned_cols=101 Identities=24% Similarity=0.407 Sum_probs=78.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-h-hhCH---------HHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-R-LFTP---------SLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-~-~~~~---------~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
...+|+|||+|+.|+.+|..|...+.+|+++++.+.+.- + .++. ++.....+.+++.||++++ +++|+
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~-~~~V~ 86 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVIT-SEFAT 86 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEEC-SCCEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEe-CCEEE
Confidence 456899999999999999999888899999998865311 0 0111 1112345667788999999 99999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
+++.. .+ .|++++|+++.+|.+|+|||.+|...
T Consensus 87 ~id~~--~~--~v~~~~g~~~~yd~lvlAtG~~p~~p 119 (385)
T 3klj_A 87 SIDPN--NK--LVTLKSGEKIKYEKLIIASGSIANKI 119 (385)
T ss_dssp EEETT--TT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEECC--CC--EEEECCCCEEECCEEEEecCCCcCCC
Confidence 99843 23 57889999999999999999988754
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-07 Score=88.92 Aligned_cols=102 Identities=15% Similarity=0.213 Sum_probs=79.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC----cc------------hhh----hhCHHHHHHHHHHHHhcCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN----HL------------LQR----LFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~----~~------------l~~----~~~~~~~~~l~~~l~~~Gv~ 265 (489)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+ .+ .+. ....++...+.+.+++.|++
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 100 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGTE 100 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCCE
Confidence 35789999999999999999999999999999843 11 011 12357788888999999999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEe---CCCcEEEcCEEEEccCCCCCCc
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKL---EDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~---~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++. ++ |+++... ++.+ .+.+ .++.++.+|.+|+|+|..|...
T Consensus 101 i~~-~~-v~~i~~~-~~~~-~v~~~~~~~~~~~~~d~vvlAtG~~~~~~ 145 (338)
T 3itj_A 101 IIT-ET-VSKVDLS-SKPF-KLWTEFNEDAEPVTTDAIILATGASAKRM 145 (338)
T ss_dssp EEC-SC-EEEEECS-SSSE-EEEETTCSSSCCEEEEEEEECCCEEECCC
T ss_pred EEE-eE-EEEEEEc-CCEE-EEEEEecCCCcEEEeCEEEECcCCCcCCC
Confidence 999 87 9999854 3333 4555 3677899999999999987643
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=5.9e-07 Score=93.19 Aligned_cols=102 Identities=17% Similarity=0.191 Sum_probs=82.4
Q ss_pred CcEEEECCCHHHHHHHHHHH-hCCCcEEEEccCCcchh--------h----------------------------hhCHH
Q 011267 208 KKVVVVGGGYIGMEVAAAAV-GWKLDTTIIFPENHLLQ--------R----------------------------LFTPS 250 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~-~~g~~V~lv~~~~~~l~--------~----------------------------~~~~~ 250 (489)
.+|+|||+|+.|+.+|..|+ +.|.+|+++++.+.+.. . ...++
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e 88 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE 88 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence 47999999999999999999 99999999998653210 0 00246
Q ss_pred HHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC--CCCC
Q 011267 251 LAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA--KPTV 310 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~--~p~~ 310 (489)
+.+.+.+..++.|+ ++++ +++|+++..++++....|.+.+|+++.||.||+|+|. +|..
T Consensus 89 i~~~l~~~~~~~g~~~~i~~-~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 89 ILEYLEDVVDRFDLRRHFKF-GTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp HHHHHHHHHHHTTCGGGEEE-SCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCC
T ss_pred HHHHHHHHHHHcCCcceeEe-ccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCC
Confidence 67788888888998 8999 9999999876665556788999999999999999994 5553
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-07 Score=95.68 Aligned_cols=101 Identities=22% Similarity=0.334 Sum_probs=78.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCcchhhh----------hCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------FTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~---~g~~V~lv~~~~~~l~~~----------~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
-++|+|||||+.|+.+|..|++ .+.+|+++++.+.+.... ...++...+.+.+++.||+++. .++
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~--~~v 81 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA--QSA 81 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC--SCE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE--eEE
Confidence 3689999999999999999999 789999999987541110 1123333456778889999976 689
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
+.++.+ ++ .|.+++|+++.+|.+|+|+|.+|+...+
T Consensus 82 ~~id~~--~~--~V~~~~g~~i~~d~lviAtG~~~~~~~i 117 (437)
T 3sx6_A 82 EQIDAE--AQ--NITLADGNTVHYDYLMIATGPKLAFENV 117 (437)
T ss_dssp EEEETT--TT--EEEETTSCEEECSEEEECCCCEECGGGS
T ss_pred EEEEcC--CC--EEEECCCCEEECCEEEECCCCCcCcccC
Confidence 999743 22 5788899899999999999999875433
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.1e-07 Score=94.24 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+++.|++++.+++|++++.+.. .|.+.+| ++.+|.+|+|+|...
T Consensus 173 ~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g-~~~a~~vV~A~G~~s 219 (382)
T 1ryi_A 173 AAKMLGAEIFEHTPVLHVERDGEALFIKTPSG-DVWANHVVVASGVWS 219 (382)
T ss_dssp HHHHTTCEEETTCCCCEEECSSSSEEEEETTE-EEEEEEEEECCGGGT
T ss_pred HHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc-eEEcCEEEECCChhH
Confidence 34567999999999999987554 4566666 799999999999754
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=98.50 E-value=5.3e-07 Score=85.82 Aligned_cols=100 Identities=11% Similarity=0.235 Sum_probs=77.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------h---hhhCHHHHHHHHHHHHhc-CcEEEEcCceEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------Q---RLFTPSLAQRYEQLYQQN-GVKFVKVGASIK 274 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------~---~~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~ 274 (489)
.+++|||+|+.|+.+|..|++.|.+|+++++.+... + .....++...+.+.+++. +++++. .+|+
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~v~ 80 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEARRQIERYPTIHWVE--GRVT 80 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHHHHHHTTCTTEEEEE--SCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHHHHHHHhcCCeEEEE--eEEE
Confidence 479999999999999999999999999999753211 1 011246677788888877 788877 5899
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
.+...+++ ..|.+.+|+++.+|.+|+|+|..|...
T Consensus 81 ~i~~~~~~--~~v~~~~g~~~~~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 81 DAKGSFGE--FIVEIDGGRRETAGRLILAMGVTDELP 115 (297)
T ss_dssp EEEEETTE--EEEEETTSCEEEEEEEEECCCCEEECC
T ss_pred EEEEcCCe--EEEEECCCCEEEcCEEEECCCCCCCCC
Confidence 99865333 367888998999999999999987643
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.8e-07 Score=92.90 Aligned_cols=39 Identities=26% Similarity=0.411 Sum_probs=34.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
|++|||+||||||||++||..|+++|+ +|+|+|+.+..+
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G~---~V~v~Er~~~~~ 40 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYGL---KTLMIEKRPEIG 40 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSTT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCC
Confidence 456999999999999999999999988 699999976543
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=98.50 E-value=5.9e-07 Score=86.22 Aligned_cols=101 Identities=20% Similarity=0.268 Sum_probs=78.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--cch---------h--hhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL---------Q--RLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~--~~l---------~--~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+++|||+|+.|+.+|..|++.|.+|+++++.. .+. . ....+.+.+.+.+.+++.|++++. +++|+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~v~li~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~v~~ 81 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVID-SQSASK 81 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEEC-SCCEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEc-cCEEEE
Confidence 68999999999999999999999999997531 111 0 011246777888888999999999 999999
Q ss_pred EEeCCC-CcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 276 LEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 276 i~~~~~-~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
+....+ +....|.+++|+++.+|.+|+|+|..|..
T Consensus 82 i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~ 117 (310)
T 1fl2_A 82 LIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRN 117 (310)
T ss_dssp EECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEecccCCceEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 975322 22346788888899999999999998764
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=6.2e-07 Score=93.86 Aligned_cols=141 Identities=15% Similarity=0.169 Sum_probs=93.9
Q ss_pred ecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhc----CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch
Q 011267 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLE----KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (489)
Q Consensus 168 lATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~----~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l 243 (489)
.++.+........+....++...++...+...+...+. ....|+|||+|..|+.+|..|++.|.+|+++++.+.+.
T Consensus 78 ~c~~ch~~~~~~~p~~~~~~~~~w~~~~~~~~i~~~i~~~~~~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~g 157 (566)
T 1qo8_A 78 YCNECHSFDIKPMPFSDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSG 157 (566)
T ss_dssp GGGGTCCCCCCCCTTTTSCCCCCSCCCCCHHHHHHHHHTCCSEEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSC
T ss_pred hhhhhcCCCcCCCCCCCCCCCcccccccccHHHHHhhccCCCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCC
Confidence 34555443312233444444444444333333322222 23479999999999999999999999999999875321
Q ss_pred hh------------------------------------------------------------------------------
Q 011267 244 QR------------------------------------------------------------------------------ 245 (489)
Q Consensus 244 ~~------------------------------------------------------------------------------ 245 (489)
..
T Consensus 158 g~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~ 237 (566)
T 1qo8_A 158 GNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVD 237 (566)
T ss_dssp TTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSC
T ss_pred CcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCC
Confidence 00
Q ss_pred ---------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC--CCc--EEEcCEEEEccCCCCC
Q 011267 246 ---------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE--DGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 ---------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~--~g~--~i~aD~vi~a~G~~p~ 309 (489)
.....+...+.+.+++.||++++ ++.|+++..++++++.+|++. +|+ ++.+|.||+|+|....
T Consensus 238 r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~-~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~ 313 (566)
T 1qo8_A 238 RTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRL-NSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM 313 (566)
T ss_dssp CEEECSSSSCHHHHHHHHHHHHHHHTTCCEEC-SEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred ceeecCCCCCCHHHHHHHHHHHHHhcCCEEEe-CCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence 00123445667777889999999 999999986543777777765 675 6899999999997654
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=7.6e-07 Score=88.26 Aligned_cols=97 Identities=21% Similarity=0.252 Sum_probs=79.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------h-------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------R------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------~------------------------- 245 (489)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.. +
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~ 90 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS 90 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence 46899999999999999999999999999998754311 0
Q ss_pred --hh-----------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 246 --LF-----------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 --~~-----------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+ ...+.+.+.+.+++.|+++++ +++|++++. ++ .|++.+|+++.+|.||.|+|..+.
T Consensus 91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~-~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s~ 161 (379)
T 3alj_A 91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISV-NSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGSK 161 (379)
T ss_dssp EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEES-SCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTCH
T ss_pred eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEe-CCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccHH
Confidence 00 045567788888889999999 999999985 34 577888989999999999999774
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=8.2e-07 Score=90.12 Aligned_cols=111 Identities=24% Similarity=0.389 Sum_probs=86.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------h-----------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-------------------R----------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-------------------~----------------------- 245 (489)
..|+|||||..|+.+|..|++.|.+|+++++.+.+.. .
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED 106 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence 5799999999999999999999999999998753210 0
Q ss_pred -------------------hh-----CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEE
Q 011267 246 -------------------LF-----TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301 (489)
Q Consensus 246 -------------------~~-----~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi 301 (489)
.+ ...+.+.+.+.+++.||++++ +++|+++..+ ++.+..|.+.+|+++.||.||
T Consensus 107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~-~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VV 184 (447)
T 2i0z_A 107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRT-NTPVETIEYE-NGQTKAVILQTGEVLETNHVV 184 (447)
T ss_dssp HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEETTCCEEECSCEE
T ss_pred HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEe-CcEEEEEEec-CCcEEEEEECCCCEEECCEEE
Confidence 00 134455677778889999999 9999999854 566678889999889999999
Q ss_pred EccCCCCCC---------chhhhcCCee
Q 011267 302 IGIGAKPTV---------SPFERVGLNS 320 (489)
Q Consensus 302 ~a~G~~p~~---------~~~~~~gl~~ 320 (489)
+|+|..+.. .+++.+|+..
T Consensus 185 lAtGg~s~~~~g~tG~g~~la~~~G~~~ 212 (447)
T 2i0z_A 185 IAVGGKSVPQTGSTGDGYAWAEKAGHTI 212 (447)
T ss_dssp ECCCCSSSGGGSCSSHHHHHHHHTTCCE
T ss_pred ECCCCCcCCCCCCCcHHHHHHHHCCCCc
Confidence 999987721 3556666654
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.9e-07 Score=91.71 Aligned_cols=57 Identities=19% Similarity=0.370 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
..+.+.+.+.+++.|+++++ ++.|++|..+ ++++..|+++ |+++.||.||+|++...
T Consensus 196 ~~l~~~l~~~~~~~G~~i~~-~~~V~~i~~~-~~~~~gv~~~-g~~~~ad~VV~a~~~~~ 252 (425)
T 3ka7_A 196 KGIIDALETVISANGGKIHT-GQEVSKILIE-NGKAAGIIAD-DRIHDADLVISNLGHAA 252 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEET-TEEEECSEEEECSCHHH
T ss_pred HHHHHHHHHHHHHcCCEEEE-CCceeEEEEE-CCEEEEEEEC-CEEEECCEEEECCCHHH
Confidence 46778888999999999999 9999999864 4566667775 77899999999998643
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-06 Score=84.82 Aligned_cols=100 Identities=20% Similarity=0.301 Sum_probs=79.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC--Ccch--------h---hhhCHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE--NHLL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~--~~~l--------~---~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.+|+|||+|+.|+.+|..|++.|.+|+++++. ..+. + .....++.+.+.+.+++.|++++. +.|+
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~v~ 93 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGETPGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLL--DIVE 93 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSTTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEE--SCEE
T ss_pred cCEEEECccHHHHHHHHHHHHCCCcEEEEeccCCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEE--EEEE
Confidence 58999999999999999999999999999985 1111 1 112357778888889999999998 7889
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++..+++ . ..+.+.+|+++.+|.+|+|+|..|...
T Consensus 94 ~i~~~~~-~-~~v~~~~g~~~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 94 KIENRGD-E-FVVKTKRKGEFKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEEC---C-EEEEESSSCEEEEEEEEECCCCEECCC
T ss_pred EEEecCC-E-EEEEECCCCEEEcCEEEECcCCCCccC
Confidence 9875432 2 357888888999999999999987643
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=94.45 Aligned_cols=125 Identities=12% Similarity=0.042 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCC---------------Cccc------------c
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPA---------------LTKG------------Y 100 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~---------------l~~~------------~ 100 (489)
.++++||+|||||++|+++|..|++.|. +|+|+|+.+........ +... +
T Consensus 20 ~~~~~dV~IVGaG~aGl~~A~~La~~G~---~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~ 96 (407)
T 3rp8_A 20 FQGHMKAIVIGAGIGGLSAAVALKQSGI---DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAY 96 (407)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEE
Confidence 4457899999999999999999999987 79999998653210000 0000 0
Q ss_pred CCCC-CCCCCCCCCCc--ccc-CCCCC---CCChhHHHH--CCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEec
Q 011267 101 LFPL-DKKPARLPGFH--TCV-GSGGE---RQTPEWYKE--KGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVA 169 (489)
Q Consensus 101 ~~~~-~~~~~~~~~~~--~~~-~~~~~---~~~~~~~~~--~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlA 169 (489)
.... ......++... ... ..... ..+...+.+ ..++++.+++|+.++.+.. ++++.+|+++.+|.||.|
T Consensus 97 ~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~A 176 (407)
T 3rp8_A 97 RDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGRDSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAA 176 (407)
T ss_dssp EETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCGGGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEEC
T ss_pred EECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCcCEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEEC
Confidence 0000 00000000000 000 00000 001112211 1277889999999986554 567789999999999999
Q ss_pred CCCCCC
Q 011267 170 TGCTAS 175 (489)
Q Consensus 170 TG~~~~ 175 (489)
+|....
T Consensus 177 dG~~S~ 182 (407)
T 3rp8_A 177 DGSHSA 182 (407)
T ss_dssp CCTTCS
T ss_pred CCcChH
Confidence 998653
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.5e-07 Score=94.14 Aligned_cols=99 Identities=17% Similarity=0.282 Sum_probs=75.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||++|+.+|..|++.|. +|+++++.+... |.... .+ .....+.
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~~g~---~V~lv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 217 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHRLGA---EVIVLEYMDRIL---PTMDL-----------EV-----------SRAAERV 217 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999876 799999876521 10000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.+++|.+++.+.. .+.+.+|.++.+|.+|+|||..|..
T Consensus 218 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~ 266 (455)
T 2yqu_A 218 FKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYT 266 (455)
T ss_dssp HHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECC
T ss_pred HHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCC
Confidence 7788999999999999987654 4556688889999999999988763
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.7e-07 Score=96.02 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+.++||+|||||++|+++|..|+++|. +|+|||+.+..
T Consensus 3 ~~~~dVlIVGaG~aGl~~A~~La~~G~---~v~viEr~~~~ 40 (535)
T 3ihg_A 3 DHEVDVLVVGAGLGGLSTAMFLARQGV---RVLVVERRPGL 40 (535)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSSSC
T ss_pred CccCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence 356899999999999999999999987 69999998653
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6e-07 Score=94.15 Aligned_cols=37 Identities=38% Similarity=0.553 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~li~~~~~~ 89 (489)
+.+||||||||+||+++|..|++. |. +|+|||+.+..
T Consensus 34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~---~V~vlEk~~~~ 76 (584)
T 2gmh_A 34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDL---RVCLVEKAAHI 76 (584)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHTTCCC---CEEEECSSSST
T ss_pred cCCCEEEECcCHHHHHHHHHHHhcccccCCCC---cEEEEeCCCCC
Confidence 358999999999999999999998 66 79999998654
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=4.5e-07 Score=95.01 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
...+||||||||+||++||..|++.|. +|+|||+.+..
T Consensus 124 ~~~~DVvVVGaG~aGl~aA~~la~~G~---~V~vlEk~~~~ 161 (571)
T 1y0p_A 124 HDTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI 161 (571)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 346899999999999999999999986 69999998754
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.6e-07 Score=96.64 Aligned_cols=121 Identities=14% Similarity=0.191 Sum_probs=72.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC---------------CCCccccCCCCCCCCCC--
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER---------------PALTKGYLFPLDKKPAR-- 110 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~---------------~~l~~~~~~~~~~~~~~-- 110 (489)
..+++||+|||||++|+++|..|++.|. +|+|||+.+...... ..+...+... ....
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~---~~~~~~ 81 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRLAGV---EVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEV---ETSTQG 81 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSC---CBCCEE
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhc---cccccc
Confidence 4567899999999999999999999987 699999986532110 0000000000 0000
Q ss_pred -CCCC--ccc-cCCCC-----------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCe---EEeeCcEEecC
Q 011267 111 -LPGF--HTC-VGSGG-----------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVAT 170 (489)
Q Consensus 111 -~~~~--~~~-~~~~~-----------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~---~i~yd~lvlAT 170 (489)
+.+. ... ..... ...+.+.+.+.+++++.+++|++++.+.. ++++.++. ++.+|+||.|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgAD 161 (500)
T 2qa1_A 82 HFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCD 161 (500)
T ss_dssp EETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECC
T ss_pred cccceecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECC
Confidence 0000 000 00000 00011233456899999999999976544 45555553 78999999999
Q ss_pred CCCC
Q 011267 171 GCTA 174 (489)
Q Consensus 171 G~~~ 174 (489)
|...
T Consensus 162 G~~S 165 (500)
T 2qa1_A 162 GGRS 165 (500)
T ss_dssp CTTC
T ss_pred Ccch
Confidence 9875
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-07 Score=92.34 Aligned_cols=103 Identities=14% Similarity=0.157 Sum_probs=80.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------------------------h---------hh--hCHH
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------Q---------RL--FTPS 250 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------~---------~~--~~~~ 250 (489)
..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. + .. -.++
T Consensus 9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~e 88 (545)
T 3uox_A 9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPE 88 (545)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHH
T ss_pred CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHH
Confidence 3579999999999999999999999999999875320 0 00 1256
Q ss_pred HHHHHHHHHHhcCc--EEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC--CCCCC
Q 011267 251 LAQRYEQLYQQNGV--KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG--AKPTV 310 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G--~~p~~ 310 (489)
+.+.+.+..++.|+ .+++ +++|+++..++++....|.+++|+++.||.||+|+| .+|+.
T Consensus 89 i~~yl~~~~~~~~l~~~i~~-~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~ 151 (545)
T 3uox_A 89 MLRYVNRAADAMDVRKHYRF-NTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRM 151 (545)
T ss_dssp HHHHHHHHHHHHTCGGGEEC-SCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---
T ss_pred HHHHHHHHHHHcCCcCcEEE-CCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcC
Confidence 77788888888887 7888 999999986655455578899999999999999999 55653
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=83.00 Aligned_cols=100 Identities=10% Similarity=0.158 Sum_probs=71.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc---c-------h--hhhhCHHHHHHHHHHHHhcC-cEEEEcCceEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L-------L--QRLFTPSLAQRYEQLYQQNG-VKFVKVGASIK 274 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~-------l--~~~~~~~~~~~l~~~l~~~G-v~~~~~~~~v~ 274 (489)
-.|+|||+|+.|+.+|..+++.|.+|+++++... + . +...++++.+...+.+.+.+ +.++. ..+.
T Consensus 7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 84 (304)
T 4fk1_A 7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYE--KTVV 84 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEE--CCEE
T ss_pred cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEe--eEEE
Confidence 3589999999999999999999999999987531 0 0 01123455555555555555 55554 5666
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.+...+++. ..+.+.+|+++.+|.||+|||.+|..
T Consensus 85 ~~~~~~~~~-~~v~~~~g~~~~a~~liiATGs~p~~ 119 (304)
T 4fk1_A 85 MITKQSTGL-FEIVTKDHTKYLAERVLLATGMQEEF 119 (304)
T ss_dssp EEEECTTSC-EEEEETTCCEEEEEEEEECCCCEEEC
T ss_pred EeeecCCCc-EEEEECCCCEEEeCEEEEccCCcccc
Confidence 665444444 36888999999999999999998764
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=4.4e-07 Score=91.64 Aligned_cols=96 Identities=24% Similarity=0.358 Sum_probs=72.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchhhhhCH----------HHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTP----------SLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~~~----------~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
|+|+|||||+.|+.+|..|++++ .+|++|++.+.+.-...-+ ++...+.+.+++.||+++. .+|++
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~--~~v~~ 80 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFIN--EKAES 80 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEEC--SCEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEE--eEEEE
Confidence 68999999999999999999876 6899999987542111111 1111234556778999987 57999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
|+.+ .+ .|++++|+++++|.+|+|+|.++.
T Consensus 81 Id~~--~~--~V~~~~g~~i~YD~LViAtG~~~~ 110 (430)
T 3hyw_A 81 IDPD--AN--TVTTQSGKKIEYDYLVIATGPKLV 110 (430)
T ss_dssp EETT--TT--EEEETTCCEEECSEEEECCCCEEE
T ss_pred EECC--CC--EEEECCCCEEECCEEEEeCCCCcc
Confidence 9843 33 578899999999999999998753
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-07 Score=96.79 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
...+||||||||+||++||..|++.|. +|+|||+.+..
T Consensus 119 ~~~~DVvVVG~G~aGl~aA~~la~~G~---~V~vlEk~~~~ 156 (566)
T 1qo8_A 119 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPFS 156 (566)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSSS
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 356799999999999999999999986 79999998754
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-07 Score=95.07 Aligned_cols=123 Identities=14% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---------------CCccccCCCCCCCC-CCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---------------ALTKGYLFPLDKKP-ARL 111 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---------------~l~~~~~~~~~~~~-~~~ 111 (489)
..+++||+|||||++|+++|..|++.|. +|+|||+.+....... .+...+.. ..... ..+
T Consensus 9 ~~~~~dVlIVGaGpaGl~~A~~La~~G~---~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~-~~~~~~~~~ 84 (499)
T 2qa2_A 9 HRSDASVIVVGAGPAGLMLAGELRLGGV---DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGP-VETSTQGHF 84 (499)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCS-CCEESEEEE
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHh-cccccccee
Confidence 3467899999999999999999999987 6999999865421100 00000000 00000 000
Q ss_pred CCC--ccc-cCCCC-----------CCCChhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCe---EEeeCcEEecCCC
Q 011267 112 PGF--HTC-VGSGG-----------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGK---LLKYGSLIVATGC 172 (489)
Q Consensus 112 ~~~--~~~-~~~~~-----------~~~~~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~---~i~yd~lvlATG~ 172 (489)
.+. ... ..... ...+.+.+.+.+++++.+++|++++.+.. ++++.++. ++.+|+||.|.|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~ 164 (499)
T 2qa2_A 85 GGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGG 164 (499)
T ss_dssp TTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCT
T ss_pred cceecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCc
Confidence 000 000 00000 00011233456899999999999976543 56666664 7999999999998
Q ss_pred CC
Q 011267 173 TA 174 (489)
Q Consensus 173 ~~ 174 (489)
..
T Consensus 165 ~S 166 (499)
T 2qa2_A 165 RS 166 (499)
T ss_dssp TC
T ss_pred cc
Confidence 75
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-06 Score=87.96 Aligned_cols=103 Identities=17% Similarity=0.214 Sum_probs=77.8
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCc---EEEEccCCcchhh------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG---WKLD---TTIIFPENHLLQR------------------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~---~g~~---V~lv~~~~~~l~~------------------------------------ 245 (489)
++|+|||+|+.|+.+|..|++ .|.+ |+++++.+.+...
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 579999999999999999999 9999 9999987532100
Q ss_pred --------------h-hCHHHHHHHHHHHHhcCcE--EEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEc
Q 011267 246 --------------L-FTPSLAQRYEQLYQQNGVK--FVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIG 303 (489)
Q Consensus 246 --------------~-~~~~~~~~l~~~l~~~Gv~--~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a 303 (489)
. -...+.+++.+.+++.|++ +++ +++|+.+...+++....|++.+ | .++.+|.||+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~-~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA 161 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRF-NTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC 161 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEEC-SEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEe-CCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence 0 0135666777888888998 888 9999999865443223455544 4 57899999999
Q ss_pred cC--CCCCCc
Q 011267 304 IG--AKPTVS 311 (489)
Q Consensus 304 ~G--~~p~~~ 311 (489)
+| ..|+.+
T Consensus 162 tG~~s~p~~p 171 (464)
T 2xve_A 162 TGHFSTPYVP 171 (464)
T ss_dssp CCSSSSBCCC
T ss_pred CCCCCCCccC
Confidence 99 677654
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=87.35 Aligned_cols=110 Identities=17% Similarity=0.205 Sum_probs=83.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------hhhh---------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------LQRL--------------------------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------l~~~--------------------------------- 246 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.. .+..
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA 85 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence 47999999999999999999999999999986410 0000
Q ss_pred -----------------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEccCC
Q 011267 247 -----------------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGA 306 (489)
Q Consensus 247 -----------------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~aD~vi~a~G~ 306 (489)
+ ...+...+.+.+++.|++++. +++|+++...+++.+..+.+.+|+ ++.||.||.|+|.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~-~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G~ 164 (421)
T 3nix_A 86 DFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEY-EVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASGY 164 (421)
T ss_dssp EEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEEC-SEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCGG
T ss_pred EEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCCC
Confidence 0 124556677777888999999 999999987655555567778887 7999999999998
Q ss_pred CCCCchhhhcCCee
Q 011267 307 KPTVSPFERVGLNS 320 (489)
Q Consensus 307 ~p~~~~~~~~gl~~ 320 (489)
.+ .+.+.++++.
T Consensus 165 ~s--~l~~~~g~~~ 176 (421)
T 3nix_A 165 GR--VIPRMFGLDK 176 (421)
T ss_dssp GC--HHHHHTTCEE
T ss_pred ch--hhHHhcCCCC
Confidence 76 3444555543
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2.2e-06 Score=89.71 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=79.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------------------------------- 245 (489)
...|+|||+|..|+.+|..|++.|.+|+++++.+.+...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~ 205 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND 205 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence 357999999999999999999999999999986532100
Q ss_pred ----------------------------------------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 246 ----------------------------------------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 246 ----------------------------------------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
..+..+...+.+.+++.||++++ ++.|+++..+
T Consensus 206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~-~~~v~~l~~~ 284 (571)
T 1y0p_A 206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRM-NTRGIEVLKD 284 (571)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEES-SEEEEEEEEC
T ss_pred HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEe-CCEeeEeEEc
Confidence 00134455677777889999999 9999999865
Q ss_pred CCCcEEEEEeC--CCc--EEEcCEEEEccCCCC
Q 011267 280 SDGRVAAVKLE--DGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 280 ~~~~v~~v~~~--~g~--~i~aD~vi~a~G~~p 308 (489)
+++++.+|++. +|+ ++.+|.||+|+|...
T Consensus 285 ~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 285 DKGTVKGILVKGMYKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp TTSCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred CCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcc
Confidence 44777777665 675 689999999999854
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.4e-06 Score=84.02 Aligned_cols=97 Identities=16% Similarity=0.250 Sum_probs=75.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcchh---------------------h--------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ---------------------R-------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~l~---------------------~-------------------- 245 (489)
.+|+|||+|+.|+.+|..|++.|. +|+++++.+ +.. .
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 83 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFNEE 83 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHCCS
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccccc
Confidence 469999999999999999999999 999999875 100 0
Q ss_pred -hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 246 -LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 -~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.....+...+.+.+++.|+++++ ++.|+++...+++ ..|.+.++ ++.+|.||+|+|..+.
T Consensus 84 ~~~~~~~~~~l~~~~~~~gv~i~~-~~~v~~i~~~~~~--~~v~~~~g-~~~~d~vVlAtG~~~~ 144 (369)
T 3d1c_A 84 HISGETYAEYLQVVANHYELNIFE-NTVVTNISADDAY--YTIATTTE-TYHADYIFVATGDYNF 144 (369)
T ss_dssp SCBHHHHHHHHHHHHHHTTCEEEC-SCCEEEEEECSSS--EEEEESSC-CEEEEEEEECCCSTTS
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEe-CCEEEEEEECCCe--EEEEeCCC-EEEeCEEEECCCCCCc
Confidence 00134556677778889999999 9999999865433 24667776 6999999999999754
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.6e-06 Score=83.81 Aligned_cols=100 Identities=22% Similarity=0.269 Sum_probs=77.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc---c--------hhh----hhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~--------l~~----~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
.+++|||+|+.|+.+|..|++.|.+|+++++... + .+. .....+.+.+.+.+++.|++++. .+
T Consensus 9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~--~~ 86 (325)
T 2q7v_A 9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVEM--DE 86 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEEE--CC
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCCCCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEEe--ee
Confidence 5799999999999999999999999999998721 0 111 01246677788888899999988 48
Q ss_pred EEEEEeC--CCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 273 IKNLEAG--SDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 273 v~~i~~~--~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
++++... ++. ...|.+.+|+++.+|.+|+|+|..|..
T Consensus 87 v~~i~~~~~~~~-~~~v~~~~g~~~~~~~vv~AtG~~~~~ 125 (325)
T 2q7v_A 87 VQGVQHDATSHP-YPFTVRGYNGEYRAKAVILATGADPRK 125 (325)
T ss_dssp EEEEEECTTSSS-CCEEEEESSCEEEEEEEEECCCEEECC
T ss_pred EEEEEeccCCCc-eEEEEECCCCEEEeCEEEECcCCCcCC
Confidence 8888754 222 124566788899999999999998764
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4.3e-08 Score=99.83 Aligned_cols=123 Identities=16% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-CC-CC--CccccC--CC-CCCCCC----CCCCCcccc
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-ER-PA--LTKGYL--FP-LDKKPA----RLPGFHTCV 118 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-~~-~~--l~~~~~--~~-~~~~~~----~~~~~~~~~ 118 (489)
+++||+|||||+||+++|..|++.|. +|+|+|+.+.... .. .. ++...+ .. ...... ...+.....
T Consensus 5 ~~~dVvIVGaG~aGl~aA~~La~~G~---~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~ 81 (453)
T 3atr_A 5 LKYDVLIIGGGFAGSSAAYQLSRRGL---KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYS 81 (453)
T ss_dssp EECSEEEECCSHHHHHHHHHHSSSSC---CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEEC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEEC
Confidence 35899999999999999999999887 7999999764210 10 00 000000 00 000000 000000000
Q ss_pred CC----------CC-------CCCChhHHHHCCcEEEeCCcEEEEeCCCCE---EEeC---CCe--EEeeCcEEecCCCC
Q 011267 119 GS----------GG-------ERQTPEWYKEKGIEMIYQDPVTSIDIEKQT---LITN---SGK--LLKYGSLIVATGCT 173 (489)
Q Consensus 119 ~~----------~~-------~~~~~~~~~~~~i~~~~~~~V~~id~~~~~---v~~~---~g~--~i~yd~lvlATG~~ 173 (489)
.. .. ...+.+.+.+.|++++.+++|++++.+... |++. +|+ ++.+|.||.|+|..
T Consensus 82 ~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~ 161 (453)
T 3atr_A 82 PDMQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYS 161 (453)
T ss_dssp TTSSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGG
T ss_pred CCCceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCc
Confidence 00 00 000112234578999999999998866544 3443 665 78999999999976
Q ss_pred CC
Q 011267 174 AS 175 (489)
Q Consensus 174 ~~ 175 (489)
..
T Consensus 162 s~ 163 (453)
T 3atr_A 162 RS 163 (453)
T ss_dssp CT
T ss_pred hh
Confidence 54
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=4.6e-07 Score=90.57 Aligned_cols=99 Identities=22% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchhhhhCHHHH---------HHHHHHHHhcCcEEEEcCceEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQRLFTPSLA---------QRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~~~~~~~~~---------~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+|+|+|||+|+.|+.+|..|++.+ .+|++|++.+......+...+. ..-.+.+.+.||+++. .+|+.
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~--~~v~~ 79 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVH--DSALG 79 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEEC--SCEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEE--eEEEE
Confidence 689999999999999999998876 4799999887532111111110 0111345668999987 57999
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
|+.+ .+ .+.+.+|+++.+|.+|+|+|.+++..
T Consensus 80 id~~--~~--~v~~~~g~~i~yd~LviAtG~~~~~~ 111 (401)
T 3vrd_B 80 IDPD--KK--LVKTAGGAEFAYDRCVVAPGIDLLYD 111 (401)
T ss_dssp EETT--TT--EEEETTSCEEECSEEEECCCEEECGG
T ss_pred EEcc--Cc--EEEecccceeecceeeeccCCccccC
Confidence 9743 33 47889999999999999999988643
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.37 E-value=4.7e-07 Score=93.61 Aligned_cols=124 Identities=18% Similarity=0.256 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC-CC-c---cccC-------------CC-------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP-AL-T---KGYL-------------FP------- 103 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~-~l-~---~~~~-------------~~------- 103 (489)
+.++||+|||||++|+++|..|++.|+ +|+|||+.+...+... .+ + ..++ ..
T Consensus 5 ~~~~dVvIVGgG~aGl~aA~~La~~G~---~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 81 (512)
T 3e1t_A 5 PEVFDLIVIGGGPGGSTLASFVAMRGH---RVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTF 81 (512)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEE
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCC---CEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceE
Confidence 345899999999999999999999887 7999999863221100 00 0 0000 00
Q ss_pred -CCCCCC----CCCCCccccCCCCC-C-------CChhHHHHCCcEEEeCCcEEEEeCCCCE---E--EeCCCe--EEee
Q 011267 104 -LDKKPA----RLPGFHTCVGSGGE-R-------QTPEWYKEKGIEMIYQDPVTSIDIEKQT---L--ITNSGK--LLKY 163 (489)
Q Consensus 104 -~~~~~~----~~~~~~~~~~~~~~-~-------~~~~~~~~~~i~~~~~~~V~~id~~~~~---v--~~~~g~--~i~y 163 (489)
...... .+............ . .+.+.+.+.|++++.+++|+++..+... + ...+|. ++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~a 161 (512)
T 3e1t_A 82 RWGKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHA 161 (512)
T ss_dssp ECSSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEE
T ss_pred EecCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEc
Confidence 000000 00000000000000 0 0122334579999999999999876542 3 334574 7999
Q ss_pred CcEEecCCCCCC
Q 011267 164 GSLIVATGCTAS 175 (489)
Q Consensus 164 d~lvlATG~~~~ 175 (489)
|.+|.|+|....
T Consensus 162 d~VI~AdG~~S~ 173 (512)
T 3e1t_A 162 RFIVDASGNRTR 173 (512)
T ss_dssp EEEEECCCTTCS
T ss_pred CEEEECCCcchH
Confidence 999999998754
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.6e-07 Score=92.71 Aligned_cols=98 Identities=21% Similarity=0.335 Sum_probs=74.6
Q ss_pred CcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCcchhh----------hhCHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~---~g~~V~lv~~~~~~l~~----------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
++|+|||||+.|+.+|..|++ .|.+|+++++.+.+... ....++...+.+.+++.|++++. + +|+
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~-~v~ 79 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQE-G-TVE 79 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEE-C-EEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEE-e-eEE
Confidence 579999999999999999999 89999999988754211 01122334466777889999998 6 999
Q ss_pred EEEeCCCCcEEEEEeCCCc----EEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGS----TIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~----~i~aD~vi~a~G~~p~~~ 311 (489)
.+..+ ++ .|.+.+++ ++.+|.+|+|+|.+|+.+
T Consensus 80 ~i~~~--~~--~V~~~~g~~~~~~~~~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 80 KIDAK--SS--MVYYTKPDGSMAEEEYDYVIVGIGAHLATE 116 (409)
T ss_dssp EEETT--TT--EEEEECTTSCEEEEECSEEEECCCCEECGG
T ss_pred EEeCC--CC--EEEEccCCcccceeeCCEEEECCCCCcCcc
Confidence 99743 22 35566664 399999999999988754
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-06 Score=85.05 Aligned_cols=99 Identities=16% Similarity=0.255 Sum_probs=76.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEcc----CCcc------------hhh----hhCHHHHHHHHHHHHhcCcEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFP----ENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~----~~~~------------l~~----~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
.+++|||+|+.|+.+|..|++.|.+|+++++ ...+ .+. .....+...+.+.+++.|++++
T Consensus 9 ~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 88 (333)
T 1vdc_A 9 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTIF 88 (333)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCEEE
Confidence 5799999999999999999999999999998 2211 010 1234677778888889999999
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
. ++ ++.+...++ .+ .|.+ +|+++.+|.+|+|+|.+|...
T Consensus 89 ~-~~-v~~i~~~~~-~~-~v~~-~~~~~~~~~vv~A~G~~~~~~ 127 (333)
T 1vdc_A 89 T-ET-VTKVDFSSK-PF-KLFT-DSKAILADAVILAIGAVAKRL 127 (333)
T ss_dssp C-CC-CCEEECSSS-SE-EEEC-SSEEEEEEEEEECCCEEECCC
T ss_pred E-eE-EEEEEEcCC-EE-EEEE-CCcEEEcCEEEECCCCCcCCC
Confidence 8 76 888875432 22 4566 777899999999999987643
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.35 E-value=5.9e-07 Score=89.47 Aligned_cols=120 Identities=16% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC---CCCCCC-Cccc---cC-----C----------------
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA---PYERPA-LTKG---YL-----F---------------- 102 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~---~y~~~~-l~~~---~~-----~---------------- 102 (489)
++||+|||||++|+++|..|++.|. +|+|+|+.+.. .-.+.. ++.. .+ .
T Consensus 2 ~~dV~IvGaG~aGl~~A~~L~~~G~---~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~ 78 (394)
T 1k0i_A 2 KTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIA 78 (394)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEE
T ss_pred CccEEEECCCHHHHHHHHHHHHCCC---CEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEE
Confidence 4799999999999999999999987 69999987631 000000 0000 00 0
Q ss_pred CCCCCCCCCCCCcccc-CCCC--------CCCChhHHHHCCcEEEeCCcEEEEeCCC---CEEEe-CCCe--EEeeCcEE
Q 011267 103 PLDKKPARLPGFHTCV-GSGG--------ERQTPEWYKEKGIEMIYQDPVTSIDIEK---QTLIT-NSGK--LLKYGSLI 167 (489)
Q Consensus 103 ~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~~~i~~~~~~~V~~id~~~---~~v~~-~~g~--~i~yd~lv 167 (489)
.... ...+ .+.... +... ...+.+.+.+.+++++.+++|+++..+. ..|++ .+|. ++.+|.||
T Consensus 79 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV 156 (394)
T 1k0i_A 79 FAGQ-RRRI-DLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIA 156 (394)
T ss_dssp ETTE-EEEE-CHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEE
T ss_pred ECCc-eEEe-ccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEE
Confidence 0000 0000 000000 0000 0011222345699999999999997642 36666 6887 79999999
Q ss_pred ecCCCCCC
Q 011267 168 VATGCTAS 175 (489)
Q Consensus 168 lATG~~~~ 175 (489)
.|+|....
T Consensus 157 ~AdG~~S~ 164 (394)
T 1k0i_A 157 GCDGFHGI 164 (394)
T ss_dssp ECCCTTCS
T ss_pred ECCCCCcH
Confidence 99998754
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=2e-06 Score=82.51 Aligned_cols=99 Identities=16% Similarity=0.312 Sum_probs=76.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc---c--------hhh----hhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH---L--------LQR----LFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~---~--------l~~----~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
+++|||+|+.|+.+|..|++.|. +|+++++... + .+. .....+.+.+.+.+++.|++++. .+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~--~~ 80 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGGVKNAVLFEKGMPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM--TA 80 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCSSEEEECSSSTTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC--SC
T ss_pred eEEEECccHHHHHHHHHHHHCCCCcEEEEcCCCCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE--EE
Confidence 68999999999999999999999 9999998521 0 111 11246777788888899999987 68
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
|+.+...+ +. ..+.+.+|+++.+|.+|+|+|..|...
T Consensus 81 v~~i~~~~-~~-~~v~~~~g~~~~~~~vv~AtG~~~~~~ 117 (311)
T 2q0l_A 81 VQRVSKKD-SH-FVILAEDGKTFEAKSVIIATGGSPKRT 117 (311)
T ss_dssp EEEEEEET-TE-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred EEEEEEcC-CE-EEEEEcCCCEEECCEEEECCCCCCCCC
Confidence 88887543 22 346678888999999999999887643
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.34 E-value=5.4e-07 Score=88.96 Aligned_cols=99 Identities=23% Similarity=0.318 Sum_probs=73.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch------hhh----hC-HHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL------QRL----FT-PSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l------~~~----~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.+.+++|||+|+.|+.+|..|++.| +|+++++.+.+. +.. .+ .++.....+.+++.||+++. ++.|+
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~-g~~v~ 84 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRL-AEEAK 84 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEEC-SCCEE
T ss_pred CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEE-CCEEE
Confidence 4789999999999999999999999 999999886421 110 01 11112234567788999999 99999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
.+... .+ .|. .+|+++.+|.+|+|||.+|...
T Consensus 85 ~id~~--~~--~V~-~~g~~~~~d~lViATGs~p~~p 116 (367)
T 1xhc_A 85 LIDRG--RK--VVI-TEKGEVPYDTLVLATGARAREP 116 (367)
T ss_dssp EEETT--TT--EEE-ESSCEEECSEEEECCCEEECCC
T ss_pred EEECC--CC--EEE-ECCcEEECCEEEECCCCCCCCC
Confidence 99743 23 344 6778899999999999988743
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.34 E-value=4e-06 Score=83.06 Aligned_cols=98 Identities=20% Similarity=0.295 Sum_probs=72.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------h---------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------R--------------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------~--------------------------------- 245 (489)
.|+|||||+.|+-+|..|++.|.+|+++++.+.+.. +
T Consensus 6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII 85 (397)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence 589999999999999999999999999997632200 0
Q ss_pred ------------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CC--cEEEcCEEEEccCCCC
Q 011267 246 ------------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DG--STIDADTIVIGIGAKP 308 (489)
Q Consensus 246 ------------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~aD~vi~a~G~~p 308 (489)
.+ -..+...+.+..++.|+++++ +++++.+..+ ++.+..+... ++ .++.||.||-|.|...
T Consensus 86 ~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~-~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S 162 (397)
T 3oz2_A 86 LQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWV-KSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES 162 (397)
T ss_dssp EECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEES-SCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred ccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEee-eeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence 00 123456677778889999999 9999998754 4555444432 33 3689999999999643
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.32 E-value=3.2e-06 Score=84.26 Aligned_cols=100 Identities=15% Similarity=0.133 Sum_probs=79.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------hh--------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------QR-------------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------~~-------------------------- 245 (489)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. ..
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~ 86 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL 86 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence 479999999999999999999999999999864320 00
Q ss_pred -----------------hhCHHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCCCCcEE-EEEeCCCcEEEcCEEEEccCC
Q 011267 246 -----------------LFTPSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 246 -----------------~~~~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~~~~v~-~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.....+.+.+.+.+++. |+++++ +++|++++.+++ .+. .|++.+|+++.+|.||.|+|.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~-~~~v~~i~~~~~-~v~g~v~~~~g~~~~ad~vV~AdG~ 164 (399)
T 2x3n_A 87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLF-ETRIEAVQRDER-HAIDQVRLNDGRVLRPRVVVGADGI 164 (399)
T ss_dssp EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEEC-SCCEEEEEECTT-SCEEEEEETTSCEEEEEEEEECCCT
T ss_pred EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEc-CCEEEEEEEcCC-ceEEEEEECCCCEEECCEEEECCCC
Confidence 00124566677777777 999999 999999986544 442 578889989999999999998
Q ss_pred CCC
Q 011267 307 KPT 309 (489)
Q Consensus 307 ~p~ 309 (489)
.+.
T Consensus 165 ~s~ 167 (399)
T 2x3n_A 165 ASY 167 (399)
T ss_dssp TCH
T ss_pred ChH
Confidence 764
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.4e-06 Score=88.33 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=80.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--cch-----------hhhhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~--~~l-----------~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
..+++|||||+.|+.+|..|++.|.+|+++++.. .+. +....+.+...+.+.+++.|++++. +++|
T Consensus 212 ~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~-~~~v 290 (521)
T 1hyu_A 212 AYDVLIVGSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVID-SQSA 290 (521)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEEC-SCCE
T ss_pred cccEEEECCcHHHHHHHHHHHhCCCeEEEEECCCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEc-CCEE
Confidence 4579999999999999999999999999997531 111 0112356778888889999999999 9999
Q ss_pred EEEEeCCC-CcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 274 KNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 274 ~~i~~~~~-~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
+.+....+ +....|.+++|+++.+|.||+|+|.+|..
T Consensus 291 ~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~ 328 (521)
T 1hyu_A 291 SKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRN 328 (521)
T ss_dssp EEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECC
T ss_pred EEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCC
Confidence 99974321 22346788899899999999999988753
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.2e-07 Score=87.25 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=35.4
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+.+.|++++.+++|+++..+.. .+.+.+|. +.+|++|+|+|...
T Consensus 158 ~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~-~~a~~vV~a~G~~s 204 (372)
T 2uzz_A 158 LAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE-YQAKKAIVCAGTWV 204 (372)
T ss_dssp HHHHTTCEEECSCCEEEEEECSSSEEEEESSCE-EEEEEEEECCGGGG
T ss_pred HHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe-EEcCEEEEcCCccH
Confidence 34567999999999999986543 56666665 99999999999754
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=87.99 Aligned_cols=102 Identities=24% Similarity=0.426 Sum_probs=76.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcch------hh-hhC-----HHHHHHHHHHHHhcCcEEEEcCce
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL------QR-LFT-----PSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l------~~-~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..+++|||+|+.|+.+|..|++.|. +|+++++.+.+. .. .+. ..+.....+.+++.||+++. ++.
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~ 82 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLG-GTQ 82 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEEC-SCC
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEe-CCE
Confidence 4689999999999999999999998 799999875421 10 000 01111123567788999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
|+.+... ++ .|.+++|+++.+|.+|+|+|.+|....+
T Consensus 83 v~~i~~~--~~--~v~~~~g~~~~~d~lviAtG~~p~~~~i 119 (431)
T 1q1r_A 83 VTAINRD--RQ--QVILSDGRALDYDRLVLATGGRPRPLPV 119 (431)
T ss_dssp EEEEETT--TT--EEEETTSCEEECSEEEECCCEEECCCGG
T ss_pred EEEEECC--CC--EEEECCCCEEECCEEEEcCCCCccCCCC
Confidence 9999843 22 4777888899999999999999875543
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=2.2e-06 Score=85.94 Aligned_cols=99 Identities=24% Similarity=0.427 Sum_probs=75.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCc--EEEEccCCcchhh--hhCHHHH---------HHHHHHHHhcCcEEEEcCceEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHLLQR--LFTPSLA---------QRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~--V~lv~~~~~~l~~--~~~~~~~---------~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
++++|||+|+.|+.+|..|++.|.+ |+++++.+.+.-. .+...+. ....+.+++.|++++. +++++
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~-~~~v~ 81 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLT-GPEVT 81 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEE-SCCEE
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEe-CCEEE
Confidence 4799999999999999999999987 9999987643110 0111111 1223456778999999 99999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
.+... .+ .|.+.+|+++.+|.+|+|||.+|...
T Consensus 82 ~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~~ 114 (410)
T 3ef6_A 82 ALDVQ--TR--TISLDDGTTLSADAIVIATGSRARTM 114 (410)
T ss_dssp EEETT--TT--EEEETTSCEEECSEEEECCCEEECCC
T ss_pred EEECC--CC--EEEECCCCEEECCEEEEccCCcccCC
Confidence 99843 22 57788999999999999999987643
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=90.23 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+..+...+.+.+++.|+++++ +++|+++..+ ++++.+|++.+ | .++.||.||.|+|.... .+++..|.
T Consensus 169 ~~~l~~~L~~~a~~~G~~i~~-~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~-~l~~~~g~ 241 (561)
T 3da1_A 169 DARLTLEIMKEAVARGAVALN-YMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVD-TLREKDRS 241 (561)
T ss_dssp HHHHHHHHHHHHHHTTCEEEE-SEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHH-HHHHTTTC
T ss_pred HHHHHHHHHHHHHHcCCEEEc-CCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcchH-HHHHhcCC
Confidence 346677778888899999999 9999999864 56666777654 3 47999999999998653 44444443
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-06 Score=80.99 Aligned_cols=100 Identities=15% Similarity=0.184 Sum_probs=76.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc--------ch------------hhhhCHHHHHHHHHHHHhcCcEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH--------LL------------QRLFTPSLAQRYEQLYQQNGVKFV 267 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~--------~l------------~~~~~~~~~~~l~~~l~~~Gv~~~ 267 (489)
..|+|||+|+.|+.+|..++++|.+|+++++... +. .....+++.+.+.+.+++.++++.
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~~ 84 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTII 84 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEEE
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEEE
Confidence 4699999999999999999999999999987531 00 011235677888888999999987
Q ss_pred EcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 268 ~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
. ..+.......+. ..+.+.+++++.+|.+|+|||.+|...
T Consensus 85 ~--~~v~~~~~~~~~--~~~~~~~~~~~~~~~liiATG~~~~~~ 124 (314)
T 4a5l_A 85 T--ETIDHVDFSTQP--FKLFTEEGKEVLTKSVIIATGATAKRM 124 (314)
T ss_dssp C--CCEEEEECSSSS--EEEEETTCCEEEEEEEEECCCEEECCC
T ss_pred E--eEEEEeecCCCc--eEEEECCCeEEEEeEEEEccccccccc
Confidence 6 456665533322 356778888999999999999988643
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=86.66 Aligned_cols=97 Identities=20% Similarity=0.334 Sum_probs=75.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||+.|+.+|..|++.|. +|+++++.+... + . .+ + ..+ .....+.
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~---~-~~-~-----~~~-----------~~~l~~~ 196 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLM---S---R-AA-P-----ATL-----------ADFVARY 196 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---T---T-TS-C-----HHH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhCCC---EEEEEEeCCccc---c---c-cc-C-----HHH-----------HHHHHHH
Confidence 35799999999999999999999875 799999876421 0 0 00 0 000 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++.+++|.+++ ++ .+.+.+|+++++|.+|+|+|..|.
T Consensus 197 l~~~GV~i~~~~~v~~i~-~~-~v~~~~g~~i~~D~vi~a~G~~p~ 240 (408)
T 2gqw_A 197 HAAQGVDLRFERSVTGSV-DG-VVLLDDGTRIAADMVVVGIGVLAN 240 (408)
T ss_dssp HHHTTCEEEESCCEEEEE-TT-EEEETTSCEEECSEEEECSCEEEC
T ss_pred HHHcCcEEEeCCEEEEEE-CC-EEEECCCCEEEcCEEEECcCCCcc
Confidence 778999999999999998 44 888899999999999999998765
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.5e-07 Score=83.61 Aligned_cols=37 Identities=22% Similarity=0.261 Sum_probs=33.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
|..||+|||||||||+||..|+++|+ +|+|+|+.+.+
T Consensus 1 Mt~dV~IIGaGpaGL~aA~~La~~G~---~V~v~Ek~~~~ 37 (336)
T 3kkj_A 1 MTVPIAIIGTGIAGLSAAQALTAAGH---QVHLFDKSRGS 37 (336)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCCCC
Confidence 34799999999999999999999988 69999998764
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=3.4e-06 Score=81.24 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=75.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC---cc--------hhh----hhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~---~~--------l~~----~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
.+++|||+|+.|+.+|..|++.|.+|+++++.. .+ .+. ...+.+.+.+.+.+++.|++++. ++
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~- 83 (320)
T 1trb_A 6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF-DH- 83 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC-CC-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEccCCCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE-ee-
Confidence 579999999999999999999999999998641 00 011 12356777788888899999998 75
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.+...+ +.+ .+ +.+++++.+|.+|+|+|..|...
T Consensus 84 v~~i~~~~-~~~-~v-~~~~~~~~~~~lv~AtG~~~~~~ 119 (320)
T 1trb_A 84 INKVDLQN-RPF-RL-NGDNGEYTCDALIIATGASARYL 119 (320)
T ss_dssp EEEEECSS-SSE-EE-EESSCEEEEEEEEECCCEEECCC
T ss_pred eeEEEecC-CEE-EE-EeCCCEEEcCEEEECCCCCcCCC
Confidence 88887543 332 34 56778899999999999987643
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.26 E-value=2.7e-06 Score=82.68 Aligned_cols=100 Identities=19% Similarity=0.293 Sum_probs=77.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC---cc--------hhh----hhCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN---HL--------LQR----LFTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~---~~--------l~~----~~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
..+++|||+|+.|+.+|..|++.|.+|+++++.. .+ .+. ...+.+.+.+.+.+++.|++++. ++
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~-~~ 92 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQLAPLVFEGTSFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRM-ED 92 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCCEEECCSSCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEEEC-CC
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEEEE-ee
Confidence 4679999999999999999999999999998541 00 111 11256777788888889999998 76
Q ss_pred eEEEEEeCCCCcEEEE-EeCCCcEEEcCEEEEccCCCCCCc
Q 011267 272 SIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v-~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.+.. ++.. .| .+.+|+++.+|.+|+|+|..|...
T Consensus 93 -v~~i~~--~~~~-~v~~~~~g~~~~~d~lviAtG~~~~~~ 129 (335)
T 2a87_A 93 -VESVSL--HGPL-KSVVTADGQTHRARAVILAMGAAARYL 129 (335)
T ss_dssp -EEEEEC--SSSS-EEEEETTSCEEEEEEEEECCCEEECCC
T ss_pred -EEEEEe--CCcE-EEEEeCCCCEEEeCEEEECCCCCccCC
Confidence 888875 2222 35 677888999999999999987643
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.6e-06 Score=86.17 Aligned_cols=98 Identities=13% Similarity=0.174 Sum_probs=74.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||+|+.|+.+|..|++.|. +|+++++.+...-. .+ ...+ .....+.+
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~~~~-------~~------~~~~-----------~~~l~~~l 197 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSSGGY---QLDVVAPCEQVMPG-------LL------HPAA-----------AKAVQAGL 197 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSSTT-------TS------CHHH-----------HHHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC---eEEEEecCcchhhc-------cc------CHHH-----------HHHHHHHH
Confidence 6789999999999999999999876 79999987542100 00 0000 01234566
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++.|++++.+++|.+++.+.. .+.+.+|+++.+|.+|+|+|..|.
T Consensus 198 ~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~ 244 (384)
T 2v3a_A 198 EGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR 244 (384)
T ss_dssp HTTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred HHcCCEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence 778999999999999976443 677888989999999999998775
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7e-06 Score=85.43 Aligned_cols=100 Identities=17% Similarity=0.295 Sum_probs=77.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-c-----------------hh----------hh------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-L-----------------LQ----------RL------------ 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~-----------------l~----------~~------------ 246 (489)
...|+|||||..|+++|..+++.|.+|.++++... + .. ..
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~ 106 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLN 106 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEES
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeecc
Confidence 35799999999999999999999999999997631 0 00 00
Q ss_pred -------------hC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 247 -------------FT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 247 -------------~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+ ..+...+.+.+++ .|++++ ++.|+++.. +++++.+|.+.+|+++.||.||+|+|..++
T Consensus 107 ~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~--~~~Vt~L~~-e~g~V~GV~t~dG~~i~AdaVVLATG~~s~ 181 (637)
T 2zxi_A 107 TRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK--QEEVVDIIV-KNNQVVGVRTNLGVEYKTKAVVVTTGTFLN 181 (637)
T ss_dssp TTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE--ESCEEEEEE-SSSBEEEEEETTSCEEECSEEEECCTTCBT
T ss_pred cccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE--EeEEEEEEe-cCCEEEEEEECCCcEEEeCEEEEccCCCcc
Confidence 00 1345666777777 599994 579999875 356777899999999999999999998754
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=3.3e-06 Score=83.53 Aligned_cols=64 Identities=17% Similarity=0.306 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
.+...+.+.+++.|+++++ ++.|+++... ++.+ .|.+.+| ++.||.||+|+|.... .++..+++
T Consensus 165 ~~~~~l~~~~~~~g~~i~~-~~~v~~i~~~-~~~~-~v~~~~g-~~~a~~vV~A~G~~s~-~l~~~~~~ 228 (382)
T 1ryi_A 165 FVCKAYVKAAKMLGAEIFE-HTPVLHVERD-GEAL-FIKTPSG-DVWANHVVVASGVWSG-MFFKQLGL 228 (382)
T ss_dssp HHHHHHHHHHHHTTCEEET-TCCCCEEECS-SSSE-EEEETTE-EEEEEEEEECCGGGTH-HHHHHTTC
T ss_pred HHHHHHHHHHHHCCCEEEc-CCcEEEEEEE-CCEE-EEEcCCc-eEEcCEEEECCChhHH-HHHHhcCC
Confidence 4556677888889999999 9999999854 3455 6777777 8999999999998754 45555543
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.24 E-value=2.4e-06 Score=85.73 Aligned_cols=100 Identities=26% Similarity=0.398 Sum_probs=76.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc--EEEEccCCcc------hh-hhh-----CHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLD--TTIIFPENHL------LQ-RLF-----TPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~--V~lv~~~~~~------l~-~~~-----~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..+++|||+|+.|+.+|..|++.|.+ |+++++.+.+ +. ..+ ...+.....+.+++.|++++. +++
T Consensus 9 ~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 87 (415)
T 3lxd_A 9 RADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKL-GAE 87 (415)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEE-TCC
T ss_pred CCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEe-CCE
Confidence 46899999999999999999999987 9999987542 11 111 112222345667789999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
++.+... .+ .|.+.+|+++.+|.+|+|||.+|...
T Consensus 88 v~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~~~~~ 122 (415)
T 3lxd_A 88 VVSLDPA--AH--TVKLGDGSAIEYGKLIWATGGDPRRL 122 (415)
T ss_dssp EEEEETT--TT--EEEETTSCEEEEEEEEECCCEECCCC
T ss_pred EEEEECC--CC--EEEECCCCEEEeeEEEEccCCccCCC
Confidence 9999743 33 47788999999999999999988754
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=3.7e-06 Score=85.29 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=76.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcch----hh---------------------------------h
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL----QR---------------------------------L 246 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l----~~---------------------------------~ 246 (489)
...+|+|||+|+.|+.+|..|++.|. +|+++++.+.+. .. .
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~ 84 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 84 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCch
Confidence 35789999999999999999999999 999999874220 00 0
Q ss_pred --------------h--------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--
Q 011267 247 --------------F--------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS-- 293 (489)
Q Consensus 247 --------------~--------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~-- 293 (489)
+ ...+.+++.+..++.++.+++ +++|+++...+++ ..|++.+ |+
T Consensus 85 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~-~t~V~~v~~~~~~--~~V~~~~~~~G~~~ 161 (447)
T 2gv8_A 85 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKL-ATDVLDIEKKDGS--WVVTYKGTKAGSPI 161 (447)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEEC-SEEEEEEEEETTE--EEEEEEESSTTCCE
T ss_pred hhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEe-CCEEEEEEeCCCe--EEEEEeecCCCCee
Confidence 0 124566777777777888999 9999999864332 2455554 66
Q ss_pred -EEEcCEEEEccCC--CCCC
Q 011267 294 -TIDADTIVIGIGA--KPTV 310 (489)
Q Consensus 294 -~i~aD~vi~a~G~--~p~~ 310 (489)
++.+|.||+|+|. .|+.
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~ 181 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYI 181 (447)
T ss_dssp EEEEESEEEECCCSSSSBCB
T ss_pred EEEEeCEEEECCCCCCCCCC
Confidence 7999999999998 6654
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.23 E-value=5.1e-06 Score=82.63 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=77.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc------------------hhh------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL------------------LQR------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~------------------l~~------------------------ 245 (489)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.. +.+
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 82 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence 36999999999999999999999999999987531 000
Q ss_pred --h--------------hC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccC
Q 011267 246 --L--------------FT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIG 305 (489)
Q Consensus 246 --~--------------~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G 305 (489)
. ++ ..+.+.+.+.+.+.|+++++ +++|+++..++++.+ .|++ .+|+ ++.+|.||.|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~-~~~v~~i~~~~~~~~-~v~~~~~g~~~~~~a~~vV~AdG 160 (394)
T 1k0i_A 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVY-QAAEVRLHDLQGERP-YVTFERDGERLRLDCDYIAGCDG 160 (394)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEES-SCEEEEEECTTSSSC-EEEEEETTEEEEEECSEEEECCC
T ss_pred eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEe-ceeEEEEEEecCCce-EEEEecCCcEEEEEeCEEEECCC
Confidence 0 01 23455666777778999999 999999985433333 4666 6886 799999999999
Q ss_pred CCCCC
Q 011267 306 AKPTV 310 (489)
Q Consensus 306 ~~p~~ 310 (489)
.....
T Consensus 161 ~~S~v 165 (394)
T 1k0i_A 161 FHGIS 165 (394)
T ss_dssp TTCST
T ss_pred CCcHH
Confidence 97754
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.22 E-value=7e-06 Score=85.73 Aligned_cols=99 Identities=19% Similarity=0.278 Sum_probs=77.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-c---------------------------hhh--------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-L---------------------------LQR-------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~---------------------------l~~-------------- 245 (489)
..|+|||||..|+++|..+++.|.+|.++++... + +..
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~ 108 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA 108 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence 4799999999999999999999999999997631 0 000
Q ss_pred -----------hhC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 246 -----------LFT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 -----------~~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+ ..+...+.+.+++ .|++++ ++.|+++.. +++++.+|.+.+|.++.||.||+|+|..+.
T Consensus 109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~--~~~V~~L~~-e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~ 182 (651)
T 3ces_A 109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF--QQAVEDLIV-ENDRVVGAVTQMGLKFRAKAVVLTVGTFLD 182 (651)
T ss_dssp TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE--ECCEEEEEE-SSSBEEEEEETTSEEEEEEEEEECCSTTTC
T ss_pred ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE--EEEEEEEEe-cCCEEEEEEECCCCEEECCEEEEcCCCCcc
Confidence 001 1355667777877 699994 579999975 356777899999988999999999998754
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=85.84 Aligned_cols=98 Identities=26% Similarity=0.468 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcc------hh-hhh-----CHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL------LQ-RLF-----TPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~------l~-~~~-----~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++++|||+|+.|+.+|..|++.|. +|+++++.+.+ +. ..+ ...+.....+.+++.|++++. +++
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~--~~v 79 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS--DRM 79 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC--CCE
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE--EEE
Confidence 689999999999999999999998 89999987632 11 000 111222344667788999987 889
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
+.+... .+ .+.+.+|+++.+|.+|+|||.+|...
T Consensus 80 ~~id~~--~~--~v~~~~g~~~~~d~lvlAtG~~p~~~ 113 (404)
T 3fg2_P 80 VSIDRE--GR--KLLLASGTAIEYGHLVLATGARNRML 113 (404)
T ss_dssp EEEETT--TT--EEEESSSCEEECSEEEECCCEEECCC
T ss_pred EEEECC--CC--EEEECCCCEEECCEEEEeeCCCccCC
Confidence 999743 33 47788999999999999999987643
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.9e-06 Score=87.73 Aligned_cols=99 Identities=21% Similarity=0.277 Sum_probs=75.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 165 ~~~~vvVvGgG~~g~e~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 216 (463)
T 2r9z_A 165 QPKRVAIIGAGYIGIELAGLLRSFGS---EVTVVALEDRLL---FQFDP-----------LL-----------SATLAEN 216 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHhcCC---EEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35689999999999999999999876 799999875421 00000 00 0123566
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--CEEEeCCCe-EEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGK-LLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~-~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.+++|.+++.+. ..+.+.+|+ ++.+|.+++|+|..|..
T Consensus 217 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 266 (463)
T 2r9z_A 217 MHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNT 266 (463)
T ss_dssp HHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESC
T ss_pred HHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCC
Confidence 788999999999999998643 467788998 89999999999988763
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=2.1e-06 Score=87.23 Aligned_cols=99 Identities=14% Similarity=0.119 Sum_probs=75.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+.. .+ .....+.
T Consensus 166 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 217 (450)
T 1ges_A 166 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV 217 (450)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCC---EEEEEEeCCchh---hhhhH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999875421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.+++|.+++.+. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus 218 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~ 267 (450)
T 1ges_A 218 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAN 267 (450)
T ss_dssp HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 778899999999999998643 36788899889999999999988763
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=1.4e-06 Score=88.67 Aligned_cols=97 Identities=22% Similarity=0.305 Sum_probs=72.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||++|+.+|..|++.|. +|+|+++.+... |.+.. .+ .....+.
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 221 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTYDS-----------EL-----------TAPVAES 221 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999976 799999876421 10000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeC--CC--eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITN--SG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~--~g--~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++++++|.+++. .. +.+. +| .++.+|.+++|||.+|..
T Consensus 222 l~~~gv~i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~ 270 (458)
T 1lvl_A 222 LKKLGIALHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRT 270 (458)
T ss_dssp HHHHTCEEETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECC
T ss_pred HHHCCCEEEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCC
Confidence 7788999999999999997 43 4333 56 679999999999988763
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=4.7e-06 Score=83.10 Aligned_cols=100 Identities=17% Similarity=0.278 Sum_probs=73.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----hhCHHHHH----------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQ---------------------------- 253 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----~~~~~~~~---------------------------- 253 (489)
..+|+|||||+.|+.+|..|++.|.+|+++++.+..... .+.+...+
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~ 84 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE 84 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence 468999999999999999999999999999987643110 01222111
Q ss_pred ---------------HHHHHHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 254 ---------------RYEQLYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 254 ---------------~l~~~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+.|.+ .|+++++ +++|++++.+++ .+ .|++.+|+++.+|.||.|.|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~-~~~v~~i~~~~~-~v-~v~~~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHT-SKCLVGLSQDSE-TV-QMRFSDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEEEEECCCCEEEHHHHHHHHHHHHCSTTEET-TCCEEEEEECSS-CE-EEEETTSCEEEESEEEECCCTTCH
T ss_pred ccccccCcccccCHHHHHHHHHHhCCCcEEEc-CCEEEEEEecCC-EE-EEEECCCCEEECCEEEECCCcchh
Confidence 12222222 3789999 999999986544 34 588899999999999999998764
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=3e-06 Score=85.95 Aligned_cols=98 Identities=17% Similarity=0.250 Sum_probs=73.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||++|+.+|..|++.|. +|+++++.+...-. ++ + ..+ .....+.
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~~g~---~Vtlv~~~~~~l~~-------~~-~-----~~~-----------~~~l~~~ 200 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRPLGV-------YL-D-----KEF-----------TDVLTEE 200 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TC-C-----HHH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---eEEEEecCcccccc-------cC-C-----HHH-----------HHHHHHH
Confidence 46899999999999999999999875 79999987642100 00 0 000 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++.+++|.+++.+.+ .+.+ ++.++.+|.+|+|+|..|.
T Consensus 201 l~~~gv~i~~~~~v~~i~~~~~v~~v~~-~~~~i~~d~vi~a~G~~p~ 247 (447)
T 1nhp_A 201 MEANNITIATGETVERYEGDGRVQKVVT-DKNAYDADLVVVAVGVRPN 247 (447)
T ss_dssp HHTTTEEEEESCCEEEEECSSBCCEEEE-SSCEEECSEEEECSCEEES
T ss_pred HHhCCCEEEcCCEEEEEEccCcEEEEEE-CCCEEECCEEEECcCCCCC
Confidence 6788999999999999987643 3555 5667999999999998875
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.8e-06 Score=86.47 Aligned_cols=103 Identities=14% Similarity=0.159 Sum_probs=77.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC-----CcEEEEccCCcch--h------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK-----LDTTIIFPENHLL--Q------------------------------------ 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g-----~~V~lv~~~~~~l--~------------------------------------ 244 (489)
.+|+|||+|+.|+.+|..|++.| .+|+++++.+.+. +
T Consensus 31 ~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l~~~ 110 (463)
T 3s5w_A 31 HDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYLHKH 110 (463)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHHHHT
T ss_pred CCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhhhhc
Confidence 37999999999999999999999 9999999876311 0
Q ss_pred ----------hh--hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcE--EEEEeCCCc----EEEcCEEEEccC
Q 011267 245 ----------RL--FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRV--AAVKLEDGS----TIDADTIVIGIG 305 (489)
Q Consensus 245 ----------~~--~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v--~~v~~~~g~----~i~aD~vi~a~G 305 (489)
.. ....+.+++....++.|+++++ +++|++++..++ ++. ..|.+.+|+ ++.+|.||+|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~-~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlAtG 189 (463)
T 3s5w_A 111 DRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRY-GEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPG 189 (463)
T ss_dssp TCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEE-SEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEECCC
T ss_pred CceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEe-CCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEECCC
Confidence 00 0134555666666777999999 999999986421 232 256666665 899999999999
Q ss_pred CCCCCc
Q 011267 306 AKPTVS 311 (489)
Q Consensus 306 ~~p~~~ 311 (489)
..|..+
T Consensus 190 ~~p~~p 195 (463)
T 3s5w_A 190 GTPRIP 195 (463)
T ss_dssp CEECCC
T ss_pred CCCCCc
Confidence 988754
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-05 Score=82.23 Aligned_cols=99 Identities=14% Similarity=0.176 Sum_probs=75.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------hh------------hh----------------CHHH
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL--------QR------------LF----------------TPSL 251 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l--------~~------------~~----------------~~~~ 251 (489)
.+|+|||+|+.|+.+|..|++.|.+|+++++.+.+. +. .+ .+++
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i 96 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 96 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence 479999999999999999999999999999875320 00 00 1345
Q ss_pred HHHHHHHHHhcC--cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 252 AQRYEQLYQQNG--VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 252 ~~~l~~~l~~~G--v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.+++....++.+ +++++ +++|+++..++++....|.+++|+++.||.||+|+|..
T Consensus 97 ~~yl~~~~~~~~l~~~i~~-~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 97 LRYINFVADKFDLRSGITF-HTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 153 (542)
T ss_dssp HHHHHHHHHHTTGGGGEEC-SCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCCceEEc-CcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCC
Confidence 556666666665 67888 99999998765544456888899899999999999963
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=98.18 E-value=6.8e-06 Score=78.72 Aligned_cols=99 Identities=17% Similarity=0.244 Sum_probs=74.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEE-EccCCcc------------hhh----hhCHHHHHHHHHHHHhcCcEEEEc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTI-IFPENHL------------LQR----LFTPSLAQRYEQLYQQNGVKFVKV 269 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~l-v~~~~~~------------l~~----~~~~~~~~~l~~~l~~~Gv~~~~~ 269 (489)
..+|+|||+|+.|+.+|..|++.|.+|++ +++. .+ .+. ....++...+.+.+++.|++++.
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~~-~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~- 81 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKG-MPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEM- 81 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHTCSCEEEECSS-STTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEEEC-
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCeEEEEeCC-CCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEEEE-
Confidence 45899999999999999999999999999 8873 21 111 11257788888999999999998
Q ss_pred CceEEEEEeCCC-CcEEEEEe-CCCcEEEcCEEEEccCCCCCCc
Q 011267 270 GASIKNLEAGSD-GRVAAVKL-EDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 270 ~~~v~~i~~~~~-~~v~~v~~-~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
+ ++.++ .+++ +.. .+.+ .++ ++.+|.+|+|+|..|+..
T Consensus 82 ~-~v~~i-~~~~~~~~-~v~~~~~~-~~~~d~lvlAtG~~~~~~ 121 (315)
T 3r9u_A 82 V-GVEQI-LKNSDGSF-TIKLEGGK-TELAKAVIVCTGSAPKKA 121 (315)
T ss_dssp C-CEEEE-EECTTSCE-EEEETTSC-EEEEEEEEECCCEEECCC
T ss_pred E-EEEEE-ecCCCCcE-EEEEecCC-EEEeCEEEEeeCCCCCCC
Confidence 7 88888 4431 222 3313 334 899999999999987643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=87.21 Aligned_cols=98 Identities=12% Similarity=0.219 Sum_probs=73.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+. ..+ .....+.+
T Consensus 169 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~-----------~~~-----------~~~l~~~l 220 (464)
T 2eq6_A 169 PKRLLVIGGGAVGLELGQVYRRLGA---EVTLIEYMPEIL---PQGD-----------PET-----------AALLRRAL 220 (464)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSC-----------HHH-----------HHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---eEEEEEcCCccc---cccC-----------HHH-----------HHHHHHHH
Confidence 4789999999999999999999875 799999875421 0000 000 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEEeC-C--Ce--EEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLITN-S--GK--LLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~~~-~--g~--~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++.+.. .+.+. + |+ ++.+|.+++|+|..|..
T Consensus 221 ~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~ 273 (464)
T 2eq6_A 221 EKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRT 273 (464)
T ss_dssp HHTTCEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESC
T ss_pred HhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCC
Confidence 788999999999999986543 45554 5 76 79999999999988763
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.9e-06 Score=85.22 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=72.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcch------hhhhCH------HHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLFTP------SLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l------~~~~~~------~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++++|||+|+.|+.+|..|++. +.+|+++++.+.+. +..... .+.....+.+++.|++++. +++|
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~-~~~V 81 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFNHTINELHEARYITEEELRRQKIQLLL-NREV 81 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC----------------CCCCHHHHHHTTEEEEC-SCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEE-CCEE
Confidence 5899999999999999999998 89999999887542 100111 1111144667889999999 9999
Q ss_pred EEEEeCCCCcEEEEE-eCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVK-LEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~-~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
+++... +..+ .+. ..+++++.+|.+|+|+|.+|...
T Consensus 82 ~~id~~-~~~v-~v~~~~~~~~~~~d~lviAtG~~p~~p 118 (452)
T 3oc4_A 82 VAMDVE-NQLI-AWTRKEEQQWYSYDKLILATGASQFST 118 (452)
T ss_dssp EEEETT-TTEE-EEEETTEEEEEECSEEEECCCCCBCCC
T ss_pred EEEECC-CCEE-EEEecCceEEEEcCEEEECCCcccCCC
Confidence 999843 2322 333 23456899999999999998754
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=5.3e-06 Score=83.83 Aligned_cols=95 Identities=15% Similarity=0.283 Sum_probs=74.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||+.|+.+|..+++.|. +|+|+++.+... + ..+. .+ .....+.+
T Consensus 147 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~ll---~--------~~d~---~~-----------~~~~~~~l 198 (437)
T 4eqs_A 147 VDKVLVVGAGYVSLEVLENLYERGL---HPTLIHRSDKIN---K--------LMDA---DM-----------NQPILDEL 198 (437)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSSCCS---T--------TSCG---GG-----------GHHHHHHH
T ss_pred CcEEEEECCccchhhhHHHHHhcCC---cceeeeeecccc---c--------cccc---hh-----------HHHHHHHh
Confidence 5689999999999999999999976 799999875421 0 0000 00 12345677
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
++.+++++++++|.+++. ..+.+.+|+++++|.+++|+|..|.
T Consensus 199 ~~~gV~i~~~~~v~~~~~--~~v~~~~g~~~~~D~vl~a~G~~Pn 241 (437)
T 4eqs_A 199 DKREIPYRLNEEINAING--NEITFKSGKVEHYDMIIEGVGTHPN 241 (437)
T ss_dssp HHTTCCEEESCCEEEEET--TEEEETTSCEEECSEEEECCCEEES
T ss_pred hccceEEEeccEEEEecC--CeeeecCCeEEeeeeEEEEeceecC
Confidence 889999999999998875 5688999999999999999998875
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=9.4e-06 Score=83.51 Aligned_cols=35 Identities=17% Similarity=0.459 Sum_probs=31.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+||+|||||++|+++|+.|+++|. +|+|+|++.
T Consensus 2 ~~~DVvIIGgGi~G~~~A~~La~~G~---~V~llE~~~ 36 (501)
T 2qcu_A 2 ETKDLIVIGGGINGAGIAADAAGRGL---SVLMLEAQD 36 (501)
T ss_dssp -CBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC---CEEEEECCC
Confidence 46899999999999999999999987 699999975
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.16 E-value=2.7e-06 Score=84.88 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=31.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+|+||||||+|+++|..|+++|+ +|+|+|+.+..
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~---~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGI---KVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CEEEEecCCCC
Confidence 479999999999999999999987 79999987654
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.3e-05 Score=83.69 Aligned_cols=101 Identities=18% Similarity=0.303 Sum_probs=77.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-c-----------------h------hh----------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-L-----------------L------QR---------------- 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~-~-----------------l------~~---------------- 245 (489)
....|+|||||..|+++|..+++.|.+|.++++... + + ..
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l 99 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML 99 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence 345899999999999999999999999999997631 0 0 00
Q ss_pred -------------hhC-HHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 246 -------------LFT-PSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 -------------~~~-~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+ ..+...+.+.+++ .|++++. ..|+.+..+ ++.+.+|.+.+|+++.||.||+|+|..++
T Consensus 100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~--~~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s~ 175 (641)
T 3cp8_A 100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ--DTVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFLN 175 (641)
T ss_dssp CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEE--CCEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCBT
T ss_pred ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEe--eEEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCCC
Confidence 011 1445666777777 4999965 589998743 56677788999999999999999998754
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.4e-06 Score=85.60 Aligned_cols=100 Identities=23% Similarity=0.395 Sum_probs=70.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcch------hhhh-----CHHHHHHHHHHH-HhcCcEEEEcCce
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLF-----TPSLAQRYEQLY-QQNGVKFVKVGAS 272 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l------~~~~-----~~~~~~~l~~~l-~~~Gv~~~~~~~~ 272 (489)
.++++|||+|+.|+.+|..|++. +.+|+++++.+.+. +..+ ...+.....+.+ ++.|+++++ +++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~-~~~ 81 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEGLSTPDKLMYYPPEVFIKKRGIDLHL-NAE 81 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC------------------------CTHHHHTTCEEET-TCE
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccCCCCCHHHhhhcCHHHHHHhcCcEEEe-cCE
Confidence 36899999999999999999988 78999999987431 1100 111122222333 678999999 999
Q ss_pred EEEEEeCCCCcEEEEEeCCC-cEEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKLEDG-STIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g-~~i~aD~vi~a~G~~p~~~ 311 (489)
|+.+... . ..+.+.++ .++.+|.+|+|||.+|...
T Consensus 82 v~~i~~~--~--~~v~~~~g~~~~~~d~lviAtG~~p~~p 117 (449)
T 3kd9_A 82 VIEVDTG--Y--VRVRENGGEKSYEWDYLVFANGASPQVP 117 (449)
T ss_dssp EEEECSS--E--EEEECSSSEEEEECSEEEECCCEEECCC
T ss_pred EEEEecC--C--CEEEECCceEEEEcCEEEECCCCCCCCC
Confidence 9998632 2 24666777 4799999999999988644
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=3.3e-06 Score=86.91 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=75.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.+
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~l 227 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKFDE-----------SV-----------INVLENDM 227 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred CCeEEEECChHHHHHHHHHHHHcCC---eEEEEecCCccC---cccch-----------hh-----------HHHHHHHH
Confidence 5799999999999999999999875 799999875421 10000 00 01235667
Q ss_pred HHCCcEEEeCCcEEEEeCCC---CEEEeCCCeE-EeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK---QTLITNSGKL-LKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~-i~yd~lvlATG~~~~~ 176 (489)
++.|++++++++|.+++.+. ..+.+.+|++ +.+|.+++|+|..|..
T Consensus 228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~ 277 (500)
T 1onf_A 228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDT 277 (500)
T ss_dssp HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTT
T ss_pred HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCC
Confidence 88999999999999998642 3678888987 9999999999998863
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.14 E-value=8.6e-06 Score=78.42 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=74.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc---c--------hhh---hhCHHHHHHHHHHHHhcCcEEEEcCce
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---L--------LQR---LFTPSLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~--------l~~---~~~~~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
..+++|||+|+.|+.+|..|++.|.+|+++++... + .+. .....+.+.+.+.+++.|++++. .+
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~ 93 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSGFSVAILDKAVAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREG--VE 93 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEET--CC
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEE--ee
Confidence 45799999999999999999999999999998521 0 111 11246667778888889999876 57
Q ss_pred EEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 273 IKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
++.+...++ .+ .|.+ +++++.+|.+|+|+|..|..
T Consensus 94 v~~i~~~~~-~~-~v~~-~~~~~~~~~li~AtG~~~~~ 128 (319)
T 3cty_A 94 VRSIKKTQG-GF-DIET-NDDTYHAKYVIITTGTTHKH 128 (319)
T ss_dssp EEEEEEETT-EE-EEEE-SSSEEEEEEEEECCCEEECC
T ss_pred EEEEEEeCC-EE-EEEE-CCCEEEeCEEEECCCCCccc
Confidence 888875432 22 3555 56689999999999988764
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.5e-06 Score=84.38 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCc-EEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGR-LCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~-V~li~~~~~~ 89 (489)
++.+||+|||||++|+++|..|++.|. + |+|+|+.+..
T Consensus 2 ~~~~dVvIVGaG~aGl~~A~~L~~~G~---~~v~v~E~~~~~ 40 (410)
T 3c96_A 2 SEPIDILIAGAGIGGLSCALALHQAGI---GKVTLLESSSEI 40 (410)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTC---SEEEEEESSSSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCC---CeEEEEECCCCc
Confidence 346899999999999999999999986 7 9999997653
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-06 Score=85.46 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=75.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 235 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHGLGS---ETHLVIRGETVL---RKFDE-----------CI-----------QNTITDH 235 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEeCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999876421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC----CEEEeCCC-eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK----QTLITNSG-KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~----~~v~~~~g-~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++++++|.+++.+. ..+.+.+| .++.+|.+|+|+|..|..
T Consensus 236 l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~ 287 (479)
T 2hqm_A 236 YVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL 287 (479)
T ss_dssp HHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred HHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence 778899999999999998642 36788889 789999999999988764
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.5e-07 Score=89.18 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=31.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~li~~~~ 87 (489)
..+||+|||||++|+++|++|++. |. +|+|||++.
T Consensus 35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~---~V~vlE~~~ 71 (405)
T 3c4n_A 35 EAFDIVVIGAGRMGAACAFYLRQLAPGR---SLLLVEEGG 71 (405)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHCTTS---CEEEECSSC
T ss_pred CcCCEEEECCcHHHHHHHHHHHhcCCCC---eEEEEeCCC
Confidence 458999999999999999999999 76 799999874
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1e-05 Score=82.14 Aligned_cols=100 Identities=20% Similarity=0.229 Sum_probs=78.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------------hh---------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------QR--------------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------------~~--------------------------- 245 (489)
.+|+|||||+.|+.+|..|++.|.+|+++++.+.+. ..
T Consensus 7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT 86 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence 579999999999999999999999999999865321 00
Q ss_pred ---------hhC-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCCCC
Q 011267 246 ---------LFT-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 ---------~~~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~ 309 (489)
.++ ..+.+.+.+.+++.|+++++ +++|+++..+ ++.+.+|++. +|+ ++.||.||.|+|....
T Consensus 87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~-~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~ 163 (453)
T 3atr_A 87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWD-LTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRS 163 (453)
T ss_dssp EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEES-SEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGCT
T ss_pred EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEe-CcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCchh
Confidence 000 24566777777889999999 9999999854 4565556554 675 7999999999998765
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.6e-06 Score=87.69 Aligned_cols=103 Identities=20% Similarity=0.270 Sum_probs=75.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc------hhhhh-----C--HHHHHHHHHHHHhcCcEEEEcC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL------LQRLF-----T--PSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~------l~~~~-----~--~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
..++|+|||||+.|+.+|..|++. +.+|+++++.+.+ ++..+ + ..+...+....++.|+++++ +
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~-~ 113 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRV-L 113 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEEC-S
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEE-C
Confidence 457899999999999999999998 8899999998763 11101 0 11223455666788999999 9
Q ss_pred ceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccCCCCCCc
Q 011267 271 ASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G~~p~~~ 311 (489)
+.|+++... ++.+ .+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 114 ~~V~~id~~-~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (588)
T 3ics_A 114 SEVVKINKE-EKTI-TIKNVTTNETYNEAYDVLILSPGAKPIVP 155 (588)
T ss_dssp EEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred CEEEEEECC-CCEE-EEeecCCCCEEEEeCCEEEECCCCCCCCC
Confidence 999999843 3333 3332 4565 789999999999988643
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-05 Score=82.95 Aligned_cols=101 Identities=20% Similarity=0.282 Sum_probs=80.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhC------CCcEEEEccCCcchhh------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW------KLDTTIIFPENHLLQR------------------------------------ 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~------g~~V~lv~~~~~~l~~------------------------------------ 245 (489)
..|+|||+|+.|+.+|..|++. |.+|+++++.+.+...
T Consensus 36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~ 115 (584)
T 2gmh_A 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG 115 (584)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence 4799999999999999999998 9999999976432100
Q ss_pred --------hh---C--------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC------C--
Q 011267 246 --------LF---T--------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED------G-- 292 (489)
Q Consensus 246 --------~~---~--------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~------g-- 292 (489)
.+ + ..+.+.+.+.+++.|+++++ ++.++++..++++.+.+|.+.+ |
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~-g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~ 194 (584)
T 2gmh_A 116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYP-GYAAAEILFHEDGSVKGIATNDVGIQKDGAP 194 (584)
T ss_dssp EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEET-TCCEEEEEECTTSSEEEEEECCEEECTTSCE
T ss_pred eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEc-CCEEEEEEEcCCCCEEEEEeCCccccCCCCc
Confidence 00 0 14556777888889999999 9999999876667777787763 3
Q ss_pred -------cEEEcCEEEEccCCCCC
Q 011267 293 -------STIDADTIVIGIGAKPT 309 (489)
Q Consensus 293 -------~~i~aD~vi~a~G~~p~ 309 (489)
.++.||.||.|.|....
T Consensus 195 ~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 195 KTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp EEEEECCCEEECSEEEECCCTTCH
T ss_pred ccccCCceEEECCEEEEeeCCCch
Confidence 68999999999999764
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.9e-06 Score=86.28 Aligned_cols=98 Identities=15% Similarity=0.291 Sum_probs=72.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... |.+.. .+ .....+.
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 220 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGFEK-----------QM-----------AAIIKKR 220 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999875 799999875421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeC---CCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN---SGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~---~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++.+++|.+++.+.. .+.+. ++.++.+|.+++|+|..|.
T Consensus 221 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 221 LKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp HHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred HHHCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 7788999999999999986543 34443 4567999999999998875
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=98.11 E-value=6.5e-06 Score=84.05 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=63.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc------hhhhhCH------HH-------HHHHHHHHHhcCcE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL------LQRLFTP------SL-------AQRYEQLYQQNGVK 265 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~------l~~~~~~------~~-------~~~l~~~l~~~Gv~ 265 (489)
.++|+|||+|+.|+.+|..|++. +.+|+++++.+.+ ++..+.. .+ ........++.|++
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 82 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSGEVSNIESLQATPYNVVRDPEFFRINKDVE 82 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC-------------------------------------------CE
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcCCCCchHHhccccchhccCHHHHhhhcCcE
Confidence 36899999999999999999998 8999999998763 1111111 11 12222223357999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccCCCCCCc
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G~~p~~~ 311 (489)
+++ +++|++++.. +..+ .+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 83 ~~~-~~~V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p 128 (472)
T 3iwa_A 83 ALV-ETRAHAIDRA-AHTV-EIENLRTGERRTLKYDKLVLALGSKANRP 128 (472)
T ss_dssp EEC-SEEEEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEE-CCEEEEEECC-CCEE-EEeecCCCCEEEEECCEEEEeCCCCcCCC
Confidence 999 9999999843 3332 3332 3465 799999999999988643
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=75.97 Aligned_cols=99 Identities=19% Similarity=0.217 Sum_probs=74.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc---ch--------h---hhhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH---LL--------Q---RLFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~---~l--------~---~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
-.|+|||+|+.|+.+|..|+++|.+|+++++... .+ + ....+++.........+.+..+.. +..+
T Consensus 7 yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 85 (312)
T 4gcm_A 7 FDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQY-GDIK 85 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEE-CCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccc-eeee
Confidence 3689999999999999999999999999987531 11 1 011356667777778888888888 7766
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
...... .. .+...+++++.+|.+|+|||.+|...
T Consensus 86 ~~~~~~-~~---~~~~~~~~~~~~d~liiAtGs~~~~~ 119 (312)
T 4gcm_A 86 SVEDKG-EY---KVINFGNKELTAKAVIIATGAEYKKI 119 (312)
T ss_dssp EEEECS-SC---EEEECSSCEEEEEEEEECCCEEECCC
T ss_pred eeeeee-cc---eeeccCCeEEEeceeEEcccCccCcC
Confidence 665532 22 34567788999999999999988643
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=2.6e-06 Score=88.55 Aligned_cols=44 Identities=20% Similarity=0.412 Sum_probs=35.4
Q ss_pred HHCCcEEEeCCcEEEEeCCC--C--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~--~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+.|++++.+ +|+.++.+. . .|.+.+|.++.+|.||.|+|....
T Consensus 176 ~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~ 223 (538)
T 2aqj_A 176 VERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGL 223 (538)
T ss_dssp HHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCC
T ss_pred HHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchh
Confidence 4569999998 899997642 2 577788888999999999998654
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.8e-05 Score=77.80 Aligned_cols=62 Identities=15% Similarity=0.254 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhc
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~ 316 (489)
.+...+.+.+++.|++++. +++|+++..+++ .+ .|.+.+| ++.||.||+|+|.... .++..+
T Consensus 150 ~l~~~l~~~~~~~G~~i~~-~~~V~~i~~~~~-~~-~v~~~~g-~~~a~~vV~a~G~~s~-~l~~~l 211 (372)
T 2uzz_A 150 LAIKTWIQLAKEAGCAQLF-NCPVTAIRHDDD-GV-TIETADG-EYQAKKAIVCAGTWVK-DLLPEL 211 (372)
T ss_dssp HHHHHHHHHHHHTTCEEEC-SCCEEEEEECSS-SE-EEEESSC-EEEEEEEEECCGGGGG-GTSTTC
T ss_pred HHHHHHHHHHHHCCCEEEc-CCEEEEEEEcCC-EE-EEEECCC-eEEcCEEEEcCCccHH-hhcccc
Confidence 3445566777788999999 999999986543 33 5777777 5999999999997653 344433
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-06 Score=86.22 Aligned_cols=99 Identities=17% Similarity=0.297 Sum_probs=75.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
..++++|||||+.|+.+|..|++. |. +|+++++.+... +.+.. .+ ....
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l 241 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGG---KVTLCYRNNLIL---RGFDE-----------TI-----------REEV 241 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTC---EEEEEESSSSSC---TTSCH-----------HH-----------HHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHH
Confidence 357899999999999999999998 65 799999876421 10000 00 0123
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
.+.+++.|++++++++|.+++.+. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus 242 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 294 (495)
T 2wpf_A 242 TKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRT 294 (495)
T ss_dssp HHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECC
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccc
Confidence 566788999999999999998653 36788899899999999999988753
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=6.2e-06 Score=84.63 Aligned_cols=99 Identities=17% Similarity=0.255 Sum_probs=75.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc---CCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH---GMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~---g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
..++++|||||+.|+.+|..|++. |. +|+++++.+... +.+.. .+ ....
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l 237 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGG---QVDLAYRGDMIL---RGFDS-----------EL-----------RKQL 237 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcC---eEEEEEcCCCcc---cccCH-----------HH-----------HHHH
Confidence 357999999999999999999998 65 799999876421 10000 00 0123
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
.+.+++.|++++++++|.+++.+. ..+.+.+|+++.+|.+|+|+|..|..
T Consensus 238 ~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~ 290 (490)
T 1fec_A 238 TEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRS 290 (490)
T ss_dssp HHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESC
T ss_pred HHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCc
Confidence 456778999999999999998653 36788889889999999999988763
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=6.4e-06 Score=85.24 Aligned_cols=97 Identities=20% Similarity=0.237 Sum_probs=74.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
++++|||||..|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.++
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~l~ 266 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKDN-----------ET-----------RAYVLDRMK 266 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCSH-----------HH-----------HHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHHcCC---eEEEEEecCccc---ccccH-----------HH-----------HHHHHHHHH
Confidence 799999999999999999999875 799999876421 00000 00 012356677
Q ss_pred HCCcEEEeCCcEEEEeC--CC----CEEEeCCCe-EEeeCcEEecCCCCCCC
Q 011267 132 EKGIEMIYQDPVTSIDI--EK----QTLITNSGK-LLKYGSLIVATGCTASR 176 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~--~~----~~v~~~~g~-~i~yd~lvlATG~~~~~ 176 (489)
+.|++++.+++|.+++. +. ..+.+.+|+ ++.+|.+|+|+|..|..
T Consensus 267 ~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~ 318 (523)
T 1mo9_A 267 EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS 318 (523)
T ss_dssp HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence 89999999999999986 33 347778887 89999999999988763
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.06 E-value=3.5e-06 Score=81.30 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=32.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~li~~~~~~ 89 (489)
..+||+|||||++|+++|..|+++ |. +|+|||+.+..
T Consensus 78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~---~V~LiEk~~~~ 116 (344)
T 3jsk_A 78 AETDIVIVGAGSCGLSAAYVLSTLRPDL---RITIVEAGVAP 116 (344)
T ss_dssp HBCSEEEECCSHHHHHHHHHHHHHCTTS---CEEEEESSSSC
T ss_pred CcCCEEEECccHHHHHHHHHHHhcCCCC---EEEEEeCCCcc
Confidence 468999999999999999999997 65 79999998654
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.7e-05 Score=83.09 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=81.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------------------------h-----------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------Q----------------- 244 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------~----------------- 244 (489)
..+|+|||||+.|+-+|..|++.|.+|+++++.+..- .
T Consensus 23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 102 (591)
T 3i3l_A 23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ 102 (591)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence 5789999999999999999999999999999872100 0
Q ss_pred --------------------hhh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC-CC--cEEEcCEE
Q 011267 245 --------------------RLF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE-DG--STIDADTI 300 (489)
Q Consensus 245 --------------------~~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~-~g--~~i~aD~v 300 (489)
..+ ...+...+.+.+++.|++++. +++|+++... ++.+..|.+. +| +++.||.|
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~-g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlV 180 (591)
T 3i3l_A 103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHE-ETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFV 180 (591)
T ss_dssp CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEET-TCCEEEEECC-STTCEEEEEEETTEEEEEEESEE
T ss_pred ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEe-CCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEE
Confidence 000 134566777888889999999 9999999854 4455567776 66 57999999
Q ss_pred EEccCCCCCCchhhhcCC
Q 011267 301 VIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl 318 (489)
|.|+|... .+.+.+++
T Consensus 181 V~AdG~~S--~lr~~lg~ 196 (591)
T 3i3l_A 181 IDAGGSGG--PISRKLGV 196 (591)
T ss_dssp EECCGGGC--HHHHHHTC
T ss_pred EECCCCcc--hhHHHcCC
Confidence 99999865 33344444
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.05 E-value=7.4e-06 Score=84.69 Aligned_cols=98 Identities=9% Similarity=0.064 Sum_probs=74.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
.-+++++|||||+.|+..|..+++.|. +|||++++..++..-+.+ ......
T Consensus 221 ~lP~~lvIIGgG~IGlE~A~~~~~lG~---~VTii~~~~~L~~~D~ei--------------------------~~~l~~ 271 (542)
T 4b1b_A 221 KDPGKTLVVGASYVALECSGFLNSLGY---DVTVAVRSIVLRGFDQQC--------------------------AVKVKL 271 (542)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEESSCSSTTSCHHH--------------------------HHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHHhcCC---eEEEecccccccccchhH--------------------------HHHHHH
Confidence 345789999999999999999999986 699997654322110000 022356
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+++.++.++++..+..+..... .+.+.++.++.+|.+++|+|-+|.
T Consensus 272 ~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pn 320 (542)
T 4b1b_A 272 YMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGD 320 (542)
T ss_dssp HHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEES
T ss_pred HHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCC
Confidence 67889999999999998876554 556778888999999999998775
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.1e-05 Score=78.27 Aligned_cols=99 Identities=15% Similarity=0.145 Sum_probs=71.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------hhCHHHH------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LFTPSLA------------------------------ 252 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------~~~~~~~------------------------------ 252 (489)
+|+|||+|+.|+-+|..|++.|.+|+|+++.+.+... .+.+...
T Consensus 3 ~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~~ 82 (412)
T 4hb9_A 3 HVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFYN 82 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEEC
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEec
Confidence 7999999999999999999999999999976432110 0011100
Q ss_pred -----------------------------HHHHHHHH-hcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 253 -----------------------------QRYEQLYQ-QNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 253 -----------------------------~~l~~~l~-~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
..+.+.|. ..+..+++ ++++++++..+++.+ .|+++||+++.||+||-
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~v~~-~~~v~~~~~~~~~~v-~v~~~dG~~~~adlvVg 160 (412)
T 4hb9_A 83 ERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILNKGLANTIQW-NKTFVRYEHIENGGI-KIFFADGSHENVDVLVG 160 (412)
T ss_dssp TTSCEEEC--------------CEEEEEHHHHHHHHHTTCTTTEEC-SCCEEEEEECTTSCE-EEEETTSCEEEESEEEE
T ss_pred CCcceecccCCccccccccccccceEeeHHHHHHHHHhhccceEEE-EEEEEeeeEcCCCeE-EEEECCCCEEEeeEEEE
Confidence 11223222 23446788 999999987666665 58999999999999999
Q ss_pred ccCCCCC
Q 011267 303 GIGAKPT 309 (489)
Q Consensus 303 a~G~~p~ 309 (489)
|-|....
T Consensus 161 ADG~~S~ 167 (412)
T 4hb9_A 161 ADGSNSK 167 (412)
T ss_dssp CCCTTCH
T ss_pred CCCCCcc
Confidence 9998653
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=6e-06 Score=84.49 Aligned_cols=98 Identities=17% Similarity=0.316 Sum_probs=72.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+.. .+ .....+.+
T Consensus 183 ~~~vvViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~l 234 (478)
T 1v59_A 183 PKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMDG-----------EV-----------AKATQKFL 234 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSCH-----------HH-----------HHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC---EEEEEEeCCccc---cccCH-----------HH-----------HHHHHHHH
Confidence 5799999999999999999999875 799999876421 00000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeC--CCC--EEEeC-----CCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDI--EKQ--TLITN-----SGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~--~~~--~v~~~-----~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++. +.. .+.+. ++.++.+|.+|+|+|..|..
T Consensus 235 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~ 289 (478)
T 1v59_A 235 KKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYI 289 (478)
T ss_dssp HHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECC
T ss_pred HHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCC
Confidence 788999999999999986 443 44554 45679999999999988763
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.3e-06 Score=85.65 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=73.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... +.+.. .+ .....+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 235 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM---QGADR-----------DL-----------VKVWQKQ 235 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999875 799999876421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCC----CeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS----GKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~----g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++++++|.+++.+.. .+.+.+ |+++.+|.+++|+|..|..
T Consensus 236 l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~ 288 (482)
T 1ojt_A 236 NEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNG 288 (482)
T ss_dssp HGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECG
T ss_pred HHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCC
Confidence 7788999999999999976543 566666 7789999999999988753
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-05 Score=80.55 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=76.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc----------------chh------h--------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH----------------LLQ------R-------------------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~----------------~l~------~-------------------- 245 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+. ++. .
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~ 87 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP 87 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence 4799999999999999999999999999998741 000 0
Q ss_pred -------------------hh-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe--CCCc--EEEcCEEE
Q 011267 246 -------------------LF-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL--EDGS--TIDADTIV 301 (489)
Q Consensus 246 -------------------~~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g~--~i~aD~vi 301 (489)
.+ ...+.+.+.+.+++.|++++. +++|+++..+ ++.+.+|.+ .+|+ ++.||.||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~-~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI 165 (512)
T 3e1t_A 88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRE-RHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIV 165 (512)
T ss_dssp SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEES-SCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEE
T ss_pred cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEE
Confidence 00 124556677778889999999 9999999864 455544544 4574 79999999
Q ss_pred EccCCCCC
Q 011267 302 IGIGAKPT 309 (489)
Q Consensus 302 ~a~G~~p~ 309 (489)
.|+|....
T Consensus 166 ~AdG~~S~ 173 (512)
T 3e1t_A 166 DASGNRTR 173 (512)
T ss_dssp ECCCTTCS
T ss_pred ECCCcchH
Confidence 99998653
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=7.8e-06 Score=83.54 Aligned_cols=99 Identities=11% Similarity=0.173 Sum_probs=72.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+++++.+...- + .+.. .+ .....+.+
T Consensus 178 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l~-~-~~~~-----------~~-----------~~~l~~~l 230 (474)
T 1zmd_A 178 PEKMVVIGAGVIGVELGSVWQRLGA---DVTAVEFLGHVGG-V-GIDM-----------EI-----------SKNFQRIL 230 (474)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSSC-S-SCCH-----------HH-----------HHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHHcCC---EEEEEeccCccCC-c-ccCH-----------HH-----------HHHHHHHH
Confidence 5789999999999999999999875 7999998764210 0 0000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCCC---EEEe-----CCCeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ---TLIT-----NSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~---~v~~-----~~g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++.+.. .+.+ .++.++++|.+|+|+|..|..
T Consensus 231 ~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~ 284 (474)
T 1zmd_A 231 QKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFT 284 (474)
T ss_dssp HHTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECC
T ss_pred HHCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCC
Confidence 789999999999999986542 3442 466789999999999988753
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=98.03 E-value=4.6e-06 Score=84.67 Aligned_cols=100 Identities=22% Similarity=0.261 Sum_probs=71.5
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc----------hhhhh---CH-HHHHHHHHHHHhcCcEEEEcCce
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------LQRLF---TP-SLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~----------l~~~~---~~-~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
+++|||+|+.|+.+|..|++. |.+|+++++.+.+ +.... ++ .+...+.+.+++.|++++. ++.
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~ 80 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQM-RHQ 80 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEE-SEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEe-CCE
Confidence 689999999999999999998 9999999988742 11110 11 1112234567788999999 999
Q ss_pred EEEEEeCCCCcEEEEEe-CC--CcEEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKL-ED--GSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~-~~--g~~i~aD~vi~a~G~~p~~~ 311 (489)
+..+... ++.+ .+.. .+ ++++.+|.+|+|+|.+|...
T Consensus 81 v~~i~~~-~~~v-~v~~~~~g~~~~~~~d~lviAtGs~p~~p 120 (452)
T 2cdu_A 81 VTNVDPE-TKTI-KVKDLITNEEKTEAYDKLIMTTGSKPTVP 120 (452)
T ss_dssp EEEEEGG-GTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEEcC-CCEE-EEEecCCCceEEEECCEEEEccCCCcCCC
Confidence 9999743 2322 2332 12 45799999999999988744
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=9.8e-06 Score=83.14 Aligned_cols=98 Identities=17% Similarity=0.288 Sum_probs=73.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||+.|+.+|..|++.|. +|+++++.+...- . .+ + ..+ .....+.
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l~------~-~~-~-----~~~-----------~~~l~~~ 245 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGK---EVVLIDVVDTCLA------G-YY-D-----RDL-----------TDLMAKN 245 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTT------T-TS-C-----HHH-----------HHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCC---eEEEEEcccchhh------h-HH-H-----HHH-----------HHHHHHH
Confidence 46789999999999999999999875 7999998764210 0 00 0 000 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++++++|.+++.+.+ .+.+ +|.++++|.+|+|+|..|.
T Consensus 246 l~~~GV~i~~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~ 292 (490)
T 2bc0_A 246 MEEHGIQLAFGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPN 292 (490)
T ss_dssp HHTTTCEEEETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEEC
T ss_pred HHhCCeEEEeCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcC
Confidence 7788999999999999987543 3555 6778999999999998875
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=8.8e-06 Score=83.94 Aligned_cols=37 Identities=16% Similarity=0.149 Sum_probs=33.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+||||||+|+||++||.+|++.|. +|+|||+.+..
T Consensus 40 ~~~DVvVVGaG~AGl~AA~~aa~~G~---~V~vlEk~~~~ 76 (510)
T 4at0_A 40 YEADVVVAGYGIAGVAASIEAARAGA---DVLVLERTSGW 76 (510)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeCCCCC
Confidence 45899999999999999999999986 69999998754
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=9.9e-06 Score=83.32 Aligned_cols=99 Identities=13% Similarity=0.250 Sum_probs=75.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 232 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTELGV---PVTVVASQDHVL---PYEDA-----------DA-----------ALVLEES 232 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHHTTC---CEEEECSSSSSS---CCSSH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999876421 00000 00 0223556
Q ss_pred HHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++++++|.+++.+. -.+.+.+|.++.+|.+|+|+|..|..
T Consensus 233 l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~ 281 (499)
T 1xdi_A 233 FAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNT 281 (499)
T ss_dssp HHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECC
T ss_pred HHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCC
Confidence 778999999999999998655 35666788889999999999988763
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=8.1e-06 Score=83.17 Aligned_cols=98 Identities=19% Similarity=0.263 Sum_probs=72.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+|+++.+... |.+.. .+ .....+.
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 221 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKNYGV---DVTIVEFLPRAL---PNEDA-----------DV-----------SKEIEKQ 221 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999875 799999875421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeC-CC--eEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~-~g--~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++++++|.+++.+.. .+.+. +| .++.+|.+++|+|..|.
T Consensus 222 l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 222 FKKLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp HHHHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred HHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence 7788999999999999986543 44543 56 67999999999998875
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=6.2e-05 Score=78.13 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=46.0
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
..+.+.+++.|++++. + +|+++..++++.+..|.+.+|+++.||.||.|+|.....
T Consensus 169 ~~L~~~a~~~gv~~~~-~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 169 DFLKRWAVERGVNRVV-D-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HHHHHHHHHTTCEEEE-C-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred HHHHHHHHHCCCEEEE-e-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence 4555666778999999 8 899998766666667889999889999999999987653
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=9.2e-06 Score=84.93 Aligned_cols=101 Identities=22% Similarity=0.241 Sum_probs=71.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcch------hhhhC-----H--HHHHHHHHHHHhcCcEEEEcCce
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLL------QRLFT-----P--SLAQRYEQLYQQNGVKFVKVGAS 272 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l------~~~~~-----~--~~~~~l~~~l~~~Gv~~~~~~~~ 272 (489)
++|+|||+|+.|+.+|..|++. +.+|+++++.+.+. +..+. . .+........++.|+++++ +++
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~ 80 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRV-KHE 80 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEET-TEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEE-CCE
Confidence 5799999999999999999988 78999999987531 11110 0 0111233444457999999 999
Q ss_pred EEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G~~p~~~ 311 (489)
|+++... .+.+ .+.. .+|+ ++.+|.+|+|||.+|...
T Consensus 81 V~~id~~-~~~v-~~~~~~~g~~~~~~~d~lviAtG~~p~~p 120 (565)
T 3ntd_A 81 VVAIDRA-AKLV-TVRRLLDGSEYQESYDTLLLSPGAAPIVP 120 (565)
T ss_dssp EEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEECC-CCEE-EEEecCCCCeEEEECCEEEECCCCCCCCC
Confidence 9999843 3333 3332 3354 799999999999988644
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.6e-05 Score=75.88 Aligned_cols=95 Identities=18% Similarity=0.185 Sum_probs=68.8
Q ss_pred cEEEECCCHHHHHHHHHHHh---CCCcEEEEccCCcchhhh----------------------hCH---HH---------
Q 011267 209 KVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPENHLLQRL----------------------FTP---SL--------- 251 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~---~g~~V~lv~~~~~~l~~~----------------------~~~---~~--------- 251 (489)
+|+|||+|..|+-+|..|++ .|.+|+++++.+.+..+. .+. .+
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~ 82 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA 82 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence 69999999999999999999 999999999764221100 000 11
Q ss_pred -----------------------------HHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 252 -----------------------------AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 252 -----------------------------~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
...+....++.|+++++ ++.|+++..++++ + .|.+.+|+++.+|.||+
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~-~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vV~ 159 (342)
T 3qj4_A 83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYF-RHRVTQINLRDDK-W-EVSKQTGSPEQFDLIVL 159 (342)
T ss_dssp TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEES-SCCEEEEEECSSS-E-EEEESSSCCEEESEEEE
T ss_pred CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEe-CCEEEEEEEcCCE-E-EEEECCCCEEEcCEEEE
Confidence 11222233334899999 9999999875443 3 47888888899999999
Q ss_pred ccCC
Q 011267 303 GIGA 306 (489)
Q Consensus 303 a~G~ 306 (489)
|+..
T Consensus 160 A~p~ 163 (342)
T 3qj4_A 160 TMPV 163 (342)
T ss_dssp CSCH
T ss_pred CCCH
Confidence 9873
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.00 E-value=2.8e-05 Score=80.65 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=76.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------------- 243 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------------------- 243 (489)
.+|+|||||+.|+-+|..|++.|.+|+++++.+.+.
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 85 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE 85 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence 479999999999999999999999999999874210
Q ss_pred -------h----h---------h--------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC---cEEEEEeCC
Q 011267 244 -------Q----R---------L--------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG---RVAAVKLED 291 (489)
Q Consensus 244 -------~----~---------~--------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~---~v~~v~~~~ 291 (489)
. . . + ...+...+.+.+++.|+++++ +++|++++.++++ .+ .+++.+
T Consensus 86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~-~~~v~~i~~~~~~~~~~v-~v~~~~ 163 (535)
T 3ihg_A 86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRF-GTRLLSFRQHDDDAGAGV-TARLAG 163 (535)
T ss_dssp SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEES-SCEEEEEEEECGGGCSEE-EEEEEE
T ss_pred ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEe-CCEEEEEEECCCCccccE-EEEEEc
Confidence 0 0 0 0 124556677888888999999 9999999876542 33 466666
Q ss_pred C---cEEEcCEEEEccCCCC
Q 011267 292 G---STIDADTIVIGIGAKP 308 (489)
Q Consensus 292 g---~~i~aD~vi~a~G~~p 308 (489)
+ .++.||.||.|.|...
T Consensus 164 ~~~~~~i~a~~vV~AdG~~S 183 (535)
T 3ihg_A 164 PDGEYDLRAGYLVGADGNRS 183 (535)
T ss_dssp TTEEEEEEEEEEEECCCTTC
T ss_pred CCCeEEEEeCEEEECCCCcc
Confidence 5 6899999999999865
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=3e-05 Score=77.38 Aligned_cols=100 Identities=20% Similarity=0.296 Sum_probs=75.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR---------------------------------------- 245 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~---------------------------------------- 245 (489)
...+|+|||||+.|+-+|..|++.|.+|+++++.+.+...
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 101 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS 101 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence 3568999999999999999999999999999987532100
Q ss_pred -----hh-----------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 246 -----LF-----------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 246 -----~~-----------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
.+ ...+.+.+.+.+++ +++++ +++|++++.+++ .+ .|++.+|+++.||.||.|
T Consensus 102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~-~~~v~~i~~~~~-~v-~v~~~~g~~~~a~~vV~A 176 (407)
T 3rp8_A 102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQF-GKRVTRCEEDAD-GV-TVWFTDGSSASGDLLIAA 176 (407)
T ss_dssp CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEE-SCCEEEEEEETT-EE-EEEETTSCEEEESEEEEC
T ss_pred CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEE-CCEEEEEEecCC-cE-EEEEcCCCEEeeCEEEEC
Confidence 00 02234455555554 88999 999999986543 33 588899999999999999
Q ss_pred cCCCCCC
Q 011267 304 IGAKPTV 310 (489)
Q Consensus 304 ~G~~p~~ 310 (489)
.|.....
T Consensus 177 dG~~S~v 183 (407)
T 3rp8_A 177 DGSHSAL 183 (407)
T ss_dssp CCTTCSS
T ss_pred CCcChHH
Confidence 9987654
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=81.89 Aligned_cols=107 Identities=17% Similarity=0.218 Sum_probs=79.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-------------------------------------hhh----
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------QRL---- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------------~~~---- 246 (489)
..|+|||+|+.|+-+|..|++.|.+|+++++.+.+. ...
T Consensus 50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~ 129 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG 129 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence 479999999999999999999999999999753210 000
Q ss_pred ---------------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe--CCC-cEEEcCEEEEccCCC
Q 011267 247 ---------------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL--EDG-STIDADTIVIGIGAK 307 (489)
Q Consensus 247 ---------------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g-~~i~aD~vi~a~G~~ 307 (489)
+ ...+.+.+.+.+++.|+++++ +++|++++.++++ + .|++ .+| +++.||.||.|.|..
T Consensus 130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~-~~~v~~l~~~~~~-v-~v~~~~~~G~~~~~a~~vV~ADG~~ 206 (570)
T 3fmw_A 130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPR-GHEVTRLRQDAEA-V-EVTVAGPSGPYPVRARYGVGCDGGR 206 (570)
T ss_dssp CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCB-SCEEEECCBCSSC-E-EEEEEETTEEEEEEESEEEECSCSS
T ss_pred ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEe-CCEEEEEEEcCCe-E-EEEEEeCCCcEEEEeCEEEEcCCCC
Confidence 0 134566777788888999999 9999999865444 3 3555 678 789999999999986
Q ss_pred CCCchhhhcCCe
Q 011267 308 PTVSPFERVGLN 319 (489)
Q Consensus 308 p~~~~~~~~gl~ 319 (489)
. ..-+.+|+.
T Consensus 207 S--~vR~~lGi~ 216 (570)
T 3fmw_A 207 S--TVRRLAADR 216 (570)
T ss_dssp C--HHHHHTTCC
T ss_pred c--hHHHHcCCC
Confidence 5 333444443
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=6.4e-06 Score=87.35 Aligned_cols=37 Identities=27% Similarity=0.393 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHH-cCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVE-HGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~-~g~~~~~V~li~~~~~~ 89 (489)
..+||+|||||++|+++|..|++ .|. +|+|||+.+..
T Consensus 31 ~~~dVlIVGaGpaGL~~A~~La~~~G~---~V~viEr~~~~ 68 (639)
T 2dkh_A 31 SQVDVLIVGCGPAGLTLAAQLAAFPDI---RTCIVEQKEGP 68 (639)
T ss_dssp SEEEEEEECCSHHHHHHHHHHTTCTTS---CEEEECSSSSC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHhCCC---CEEEEeCCCCC
Confidence 45799999999999999999999 887 79999998653
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-05 Score=82.00 Aligned_cols=98 Identities=15% Similarity=0.250 Sum_probs=71.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 224 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWARLGA---EVTVVEFAPRCA---PTLDE-----------DV-----------TNALVGA 224 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCC---EEEEEecCCccc---ccCCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999875421 10000 00 0123456
Q ss_pred H-HHCCcEEEeCCcEEEEeCCCC--EEEeC--CC--eEEeeCcEEecCCCCCC
Q 011267 130 Y-KEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~-~~~~i~~~~~~~V~~id~~~~--~v~~~--~g--~~i~yd~lvlATG~~~~ 175 (489)
+ ++.|++++++++|.+++.+.. .+.+. +| .++.+|.+|+|+|..|.
T Consensus 225 l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 225 LAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp HHHHTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred HhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence 7 889999999999999986543 45554 66 67999999999998875
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=7e-06 Score=89.88 Aligned_cols=37 Identities=19% Similarity=0.383 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+++||||||||++|+++|++|++.|. .+|+|||++..
T Consensus 3 ~~~dVvIIGgGi~Gls~A~~La~~G~--~~V~vlE~~~~ 39 (830)
T 1pj5_A 3 STPRIVIIGAGIVGTNLADELVTRGW--NNITVLDQGPL 39 (830)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC--CCEEEECSSCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCC--CcEEEEeCCCC
Confidence 45899999999999999999999975 26999999864
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=5.4e-05 Score=72.58 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=74.3
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchhh-------------------h------------------hC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR-------------------L------------------FT 248 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~~-------------------~------------------~~ 248 (489)
.+|+|||+|+.|+.+|..|++. |.+|+++++.+.+... . ..
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~ 145 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHA 145 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCH
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcch
Confidence 4799999999999999999998 9999999986433100 0 12
Q ss_pred HHHHHHHHHHHHhc-CcEEEEcCceEEEEEeCC--C-C--cEEEEEeC--------------CCcEEEc-----------
Q 011267 249 PSLAQRYEQLYQQN-GVKFVKVGASIKNLEAGS--D-G--RVAAVKLE--------------DGSTIDA----------- 297 (489)
Q Consensus 249 ~~~~~~l~~~l~~~-Gv~~~~~~~~v~~i~~~~--~-~--~v~~v~~~--------------~g~~i~a----------- 297 (489)
..+...+.+.+.+. |++++. ++.|+++..++ + + ++.+|.+. ++.++.|
T Consensus 146 ~~~~~~L~~~a~~~~GV~i~~-~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~ 224 (326)
T 2gjc_A 146 ALFISTVLSKVLQLPNVKLFN-ATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDL 224 (326)
T ss_dssp HHHHHHHHHHHHTSTTEEEET-TEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCS
T ss_pred HHHHHHHHHHHHHhcCcEEEe-cceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccc
Confidence 34455566666664 999999 99999998653 3 4 77777652 3357999
Q ss_pred ----CEEEEccCCCCC
Q 011267 298 ----DTIVIGIGAKPT 309 (489)
Q Consensus 298 ----D~vi~a~G~~p~ 309 (489)
+.||.|+|....
T Consensus 225 ~~~~~~VV~ATG~~~~ 240 (326)
T 2gjc_A 225 SQKHGVILSTTGHDGP 240 (326)
T ss_dssp STTCCEEEECCCCC--
T ss_pred cccCCEEEECcCCCch
Confidence 999999998743
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.4e-05 Score=81.82 Aligned_cols=98 Identities=20% Similarity=0.343 Sum_probs=74.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 190 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtli~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 241 (484)
T 3o0h_A 190 LPKSIVIVGGGYIGVEFANIFHGLGV---KTTLLHRGDLIL---RNFDY-----------DL-----------RQLLNDA 241 (484)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCcEEEECcCHHHHHHHHHHHHcCC---eEEEEECCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999875 799999876421 00000 00 0123455
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++.+++|.+++.+.. .+.+.+|+++.+|.+|+|+|..|.
T Consensus 242 l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 242 MVAKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPN 289 (484)
T ss_dssp HHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence 6778999999999999987543 677889989999999999998775
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=3.9e-05 Score=76.35 Aligned_cols=102 Identities=18% Similarity=0.310 Sum_probs=71.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----hh---C---H----------HH--------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----LF---T---P----------SL-------------- 251 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----~~---~---~----------~~-------------- 251 (489)
...+|+|||||+.|+.+|..|++.|.+|+++++.+.+..+ .+ . . .+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~ 104 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIADE 104 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEECS
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEECC
Confidence 3468999999999999999999999999999987532110 00 0 0 00
Q ss_pred ----------------------HHHHHHHHHh--cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 252 ----------------------AQRYEQLYQQ--NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 252 ----------------------~~~l~~~l~~--~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
...+.+.|.+ .++++++ +++|++++.++ +.+ .|++.+|+++.+|.||.|.|..
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~ad~vV~AdG~~ 181 (398)
T 2xdo_A 105 KGNILSTKNVKPENRFDNPEINRNDLRAILLNSLENDTVIW-DRKLVMLEPGK-KKW-TLTFENKPSETADLVILANGGM 181 (398)
T ss_dssp SSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCTTSEEE-SCCEEEEEECS-SSE-EEEETTSCCEEESEEEECSCTT
T ss_pred CCCchhhccccccCCCCCceECHHHHHHHHHhhcCCCEEEE-CCEEEEEEECC-CEE-EEEECCCcEEecCEEEECCCcc
Confidence 0011222221 1357888 99999998654 344 5888899899999999999987
Q ss_pred CCC
Q 011267 308 PTV 310 (489)
Q Consensus 308 p~~ 310 (489)
...
T Consensus 182 S~v 184 (398)
T 2xdo_A 182 SKV 184 (398)
T ss_dssp CSC
T ss_pred hhH
Confidence 653
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.7e-05 Score=79.26 Aligned_cols=98 Identities=23% Similarity=0.291 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh------------------------------hCH-H------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------FTP-S------ 250 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~------------------------------~~~-~------ 250 (489)
..++|||+|+.|+.+|..|++.|.+|+++++.+.+-..+ ++. .
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQDRKD 84 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHHHHH
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHHHHH
Confidence 469999999999999999999999999999766431110 000 0
Q ss_pred ----HH--HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcE--EEcCEEEEccCCCCCCc
Q 011267 251 ----LA--QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGST--IDADTIVIGIGAKPTVS 311 (489)
Q Consensus 251 ----~~--~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~--i~aD~vi~a~G~~p~~~ 311 (489)
+. ..+.+.+++.|++++. + .+..+.. .. ..|.+.+|++ +.+|.+|+|+|.+|...
T Consensus 85 ~~~~l~~~~~~~~~~~~~~v~~~~-g-~v~~id~---~~-~~V~~~~g~~~~~~~d~lviAtG~~p~~p 147 (466)
T 3l8k_A 85 YVQELRFKQHKRNMSQYETLTFYK-G-YVKIKDP---TH-VIVKTDEGKEIEAETRYMIIASGAETAKL 147 (466)
T ss_dssp HHHHHHHHHHHHHHTTCTTEEEES-E-EEEEEET---TE-EEEEETTSCEEEEEEEEEEECCCEEECCC
T ss_pred hheeccccchHHHHHHhCCCEEEE-e-EEEEecC---Ce-EEEEcCCCcEEEEecCEEEECCCCCccCC
Confidence 11 3444556678999987 5 6777652 22 3577788888 99999999999988654
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.8e-05 Score=80.88 Aligned_cols=101 Identities=17% Similarity=0.281 Sum_probs=71.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc------hhhhh------CHHHHHHHHHHH-HhcCcEEEEcCce
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL------LQRLF------TPSLAQRYEQLY-QQNGVKFVKVGAS 272 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~------l~~~~------~~~~~~~l~~~l-~~~Gv~~~~~~~~ 272 (489)
.+++|||+|+.|+.+|..|++. |.+|+++++.+.+ ++..+ ...+.....+.+ ++.|++++. ++.
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~-~~~ 115 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKV-RHE 115 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEES-SEE
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEe-CCE
Confidence 5899999999999999999986 8899999988653 11110 011111223445 445999999 999
Q ss_pred EEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccCCCCCCc
Q 011267 273 IKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 273 v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G~~p~~~ 311 (489)
|+.+... ++.+ .+.. .+|+ ++.+|.+|+|+|.+|...
T Consensus 116 v~~i~~~-~~~v-~v~~~~~g~~~~~~~d~lviAtG~~p~~p 155 (480)
T 3cgb_A 116 VTKVDTE-KKIV-YAEHTKTKDVFEFSYDRLLIATGVRPVMP 155 (480)
T ss_dssp EEEEETT-TTEE-EEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred EEEEECC-CCEE-EEEEcCCCceEEEEcCEEEECCCCcccCC
Confidence 9999743 3333 3433 4576 799999999999988643
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=4.8e-05 Score=77.51 Aligned_cols=99 Identities=25% Similarity=0.347 Sum_probs=70.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh------------------------------------hCH-
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL------------------------------------FTP- 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~------------------------------------~~~- 249 (489)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.... ++.
T Consensus 6 ~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 85 (470)
T 1dxl_A 6 ENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLA 85 (470)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHH
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCccCHH
Confidence 4679999999999999999999999999999886331000 000
Q ss_pred -----------HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCc
Q 011267 250 -----------SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 250 -----------~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~ 311 (489)
.+...+.+.+++.||+++. ++.+. +. .+. ..|.+.+| +++.+|.+|+|+|.+|...
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~-g~~~~-~~---~~~-~~v~~~~G~~~~i~~d~lIiAtGs~p~~p 154 (470)
T 1dxl_A 86 AMMGQKDKAVSNLTRGIEGLFKKNKVTYVK-GYGKF-VS---PSE-ISVDTIEGENTVVKGKHIIIATGSDVKSL 154 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEE-SCEEE-EE---TTE-EEECCSSSCCEEEECSEEEECCCEEECCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEE-eEEEE-ec---CCE-EEEEeCCCceEEEEcCEEEECCCCCCCCC
Confidence 0112234566778999999 87553 43 222 24566677 6899999999999988654
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7.2e-05 Score=77.05 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-c--EEEcC-EEEEccCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-S--TIDAD-TIVIGIGAKP 308 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~--~i~aD-~vi~a~G~~p 308 (489)
.+...+.+.+++.|+++++ ++.|+++..++++++.+|...++ + ++.|| .||+|+|...
T Consensus 203 ~l~~~L~~~~~~~Gv~i~~-~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 203 MLMKPLVETAEKLGVRAEY-DMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HHHHHHHHHHHHTTCEEEC-SEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred HHHHHHHHHHHHcCCEEEe-cCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence 4566677778889999999 99999998765688888877543 2 58996 9999999765
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.91 E-value=1.3e-05 Score=82.23 Aligned_cols=101 Identities=18% Similarity=0.330 Sum_probs=69.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch-----hh----hhCH-HHHHHHHHHH--HhcCcEEEEcCceEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-----QR----LFTP-SLAQRYEQLY--QQNGVKFVKVGASIK 274 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-----~~----~~~~-~~~~~l~~~l--~~~Gv~~~~~~~~v~ 274 (489)
.++|||||+|+.|+.+|..|.+.+.+|++|++.+... +. .+++ ++...+.+.+ ++.+++++. .+++
T Consensus 42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~--~~v~ 119 (502)
T 4g6h_A 42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYE--AEAT 119 (502)
T ss_dssp SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEE--EEEE
T ss_pred CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEE--EEEE
Confidence 4589999999999999999999999999999987532 11 1111 1111123322 345799887 6889
Q ss_pred EEEeCCCCcEEEEE------------------eCCCcEEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVK------------------LEDGSTIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~------------------~~~g~~i~aD~vi~a~G~~p~~~ 311 (489)
+|+.+ ...+ .+. ..++.++++|.+|+|+|.+|+..
T Consensus 120 ~ID~~-~k~V-~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~ 172 (502)
T 4g6h_A 120 SINPD-RNTV-TIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTF 172 (502)
T ss_dssp EEEGG-GTEE-EEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCT
T ss_pred EEEhh-hCEE-EEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccC
Confidence 98743 2222 222 13466899999999999998753
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=97.91 E-value=8.2e-05 Score=71.75 Aligned_cols=139 Identities=21% Similarity=0.217 Sum_probs=91.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchhh-------------------------------------hh
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQR-------------------------------------LF 247 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~~-------------------------------------~~ 247 (489)
...|+|||+|+.|+.+|..|++. |.+|+++++.+.+... ..
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~ 158 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKH 158 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEec
Confidence 45799999999999999999997 9999999987532100 00
Q ss_pred CHHHHHHHHHHHHh-cCcEEEEcCceEEEEEeCCC----------------C--cEEEEEeC--------------CCcE
Q 011267 248 TPSLAQRYEQLYQQ-NGVKFVKVGASIKNLEAGSD----------------G--RVAAVKLE--------------DGST 294 (489)
Q Consensus 248 ~~~~~~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~----------------~--~v~~v~~~--------------~g~~ 294 (489)
..++.+.+.+.+++ .|++++. ++.++++..+++ + ++.+|... +..+
T Consensus 159 ~~d~~~~L~~~a~~~~gV~i~~-~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~ 237 (344)
T 3jsk_A 159 AALFTSTVLSKVLQRPNVKLFN-ATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNT 237 (344)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEE-TEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEe-CCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceE
Confidence 13344566666666 5999999 999999875432 3 66677652 2247
Q ss_pred EEcCEEEEccCCCCCC-c----hhhhcCCeec-CCcEEeCCC-------CCC--CCCCeEEeccccc
Q 011267 295 IDADTIVIGIGAKPTV-S----PFERVGLNSS-VGGIQVDGQ-------FRT--RMPGIFAIGDVAA 346 (489)
Q Consensus 295 i~aD~vi~a~G~~p~~-~----~~~~~gl~~~-~g~i~vd~~-------~~t--~~~~Iya~GD~a~ 346 (489)
+.|+.||.|+|..... . .+...++... .|.-..|.. -.| -+|++|++|=.+.
T Consensus 238 i~Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~t~~v~~gl~~~gm~~~ 304 (344)
T 3jsk_A 238 INAPVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNNTREIVPGLIVGGMELS 304 (344)
T ss_dssp EECSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHTCEEEETTEEECGGGHH
T ss_pred EEcCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhcccCceEcCCEEEechhhH
Confidence 9999999999987542 1 1344554321 111111110 012 3699999997764
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.9e-06 Score=83.32 Aligned_cols=90 Identities=14% Similarity=0.194 Sum_probs=69.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-------hhh-hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------LQR-LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-------l~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
..++|+|||+|+.|+.+|..|++.|.+|+++++.+.+ ++. .++.++.+...+.+++.||++++ ++.+.
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~-~~~v~--- 196 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHP-NFEVG--- 196 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEET-TCCBT---
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEe-CCEec---
Confidence 3578999999999999999999999999999998754 121 13566777788889999999999 87652
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
. .+.++++ .+.+|.||+|+|..
T Consensus 197 ----~---~v~~~~~-~~~~d~vvlAtG~~ 218 (456)
T 2vdc_G 197 ----R---DASLPEL-RRKHVAVLVATGVY 218 (456)
T ss_dssp ----T---TBCHHHH-HSSCSEEEECCCCC
T ss_pred ----c---EEEhhHh-HhhCCEEEEecCCC
Confidence 0 1223333 35799999999986
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.2e-05 Score=79.99 Aligned_cols=96 Identities=18% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+++++.+... | +.. .+ .....+.
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~-~~~-----------~~-----------~~~l~~~ 225 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFARLGS---KVTVLARNTLFF---R-EDP-----------AI-----------GEAVTAA 225 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---T-SCH-----------HH-----------HHHHHHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEEECCccC---C-CCH-----------HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999876420 0 100 00 1223556
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++.+++|.+++.+.. .+.++ +.++.+|.+|+|+|..|.
T Consensus 226 l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~ 272 (467)
T 1zk7_A 226 FRAEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPN 272 (467)
T ss_dssp HHHTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEES
T ss_pred HHhCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcC
Confidence 7789999999999999976544 35555 567999999999998875
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.88 E-value=1.7e-05 Score=79.20 Aligned_cols=106 Identities=21% Similarity=0.206 Sum_probs=74.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCC------------cc-hhhhh-------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPEN------------HL-LQRLF------------------------- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~------------~~-l~~~~------------------------- 247 (489)
..|+|||+|.+|+-+|..|++. |.+|+++++.. .+ .+..+
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 116 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQEAQAEWTREQLLGALGSGKTL 116 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCSSCTTSHHHHCCCEECGGGCCTTCHHHHHHHHHHHHTGGGSSCCC
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCCCCcchhccCCcceeecccCCchHHHHHHHHHHHHHHHhCCCCCC
Confidence 5799999999999999999999 99999998753 12 01000
Q ss_pred ------------------------------------------------------CHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 248 ------------------------------------------------------TPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 248 ------------------------------------------------------~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
+..+...+.+.+++.|+++++ +++|
T Consensus 117 ~~~~~g~l~~~~~~~~~g~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~g~v~~~~l~~~L~~~~~~~Gv~i~~-~~~v 195 (405)
T 3c4n_A 117 EVEDRPLLHLLPAGEGSGLTPTLDALADFPEALALLDPARLPVARVDPRALTYRPGSLALLAAQQAIGQGAGLLL-NTRA 195 (405)
T ss_dssp CEEECCEEEEESSCCSSSCEEHHHHTTTCHHHHTTSCTTTSCEEEEETTCEEECHHHHHHHHHHHHHTTTCEEEC-SCEE
T ss_pred cEEeeCeEEehhhHhHCCCCCHHHHHHhCCCccccccCCcceEEEEcCCCEEEcHHHHHHHHHHHHHHCCCEEEc-CCEE
Confidence 012555677778889999999 9999
Q ss_pred E---------EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhh-hcCC
Q 011267 274 K---------NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE-RVGL 318 (489)
Q Consensus 274 ~---------~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~-~~gl 318 (489)
+ ++..+ ++.+ .|.+.+| ++.||.||+|+|.... .+++ .+++
T Consensus 196 ~~~~g~~~~~~i~~~-~~~v-~v~~~~g-~i~a~~VV~A~G~~s~-~l~~~~~g~ 246 (405)
T 3c4n_A 196 ELVPGGVRLHRLTVT-NTHQ-IVVHETR-QIRAGVIIVAAGAAGP-ALVEQGLGL 246 (405)
T ss_dssp EEETTEEEEECBCC---------CBCCE-EEEEEEEEECCGGGHH-HHHHHHHCC
T ss_pred EeccccccccceEee-CCeE-EEEECCc-EEECCEEEECCCccHH-HHHHHhcCC
Confidence 9 88643 3444 5666666 7999999999998753 4555 5444
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=80.32 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 173 ~~k~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 224 (492)
T 3ic9_A 173 LPKSVAVFGPGVIGLELGQALSRLGV---IVKVFGRSGSVA---NLQDE-----------EM-----------KRYAEKT 224 (492)
T ss_dssp CCSEEEEESSCHHHHHHHHHHHHTTC---EEEEECCTTCCT---TCCCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEECCccc---ccCCH-----------HH-----------HHHHHHH
Confidence 35799999999999999999999875 799999876521 10000 00 0122344
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeC--CC--eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITN--SG--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~--~g--~~i~yd~lvlATG~~~~~ 176 (489)
+++. ++++++++|..++.+.. .+.+. +| .++.+|.+++|+|..|..
T Consensus 225 l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~ 276 (492)
T 3ic9_A 225 FNEE-FYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANV 276 (492)
T ss_dssp HHTT-SEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESC
T ss_pred HhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCC
Confidence 5556 99999999999976543 34443 67 679999999999988753
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=78.94 Aligned_cols=98 Identities=18% Similarity=0.296 Sum_probs=74.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 169 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vt~v~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 220 (463)
T 4dna_A 169 LPESILIAGGGYIAVEFANIFHGLGV---KTTLIYRGKEIL---SRFDQ-----------DM-----------RRGLHAA 220 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---eEEEEEcCCccc---cccCH-----------HH-----------HHHHHHH
Confidence 36789999999999999999999875 799999876421 10000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC-C--EEE-eCCCeEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK-Q--TLI-TNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~-~--~v~-~~~g~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.+++|.+++.+. . .|. +.+|+ +.+|.+|+|+|..|..
T Consensus 221 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~ 270 (463)
T 4dna_A 221 MEEKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNT 270 (463)
T ss_dssp HHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESC
T ss_pred HHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCC
Confidence 778999999999999998753 2 677 78888 9999999999988753
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=1.1e-05 Score=77.46 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=32.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+||+|||||++|++||..|++.+. ..+|+|+|+.+..
T Consensus 65 ~~dv~IiG~G~aGl~aA~~la~~~~-g~~V~v~e~~~~~ 102 (326)
T 2gjc_A 65 VSDVIIVGAGSSGLSAAYVIAKNRP-DLKVCIIESSVAP 102 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCT-TSCEEEECSSSSC
T ss_pred cCCEEEECccHHHHHHHHHHHhcCC-CCeEEEEecCccc
Confidence 4699999999999999999999821 2379999997654
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3e-05 Score=79.57 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=72.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCC-CCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMA-DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~-~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
.++|+|||||+.|+.+|..|++.+.+ ..+|+++++.+.. ..+ .+ + ..+ .....+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~-~~~------~l-~-----~~~-----------~~~~~~~ 235 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN-MGK------IL-P-----EYL-----------SNWTMEK 235 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST-TTT------TS-C-----HHH-----------HHHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccc-ccc------cC-C-----HHH-----------HHHHHHH
Confidence 57899999999999999999874310 2479999876431 000 00 0 000 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+++.|++++++++|.+++.+.. .+.+.+|+++.+|.+|+|+|..|.
T Consensus 236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN 283 (493)
T ss_dssp HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence 7788999999999999975433 577889999999999999998875
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3e-05 Score=79.14 Aligned_cols=99 Identities=15% Similarity=0.282 Sum_probs=73.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||+|+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 179 ~~~~v~ViGgG~~g~e~A~~l~~~g~---~Vtlv~~~~~~l---~~~~~-----------~~-----------~~~l~~~ 230 (476)
T 3lad_A 179 VPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVDE-----------QV-----------AKEAQKI 230 (476)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCC---cEEEEecCCCcC---cccCH-----------HH-----------HHHHHHH
Confidence 45789999999999999999999875 799999876421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCCC---eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~g---~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++++++|.+++.+.. .+.+.++ .++.+|.+++|+|..|..
T Consensus 231 l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~ 282 (476)
T 3lad_A 231 LTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVT 282 (476)
T ss_dssp HHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECC
T ss_pred HHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccC
Confidence 7788999999999999986543 4555544 679999999999988753
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0001 Score=73.12 Aligned_cols=60 Identities=23% Similarity=0.367 Sum_probs=44.0
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
..+.+.+++.|+++++ ++.|+++..++ +.+ .|.+.+| ++.||.||+|+|.... .+++.++
T Consensus 157 ~~l~~~a~~~Gv~i~~-~~~V~~i~~~~-~~v-~v~t~~g-~i~a~~VV~A~G~~s~-~l~~~~g 216 (397)
T 2oln_A 157 AALFTLAQAAGATLRA-GETVTELVPDA-DGV-SVTTDRG-TYRAGKVVLACGPYTN-DLLEPLG 216 (397)
T ss_dssp HHHHHHHHHTTCEEEE-SCCEEEEEEET-TEE-EEEESSC-EEEEEEEEECCGGGHH-HHHGGGT
T ss_pred HHHHHHHHHcCCEEEC-CCEEEEEEEcC-CeE-EEEECCC-EEEcCEEEEcCCcChH-HHhhhcC
Confidence 3455666778999999 99999998643 334 4666665 7999999999998743 4555544
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=8.8e-06 Score=83.85 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
..+.+.+.+.+++.|+++++ ++.|++|..+ ++ .+++.+|+++.||.||+++-.
T Consensus 222 ~~l~~~l~~~l~~~g~~i~~-~~~V~~I~~~-~~---~v~~~~G~~~~ad~vI~t~P~ 274 (513)
T 4gde_A 222 GGIWIAVANTLPKEKTRFGE-KGKVTKVNAN-NK---TVTLQDGTTIGYKKLVSTMAV 274 (513)
T ss_dssp HHHHHHHHHTSCGGGEEESG-GGCEEEEETT-TT---EEEETTSCEEEEEEEEECSCH
T ss_pred HHHHHHHHHHHHhcCeeeec-ceEEEEEEcc-CC---EEEEcCCCEEECCEEEECCCH
Confidence 35667777888889999999 9999999843 33 467899999999999998653
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=6.2e-05 Score=82.34 Aligned_cols=64 Identities=25% Similarity=0.345 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCC
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
+...+.+.+++.|++++. ++.|+++... ++.+..|.+.+| ++.||.||+|+|.... .+++..|+
T Consensus 153 l~~~L~~~a~~~Gv~i~~-~t~V~~i~~~-~~~v~~V~t~~G-~i~Ad~VV~AaG~~s~-~l~~~~g~ 216 (830)
T 1pj5_A 153 AVQLLIKRTESAGVTYRG-STTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGM 216 (830)
T ss_dssp HHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTC
T ss_pred HHHHHHHHHHHcCCEEEC-CceEEEEEEe-CCEEEEEEECCc-EEECCEEEECCccchH-HHHHHhCC
Confidence 445566777889999999 9999999864 456667888877 7999999999998753 44444443
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=1.7e-05 Score=81.14 Aligned_cols=97 Identities=13% Similarity=0.154 Sum_probs=70.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||||+.|+.+|..|++.|. +|+++++....+. +.. .+ .....+.
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l~~----~d~-----------~~-----------~~~l~~~ 236 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKGLGY---EPTVMVRSIVLRG----FDQ-----------QM-----------AELVAAS 236 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSCSSTT----SCH-----------HH-----------HHHHHHH
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCCcc----cCH-----------HH-----------HHHHHHH
Confidence 35689999999999999999999875 7999987422110 000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCe-----EEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGK-----LLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~-----~i~yd~lvlATG~~~~ 175 (489)
+++.|++++.+++|.+++... ..+.+.++. ++.+|.+++|+|..|.
T Consensus 237 l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~ 290 (483)
T 3dgh_A 237 MEERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGL 290 (483)
T ss_dssp HHHTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred HHhCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccC
Confidence 778899999999999987532 246665543 7899999999998775
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=6.9e-05 Score=74.89 Aligned_cols=99 Identities=17% Similarity=0.230 Sum_probs=73.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchh---------hh------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQ---------RL------------------------------ 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~---------~~------------------------------ 246 (489)
..+|+|||||+.|+.+|..|++.|.+ |+++++.+.+.+ +.
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~g 83 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSG 83 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCCC
Confidence 35799999999999999999999999 999998753210 00
Q ss_pred ---------------------hCHHHHHHHHHHHHh-cC-cEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcC
Q 011267 247 ---------------------FTPSLAQRYEQLYQQ-NG-VKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDAD 298 (489)
Q Consensus 247 ---------------------~~~~~~~~l~~~l~~-~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD 298 (489)
....+.+.+.+.+++ .| +++++ +++|+++.. +++ + .+.+.+ | +++.||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~-~~~v~~i~~-~~~-v-~v~~~~~~~g~~~~~~ad 159 (410)
T 3c96_A 84 ATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRT-GLGVERIEE-RDG-R-VLIGARDGHGKPQALGAD 159 (410)
T ss_dssp CEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEE-SEEEEEEEE-ETT-E-EEEEEEETTSCEEEEEES
T ss_pred CEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEE-CCEEEEEec-CCc-c-EEEEecCCCCCceEEecC
Confidence 001344556666665 36 68999 999999986 443 3 355554 7 579999
Q ss_pred EEEEccCCCCC
Q 011267 299 TIVIGIGAKPT 309 (489)
Q Consensus 299 ~vi~a~G~~p~ 309 (489)
.||.|.|....
T Consensus 160 ~vV~AdG~~S~ 170 (410)
T 3c96_A 160 VLVGADGIHSA 170 (410)
T ss_dssp EEEECCCTTCH
T ss_pred EEEECCCccch
Confidence 99999998764
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00013 Score=75.18 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=45.8
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+.+.+++.|++++. + +|+++..++++.+..|++.+|+++.||.||.|+|....
T Consensus 177 ~~L~~~a~~~gv~~~~-~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 177 RYLSEYAIARGVRHVV-D-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHHHHHHHHTTCEEEE-C-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHHHHHHHHCCCEEEE-C-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4455666778999999 8 99999876667777889999988999999999998764
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.80 E-value=2.9e-05 Score=79.67 Aligned_cols=99 Identities=17% Similarity=0.240 Sum_probs=72.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 248 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWARLGA---KVTVVEFLDTIL---GGMDG-----------EV-----------AKQLQRM 248 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---SSSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---EEEEEecccccc---ccCCH-----------HH-----------HHHHHHH
Confidence 45789999999999999999999875 799998776421 00000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEEeCC---C--eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLITNS---G--KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~~~~---g--~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.+++|.+++.+.. .+.+.+ | .++.+|.+|+|||..|..
T Consensus 249 l~~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~ 302 (491)
T 3urh_A 249 LTKQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPST 302 (491)
T ss_dssp HHHTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECC
T ss_pred HHhCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCC
Confidence 7788999999999999876543 344442 4 579999999999988753
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=74.82 Aligned_cols=100 Identities=18% Similarity=0.272 Sum_probs=77.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------hhh-----------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------QRL----------------- 246 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~~~----------------- 246 (489)
...+|+|||+|+.|+-+|..|++.|.+|+++++.+.+. ...
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~ 90 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD 90 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence 45679999999999999999999999999999763210 000
Q ss_pred -------------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEccCCCC
Q 011267 247 -------------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP 308 (489)
Q Consensus 247 -------------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~---~i~aD~vi~a~G~~p 308 (489)
+ ...+.+.+.+.+++.|+++++ +++|++++.+++ .+ .|++.++. ++.||.||.|.|...
T Consensus 91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLR-GHTVRALTDEGD-HV-VVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEE-SCEEEEEEECSS-CE-EEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEc-CCEEEEEEEeCC-EE-EEEEEcCCCcEEEEeCEEEEccCccc
Confidence 0 134556677778888999999 999999986544 34 46777764 799999999999865
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.77 E-value=3.5e-05 Score=78.79 Aligned_cols=98 Identities=16% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+++++.+... +.+.. .+ .....+.+
T Consensus 187 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~~l---~~~d~-----------~~-----------~~~~~~~l 238 (478)
T 3dk9_A 187 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSFDS-----------MI-----------STNCTEEL 238 (478)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTSCH-----------HH-----------HHHHHHHH
T ss_pred CccEEEECCCHHHHHHHHHHHHcCC---eEEEEEeCCccc---cccCH-----------HH-----------HHHHHHHH
Confidence 5789999999999999999999875 799999865421 10000 00 01234567
Q ss_pred HHCCcEEEeCCcEEEEeCCC----CEEEeCC-------CeEEeeCcEEecCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEK----QTLITNS-------GKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~----~~v~~~~-------g~~i~yd~lvlATG~~~~~ 176 (489)
++.|++++.+++|.+++... ..+.+.+ |.++.+|.+++|+|..|..
T Consensus 239 ~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~ 295 (478)
T 3dk9_A 239 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNT 295 (478)
T ss_dssp HHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESC
T ss_pred HHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCC
Confidence 78899999999999987542 2455654 2678999999999988753
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.3e-05 Score=79.12 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=69.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||||+.|+.+|..|++.|. +|+++++....+ .+.. .+ .....+.
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~l~~~ 234 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTGIGL---DTTVMMRSIPLR----GFDQ-----------QM-----------SSLVTEH 234 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSST----TSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCC---ceEEEEcCcccc----cCCH-----------HH-----------HHHHHHH
Confidence 35689999999999999999999875 799998753211 0000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCC-C--CEEEeCC---Ce--EEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIE-K--QTLITNS---GK--LLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~-~--~~v~~~~---g~--~i~yd~lvlATG~~~~ 175 (489)
+++.|+++++++.+..+... . ..+.+.+ |+ ++.+|.+++|+|..|.
T Consensus 235 l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~ 288 (488)
T 3dgz_A 235 MESHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPE 288 (488)
T ss_dssp HHHTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEES
T ss_pred HHHCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcc
Confidence 77889999999888888652 2 2455443 55 4789999999998775
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.76 E-value=2.6e-05 Score=80.04 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------h--h---CHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-------L--F---TPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-------~--~---~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
..+|+|||+|+.|+.+|..|++. .+|+++++.+.+... . + ..++...+.+.+ +.|++++. ++.+.
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~-~~~v~ 184 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYL-ETSAL 184 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEET-TEEEC
T ss_pred cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEc-CCEEE
Confidence 45799999999999999999999 999999987654110 0 1 123333333434 56999999 99998
Q ss_pred EEEeCCCCcEEEEEeCCCc--EEEcCEEEEccCCCCCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~--~i~aD~vi~a~G~~p~~~ 311 (489)
++.... ..+.....++++ ++.+|.+|+|+|..|...
T Consensus 185 ~i~~~~-~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 185 GVFDKG-EYFLVPVVRGDKLIEILAKRVVLATGAIDSTM 222 (493)
T ss_dssp CCEECS-SSEEEEEEETTEEEEEEESCEEECCCEEECCC
T ss_pred EEEcCC-cEEEEEEecCCeEEEEECCEEEECCCCCccCC
Confidence 887543 333222234554 689999999999988643
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00018 Score=74.33 Aligned_cols=55 Identities=16% Similarity=0.266 Sum_probs=44.5
Q ss_pred HHHHHHHHh-cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 253 QRYEQLYQQ-NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 253 ~~l~~~l~~-~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.+.+.+++ .|++++. + +|+++..++++.+..|.+.+|+++.||.||.|+|....
T Consensus 179 ~~L~~~a~~~~Gv~i~~-~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 179 QLLTEHCTQKLGVTHIR-D-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHHHHHHHHTSCCEEEE-C-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HHHHHHHHhcCCCEEEE-e-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 445556666 8999999 8 69999876566666788888878999999999999765
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00015 Score=74.41 Aligned_cols=101 Identities=20% Similarity=0.221 Sum_probs=77.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch----------------------hhh----------------
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL----------------------QRL---------------- 246 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l----------------------~~~---------------- 246 (489)
....+|+|||+|+.|+-+|..|++.|.+|+++++.+.+. ...
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 88 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI 88 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence 445689999999999999999999999999999763210 000
Q ss_pred --------------h-CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc---EEEcCEEEEccCCCC
Q 011267 247 --------------F-TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS---TIDADTIVIGIGAKP 308 (489)
Q Consensus 247 --------------~-~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~---~i~aD~vi~a~G~~p 308 (489)
+ ...+.+.+.+.+++.|+++++ +++|++++.+++ .+ .+++.++. ++.+|.||.|.|...
T Consensus 89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~-~~~v~~i~~~~~-~v-~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRR-GHEVLSLTDDGA-GV-TVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEE-TCEEEEEEEETT-EE-EEEEEETTEEEEEEESEEEECCCTTC
T ss_pred ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEEC-CcEEEEEEEcCC-eE-EEEEEcCCCCEEEEeCEEEECCCcch
Confidence 0 124556677778888999999 999999986544 44 46676664 799999999999865
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00015 Score=80.36 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=72.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh-------h----CHHHHHHHHHHHHhc-CcEEEEcCceEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------F----TPSLAQRYEQLYQQN-GVKFVKVGASIK 274 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-------~----~~~~~~~l~~~l~~~-Gv~~~~~~~~v~ 274 (489)
..+++|||+|+.|+.+|..|++.|.+|+++++.+.+.... + ..++...+.+.+.+. +++++. ++.|.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~~~~k~~i~~~~~~~~~~~~~~~l~~~~~v~~~~-~~~V~ 206 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLLDTAGEQIDGMDSSAWIEQVTSELAEAEETTHLQ-RTTVF 206 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGGGSSCCEETTEEHHHHHHHHHHHHHHSTTEEEES-SEEEE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceeccCCccccCCCCHHHHHHHHHHHHhhcCCcEEEe-CCEEE
Confidence 4679999999999999999999999999999876442111 1 234444555566664 999999 99999
Q ss_pred EEEeCCCCcEEEEEe---------------CCCcEEEcCEEEEccCCCCCC
Q 011267 275 NLEAGSDGRVAAVKL---------------EDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~---------------~~g~~i~aD~vi~a~G~~p~~ 310 (489)
.+.. ++.+..+.. .++.++.+|.+|+|||..|..
T Consensus 207 ~i~~--~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~ 255 (965)
T 2gag_A 207 GSYD--ANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERP 255 (965)
T ss_dssp EEET--TTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECC
T ss_pred eeec--CCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCC
Confidence 8863 333222221 112368999999999998764
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.64 E-value=2.1e-05 Score=79.99 Aligned_cols=40 Identities=25% Similarity=0.505 Sum_probs=33.9
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
+++++ ++.|++|+..+++ + .|++.+|+++.||.||+|+..
T Consensus 248 ~~i~~-~~~V~~i~~~~~~-~-~v~~~~g~~~~ad~vi~a~p~ 287 (470)
T 3i6d_A 248 TKVYK-GTKVTKLSHSGSC-Y-SLELDNGVTLDADSVIVTAPH 287 (470)
T ss_dssp EEEEC-SCCEEEEEECSSS-E-EEEESSSCEEEESEEEECSCH
T ss_pred CEEEe-CCceEEEEEcCCe-E-EEEECCCCEEECCEEEECCCH
Confidence 68999 9999999875444 3 588899989999999999875
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=2.6e-05 Score=87.02 Aligned_cols=93 Identities=20% Similarity=0.264 Sum_probs=71.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcchh--------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQ--------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~l~--------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
+++|+|||+|+.|+.+|..|++.|. +|+++++.+.+.. ..++.+..++..+.+++.||++++ ++.+..
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~~~~ip~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~-- 263 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIIC-GKSLSE-- 263 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEE-SCCBST--
T ss_pred CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccccccCCcccCCHHHHHHHHHHHHHCCcEEEc-ccEecc--
Confidence 5689999999999999999999999 7999998765421 113455666677888999999999 876621
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCC-CCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGA-KPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~-~p~ 309 (489)
. .+.+++++++.+|.||+|||. +|.
T Consensus 264 ----~---~v~~~~~~~~~~d~vvlAtGa~~p~ 289 (1025)
T 1gte_A 264 ----N---EITLNTLKEEGYKAAFIGIGLPEPK 289 (1025)
T ss_dssp ----T---SBCHHHHHHTTCCEEEECCCCCEEC
T ss_pred ----c---eEEhhhcCccCCCEEEEecCCCCCC
Confidence 1 134455556789999999998 475
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00034 Score=71.84 Aligned_cols=60 Identities=15% Similarity=0.182 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCCCCchhh
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~~~~~ 314 (489)
+...+.+.+++.|+++++ +++|+++..++ .+..|.+ .+|+ ++.||.||.|+|.... .++.
T Consensus 151 l~~~l~~~a~~~Gv~i~~-~~~V~~l~~~~--~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~-~l~~ 215 (501)
T 2qcu_A 151 LVLANAQMVVRKGGEVLT-RTRATSARREN--GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK-QFFD 215 (501)
T ss_dssp HHHHHHHHHHHTTCEEEC-SEEEEEEEEET--TEEEEEEEETTTCCEEEEEESCEEECCGGGHH-HHHH
T ss_pred HHHHHHHHHHHcCCEEEc-CcEEEEEEEeC--CEEEEEEEECCCCCEEEEECCEEEECCChhHH-HHHH
Confidence 445566777788999999 99999998643 4556776 3565 7999999999998764 3443
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.2e-05 Score=79.67 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=69.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcch--------hh-hhCHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLL--------QR-LFTPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
...+++|||+|+.|+.+|..|.+.| .+|+++++.+.+. +. .....+...+.+.+++.||+++. ++.+.
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~ 83 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYG-NVEVG 83 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEB-SCCBT
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEe-eeEEe
Confidence 3578999999999999999999988 8999999887653 11 11235666778888899999999 87651
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p 308 (489)
. .|.+++. ++.+|.||+|||..|
T Consensus 84 -------~---~V~~~~~-~~~~d~lVlAtGs~~ 106 (460)
T 1cjc_A 84 -------R---DVTVQEL-QDAYHAVVLSYGAED 106 (460)
T ss_dssp -------T---TBCHHHH-HHHSSEEEECCCCCE
T ss_pred -------e---EEEeccc-eEEcCEEEEecCcCC
Confidence 1 1333333 478999999999985
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=5.2e-05 Score=74.39 Aligned_cols=36 Identities=17% Similarity=0.372 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++++||+|||||++|+++|++|++.|. +|+|||++.
T Consensus 4 ~~~~dVvVIG~Gi~Gls~A~~La~~G~---~V~vle~~~ 39 (363)
T 1c0p_A 4 HSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL 39 (363)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---EEEEEeccC
Confidence 356899999999999999999999886 799999875
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=9.3e-05 Score=78.93 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=66.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-----hhhC-----HHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ-----RLFT-----PSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~-----~~~~-----~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.. ..++ .+....+.+.+++.||++++ ++.++.
T Consensus 373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~- 450 (671)
T 1ps9_A 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKL-NHTVTA- 450 (671)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEE-SCCCCS-
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEe-CcEecH-
Confidence 46899999999999999999999999999998764411 1111 23445667778889999999 775421
Q ss_pred EeCCCCcEEEEEeCCCcEE-EcCEEEEccCCCCCCc
Q 011267 277 EAGSDGRVAAVKLEDGSTI-DADTIVIGIGAKPTVS 311 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g~~i-~aD~vi~a~G~~p~~~ 311 (489)
..+ .+|.||+|||.+|...
T Consensus 451 ----------------~~~~~~d~lviAtG~~p~~~ 470 (671)
T 1ps9_A 451 ----------------DQLQAFDETILASGIVPRTP 470 (671)
T ss_dssp ----------------SSSCCSSEEEECCCEEECCC
T ss_pred ----------------HHhhcCCEEEEccCCCcCCC
Confidence 123 8999999999988754
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=9.7e-05 Score=76.23 Aligned_cols=98 Identities=15% Similarity=0.227 Sum_probs=66.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||||+.|+.+|..|++.|. +|+++++....+ .+.. .+ .....+.
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~~G~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~~~~~ 259 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILLR----GFDQ-----------DM-----------ANKIGEH 259 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSST----TSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCC---eEEEEecccccc----cCCH-----------HH-----------HHHHHHH
Confidence 34679999999999999999999875 799998742111 0000 00 0123456
Q ss_pred HHHCCcEEEeCCcEEEEeCCC----C--EEE--eCCC---eEEeeCcEEecCCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK----Q--TLI--TNSG---KLLKYGSLIVATGCTASR 176 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~----~--~v~--~~~g---~~i~yd~lvlATG~~~~~ 176 (489)
+++.|++++.+.++..+.... . .+. ..+| .++.+|.+++|+|..|..
T Consensus 260 l~~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~ 317 (519)
T 3qfa_A 260 MEEHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACT 317 (519)
T ss_dssp HHHTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESC
T ss_pred HHHCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccC
Confidence 788899999987766664311 2 232 2455 257899999999988753
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00059 Score=71.39 Aligned_cols=53 Identities=21% Similarity=0.217 Sum_probs=41.0
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
.+.+.+++.||+++. ++.|+++..++++++.+|.. .+|+ ++.|+.||+|+|..
T Consensus 148 ~L~~~~~~~gv~i~~-~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 148 TLYQQNLKNHTTIFS-EWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp HHHHHHHHTTCEEEE-TEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred HHHHHHHhCCCEEEe-CcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence 345556677999999 99999998644577777765 4565 58999999999974
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=5.1e-05 Score=77.39 Aligned_cols=54 Identities=28% Similarity=0.426 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.+.+.+.+.+++.|+++++ ++.|++|...+++ +..|.+ ++.++.||.||+|++.
T Consensus 235 ~l~~~l~~~l~~~g~~i~~-~~~V~~i~~~~~~-~~~v~~-~~~~~~ad~vv~a~p~ 288 (477)
T 3nks_A 235 MLPQALETHLTSRGVSVLR-GQPVCGLSLQAEG-RWKVSL-RDSSLEADHVISAIPA 288 (477)
T ss_dssp HHHHHHHHHHHHTTCEEEC-SCCCCEEEECGGG-CEEEEC-SSCEEEESEEEECSCH
T ss_pred HHHHHHHHHHHhcCCEEEe-CCEEEEEEEcCCc-eEEEEE-CCeEEEcCEEEECCCH
Confidence 5677888889999999999 9999999865433 235655 4557999999999875
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.56 E-value=4.7e-05 Score=76.68 Aligned_cols=35 Identities=17% Similarity=0.257 Sum_probs=31.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+++||+|||||++|+++|..|++.|+ +|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~~G~---~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQHDV---DVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHHTTC---EEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHCCC---eEEEEcCCC
Confidence 45799999999999999999999987 799999876
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=97.55 E-value=7.8e-05 Score=73.21 Aligned_cols=39 Identities=21% Similarity=0.297 Sum_probs=34.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC-CCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE-AYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~-~~~ 89 (489)
....+||+|||||++||+||+.|++.|+ +|+|+|++ +..
T Consensus 41 ~~~~~~V~IIGAGiaGL~aA~~L~~~G~---~V~VlE~~~~~v 80 (376)
T 2e1m_A 41 PGPPKRILIVGAGIAGLVAGDLLTRAGH---DVTILEANANRV 80 (376)
T ss_dssp CCSCCEEEEECCBHHHHHHHHHHHHTSC---EEEEECSCSSCC
T ss_pred CCCCceEEEECCCHHHHHHHHHHHHCCC---cEEEEecccccc
Confidence 3457899999999999999999999986 79999998 654
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00029 Score=71.73 Aligned_cols=98 Identities=17% Similarity=0.266 Sum_probs=71.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-------------hhh------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-------------LQR------------------------------ 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-------------l~~------------------------------ 245 (489)
.|+|||+|..|+-+|..|++.|.+|+++++...- +..
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~ 80 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE 80 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence 3799999999999999999999999999876100 000
Q ss_pred -----------------------------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC
Q 011267 246 -----------------------------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290 (489)
Q Consensus 246 -----------------------------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~ 290 (489)
.....+...+.+.+++.||+++. ++.+ ++..+ ++++.++...
T Consensus 81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~-~~~v-~l~~~-~~~v~Gv~v~ 157 (472)
T 2e5v_A 81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIE-DRLV-EIRVK-DGKVTGFVTE 157 (472)
T ss_dssp HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEEC-CCEE-EEEEE-TTEEEEEEET
T ss_pred HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEE-CcEE-EEEEe-CCEEEEEEEE
Confidence 00113345556666778999999 9999 98753 4666666653
Q ss_pred -CCcEEEcCEEEEccCCCCC
Q 011267 291 -DGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 291 -~g~~i~aD~vi~a~G~~p~ 309 (489)
++.++.+|.||+|+|..+.
T Consensus 158 ~~~g~~~a~~VVlAtGg~~~ 177 (472)
T 2e5v_A 158 KRGLVEDVDKLVLATGGYSY 177 (472)
T ss_dssp TTEEECCCSEEEECCCCCGG
T ss_pred eCCCeEEeeeEEECCCCCcc
Confidence 2335789999999998764
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=4.6e-05 Score=78.69 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~li~~~~~~~ 90 (489)
++.+||+|||||+|||+||..|++.| + +|+|+|+++..+
T Consensus 6 ~~~~~VvIIGaG~aGL~AA~~L~~~G~~---~V~VlEa~~riG 45 (516)
T 1rsg_A 6 PAKKKVIIIGAGIAGLKAASTLHQNGIQ---DCLVLEARDRVG 45 (516)
T ss_dssp CEEEEEEEECCBHHHHHHHHHHHHTTCC---SEEEECSSSSSB
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhcCCC---CEEEEeCCCCCC
Confidence 34579999999999999999999998 5 799999987654
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=8.7e-05 Score=74.39 Aligned_cols=39 Identities=18% Similarity=0.268 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcC-CCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHG-MADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g-~~~~~V~li~~~~~~~ 90 (489)
++++||+|||||++||+||..|++.| . +|+|+|+++...
T Consensus 4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~---~v~v~E~~~~~G 43 (424)
T 2b9w_A 4 SKDSRIAIIGAGPAGLAAGMYLEQAGFH---DYTILERTDHVG 43 (424)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHTTCC---CEEEECSSSCSS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhCCCC---cEEEEECCCCCC
Confidence 35689999999999999999999998 5 799999987754
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=2.4e-05 Score=79.34 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=68.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHh-C------CCcEEEEccCCcchhh---------hhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVG-W------KLDTTIIFPENHLLQR---------LFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~-~------g~~V~lv~~~~~~l~~---------~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
..+|+|||+|+.|+.+|..|.+ . +.+|+++++.+.+... ....++...+.+.+++.||+++. +
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~-~ 81 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFG-N 81 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEE-S
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEe-e
Confidence 4689999999999999999999 7 8999999988654311 12235666777888889999999 7
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
..+ . . .|.++++ ++.+|.||+|+|..
T Consensus 82 v~v-----~--~---~v~~~~~-~~~~d~lViAtG~~ 107 (456)
T 1lqt_A 82 VVV-----G--E---HVQPGEL-SERYDAVIYAVGAQ 107 (456)
T ss_dssp CCB-----T--T---TBCHHHH-HHHSSEEEECCCCC
T ss_pred EEE-----C--C---EEEECCC-eEeCCEEEEeeCCC
Confidence 543 1 1 1444555 47899999999997
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.51 E-value=9e-05 Score=75.12 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+.+.+.+.+++.|+++++ ++.|++|.... ++++..|++ +|+++.||.||+++|..|.
T Consensus 242 ~~l~~al~~~~~~~G~~i~~-~~~V~~i~~~~~~~~~~~V~~-~g~~~~ad~VV~a~~~~~~ 301 (453)
T 2bcg_G 242 GELPQGFARLSAIYGGTYML-DTPIDEVLYKKDTGKFEGVKT-KLGTFKAPLVIADPTYFPE 301 (453)
T ss_dssp THHHHHHHHHHHHTTCEEEC-SCCCCEEEEETTTTEEEEEEE-TTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEEC-CCEEEEEEEECCCCeEEEEEE-CCeEEECCEEEECCCccch
Confidence 36777888889999999999 99999998642 566667776 5778999999999998864
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=78.51 Aligned_cols=99 Identities=13% Similarity=0.176 Sum_probs=72.8
Q ss_pred CCCcEEEEc--CchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 50 ENREFVIVG--GGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 50 ~~~~vvIIG--gG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
..++|+||| +|..|+.+|..|++.|. +|++++..+...- ...+ . .. .....
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~~g~---~Vtlv~~~~~l~~--------~~~~--~---~~-----------~~~l~ 574 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQKGY---EVSIVTPGAQVSS--------WTNN--T---FE-----------VNRIQ 574 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHHTTC---EEEEEESSSSTTG--------GGGG--G---TC-----------HHHHH
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHhCCC---eeEEEeccccccc--------cccc--c---hh-----------HHHHH
Confidence 456799999 99999999999999875 7999987654210 0000 0 00 01235
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEe---CCCeEEeeCcEEecCCCCCC
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLIT---NSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~---~~g~~i~yd~lvlATG~~~~ 175 (489)
+.+++.|++++.+++|.+++.+...+.. .++.++.+|.+|+|+|..|.
T Consensus 575 ~~l~~~GV~i~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 575 RRLIENGVARVTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp HHHHHTTCEEEESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred HHHHHCCCEEEcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 6678899999999999999987655553 25668999999999998764
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=5.5e-05 Score=75.13 Aligned_cols=35 Identities=26% Similarity=0.522 Sum_probs=32.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+||+|||||++|+++|++|++.|. +|+|||+...
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~~G~---~V~vlE~~~~ 38 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAERGH---RVLVLERHTF 38 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence 4799999999999999999999987 6999999764
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=5.3e-05 Score=76.69 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=33.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
.++||+|||||++||+||..|++.|+ +|+|+|+++...
T Consensus 4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G 41 (453)
T 2yg5_A 4 LQRDVAIVGAGPSGLAAATALRKAGL---SVAVIEARDRVG 41 (453)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEECCCCCC
Confidence 45799999999999999999999986 699999987653
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00018 Score=75.72 Aligned_cols=96 Identities=11% Similarity=0.221 Sum_probs=65.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
..+++|||||..|+.+|..|++.|. +|+++++.... +.+.. .+ .....+.+
T Consensus 286 ~~~vvViGgG~~g~E~A~~l~~~g~---~Vtlv~~~~~l----~~~d~-----------~~-----------~~~~~~~l 336 (598)
T 2x8g_A 286 PGKTLVIGASYVALECAGFLASLGG---DVTVMVRSILL----RGFDQ-----------QM-----------AEKVGDYM 336 (598)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCSS----TTSCH-----------HH-----------HHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCC---EEEEEECCcCc----CcCCH-----------HH-----------HHHHHHHH
Confidence 4589999999999999999999975 69999875211 00000 00 01234556
Q ss_pred HHCCcEEEeCCcEEEEeC-------C--CCE--EE--eCCCeEEe--eCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDI-------E--KQT--LI--TNSGKLLK--YGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~-------~--~~~--v~--~~~g~~i~--yd~lvlATG~~~~ 175 (489)
++.|++++.++.+..+.. . ... +. ..+|+++. +|.+++|+|..|.
T Consensus 337 ~~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~ 396 (598)
T 2x8g_A 337 ENHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ 396 (598)
T ss_dssp HHTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEEC
T ss_pred HhCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccc
Confidence 788999999877766632 1 122 22 35776655 9999999998875
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00011 Score=73.09 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=34.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~~~ 90 (489)
.++||+|||||++|++||..|++. |. +|+|+|+++..+
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~~~g~---~v~v~E~~~~~G 44 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVATQLDK---RVLVLERRPHIG 44 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHHHSCC---CEEEECSSSSSS
T ss_pred ccCCEEEECCCHHHHHHHHHHHHhCCC---CEEEEeCCCCCC
Confidence 368999999999999999999998 76 799999987654
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=74.85 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++.+||+|||||+|||+||+.|++.|+ +|+|+|+.+...
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~---~v~v~E~~~~~G 47 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGY---KVTVLEARTRPG 47 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCC---CEEEEeccCCCC
Confidence 456899999999999999999999986 799999987654
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=9.2e-05 Score=75.48 Aligned_cols=40 Identities=18% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
....+||+|||||++|++||..|++.|+ +|+|+|+++...
T Consensus 13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~---~v~v~E~~~~~G 52 (478)
T 2ivd_A 13 RTTGMNVAVVGGGISGLAVAHHLRSRGT---DAVLLESSARLG 52 (478)
T ss_dssp ----CCEEEECCBHHHHHHHHHHHTTTC---CEEEECSSSSSB
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEEcCCCCC
Confidence 3457899999999999999999999987 799999987653
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00012 Score=72.40 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+||+|||||++|+++|..|++.|. +|+|+|+.+...
T Consensus 27 ~~~~dv~IIGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 65 (397)
T 3hdq_A 27 SKGFDYLIVGAGFAGSVLAERLASSGQ---RVLIVDRRPHIG 65 (397)
T ss_dssp CCCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCC---ceEEEeccCCCC
Confidence 456899999999999999999999876 699999987654
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=74.99 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
|+++||+|||||++|++||++|++.|. +.+|+|+|+++...
T Consensus 2 m~~~~v~IiGaG~~Gl~~A~~L~~~g~-~~~v~v~E~~~~~G 42 (475)
T 3lov_A 2 MSSKRLVIVGGGITGLAAAYYAERAFP-DLNITLLEAGERLG 42 (475)
T ss_dssp CCSCEEEEECCBHHHHHHHHHHHHHCT-TSEEEEECSSSSSB
T ss_pred CCcccEEEECCCHHHHHHHHHHHHhCC-CCCEEEEECCCCCC
Confidence 346899999999999999999999982 35899999976643
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00077 Score=70.67 Aligned_cols=97 Identities=19% Similarity=0.240 Sum_probs=71.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchh------------------------hh---------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ------------------------RL--------------- 246 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~------------------------~~--------------- 246 (489)
..|+|||+|..|+-+|..|++.| .+|+++++.+.... ..
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v~~ 85 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDY 85 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence 46999999999999999999999 99999987532100 00
Q ss_pred ------------------h----------------------------CHHHHHHHHHHHHhcC-cEEEEcCceEEEEEeC
Q 011267 247 ------------------F----------------------------TPSLAQRYEQLYQQNG-VKFVKVGASIKNLEAG 279 (489)
Q Consensus 247 ------------------~----------------------------~~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~ 279 (489)
| +..+...+.+.+++.| |+++. ++.++++..+
T Consensus 86 ~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~-~~~v~~l~~~ 164 (602)
T 1kf6_A 86 FVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFD-EHFVLDILVD 164 (602)
T ss_dssp HHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEE-TEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEe-CCEEEEEEEe
Confidence 0 0123344555566678 99999 9999999854
Q ss_pred CCCcEEEEEe---CCCc--EEEcCEEEEccCC
Q 011267 280 SDGRVAAVKL---EDGS--TIDADTIVIGIGA 306 (489)
Q Consensus 280 ~~~~v~~v~~---~~g~--~i~aD~vi~a~G~ 306 (489)
++++.+|.. .+|+ ++.|+.||+|+|.
T Consensus 165 -~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg 195 (602)
T 1kf6_A 165 -DGHVRGLVAMNMMEGTLVQIRANAVVMATGG 195 (602)
T ss_dssp -TTEEEEEEEEETTTTEEEEEECSCEEECCCC
T ss_pred -CCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 566666543 5676 6999999999994
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00066 Score=71.86 Aligned_cols=100 Identities=19% Similarity=0.267 Sum_probs=74.1
Q ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCcch----------------h--------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLL----------------Q-------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~-~g~~V~lv~~~~~~l----------------~-------------------------- 244 (489)
..|+|||+|+.|+-+|..|++ .|.+|+++++.+.+. .
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~~~ 112 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPDPG 112 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEECTT
T ss_pred CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCCCC
Confidence 479999999999999999999 999999999763210 0
Q ss_pred --h---------------------hhC-HHHHHHHHHHHHhcCc--EEEEcCceEEEEEeCCC--CcEEEEEeC------
Q 011267 245 --R---------------------LFT-PSLAQRYEQLYQQNGV--KFVKVGASIKNLEAGSD--GRVAAVKLE------ 290 (489)
Q Consensus 245 --~---------------------~~~-~~~~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~--~~v~~v~~~------ 290 (489)
. .++ ..+.+.+.+.+++.|+ ++++ +++|++++.+++ +....|++.
T Consensus 113 ~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~-~~~v~~l~~~~~~~~~~v~v~~~~~~~~~ 191 (639)
T 2dkh_A 113 QPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHY-ARRVLDVKVDHGAADYPVTVTLERCDAAH 191 (639)
T ss_dssp STTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBC-SEEEEEEEECTTCSSCCEEEEEEECSGGG
T ss_pred CCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEec-CCEEEEEEECCCCCcCCEEEEEEeccccC
Confidence 0 000 2455677788888887 9999 999999986543 222245554
Q ss_pred CC--cEEEcCEEEEccCCCC
Q 011267 291 DG--STIDADTIVIGIGAKP 308 (489)
Q Consensus 291 ~g--~~i~aD~vi~a~G~~p 308 (489)
+| +++.||.||.|.|...
T Consensus 192 ~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 192 AGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp TTCEEEEEEEEEEECCCTTC
T ss_pred CCCeEEEEeCEEEECCCcch
Confidence 45 4799999999999754
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0001 Score=79.19 Aligned_cols=88 Identities=17% Similarity=0.153 Sum_probs=59.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh-----h-----CHHHHHHHHHHHHhc------CcEEEEcC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----F-----TPSLAQRYEQLYQQN------GVKFVKVG 270 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-----~-----~~~~~~~l~~~l~~~------Gv~~~~~~ 270 (489)
.++|+|||||+.|+.+|..|++.|.+|+++++.+.+.... + -..+.+++.+.++.. ++++.. +
T Consensus 389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~-~ 467 (729)
T 1o94_A 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG-Q 467 (729)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECS-C
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEe-C
Confidence 4689999999999999999999999999999986542110 0 012333333333332 555544 3
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
. .+.++++.++.+|.||+|||..|.
T Consensus 468 ~--------------~v~~~~~~~~~~d~vviAtG~~~~ 492 (729)
T 1o94_A 468 K--------------PMTADDVLQYGADKVIIATGARWN 492 (729)
T ss_dssp C--------------CCCHHHHHTSCCSEEEECCCEEEC
T ss_pred e--------------EEehhhccccCCCEEEEcCCCCcc
Confidence 2 133344556889999999999854
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00019 Score=70.92 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=31.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHc--CCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEH--GMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~--g~~~~~V~li~~~~~~ 89 (489)
+||+|||||++|+++|..|++. |. +|+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~---~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLW---AIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTS---EEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCC---CEEEEECCCCC
Confidence 4899999999999999999998 66 79999998654
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00014 Score=70.95 Aligned_cols=36 Identities=14% Similarity=0.073 Sum_probs=30.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCC---CCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGM---ADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~---~~~~V~li~~~~ 87 (489)
+||+|||||++|+++|++|++.|. +..+|+|||++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 489999999999999999999871 124899999976
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00018 Score=74.45 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=34.8
Q ss_pred HH-CCcEEEeCCcEEEEeCCC--C--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KE-KGIEMIYQDPVTSIDIEK--Q--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~-~~i~~~~~~~V~~id~~~--~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+ .|++++.+ +|++++.+. . .|.+.+|.++.+|.||.|+|....
T Consensus 186 ~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~ 234 (526)
T 2pyx_A 186 TQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSL 234 (526)
T ss_dssp HHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCC
T ss_pred HhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchH
Confidence 45 79999998 699997542 2 566778778999999999998654
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=72.20 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=67.8
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc----------------------h-hh------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL----------------------L-QR------------------ 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~----------------------l-~~------------------ 245 (489)
+|+|||||+.|+.+|..|++. |.+|+++++.+.+ . ..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 81 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHHN 81 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeCC
Confidence 689999999999999999999 9999999986543 0 00
Q ss_pred -------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 246 -------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 246 -------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.....+.+.+.+.+++.|+++++ +++|++++.. +++.+|.||.|.|....
T Consensus 82 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~-~~~v~~i~~~-------------~~~~ad~vV~AdG~~S~ 144 (381)
T 3c4a_A 82 EPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRF-ESPLLEHGEL-------------PLADYDLVVLANGVNHK 144 (381)
T ss_dssp SEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEET-TCCCCSGGGC-------------CGGGCSEEEECCGGGGG
T ss_pred eeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEe-CCEeccchhc-------------ccccCCEEEECCCCCch
Confidence 01145667788888888999999 9988887521 13689999999998653
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00025 Score=72.51 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++++||+|||||++|++||+.|++.|. .+|+|+|+++...
T Consensus 7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~--~~v~v~E~~~~~G 46 (484)
T 4dsg_A 7 LLTPKIVIIGAGPTGLGAAVRLTELGY--KNWHLYECNDTPG 46 (484)
T ss_dssp CCSCCEEEECCSHHHHHHHHHHHHTTC--CSEEEEESSSSSS
T ss_pred ccCCCEEEECcCHHHHHHHHHHHHcCC--CCEEEEeCCCCCC
Confidence 456899999999999999999999872 3799999987654
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00021 Score=70.73 Aligned_cols=38 Identities=21% Similarity=0.443 Sum_probs=33.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+++||+|||||++|+++|..|++.|. +|+|+|+++...
T Consensus 2 ~~~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G 39 (384)
T 2bi7_A 2 KSKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIG 39 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEEecCCcC
Confidence 34799999999999999999999876 799999987654
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00024 Score=72.74 Aligned_cols=56 Identities=21% Similarity=0.350 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhcC-cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNG-VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~G-v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
..+.+.+.+.+++.| +++++ ++.|++|...++ .+ .|.+.+|+++.||.||+|+|..
T Consensus 255 ~~l~~~l~~~l~~~g~~~i~~-~~~V~~i~~~~~-~v-~v~~~~g~~~~ad~vI~a~~~~ 311 (495)
T 2vvm_A 255 SAFARRFWEEAAGTGRLGYVF-GCPVRSVVNERD-AA-RVTARDGREFVAKRVVCTIPLN 311 (495)
T ss_dssp HHHHHHHHHHHHTTTCEEEES-SCCEEEEEECSS-SE-EEEETTCCEEEEEEEEECCCGG
T ss_pred HHHHHHHHHHhhhcCceEEEe-CCEEEEEEEcCC-EE-EEEECCCCEEEcCEEEECCCHH
Confidence 356777888888888 99999 999999986543 34 5788888889999999999953
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00019 Score=74.67 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+||+|||||++|+++|..|++.|. +|+|||+.+..
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~~G~---~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAHRQV---GHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCC
Confidence 5799999999999999999999987 69999998653
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00073 Score=69.91 Aligned_cols=32 Identities=16% Similarity=0.329 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..|+|||+|..|+-+|..|++ |.+|+++++.+
T Consensus 9 ~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~ 40 (540)
T 1chu_A 9 CDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGP 40 (540)
T ss_dssp CSEEEECCSHHHHHHHHHHTT-TSCEEEECSSC
T ss_pred CCEEEECccHHHHHHHHHHhc-CCcEEEEECCC
Confidence 479999999999999999999 99999999874
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00023 Score=73.03 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=33.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+.+||+|||||++||+||..|++.|+ +|+|+|+.+...
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~G 49 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG 49 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEeCCCCC
Confidence 46899999999999999999999986 799999987754
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00019 Score=73.86 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=35.2
Q ss_pred HHCCcEEEeCCcEEEEeCC--C--CEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIE--K--QTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~--~--~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.+.|++++.+ +|+++..+ . ..|.+.+|.++.+|.+|.|+|....
T Consensus 184 ~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~ 231 (511)
T 2weu_A 184 IARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGL 231 (511)
T ss_dssp HHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCC
T ss_pred HHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchH
Confidence 4569999998 99999763 2 2467788888999999999998654
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00023 Score=69.89 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=32.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+||+|||||++|++||..|++.|. +|+|+|+++..+
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~~g~---~v~v~E~~~~~G 37 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIG 37 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC---cEEEEecCCCCC
Confidence 689999999999999999999876 699999987654
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0003 Score=72.11 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=34.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
..++||+|||||++|++||..|++.|. +|+|+|+.+...
T Consensus 31 ~~~~~v~IiGaG~~Gl~aA~~l~~~g~---~v~vlE~~~~~g 69 (498)
T 2iid_A 31 SNPKHVVIVGAGMAGLSAAYVLAGAGH---QVTVLEASERPG 69 (498)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTC---EEEEECSSSSSB
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhCCC---eEEEEECCCCCC
Confidence 346899999999999999999999986 799999987643
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0028 Score=66.01 Aligned_cols=53 Identities=13% Similarity=0.121 Sum_probs=39.7
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeC---CCc--EEEcCEEEEccCCCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE---DGS--TIDADTIVIGIGAKPT 309 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~ 309 (489)
+.+.+++.|+++++ +++|+++..+ ++++.+|++. +|+ ++.||.||+|+|....
T Consensus 194 l~~~a~~~Ga~i~~-~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~ 251 (571)
T 2rgh_A 194 NIKKAAEDGAYLVS-KMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD 251 (571)
T ss_dssp HHHHHHHTTCEEES-SEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred HHHHHHHcCCeEEe-ccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence 34455678999999 9999999864 4566667653 343 6999999999997643
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.16 E-value=0.002 Score=67.57 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
.+.+.+++.||+++. ++.++++..+ ++++.+|.. .+|+ .+.|+.||+|+|...
T Consensus 160 ~L~~~~~~~gv~i~~-~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 160 TLYGRSLRYDTSYFV-EYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp HHHHHHTTSCCEEEE-TEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred HHHHHHHhCCCEEEE-ceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence 344445567899999 9999999853 567777765 4665 689999999999654
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00039 Score=67.76 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++||+|||||+||+.||..|++.|. +|+|||+.+.
T Consensus 1 m~dViVIGgG~AG~~AA~~la~~G~---~V~liE~~~~ 35 (443)
T 3g5s_A 1 MERVNVVGAGLAGSEAAWTLLRLGV---PVRLFEMRPK 35 (443)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTC---CEEEECCTTT
T ss_pred CCCEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 3799999999999999999999987 7999998764
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0027 Score=65.84 Aligned_cols=95 Identities=19% Similarity=0.303 Sum_probs=68.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 244 (489)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+.+..
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~ 106 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWVTRV 106 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEeccC
Confidence 4799999999999999999999999999997632100
Q ss_pred -h-h---h---------------------C-HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---C--
Q 011267 245 -R-L---F---------------------T-PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---G-- 292 (489)
Q Consensus 245 -~-~---~---------------------~-~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g-- 292 (489)
. . + + ..+.+.+.+.+++. +++ +++|++++.++++ + .+++.+ |
T Consensus 107 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~-~~~v~~~~~~~~~-v-~v~~~~~~~G~~ 180 (549)
T 2r0c_A 107 GGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRT-RSRLDSFEQRDDH-V-RATITDLRTGAT 180 (549)
T ss_dssp TSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EEC-SEEEEEEEECSSC-E-EEEEEETTTCCE
T ss_pred CCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---ccc-CcEEEEEEEeCCE-E-EEEEEECCCCCE
Confidence 0 0 0 0 13444556666655 778 9999999865444 3 355544 6
Q ss_pred cEEEcCEEEEccCCCC
Q 011267 293 STIDADTIVIGIGAKP 308 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p 308 (489)
+++.||.||.|.|...
T Consensus 181 ~~i~a~~vVgADG~~S 196 (549)
T 2r0c_A 181 RAVHARYLVACDGASS 196 (549)
T ss_dssp EEEEEEEEEECCCTTC
T ss_pred EEEEeCEEEECCCCCc
Confidence 4799999999999765
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00028 Score=74.71 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||.||++||.+|++.|. +|+|||+.+.
T Consensus 4 ~~~DVvVIGgG~AGL~AAl~aae~G~---~V~vlEK~~~ 39 (660)
T 2bs2_A 4 QYCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIPV 39 (660)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCG
T ss_pred ccccEEEECchHHHHHHHHHHHHCCC---cEEEEeccCC
Confidence 35799999999999999999999886 6999999753
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0039 Score=65.91 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+.+.+++.||+++. ++.|+++.. +++++.+|.. .+|+ .+.|+.||+|+|..
T Consensus 164 L~~~a~~~gv~i~~-~~~v~~L~~-~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~ 219 (660)
T 2bs2_A 164 VANECLKLGVSIQD-RKEAIALIH-QDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY 219 (660)
T ss_dssp HHHHHHHHTCEEEC-SEEEEEEEE-ETTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred HHHHHHhCCCEEEE-CcEEEEEEe-cCCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence 44455667999999 999999975 3567766655 4675 48999999999954
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00033 Score=73.34 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||+||++||.+|++.|. +|+|||+.+.
T Consensus 6 ~~~DVvVVGaG~AGl~AA~~la~~G~---~V~vlEK~~~ 41 (588)
T 2wdq_A 6 REFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP 41 (588)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCG
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCC
Confidence 35799999999999999999999986 7999999753
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00067 Score=68.20 Aligned_cols=58 Identities=17% Similarity=0.350 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+.+.+.+.+++.|+++++ ++.|++|... ++++..|. .+|+++.||.||+++|..+.
T Consensus 234 ~~l~~~l~~~~~~~G~~i~~-~~~V~~I~~~-~~~v~~v~-~~g~~~~ad~VV~a~~~~~~ 291 (433)
T 1d5t_A 234 GELPQGFARLSAIYGGTYML-NKPVDDIIME-NGKVVGVK-SEGEVARCKQLICDPSYVPD 291 (433)
T ss_dssp THHHHHHHHHHHHHTCCCBC-SCCCCEEEEE-TTEEEEEE-ETTEEEECSEEEECGGGCGG
T ss_pred HHHHHHHHHHHHHcCCEEEC-CCEEEEEEEe-CCEEEEEE-ECCeEEECCEEEECCCCCcc
Confidence 36777888888889999999 9999999854 45665566 47788999999999998874
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00037 Score=74.00 Aligned_cols=36 Identities=31% Similarity=0.448 Sum_probs=32.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~-----~g~~~~~V~li~~~~~ 88 (489)
+.+||+||||||+|+++|..|++ .|. +|+|||+.+.
T Consensus 7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi---~v~viE~~~~ 47 (665)
T 1pn0_A 7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRST 47 (665)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHhccccccCCC---CEEEEeCCCC
Confidence 35799999999999999999999 887 7999998764
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00092 Score=68.59 Aligned_cols=32 Identities=22% Similarity=0.188 Sum_probs=29.0
Q ss_pred CcEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~-~g~~V~lv~~~ 239 (489)
-.|+|||||+.|+-+|..|++ .|.+|+|++++
T Consensus 11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~ 43 (513)
T 4gde_A 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSN 43 (513)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESS
T ss_pred CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECC
Confidence 369999999999999999987 59999999977
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00047 Score=72.40 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=31.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||||||||+||++||.+|++.|. +|+|||+..
T Consensus 17 ~~~DVvVVG~G~AGl~AAl~aa~~G~---~V~vlEK~~ 51 (621)
T 2h88_A 17 HEFDAVVVGAGGAGLRAAFGLSEAGF---NTACVTKLF 51 (621)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCC---cEEEEeccC
Confidence 35799999999999999999999986 699999975
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00066 Score=68.62 Aligned_cols=58 Identities=16% Similarity=0.315 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 249 PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 249 ~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
..+.+.+.+.+++.|+++++ ++.|++|..++++++.+|++.+|+++.||.||++++..
T Consensus 256 ~~L~~aL~r~~~~~Gg~i~l-~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~ 313 (475)
T 3p1w_A 256 GGIPEGFSRMCAINGGTFML-NKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYV 313 (475)
T ss_dssp THHHHHHHHHHHHC--CEES-SCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGC
T ss_pred HHHHHHHHHHHHHcCCEEEe-CCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCcc
Confidence 46778888999999999999 99999998645678889999999999999999999988
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00062 Score=70.99 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=32.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+||+|||||++|+++|+.|++.|. +|+|||++.
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~rG~---~V~LlE~~~ 65 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAASGI---KTGLIEMQD 65 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCC
Confidence 46899999999999999999999987 699999875
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00063 Score=71.94 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=31.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc------CCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH------GMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~------g~~~~~V~li~~~~~ 88 (489)
..+||||||||+||++||.+|++. |. +|+|||+...
T Consensus 21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~---~V~vleK~~~ 62 (662)
T 3gyx_A 21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEA---KILLVDKASL 62 (662)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHHHHCTTC---CEEEECSSCT
T ss_pred EEcCEEEECCCHHHHHHHHHHHhhccccCCCC---cEEEEEecCC
Confidence 358999999999999999999997 75 6999999753
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00074 Score=72.71 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=34.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+..+||+|||||++|++||..|++.|+ +|+|+|+.+..
T Consensus 333 ~~~~~~v~viG~G~~Gl~aA~~l~~~g~---~v~v~E~~~~~ 371 (776)
T 4gut_A 333 DYHNKSVIIIGAGPAGLAAARQLHNFGI---KVTVLEAKDRI 371 (776)
T ss_dssp GGTSCEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSS
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEecccce
Confidence 3456899999999999999999999987 79999987654
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00085 Score=70.99 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=31.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHH---H-cCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFV---E-HGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~---~-~g~~~~~V~li~~~~~ 88 (489)
..+||||||||+||++||.+|+ + .|. +|+|||+.+.
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~---~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGGL---KVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTC---CEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCCC---eEEEEeCcCC
Confidence 3589999999999999999999 5 675 7999999864
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0012 Score=70.11 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+||+|||||++|++||..|++.|+ +|+|+|+.+..+
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g 143 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG 143 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSB
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC---eEEEEecCCCCC
Confidence 456899999999999999999999987 799999987643
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0082 Score=60.54 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC------CcEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g------~~V~lv~~~~~~ 242 (489)
..+|+|||||++|+-+|..|++.| .+|+++++.+++
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~ 46 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV 46 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence 357999999999999999999999 899999987544
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0076 Score=63.68 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=37.9
Q ss_pred HHHHhc-Cc-EEEEcCceEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEccCCCC
Q 011267 257 QLYQQN-GV-KFVKVGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAKP 308 (489)
Q Consensus 257 ~~l~~~-Gv-~~~~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~aD~vi~a~G~~p 308 (489)
+.+++. || +++. ++.|+++..+++ +++.+|.. .+|+ .+.|+.||+|+|...
T Consensus 159 ~~~~~~~gv~~i~~-~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~ 218 (643)
T 1jnr_A 159 EAAKMAVGEENIYE-RVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGAT 218 (643)
T ss_dssp HHHHHHHCGGGEEC-SEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBC
T ss_pred HHHHhcCCCcEEEe-cCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCccc
Confidence 344455 89 9999 999999986533 27777664 5665 689999999999653
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0016 Score=70.79 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||||++||+||+.|++.|+ +|+|+|+.+...
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~~g~---~v~v~E~~~~~G 314 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG 314 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCcCC
Confidence 456899999999999999999999987 799999987654
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.007 Score=64.19 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=29.9
Q ss_pred CcEEEECCCHHHHHHHHHHHh-----CCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG-----WKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~-----~g~~V~lv~~~ 239 (489)
..|+|||+|+.|+-+|..|++ .|.+|+++++.
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~ 45 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR 45 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence 369999999999999999999 99999999975
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0099 Score=63.98 Aligned_cols=42 Identities=17% Similarity=0.374 Sum_probs=34.7
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.|+++++ ++.|++|...++ .+ .|++.+|+++.||.||+|+..
T Consensus 542 ~gl~I~l-~t~V~~I~~~~~-~v-~V~~~~G~~i~Ad~VIvA~P~ 583 (776)
T 4gut_A 542 EGLDIQL-KSPVQCIDYSGD-EV-QVTTTDGTGYSAQKVLVTVPL 583 (776)
T ss_dssp TTSCEES-SCCEEEEECSSS-SE-EEEETTCCEEEESEEEECCCH
T ss_pred hCCcEEc-CCeeEEEEEcCC-EE-EEEECCCcEEEcCEEEECCCH
Confidence 3789999 999999986544 44 588889989999999999853
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0018 Score=65.71 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHhc--------CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 250 SLAQRYEQLYQQN--------GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 250 ~~~~~l~~~l~~~--------Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
.+.+.+.+.+.+. |.++++ ++.|++|...+ +.+ .|++.+|+++.||.||+|++.
T Consensus 207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~-~~~V~~i~~~~-~~v-~v~~~~g~~~~ad~vI~a~~~ 268 (472)
T 1b37_A 207 AVVYYLAGQYLKTDDKSGKIVDPRLQL-NKVVREIKYSP-GGV-TVKTEDNSVYSADYVMVSASL 268 (472)
T ss_dssp HHHHHHHHTTSCBCTTTCCBCCTTEES-SCCEEEEEECS-SCE-EEEETTSCEEEESEEEECSCH
T ss_pred HHHHHHHHhccccccccccccccEEEc-CCEEEEEEEcC-CcE-EEEECCCCEEEcCEEEEecCH
Confidence 3444555555443 678999 99999998654 444 488899989999999999874
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0017 Score=67.28 Aligned_cols=64 Identities=16% Similarity=0.272 Sum_probs=48.2
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--EE---EcCEEEEccCCCCCCchhhhcCCe
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS--TI---DADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i---~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.+....++.|+++++ ++.|++|..+ ++++.+|++.+ |+ ++ .++.||+|+|......+|..+|+.
T Consensus 201 ~l~~~~~~~~~~i~~-~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG~~~sp~lL~~sGig 272 (546)
T 1kdg_A 201 YLQTALARPNFTFKT-NVMVSNVVRN-GSQILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILFQSGIG 272 (546)
T ss_dssp HHHHHHTCTTEEEEC-SCCEEEEEEE-TTEEEEEEESCTTSSGGGEEEEEEEEEEEECSHHHHHHHHHHHTTBS
T ss_pred HHHHHhhCCCcEEEe-CCEEEEEEEe-CCEEEEEEEEecCCCceeEEEEEeCCEEEEcCChhcCHHHHHHcCCC
Confidence 444444456999999 9999999864 46788888865 53 34 889999999987655777777764
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=68.15 Aligned_cols=59 Identities=14% Similarity=0.178 Sum_probs=43.1
Q ss_pred HHhcCcEEEEcCceEEEEEeCCC--CcEEEEEeC--CCc--EE---EcCEEEEccCCCCCCchhhhcCC
Q 011267 259 YQQNGVKFVKVGASIKNLEAGSD--GRVAAVKLE--DGS--TI---DADTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 259 l~~~Gv~~~~~~~~v~~i~~~~~--~~v~~v~~~--~g~--~i---~aD~vi~a~G~~p~~~~~~~~gl 318 (489)
.++.|+++++ ++.|+++..+++ +++.+|+.. +|+ ++ .++.||+|+|...+..+|..+|+
T Consensus 204 ~~~~~~~v~~-~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~~~v~a~k~VILaaGa~~sp~lL~~SGi 271 (536)
T 1ju2_A 204 GNSNNLRVGV-HASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLLLLSGV 271 (536)
T ss_dssp SCTTTEEEEE-SCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred hcCCCcEEEe-CCEEEEEEECCCCCCEEEEEEEEeCCCceEEEEeccCCEEEEcCcccCCHHHHHHcCC
Confidence 4678999999 999999986543 478888874 465 34 57899999997544456655554
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.002 Score=67.06 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+.+|+||||||.||+.+|.+|.+.+ ..+|+|||+.+.
T Consensus 4 ~~~yDyIVVGgG~AG~v~A~rLse~~--~~~VLllEaG~~ 41 (577)
T 3q9t_A 4 GSHFDFVIVGGGTAGNTVAGRLAENP--NVTVLIVEAGIG 41 (577)
T ss_dssp TCEEEEEEESCSHHHHHHHHHHTTST--TSCEEEECSSCS
T ss_pred CCcccEEEECCcHHHHHHHHHHHhCC--CCcEEEEecCCC
Confidence 35699999999999999999999875 358999999876
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.002 Score=66.44 Aligned_cols=58 Identities=19% Similarity=0.367 Sum_probs=42.6
Q ss_pred HhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC---cEEEcCEEEEccCCCCCCchhhhcCCe
Q 011267 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTIVIGIGAKPTVSPFERVGLN 319 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G~~p~~~~~~~~gl~ 319 (489)
.+.++.++. ++.+.++..+ ++++++|...+. .++.++.||+|.|..-...+|..+|+.
T Consensus 222 ~r~nl~v~~-~~~v~~i~~~-~~~a~gv~~~~~~~~~~~~a~~VILsAGai~SP~LLl~SGig 282 (526)
T 3t37_A 222 GRKNLTILT-GSRVRRLKLE-GNQVRSLEVVGRQGSAEVFADQIVLCAGALESPALLMRSGIG 282 (526)
T ss_dssp TCTTEEEEC-SCEEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECSHHHHHHHHHHHTTEE
T ss_pred CCCCeEEEe-CCEEEEEEec-CCeEEEEEEEecCceEEEeecceEEcccccCCcchhhhccCC
Confidence 456799999 9999999854 566666665432 357899999999976554677777654
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.017 Score=59.03 Aligned_cols=61 Identities=16% Similarity=0.186 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC------cEEEEEeCCC-----cEEEcCEEEEccCCCCCCc
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG------RVAAVKLEDG-----STIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~------~v~~v~~~~g-----~~i~aD~vi~a~G~~p~~~ 311 (489)
++.++++...++.+..+.+ +++|++++..+.+ ....|+..++ +++.|+.||+|+|..|+.+
T Consensus 146 E~~~Yl~~~A~~~~~~vrf-~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP 217 (501)
T 4b63_A 146 EFEDYMRWCAQQFSDVVAY-GEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP 217 (501)
T ss_dssp HHHHHHHHHHHTTGGGEEE-SEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred HHHHHHHHHHHHcCCceEc-ceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence 5667777777777777888 9999999864432 1345555443 3689999999999988754
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=68.69 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=32.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCC-----CCCcEEEEcCCC-CC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGM-----ADGRLCIVSKEA-YA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~-----~~~~V~li~~~~-~~ 89 (489)
..++|+|||||++||+||+.|++.|. +..+|+|+|+.+ ..
T Consensus 55 ~~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 55 GNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 35789999999999999999999871 013799999987 54
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0037 Score=57.48 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
.|+|||+|+.|+.+|..|++.|.+|+|+++.+.+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~ 37 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS 37 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 5999999999999999999999999999988754
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0075 Score=63.73 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=37.7
Q ss_pred HHHHHHhc--CcEEEEcCceEEEEEeCCC--CcEEEEEe---CCCc--EEEcCEEEEccCCC
Q 011267 255 YEQLYQQN--GVKFVKVGASIKNLEAGSD--GRVAAVKL---EDGS--TIDADTIVIGIGAK 307 (489)
Q Consensus 255 l~~~l~~~--Gv~~~~~~~~v~~i~~~~~--~~v~~v~~---~~g~--~i~aD~vi~a~G~~ 307 (489)
+.+.+++. ||+++. ++.+.++..+++ +++.+|.. .+|+ .+.|+.||+|||..
T Consensus 172 L~~~a~~~~~gV~i~~-~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~ 232 (662)
T 3gyx_A 172 VAEAAKNALGQDRIIE-RIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGA 232 (662)
T ss_dssp HHHHHHHHHCTTTEEC-SEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred HHHHHHhcCCCcEEEE-ceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcc
Confidence 34445555 899998 889988876544 37877754 3554 58999999999953
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0032 Score=65.48 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=45.3
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCC---CCcEEEEEeC--CCc--EEEcC-EEEEccCCCCCCchhhhcCC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGS---DGRVAAVKLE--DGS--TIDAD-TIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~---~~~v~~v~~~--~g~--~i~aD-~vi~a~G~~p~~~~~~~~gl 318 (489)
.++...+++.++++++ ++.|++|.-++ ++++++|++. +|+ ++.|. .||+|+|.--...+|..+||
T Consensus 231 ayL~p~~~r~NL~V~t-~a~V~rIl~d~~~~~~ra~GV~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGI 303 (583)
T 3qvp_A 231 EWLLPNYQRPNLQVLT-GQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGI 303 (583)
T ss_dssp HHTTTTTTCTTEEEEC-SCEEEEEEEECSSSSCEEEEEEEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTB
T ss_pred HHHHHhhcCCCcEEEc-CCEEEEEEeccCCCCCEEEEEEEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCC
Confidence 3444455678999999 99999997543 5678888875 564 46776 79999997643344444443
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.005 Score=63.08 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=43.6
Q ss_pred HHhc-CcEEEEcCceEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEccCCCCCCchhhhcC
Q 011267 259 YQQN-GVKFVKVGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 259 l~~~-Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~--~g-----~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
.+++ ++++++ ++.|++|..++++ ++++|+.. +| .++.|+.||+|+|......+|..+|
T Consensus 231 a~~~~n~~i~~-~~~V~~i~~~~~g~~~~gV~~~~~~g~~~~~~~v~A~~VIlaaG~~~s~~lL~~Sg 297 (504)
T 1n4w_A 231 ALGTGKVTIQT-LHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELLVRAR 297 (504)
T ss_dssp HHHTTSEEEEE-SEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHhcCCcEEEe-CCEEEEEEECCCCCEEEEEEEeCCCCccceeEEEeeCEEEEccCCCCCHHHHHhcc
Confidence 3445 599999 9999999866434 78888874 56 3688999999999864446666655
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.0075 Score=61.81 Aligned_cols=62 Identities=10% Similarity=0.145 Sum_probs=44.8
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCCC-cEEEEEeC--CC-----cEEEcCEEEEccCCCCCCchhhhcC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLE--DG-----STIDADTIVIGIGAKPTVSPFERVG 317 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~--~g-----~~i~aD~vi~a~G~~p~~~~~~~~g 317 (489)
+....++.++++++ ++.|++|..++++ ++++|+.. +| .++.|+.||+|+|......+|..+|
T Consensus 233 l~~a~~~~n~~i~~-~~~v~~i~~~~~g~~~~gV~~~~~~g~~~~~~~~~A~~VIlaaGa~~sp~lL~~Sg 302 (507)
T 1coy_A 233 LAQAAATGKLTITT-LHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTSKLLVSMK 302 (507)
T ss_dssp HHHHHHTTCEEEEC-SEEEEEEEECSSSSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcEEEe-CCEEEEEEECCCCCEEEEEEEeCCCCcccccEEEEeCEEEEccCccCCHHHHHhcc
Confidence 33433444599999 9999999866544 68888874 45 3688999999999864446666655
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.016 Score=58.49 Aligned_cols=40 Identities=15% Similarity=0.305 Sum_probs=35.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
++.+||+|||+|++|+++|..|++.|. +|+++|+++..+.
T Consensus 18 ~~~~dv~iiG~G~~g~~~a~~l~~~g~---~v~~~e~~~~~Gg 57 (475)
T 3p1w_A 18 GEHYDVIILGTGLKECILSGLLSHYGK---KILVLDRNPYYGG 57 (475)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCG
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCCC---cEEEEeccCCCCC
Confidence 456899999999999999999999987 6999999987653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0075 Score=60.81 Aligned_cols=82 Identities=21% Similarity=0.111 Sum_probs=60.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.++++.|||.|.+|+-+|..|.++|.+|++.+..+.-. + ...+.|++.|++++. +....++
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~----~-----~~~~~L~~~gi~~~~-g~~~~~~--------- 68 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE----N-----PTAQSLLEEGIKVVC-GSHPLEL--------- 68 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG----C-----HHHHHHHHTTCEEEE-SCCCGGG---------
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC----C-----hHHHHHHhCCCEEEE-CCChHHh---------
Confidence 47899999999999999999999999999998765211 1 123467788999988 6431100
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
+. + .+|.||+++|..++.+.+
T Consensus 69 ---~~-~---~~d~vv~spgi~~~~p~~ 89 (451)
T 3lk7_A 69 ---LD-E---DFCYMIKNPGIPYNNPMV 89 (451)
T ss_dssp ---GG-S---CEEEEEECTTSCTTSHHH
T ss_pred ---hc-C---CCCEEEECCcCCCCChhH
Confidence 00 1 178999999998887654
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0078 Score=62.85 Aligned_cols=63 Identities=13% Similarity=0.231 Sum_probs=45.4
Q ss_pred HHHHHHhcCcEEEEcCceEEEEEeCCC---CcEEEEEeC--CCc--EEEc-CEEEEccCCCCCCchhhhcCC
Q 011267 255 YEQLYQQNGVKFVKVGASIKNLEAGSD---GRVAAVKLE--DGS--TIDA-DTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 255 l~~~l~~~Gv~~~~~~~~v~~i~~~~~---~~v~~v~~~--~g~--~i~a-D~vi~a~G~~p~~~~~~~~gl 318 (489)
+....++.|+++++ ++.|+++..+++ +++.+|+.. +|+ ++.| +.||+|+|......+|..+|+
T Consensus 237 l~~~~~~~nl~i~~-~~~v~~l~~~~~~~~~~~~GV~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGI 307 (587)
T 1gpe_A 237 LLPNYQRSNLEILT-GQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGI 307 (587)
T ss_dssp TTTTTTCTTEEEEE-SCEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTE
T ss_pred HHHhhcCCCcEEEc-CCEEEEEEECCCCCCCEEEEEEEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCC
Confidence 33344567999999 999999975432 477788764 564 5778 899999998755466666655
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0083 Score=61.24 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
|+|+|||+|+.|+-+|..|++.|.+|+++|+++++
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~ 36 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKP 36 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC---
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCC
Confidence 68999999999999999999999999999998765
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0084 Score=62.01 Aligned_cols=64 Identities=22% Similarity=0.356 Sum_probs=45.9
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--EEEcC-EEEEccCCCCCCchhhhcCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS--TIDAD-TIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~--~i~aD-~vi~a~G~~p~~~~~~~~gl 318 (489)
++....++.|+++++ ++.|++|..++++++.+|++.+ |+ ++.|+ .||+|+|......+|..+|+
T Consensus 214 ~l~~a~~~~~~~i~~-~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~i~A~k~VIlaaG~~~sp~lL~~SGi 283 (546)
T 2jbv_A 214 YIHPIVEQENFTLLT-GLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLMLSGI 283 (546)
T ss_dssp HTGGGTTCTTEEEEC-SCEEEEEEECTTSBEEEEEEESSTTSCEEEEEEEEEEEECSHHHHHHHHHHHTTE
T ss_pred HHHHHhcCCCcEEEe-CCEEEEEEECCCCeEEEEEEEECCCCcEEEEEeCccEEEecCccCCchhhhhcCC
Confidence 334444467999999 9999999865437788888744 53 68898 99999997433356666554
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.012 Score=56.46 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=59.2
Q ss_pred CCCcEEEECCCHHHHH-HHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 206 KAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e-~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++.|||.|-+|+. +|..|.++|.+|++.+..+.. + ..+.|++.|++++. +.....
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~------~-----~~~~L~~~gi~v~~-g~~~~~--------- 61 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYP------P-----MSTQLEALGIDVYE-GFDAAQ--------- 61 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCT------T-----HHHHHHHTTCEEEE-SCCGGG---------
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCc------H-----HHHHHHhCCCEEEC-CCCHHH---------
Confidence 3578999999999996 899999999999999876531 1 23457788999988 532100
Q ss_pred EEEEeCCCcEEEcCEEEEccCCCCCCchhh
Q 011267 285 AAVKLEDGSTIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 285 ~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
+.. -.+|.||++.|..|+.+.+.
T Consensus 62 ----l~~---~~~d~vV~Spgi~~~~p~~~ 84 (326)
T 3eag_A 62 ----LDE---FKADVYVIGNVAKRGMDVVE 84 (326)
T ss_dssp ----GGS---CCCSEEEECTTCCTTCHHHH
T ss_pred ----cCC---CCCCEEEECCCcCCCCHHHH
Confidence 000 14799999999998876543
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0061 Score=63.18 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeC---CC-CcEEEEEeCC--C-c--EEEc-CEEEEccCCCCCCchhhhcCC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAG---SD-GRVAAVKLED--G-S--TIDA-DTIVIGIGAKPTVSPFERVGL 318 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~---~~-~~v~~v~~~~--g-~--~i~a-D~vi~a~G~~p~~~~~~~~gl 318 (489)
.++...+++.++++++ ++.|++|.-+ ++ +++++|++.+ | + ++.| ..||+|.|..-...+|..+||
T Consensus 212 ayL~p~~~r~NL~Vlt-~a~V~rIl~~~~~~g~~rA~GVe~~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGI 286 (566)
T 3fim_B 212 AYLRPAQSRPNLSVLI-NAQVTKLVNSGTTNGLPAFRCVEYAEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGI 286 (566)
T ss_dssp HTHHHHTTCTTEEEES-SCEEEEEECCEEETTEEECCEEEEESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTE
T ss_pred HHhhhhccCCCeEEEC-CCEEEEEEeecCCCCCCEEEEEEEEECCCceEEEEEeeeEEEEecCCcCChHHHHhcCC
Confidence 4555556678999999 9999999854 13 5677787643 4 3 5677 789999996433245554444
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.024 Score=46.94 Aligned_cols=37 Identities=11% Similarity=0.271 Sum_probs=32.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+.+|+|||.|.-|...|..|.+.|+ +|+++|+++
T Consensus 4 ~~~~~~viIiG~G~~G~~la~~L~~~g~---~v~vid~~~ 40 (140)
T 3fwz_A 4 VDICNHALLVGYGRVGSLLGEKLLASDI---PLVVIETSR 40 (140)
T ss_dssp CCCCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEECCH
Confidence 3446789999999999999999999887 699999864
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.026 Score=47.52 Aligned_cols=37 Identities=22% Similarity=0.338 Sum_probs=31.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.....+|+|||+|.-|...|..|++.|+ +|+++++++
T Consensus 16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~---~V~vid~~~ 52 (155)
T 2g1u_A 16 KQKSKYIVIFGCGRLGSLIANLASSSGH---SVVVVDKNE 52 (155)
T ss_dssp -CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred ccCCCcEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 3456789999999999999999999876 799999764
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.017 Score=51.90 Aligned_cols=107 Identities=15% Similarity=0.231 Sum_probs=66.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|||||.+|...+..|.+.|.+|+++.+. +.+. +.++.++.+++++. +. +.
T Consensus 30 ~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~-------~~~~----l~~l~~~~~i~~i~-~~----~~-------- 85 (223)
T 3dfz_A 30 KGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPT-------VSAE----INEWEAKGQLRVKR-KK----VG-------- 85 (223)
T ss_dssp TTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSS-------CCHH----HHHHHHTTSCEEEC-SC----CC--------
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC-------CCHH----HHHHHHcCCcEEEE-CC----CC--------
Confidence 5789999999999999999999999999999764 2333 33444555677665 21 11
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCC----CCCC-CCCCeEEecccc
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDG----QFRT-RMPGIFAIGDVA 345 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~----~~~t-~~~~Iya~GD~a 345 (489)
.+.--.+|+||.|||.......+... .. .++.||- .+.+ ..|.++--||+.
T Consensus 86 -----~~dL~~adLVIaAT~d~~~N~~I~~~---ak-~gi~VNvvD~p~~~~f~~Paiv~rg~l~ 141 (223)
T 3dfz_A 86 -----EEDLLNVFFIVVATNDQAVNKFVKQH---IK-NDQLVNMASSFSDGNIQIPAQFSRGRLS 141 (223)
T ss_dssp -----GGGSSSCSEEEECCCCTHHHHHHHHH---SC-TTCEEEC-----CCSEECCEEEEETTEE
T ss_pred -----HhHhCCCCEEEECCCCHHHHHHHHHH---Hh-CCCEEEEeCCcccCeEEEeeEEEeCCEE
Confidence 01012489999999976443332222 11 2444432 2222 457777777665
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.059 Score=51.62 Aligned_cols=35 Identities=17% Similarity=0.119 Sum_probs=29.7
Q ss_pred CCCcEEEEcCchHHHH-HHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~-aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+++|.|||.|.+|++ +|+.|+++|+ +|++.|...
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~~G~---~V~~~D~~~ 38 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKEAGF---EVSGCDAKM 38 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred CCcEEEEEEECHHHHHHHHHHHHhCCC---EEEEEcCCC
Confidence 3568999999999997 7888899987 799988754
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.72 E-value=0.04 Score=46.22 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=30.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
.+.+|+|+|+|..|...+..|.+.|+ +|+++|++
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~---~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQ---NVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---CEEEEECC
Confidence 45689999999999999999999886 69999986
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=94.50 E-value=0.04 Score=56.10 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=34.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
...+|+|||+|++|+.+|..|.+.|.+|+++++.+++..
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg 70 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGG 70 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBT
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCC
Confidence 357899999999999999999999999999998876543
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.038 Score=54.90 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=32.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
++|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI 35 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 36899999999999999999999999999987654
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.044 Score=45.19 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=30.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++.+|+|+|+|.-|...|..|.+.|+ +|+++|+++
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~---~V~~id~~~ 39 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGK---KVLAVDKSK 39 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECCH
Confidence 34689999999999999999999987 699999754
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.043 Score=54.48 Aligned_cols=34 Identities=24% Similarity=0.168 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~ 35 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAGHEVEVFERLPIT 35 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCC
Confidence 6899999999999999999999999999998654
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=93.92 E-value=0.053 Score=52.40 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~ 37 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE 37 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 479999999999999999999999999999885
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.05 Score=54.09 Aligned_cols=34 Identities=24% Similarity=0.415 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+|+|||+|..|+-+|..|++.|.+|+++++++++
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~ 36 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL 36 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence 6899999999999999999999999999987654
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.065 Score=53.15 Aligned_cols=37 Identities=22% Similarity=0.348 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL 242 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~ 242 (489)
...+|+|||+|..|+-+|..|++.| .+|+++++.+++
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~ 42 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV 42 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence 4568999999999999999999999 899999987665
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=93.72 E-value=0.047 Score=54.52 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.++|+|||||+.|+.+|..|++.|.+|+++++.+
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 3689999999999999999999999999999875
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.054 Score=54.70 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~ 242 (489)
++|+|||||.+|+-+|..|++.|. +|+++++++++
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~ 39 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL 39 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence 579999999999999999999999 99999987654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.077 Score=43.32 Aligned_cols=33 Identities=18% Similarity=0.330 Sum_probs=29.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+|+|||+|..|...|..|.+.|+ +|+++|+++
T Consensus 5 m~i~IiG~G~iG~~~a~~L~~~g~---~v~~~d~~~ 37 (140)
T 1lss_A 5 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDK 37 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 579999999999999999999876 699998753
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.073 Score=51.95 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC-Ccc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE-NHL 242 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~-~~~ 242 (489)
...+|+|||+|+.|+-+|..|.+.|.+|+++++. +++
T Consensus 43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v 80 (376)
T 2e1m_A 43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV 80 (376)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence 3578999999999999999999999999999988 543
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=93.52 E-value=0.082 Score=55.19 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
...+.+.+.+.++..|.++++ ++.|++|..+++ +++.+|++.+|+++.||.||+.....|.
T Consensus 377 ~g~L~qaL~r~~~~~Gg~i~l-~~~V~~I~~~~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~ 438 (650)
T 1vg0_A 377 QGELPQCFCRMCAVFGGIYCL-RHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSE 438 (650)
T ss_dssp TTHHHHHHHHHHHHTTCEEES-SCCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCT
T ss_pred hhHHHHHHHHHHHHcCCEEEe-CCEeeEEEEeCCCCeEEEEEeCCCCEEEcCEEEEChhhcCH
Confidence 347778888999999999999 999999976543 7888888888999999999998777664
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=93.46 E-value=0.068 Score=54.76 Aligned_cols=61 Identities=28% Similarity=0.366 Sum_probs=46.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh-----------------hCHHHHHHHHHHHHhcCcEEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------FTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-----------------~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
..+|+|||+|..|+-+|..|++.|.+|+++++++++..+. +... ...+.+.+++.|++...
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~-~~~~~~l~~~lgl~~~~ 81 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPT-QNRILRLAKELGLETYK 81 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTT-CHHHHHHHHHTTCCEEE
T ss_pred CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCC-cHHHHHHHHHcCCccee
Confidence 4579999999999999999999999999999987653221 1111 24566778888987654
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.2 Score=41.13 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAA 286 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~ 286 (489)
.++++|+|.|.+|..+|..|.+.|.+|+++++.+ +.. +.+++.|+.++. +.. .+..
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~---------~~~----~~~~~~g~~~i~-gd~-------~~~~--- 62 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR---------TRV----DELRERGVRAVL-GNA-------ANEE--- 62 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH---------HHH----HHHHHTTCEEEE-SCT-------TSHH---
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH---------HHH----HHHHHcCCCEEE-CCC-------CCHH---
Confidence 5689999999999999999999999999998763 211 234457888776 310 0000
Q ss_pred EEeCCCcEEEcCEEEEccCCCC
Q 011267 287 VKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 287 v~~~~g~~i~aD~vi~a~G~~p 308 (489)
+...-+ .-.+|.||++++...
T Consensus 63 ~l~~a~-i~~ad~vi~~~~~~~ 83 (140)
T 3fwz_A 63 IMQLAH-LECAKWLILTIPNGY 83 (140)
T ss_dssp HHHHTT-GGGCSEEEECCSCHH
T ss_pred HHHhcC-cccCCEEEEECCChH
Confidence 000011 126899999988643
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.075 Score=53.89 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=34.1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
....+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~ 46 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP 46 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence 34678999999999999999999999999999988654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=93.39 E-value=0.072 Score=41.99 Aligned_cols=35 Identities=11% Similarity=0.201 Sum_probs=29.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+++|+|+|+|..|..++..|.+.|. .+|+++++.+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~--~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSN--YSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSS--EEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC--ceEEEEeCCH
Confidence 4579999999999999999999871 2798888753
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.067 Score=54.74 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=31.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH 241 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~ 241 (489)
..+|+|||+|..|+-+|..|.+.| .+|++++++++
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~r 43 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDR 43 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCC
Confidence 357999999999999999999999 99999997753
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.073 Score=51.99 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~ 36 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 369999999999999999999999999999865
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=93.30 E-value=0.45 Score=45.18 Aligned_cols=86 Identities=13% Similarity=0.154 Sum_probs=55.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE-cCceEEEEEeCCCCcEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK-VGASIKNLEAGSDGRVAA 286 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~-~~~~v~~i~~~~~~~v~~ 286 (489)
.++.|||+|.+|.-+|..|.+.|.+|+++.|.+ . +.+++.|+.+.. +..... +.+ + .
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~Gl~~~~~~~g~~~-~~~-----~-~ 60 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD--Y-------------ETVKAKGIRIRSATLGDYT-FRP-----A-A 60 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT--H-------------HHHHHHCEEEEETTTCCEE-ECC-----S-C
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh--H-------------HHHHhCCcEEeecCCCcEE-Eee-----e-e
Confidence 479999999999999999999999999998753 0 235566766542 011111 100 0 1
Q ss_pred EEeCCC-cEE-EcCEEEEccCCCCCCchhhhc
Q 011267 287 VKLEDG-STI-DADTIVIGIGAKPTVSPFERV 316 (489)
Q Consensus 287 v~~~~g-~~i-~aD~vi~a~G~~p~~~~~~~~ 316 (489)
+. .+- +.. .+|.||+|+-.....+.++.+
T Consensus 61 ~~-~~~~~~~~~~DlVilavK~~~~~~~l~~l 91 (320)
T 3i83_A 61 VV-RSAAELETKPDCTLLCIKVVEGADRVGLL 91 (320)
T ss_dssp EE-SCGGGCSSCCSEEEECCCCCTTCCHHHHH
T ss_pred eE-CCHHHcCCCCCEEEEecCCCChHHHHHHH
Confidence 11 221 222 689999998877665655554
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.26 E-value=0.057 Score=54.97 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=57.3
Q ss_pred cCCCcEEEECCCHHHHH-HHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e-~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
...+++.|||-|-+|+- +|..|.++|.+|+..+.... + ..+.|++.|++++. +.... .
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~-------~-----~~~~l~~~gi~~~~-g~~~~--------~ 78 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPN-------S-----VTQHLTALGAQIYF-HHRPE--------N 78 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCC-------H-----HHHHHHHTTCEEES-SCCGG--------G
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCC-------H-----HHHHHHHCCCEEEC-CCCHH--------H
Confidence 34689999999999996 89999999999999986532 1 12457888999987 52110 0
Q ss_pred EEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 284 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 284 v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
+ -.+|.||++.|..++.+.+
T Consensus 79 -----~-----~~~d~vV~Spgi~~~~p~~ 98 (494)
T 4hv4_A 79 -----V-----LDASVVVVSTAISADNPEI 98 (494)
T ss_dssp -----G-----TTCSEEEECTTSCTTCHHH
T ss_pred -----c-----CCCCEEEECCCCCCCCHHH
Confidence 1 1379999999998876553
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.077 Score=51.74 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=31.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..+|+|||+|.+|+.+|..|++.|.+|+++++..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 4579999999999999999999999999999873
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.088 Score=51.38 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=30.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
++|+|||+|..|+++|..+++.|.+|.++++.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence 469999999999999999999999999999754
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.084 Score=51.16 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
...|+|||+|.+|+-+|..|++.|.+|+++++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~ 38 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 457999999999999999999999999999975
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.078 Score=51.53 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
..++|+|||+|.+|+-+|..|+ .|.+|+++++.+.+
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~~~ 43 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AHGRVVVLEREAQP 43 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSSST
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCCCc
Confidence 3578999999999999999999 59999999988644
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.13 E-value=0.032 Score=55.95 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=57.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.++++.|||.|.+|+.+|..|.++|.+|+..+....... . ..++ .|+++.. +... . .
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~-----~------~~l~-~G~~~~~-g~~~---~-~------ 60 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPG-----L------DKLP-EAVERHT-GSLN---D-E------ 60 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTT-----G------GGSC-TTSCEEE-SSCC---H-H------
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcch-----h------HHhh-CCCEEEE-CCCc---H-H------
Confidence 468899999999999999999999999999987754221 0 3356 7999887 5421 0 0
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhh
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFE 314 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~ 314 (489)
.+ . .+|.||+++|..|+.+.+.
T Consensus 61 ~~------~-~~d~vV~s~gi~~~~p~~~ 82 (439)
T 2x5o_A 61 WL------M-AADLIVASPGIALAHPSLS 82 (439)
T ss_dssp HH------H-TCSEEEECTTSCTTCHHHH
T ss_pred Hh------c-cCCEEEeCCCCCCCCHHHH
Confidence 00 1 4789999999988765543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.1 Score=46.84 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=32.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+.++|+|||||..|...+..|.+.|. +|+||+++.
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA---~VtVvap~~ 64 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGA---AITVVAPTV 64 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCC---CEEEECSSC
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEECCCC
Confidence 3567899999999999999999999875 799999864
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.085 Score=53.25 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=31.9
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
....+|+|||+|..|+-+|..|++.|.+|+++++.++
T Consensus 14 ~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~ 50 (478)
T 2ivd_A 14 TTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR 50 (478)
T ss_dssp ---CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 3467899999999999999999999999999998754
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.12 Score=44.78 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~ 87 (489)
....+|+|||.|..|...|..|.+. |+ +|+++|+++
T Consensus 37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~---~V~vid~~~ 73 (183)
T 3c85_A 37 PGHAQVLILGMGRIGTGAYDELRARYGK---ISLGIEIRE 73 (183)
T ss_dssp CTTCSEEEECCSHHHHHHHHHHHHHHCS---CEEEEESCH
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhccCC---eEEEEECCH
Confidence 3456899999999999999999998 87 699998764
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.11 Score=52.94 Aligned_cols=37 Identities=30% Similarity=0.378 Sum_probs=33.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
...+|+|||+|..|+-+|..|.+.|.+|+++++.+++
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 48 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA 48 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence 4578999999999999999999999999999998765
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.61 E-value=0.31 Score=39.87 Aligned_cols=33 Identities=9% Similarity=0.083 Sum_probs=30.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.++++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 468999999999999999999999999999875
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=92.54 E-value=0.18 Score=42.22 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
...++++|+|+|.+|..+|..|.+.|.+|+++++.+.
T Consensus 17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~ 53 (155)
T 2g1u_A 17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY 53 (155)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 4578999999999999999999999999999987653
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=92.45 E-value=0.11 Score=50.83 Aligned_cols=35 Identities=26% Similarity=0.463 Sum_probs=32.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
.+++|||+|.+|+.+|..|.+.|.+|+++++.+++
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 38 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI 38 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence 47999999999999999999999999999987654
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.12 Score=51.77 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.8
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
.+|+|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ 40 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV 40 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 57999999999999999999999999999987543
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=92.24 E-value=0.12 Score=51.39 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENH 241 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~ 241 (489)
...|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus 6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~ 41 (438)
T 3dje_A 6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV 41 (438)
T ss_dssp TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 4579999999999999999999999 9999998754
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=92.20 E-value=0.1 Score=51.18 Aligned_cols=33 Identities=18% Similarity=0.238 Sum_probs=30.8
Q ss_pred CcEEEECCCHHHHHHHHHHHh-CC-CcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG-WK-LDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~-~g-~~V~lv~~~~ 240 (489)
.+|+|||+|..|+.+|..|++ .| .+|+++++.+
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999999875
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.14 Score=50.40 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
..+++|||+|+.|+-+|..|++.|.+|+++++.+++
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~ 64 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHI 64 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCC
Confidence 457999999999999999999999999999987654
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.2 Score=50.26 Aligned_cols=38 Identities=11% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
..+||||||||++|++||..|++.|+ +|+|+|+++..+
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~~G~---~V~vlE~~~~~G 47 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSVDGK---KVLHIDKQDHYG 47 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCCCC
Confidence 56899999999999999999999987 699999998765
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.13 E-value=0.12 Score=50.90 Aligned_cols=36 Identities=19% Similarity=0.388 Sum_probs=32.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~~~ 242 (489)
..+++|||+|..|+-+|..|++. |.+|+++++++++
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~ 43 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI 43 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 46899999999999999999998 9999999988654
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.29 Score=49.54 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=33.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
.+||+|||||++||+||..|++.|+ +|+|+|+++...
T Consensus 39 ~~~v~iiGaG~aGl~aA~~l~~~g~---~v~v~E~~~~~G 75 (495)
T 2vvm_A 39 PWDVIVIGGGYCGLTATRDLTVAGF---KTLLLEARDRIG 75 (495)
T ss_dssp CEEEEEECCBHHHHHHHHHHHHTTC---CEEEECSSSBSB
T ss_pred CCCEEEECCcHHHHHHHHHHHHCCC---CEEEEeCCCCCC
Confidence 3799999999999999999999986 799999987654
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.15 Score=41.72 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=29.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+|+|+|+|..|...+..|.+.|. +|+++++++
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~---~v~~~d~~~ 39 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINE 39 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CCEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 4579999999999999999999886 688988753
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=91.99 E-value=0.37 Score=50.26 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=35.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
.+++||+|||+|..|...|..|.+.|. +|.+||++++.+
T Consensus 6 ~~~~D~~i~GtGl~~~~~a~~~~~~g~---~vl~id~~~~~g 44 (650)
T 1vg0_A 6 PSDFDVIVIGTGLPESIIAAACSRSGQ---RVLHVDSRSYYG 44 (650)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred CCcCCEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCccc
Confidence 347999999999999999999999987 699999999865
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=0.15 Score=54.21 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=31.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
..|+|||||..|+-+|..|++.|.+|+++++.+.
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~ 298 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRGAVVTLYCADAQ 298 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTTCCEEEEESSSS
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCCc
Confidence 5799999999999999999999999999998643
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.16 Score=53.95 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=31.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.+|+|||||..|+-+|..|++.|.+|+++++.+
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~ 305 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRGWQVTLYCADE 305 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 579999999999999999999999999999864
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=91.63 E-value=0.16 Score=49.51 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+++|||+|..|+-+|..|++.|.+|+++++.+++
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~ 36 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 5899999999999999999999999999987643
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.59 E-value=0.43 Score=45.08 Aligned_cols=75 Identities=20% Similarity=0.303 Sum_probs=48.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
.+++|||+|.+|.-+|..|. .|.+|+++.|.+. -.+.+++.|+.+.. .... ... .+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~-------------~~~~l~~~G~~~~~-~~~~-~~~--------~~ 58 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQE-------------QAAAIQSEGIRLYK-GGEE-FRA--------DC 58 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHH-------------HHHHHHHHCEEEEE-TTEE-EEE--------CC
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHH-------------HHHHHHhCCceEec-CCCe-ecc--------cc
Confidence 47999999999999999999 9999999987631 11335566887765 3221 111 11
Q ss_pred EeCCCcEEEcCEEEEccCC
Q 011267 288 KLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 288 ~~~~g~~i~aD~vi~a~G~ 306 (489)
.......-++|.||+|+-.
T Consensus 59 ~~~~~~~~~~D~vilavK~ 77 (307)
T 3ego_A 59 SADTSINSDFDLLVVTVKQ 77 (307)
T ss_dssp EEESSCCSCCSEEEECCCG
T ss_pred cccccccCCCCEEEEEeCH
Confidence 1111111258999998654
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.11 Score=50.04 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCC------CcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK------LDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g------~~V~lv~~~~ 240 (489)
.|+|||+|.+|+-+|..|++.| .+|+++++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 6899999999999999999998 8999999874
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=91.51 E-value=0.21 Score=47.07 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=31.7
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+..++|.|||+|.-|...|..|++.|+ +|+++|.++
T Consensus 12 ~~~~~~I~VIG~G~mG~~iA~~la~~G~---~V~~~d~~~ 48 (302)
T 1f0y_A 12 KIIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTE 48 (302)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred cccCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 3445689999999999999999999987 799998764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=91.43 E-value=0.1 Score=48.42 Aligned_cols=37 Identities=19% Similarity=0.411 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+.++|+|||||-.|...+..|.+.|. +|+||+++..
T Consensus 11 l~~k~VLVVGgG~va~rka~~Ll~~Ga---~VtViap~~~ 47 (274)
T 1kyq_A 11 LKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDLH 47 (274)
T ss_dssp CTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEEC
T ss_pred cCCCEEEEECCcHHHHHHHHHHHhCCC---EEEEEcCCCC
Confidence 456889999999999999999999976 7999998643
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.3 Score=46.25 Aligned_cols=85 Identities=16% Similarity=0.158 Sum_probs=52.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
.++.|||+|.+|.-+|..|.+.|.+|+++.|.+ . +.+++.|+.+.. ...-..+.+ + .+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~--~-------------~~i~~~g~~~~~-~~g~~~~~~-----~-~~ 60 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD--Y-------------EAIAGNGLKVFS-INGDFTLPH-----V-KG 60 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT--H-------------HHHHHTCEEEEE-TTCCEEESC-----C-CE
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc--H-------------HHHHhCCCEEEc-CCCeEEEee-----c-ee
Confidence 479999999999999999999999999998753 0 335667877653 211011100 0 01
Q ss_pred EeCCCc-EEEcCEEEEccCCCCCCchhhh
Q 011267 288 KLEDGS-TIDADTIVIGIGAKPTVSPFER 315 (489)
Q Consensus 288 ~~~~g~-~i~aD~vi~a~G~~p~~~~~~~ 315 (489)
. .+-+ .-.+|.||+|+-.....+.++.
T Consensus 61 ~-~~~~~~~~~D~vilavk~~~~~~~l~~ 88 (312)
T 3hn2_A 61 Y-RAPEEIGPMDLVLVGLKTFANSRYEEL 88 (312)
T ss_dssp E-SCHHHHCCCSEEEECCCGGGGGGHHHH
T ss_pred e-cCHHHcCCCCEEEEecCCCCcHHHHHH
Confidence 1 1111 1258999999776554444444
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.16 Score=48.50 Aligned_cols=66 Identities=15% Similarity=0.162 Sum_probs=45.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCcEEEEccCCcchhhhh------C-HHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVG--WKLDTTIIFPENHLLQRLF------T-PSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~l~~~~------~-~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
...|+|||+|+.|+-+|..|++ .|.+|+++++.+.+-.... + ..+...+.+.+++.|+++.. +...
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~~~~~~~~e~Gv~~~~-~~~~ 139 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYED-EGDY 139 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEETTTHHHHHHTTCCCEE-CSSE
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHHHHHHHHHHcCCEEEE-CCcc
Confidence 4579999999999999999964 6999999998764421110 0 01112334556778988887 5443
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.15 Score=51.48 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENH 241 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~ 241 (489)
.+|+|||+|..|+-+|..|.+.| .+|+++++.++
T Consensus 5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~ 40 (475)
T 3lov_A 5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGER 40 (475)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSS
T ss_pred ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 57999999999999999999999 99999998643
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=91.26 E-value=0.16 Score=50.80 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.++|+|||.|.+|+++|+.|+++|+ +|++.|....
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~~G~---~v~~~D~~~~ 39 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT 39 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHTTTC---CCEEEESSSS
T ss_pred CCCEEEEEeecHHHHHHHHHHHhCCC---EEEEEECCCC
Confidence 34689999999999999999999987 6999987654
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.2 Score=51.28 Aligned_cols=80 Identities=20% Similarity=0.136 Sum_probs=57.9
Q ss_pred cCCCcEEEECCCHHHHH-HHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 205 EKAKKVVVVGGGYIGME-VAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e-~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
...+++.+||-|-+|+- +|..|.++|.+|+..+.... ++ ..+.|++.|++++. +.....+
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~------~~-----~~~~L~~~gi~~~~-G~~~~~~------- 77 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIY------PP-----MSTQLEQAGVTIEE-GYLIAHL------- 77 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC------TT-----HHHHHHHTTCEEEE-SCCGGGG-------
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCC------cH-----HHHHHHHCCCEEEC-CCCHHHc-------
Confidence 46789999999999997 68889999999999987642 11 23457788999988 5311000
Q ss_pred EEEEEeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 284 VAAVKLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 284 v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
.-.+|.||++.|..++.+.+
T Consensus 78 ----------~~~~d~vV~Spgi~~~~p~l 97 (524)
T 3hn7_A 78 ----------QPAPDLVVVGNAMKRGMDVI 97 (524)
T ss_dssp ----------CSCCSEEEECTTCCTTSHHH
T ss_pred ----------CCCCCEEEECCCcCCCCHHH
Confidence 01479999999998876654
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.22 E-value=0.22 Score=48.24 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=32.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+++|+|||||..|..+++.+++.|+ +++++|.++..+
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~~G~---~vv~vd~~~~~~ 37 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKKAGM---KVVLVDKNPQAL 37 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCTTCT
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCCCCh
Confidence 5789999999999999999999998 799999877644
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=91.05 E-value=0.2 Score=51.62 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHh---CCCcEEEEccCC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVG---WKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~---~g~~V~lv~~~~ 240 (489)
...+|+|||||..|+-+|..|++ .|.+|+++++.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 35689999999999999999999 999999999864
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.22 Score=48.21 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=34.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.....+|||+|+|.+|..+|+.|...|.+ +|+++|+....
T Consensus 189 ~l~~~kVVv~GAGaAG~~iAkll~~~G~~--~I~v~Dr~Gli 228 (388)
T 1vl6_A 189 KIEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKGIL 228 (388)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTEEC
T ss_pred CCCCcEEEEECCCHHHHHHHHHHHhCCCC--eEEEEECCCcc
Confidence 34678999999999999999999999853 89999998443
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.23 Score=48.19 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=33.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.....+|||+|+|.||+.+|+.|...|.+ +|+++|+..
T Consensus 185 ~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~--~I~v~D~~G 222 (398)
T 2a9f_A 185 SLDEVSIVVNGGGSAGLSITRKLLAAGAT--KVTVVDKFG 222 (398)
T ss_dssp CTTSCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTE
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHcCCC--eEEEEECCC
Confidence 34567999999999999999999999863 899999875
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=90.78 E-value=0.31 Score=40.64 Aligned_cols=33 Identities=12% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 468999999999999999999999999999875
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.75 E-value=0.27 Score=46.37 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=29.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.++.|||+|.+|.-+|..|.+.|.+|+++.+.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 47999999999999999999999999999765
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=90.74 E-value=0.23 Score=52.50 Aligned_cols=36 Identities=25% Similarity=0.518 Sum_probs=32.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
..++|+|||+|..|+.+|..|.+.|.+|+++++.++
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~ 141 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 141 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 457899999999999999999999999999997653
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=90.73 E-value=0.4 Score=45.50 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=29.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
...++.|||+|.+|.-+|..|.+.|.+|+++ ++
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~ 50 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI-AR 50 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CC
T ss_pred cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-Ec
Confidence 4678999999999999999999999999998 54
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=90.72 E-value=0.29 Score=50.60 Aligned_cols=35 Identities=26% Similarity=0.399 Sum_probs=31.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..-.|+|||||..|+-+|..|++.|.+|.++++.+
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~~G~~V~LlEk~d 51 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMND 51 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEECCC
Confidence 34579999999999999999999999999999874
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=90.69 E-value=0.24 Score=53.76 Aligned_cols=35 Identities=23% Similarity=0.502 Sum_probs=31.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
.++|+|||+|+.|+.+|..|.+.|.+|+++++.++
T Consensus 278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~ 312 (852)
T 2xag_A 278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR 312 (852)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCc
Confidence 46899999999999999999999999999997653
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.38 Score=45.57 Aligned_cols=39 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
..++|.|||+|..|.-+|..++..|.+|++++..+..+.
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~ 43 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQIT 43 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHH
Confidence 357899999999999999999999999999998765544
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=90.63 E-value=0.2 Score=44.62 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=29.0
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|+|||+|.-|...|..|.+.|+ +|+++|+++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~---~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY---GVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC---CEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 69999999999999999999886 699999764
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=90.53 E-value=0.16 Score=50.64 Aligned_cols=38 Identities=13% Similarity=0.306 Sum_probs=34.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+.+||+|||+|++|+++|..|++.|. +|+++|+++..+
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~~g~---~v~~~e~~~~~g 42 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSVNGK---KVLHMDRNPYYG 42 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSC
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCcc
Confidence 46899999999999999999999987 699999987654
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.25 Score=49.50 Aligned_cols=133 Identities=14% Similarity=0.203 Sum_probs=78.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+.++|+|||.|.+|+++|+.|+++|+ +|++.|..+.. . ....+.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~~G~---~V~~~D~~~~~---~------------------------------~~~~~~ 51 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAKLGA---IVTVNDGKPFD---E------------------------------NPTAQS 51 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHHTTC---EEEEEESSCGG---G------------------------------CHHHHH
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCC---EEEEEeCCccc---C------------------------------ChHHHH
Confidence 46799999999999999999999987 79999875420 0 011345
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCc
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKK 209 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~ 209 (489)
+++.|+++..+... +. + + ++ .+|.+|+++|..+. .|......-.++..+... +-+.. +...+-
T Consensus 52 L~~~gi~~~~g~~~-----~~--~-~-~~---~~d~vv~spgi~~~-~p~~~~a~~~gi~v~~~~---e~~~~-~~~~~~ 114 (451)
T 3lk7_A 52 LLEEGIKVVCGSHP-----LE--L-L-DE---DFCYMIKNPGIPYN-NPMVKKALEKQIPVLTEV---ELAYL-VSESQL 114 (451)
T ss_dssp HHHTTCEEEESCCC-----GG--G-G-GS---CEEEEEECTTSCTT-SHHHHHHHHTTCCEECHH---HHHHH-HCCSEE
T ss_pred HHhCCCEEEECCCh-----HH--h-h-cC---CCCEEEECCcCCCC-ChhHHHHHHCCCcEEeHH---HHHHH-hcCCCE
Confidence 67789988876431 10 0 0 00 27899999997654 232111111233333322 22222 223344
Q ss_pred EEEECC-C--HHHHHHHHHHHhCCCcEEE
Q 011267 210 VVVVGG-G--YIGMEVAAAAVGWKLDTTI 235 (489)
Q Consensus 210 vvViG~-G--~~g~e~A~~l~~~g~~V~l 235 (489)
+.|-|+ | -+...++..|...|.++.+
T Consensus 115 IaVTGTnGKTTTt~ml~~iL~~~g~~~~~ 143 (451)
T 3lk7_A 115 IGITGSNGKTTTTTMIAEVLNAGGQRGLL 143 (451)
T ss_dssp EEEECSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 555554 2 3445567777888877644
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=90.14 E-value=0.27 Score=49.98 Aligned_cols=127 Identities=18% Similarity=0.248 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCchHHHH-HHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 49 NENREFVIVGGGNAAGY-AARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~-aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
...++|.|||-|-+|++ +|+.|+++|+ +|++.|.... ...
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~~G~---~V~~~D~~~~------------------------------------~~~ 60 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLANEGY---QISGSDLAPN------------------------------------SVT 60 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHHTTC---EEEEECSSCC------------------------------------HHH
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHhCCC---eEEEEECCCC------------------------------------HHH
Confidence 34578999999999997 6999999987 7998875421 012
Q ss_pred hHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCC
Q 011267 128 EWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKA 207 (489)
Q Consensus 128 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~ 207 (489)
+.+++.|+++..+.. .+. + -.+|.+|+.+|..+. -|......-.++..+... +-+...+ ..
T Consensus 61 ~~l~~~gi~~~~g~~-----~~~----~-----~~~d~vV~Spgi~~~-~p~~~~a~~~gi~v~~~~---e~l~~~~-~~ 121 (494)
T 4hv4_A 61 QHLTALGAQIYFHHR-----PEN----V-----LDASVVVVSTAISAD-NPEIVAAREARIPVIRRA---EMLAELM-RY 121 (494)
T ss_dssp HHHHHTTCEEESSCC-----GGG----G-----TTCSEEEECTTSCTT-CHHHHHHHHTTCCEEEHH---HHHHHHH-TT
T ss_pred HHHHHCCCEEECCCC-----HHH----c-----CCCCEEEECCCCCCC-CHHHHHHHHCCCCEEcHH---HHHHHHh-cC
Confidence 345677888887621 111 1 137899999997653 232111111233333322 2222222 23
Q ss_pred Cc-EEEECC-C--HHHHHHHHHHHhCCCcE
Q 011267 208 KK-VVVVGG-G--YIGMEVAAAAVGWKLDT 233 (489)
Q Consensus 208 ~~-vvViG~-G--~~g~e~A~~l~~~g~~V 233 (489)
++ +.|-|+ | -+...++..|...|.+.
T Consensus 122 ~~~IaVTGTnGKTTTt~ml~~iL~~~g~~~ 151 (494)
T 4hv4_A 122 RHGIAVAGTHGKTTTTAMLSSIYAEAGLDP 151 (494)
T ss_dssp SEEEEEECSSSHHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEecCCChHHHHHHHHHHHHhcCCCC
Confidence 33 555553 2 34455666777777653
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=0.32 Score=49.26 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=32.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL 242 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~ 242 (489)
...+++|||+|+.|+-+|..|.+.| .+|+++++.+++
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~ 45 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTP 45 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSS
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 3568999999999999999999998 799999988654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.94 E-value=0.37 Score=39.09 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=29.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
..+++|+|+|.+|..+|..|.+.|.+|+++++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 357999999999999999999999999999764
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.17 Score=50.61 Aligned_cols=31 Identities=26% Similarity=0.371 Sum_probs=29.6
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC-CcEEEEcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFP 238 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~ 238 (489)
.+|+|||+|..|+.+|..|++.| .+|+++++
T Consensus 24 ~dVvIIGgGiaGls~A~~La~~G~~~V~vlE~ 55 (448)
T 3axb_A 24 FDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDA 55 (448)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCSCEEEEES
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 47999999999999999999999 99999998
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=89.67 E-value=0.32 Score=44.44 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=32.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+|+|||+|-.|..+|..|++.|. ++|+|+|.+..
T Consensus 30 ~~~~VlVvG~Gg~G~~va~~La~~Gv--~~i~lvD~d~v 66 (249)
T 1jw9_B 30 KDSRVLIVGLGGLGCAASQYLASAGV--GNLTLLDFDTV 66 (249)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred hCCeEEEEeeCHHHHHHHHHHHHcCC--CeEEEEcCCCc
Confidence 35689999999999999999999986 48999998753
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.32 Score=38.04 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=29.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-CcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~ 239 (489)
.++++|+|+|.+|..++..|.+.| .+|+++.+.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 468999999999999999999999 889888775
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.38 Score=49.81 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
..+|+|||+|..|+.+|..|++.|.+|+++++.+.+
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~ 161 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIP 161 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 458999999999999999999999999999987643
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=89.36 E-value=0.56 Score=44.84 Aligned_cols=77 Identities=16% Similarity=0.248 Sum_probs=49.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
.++.|||+|.+|.-+|..|.+.|.+|+++.|.+ . .+.+++.|+.+.. ... . .... + .+
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~---------~-----~~~~~~~g~~~~~-~~~-~-~~~~----~-~~ 61 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLALAGEAINVLARGA---------T-----LQALQTAGLRLTE-DGA-T-HTLP----V-RA 61 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH---------H-----HHHHHHTCEEEEE-TTE-E-EEEC----C-EE
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH---------H-----HHHHHHCCCEEec-CCC-e-EEEe----e-eE
Confidence 579999999999999999999999999987531 1 1235667877654 211 1 1100 0 11
Q ss_pred EeCCC-cEEEcCEEEEccCCC
Q 011267 288 KLEDG-STIDADTIVIGIGAK 307 (489)
Q Consensus 288 ~~~~g-~~i~aD~vi~a~G~~ 307 (489)
..+- ..-.+|.||+|+-..
T Consensus 62 -~~~~~~~~~~D~Vilavk~~ 81 (335)
T 3ghy_A 62 -THDAAALGEQDVVIVAVKAP 81 (335)
T ss_dssp -ESCHHHHCCCSEEEECCCHH
T ss_pred -ECCHHHcCCCCEEEEeCCch
Confidence 1121 112589999998653
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=89.18 E-value=0.42 Score=38.89 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.2
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.++++|+|+|.+|..++..|.+.|.+|+++++.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 568999999999999999999999999998765
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.15 E-value=0.43 Score=46.71 Aligned_cols=35 Identities=17% Similarity=0.139 Sum_probs=30.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+|+|||+|.+|+.+|..++..|. +|+++|..+.
T Consensus 190 ~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~~ 224 (405)
T 4dio_A 190 AAKIFVMGAGVAGLQAIATARRLGA---VVSATDVRPA 224 (405)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSTT
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence 4689999999999999999999876 7999887653
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=88.99 E-value=0.46 Score=45.05 Aligned_cols=37 Identities=11% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
.++..+|.|||+|..|.+.|..|++.|. .+|+++|..
T Consensus 5 ~~~~~kv~ViGaG~vG~~ia~~l~~~g~--~~v~l~D~~ 41 (315)
T 3tl2_A 5 TIKRKKVSVIGAGFTGATTAFLLAQKEL--ADVVLVDIP 41 (315)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCG
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEecc
Confidence 3456789999999999999999999876 479999875
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=88.93 E-value=0.46 Score=44.23 Aligned_cols=35 Identities=14% Similarity=0.148 Sum_probs=30.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.++|.|||+|.-|...|..|++.|+ +|+++|.++
T Consensus 3 ~~~kV~VIGaG~mG~~iA~~la~~G~---~V~l~d~~~ 37 (283)
T 4e12_A 3 GITNVTVLGTGVLGSQIAFQTAFHGF---AVTAYDINT 37 (283)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC---eEEEEeCCH
Confidence 35689999999999999999999987 799988764
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.90 E-value=0.44 Score=45.26 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=31.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++.+|+|||+|..|.++|..|...+. -.+|+++|.++
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~~~~-~~ev~L~Di~~ 42 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFK 42 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 34689999999999999999999876 55899999764
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=88.68 E-value=0.37 Score=46.60 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
|.+++.+|.|||+|.-|.+.|..|++.|+ +|+++++++
T Consensus 25 m~~~~mkI~VIGaG~mG~alA~~La~~G~---~V~l~~r~~ 62 (356)
T 3k96_A 25 MEPFKHPIAILGAGSWGTALALVLARKGQ---KVRLWSYES 62 (356)
T ss_dssp --CCCSCEEEECCSHHHHHHHHHHHTTTC---CEEEECSCH
T ss_pred ccccCCeEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence 33445689999999999999999999986 699998864
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=88.59 E-value=0.51 Score=44.91 Aligned_cols=38 Identities=11% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.|++.+|.|||+|..|.+.|..|...+. . +|+|+|..+
T Consensus 4 ~m~~~kI~viGaG~vG~~~a~~l~~~~~-~-~v~L~Di~~ 41 (324)
T 3gvi_A 4 SMARNKIALIGSGMIGGTLAHLAGLKEL-G-DVVLFDIAE 41 (324)
T ss_dssp --CCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred CCcCCEEEEECCCHHHHHHHHHHHhCCC-C-eEEEEeCCc
Confidence 3556789999999999999999999886 3 899998754
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=0.53 Score=44.84 Aligned_cols=36 Identities=14% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
...+|.|||+|..|.++|..|+..+. -.+|+++|..
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~~~~-~~~l~l~D~~ 39 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALINQGI-TDELVVIDVN 39 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-CceEEEEecc
Confidence 45689999999999999999999886 4589999874
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=88.28 E-value=0.33 Score=44.89 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+++++|||+|-+|...+..|.+.|.+|+++.+.
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 5789999999999999999999999999999865
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=88.12 E-value=0.7 Score=42.99 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=33.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
-++|.|||+|.+|..+|..++..|.+|+++++.+..+.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~ 41 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALD 41 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHH
Confidence 46899999999999999999999999999988764443
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=0.48 Score=47.61 Aligned_cols=36 Identities=28% Similarity=0.461 Sum_probs=32.0
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~ 242 (489)
..+++|||+|..|+-+|..|.+.|. +|+++++.+++
T Consensus 4 ~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~ 40 (472)
T 1b37_A 4 GPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHI 40 (472)
T ss_dssp -CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 4579999999999999999999998 89999987654
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=88.01 E-value=0.46 Score=46.11 Aligned_cols=35 Identities=17% Similarity=0.070 Sum_probs=30.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+|+|||+|..|+.+|+.++..|. +|+++|+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa---~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGA---KTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 35689999999999999999999986 799998764
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=87.95 E-value=0.64 Score=44.55 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 49 ~~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+++.+|+|||+ |..|.++|..+...|. ..+|+++|..
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~-~~evvLiDi~ 43 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRL-TPNLCLYDPF 43 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTC-CSCEEEECSC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCC-CCEEEEEeCC
Confidence 34578999997 9999999999999886 4589999864
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=87.54 E-value=0.56 Score=44.53 Aligned_cols=33 Identities=15% Similarity=0.409 Sum_probs=29.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+|.|||+|.-|.+.|..|.+.|. +|+++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH---CVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC---EEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---eEEEEeCCh
Confidence 579999999999999999999876 799988753
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=87.46 E-value=0.54 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=32.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+|+|||+|-.|..+|..|++.|. ++++|+|.+..
T Consensus 27 ~~~~VlvvG~GglG~~va~~La~~Gv--g~i~lvD~d~v 63 (251)
T 1zud_1 27 LDSQVLIIGLGGLGTPAALYLAGAGV--GTLVLADDDDV 63 (251)
T ss_dssp HTCEEEEECCSTTHHHHHHHHHHTTC--SEEEEECCCBC
T ss_pred hcCcEEEEccCHHHHHHHHHHHHcCC--CeEEEEeCCCc
Confidence 35789999999999999999999997 38999998753
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=87.43 E-value=0.63 Score=44.14 Aligned_cols=37 Identities=19% Similarity=0.366 Sum_probs=31.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+++.+|+|||+|..|.++|..|...+. -.+|.++|.+
T Consensus 4 m~~~KI~IIGaG~vG~~la~~l~~~~~-~~ei~L~Di~ 40 (317)
T 3d0o_A 4 FKGNKVVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40 (317)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCS-CSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 345689999999999999999998875 4579998864
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=87.39 E-value=0.63 Score=44.38 Aligned_cols=37 Identities=19% Similarity=0.534 Sum_probs=33.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+|+|||+|-.|-.+|..|+..|. ++++|+|.+..
T Consensus 33 ~~~~VlIvGaGGlGs~va~~La~aGV--g~ItlvD~D~V 69 (340)
T 3rui_A 33 KNTKVLLLGAGTLGCYVSRALIAWGV--RKITFVDNGTV 69 (340)
T ss_dssp HTCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECCCBC
T ss_pred hCCEEEEECCCHHHHHHHHHHHHcCC--CEEEEecCCEe
Confidence 46789999999999999999999997 48999998754
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=86.99 E-value=0.66 Score=44.34 Aligned_cols=33 Identities=21% Similarity=0.445 Sum_probs=29.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
..+|.|||+|.-|.+.|..|.+.|+ +|++++++
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~---~V~~~~r~ 35 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGE---AINVLARG 35 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTC---CEEEECCH
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC---EEEEEECh
Confidence 4589999999999999999999886 69998763
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=86.98 E-value=0.77 Score=43.85 Aligned_cols=35 Identities=9% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+|+|||+|..|.+.|..|++.|+ .+|+|+|.++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~--~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALREL--ADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC--CeEEEEECCh
Confidence 4589999999999999999999875 2599998764
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=86.95 E-value=0.5 Score=47.37 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+.++|+|||+|..|...+..|.+.|. +|++++++.
T Consensus 10 l~~~~vlVvGgG~va~~k~~~L~~~ga---~V~vi~~~~ 45 (457)
T 1pjq_A 10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTF 45 (457)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCcC---EEEEEcCCC
Confidence 356789999999999999999999875 799999864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=86.95 E-value=0.72 Score=42.70 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=30.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++++|+|.|+|+-|...+..|.+.|+ +|+++++..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~---~V~~~~r~~ 36 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGH---EVTGLRRSA 36 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTC---CEEEEECTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCc
Confidence 34679999999999999999999987 699988764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.90 E-value=1.2 Score=39.48 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+++|+|+|.+|..+|..|.+.|.+|+++++.+
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~ 33 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDR 33 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 68999999999999999999999999998653
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=86.89 E-value=0.61 Score=40.04 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=30.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC-CCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW-KLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~-g~~V~lv~~~~ 240 (489)
+.+++|+|.|.+|..+|..|.+. |.+|+++++.+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence 56899999999999999999999 99999998753
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.76 Score=40.57 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=30.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+|.|||+|.-|.+.|..|.+.|+ +|+++++++.
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~~g~---~V~~~~~~~~ 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEIAGH---EVTYYGSKDQ 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC---EEEEECTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCHH
Confidence 45689999999999999999999886 7999987654
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=0.57 Score=43.74 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=32.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+|+|||+|-.|-.+|..|++.|. ++++|+|.+..
T Consensus 35 ~~~~VlVvGaGGlGs~va~~La~aGV--G~i~lvD~D~V 71 (292)
T 3h8v_A 35 RTFAVAIVGVGGVGSVTAEMLTRCGI--GKLLLFDYDKV 71 (292)
T ss_dssp GGCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECCCBC
T ss_pred hCCeEEEECcCHHHHHHHHHHHHcCC--CEEEEECCCcc
Confidence 45789999999999999999999996 48999998753
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=86.74 E-value=0.8 Score=43.49 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=31.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
|+..+|.|||+|..|.+.|..|+..+. . +|+|+|.++
T Consensus 3 m~~~kI~iiGaG~vG~~~a~~l~~~~~-~-~v~l~Di~~ 39 (321)
T 3p7m_A 3 MARKKITLVGAGNIGGTLAHLALIKQL-G-DVVLFDIAQ 39 (321)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC-C-EEEEECSSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-c-eEEEEeCCh
Confidence 445789999999999999999999876 3 899998764
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=86.64 E-value=0.6 Score=48.86 Aligned_cols=36 Identities=28% Similarity=0.257 Sum_probs=32.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
...++|||+|..|+.+|..|++.|.+|+++++.+..
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~ 81 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEID 81 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCC
Confidence 347999999999999999999999999999987643
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=86.58 E-value=0.82 Score=43.32 Aligned_cols=36 Identities=11% Similarity=0.362 Sum_probs=31.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+..+|+|||+|..|.+.|..|+..+. ..+|+++|.+
T Consensus 5 ~~~kI~IIGaG~vG~sla~~l~~~~~-~~ev~l~Di~ 40 (316)
T 1ldn_A 5 GGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN 40 (316)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC-CCEEEEEeCC
Confidence 45689999999999999999998875 4579999875
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=86.35 E-value=0.69 Score=43.49 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=28.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
.+|.|||+|.-|...|..|.+.|+ +|++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~---~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN---DVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC---cEEEEECC
Confidence 479999999999999999999886 79998764
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=86.29 E-value=0.63 Score=43.97 Aligned_cols=32 Identities=19% Similarity=0.298 Sum_probs=28.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
.+|.|||+|.-|.+.|..|.+.|. +|++++++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~---~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGE---DVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSC---CEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC---eEEEEEcC
Confidence 579999999999999999999886 69998875
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=86.14 E-value=0.71 Score=45.37 Aligned_cols=34 Identities=15% Similarity=0.140 Sum_probs=30.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+|+|||+|.+|+.++..++..|. +|+++|..+
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANSLGA---IVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC---EEEEEcCCH
Confidence 5689999999999999999999875 799988764
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=86.12 E-value=0.79 Score=43.35 Aligned_cols=36 Identities=11% Similarity=0.275 Sum_probs=30.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+|+|||+|..|...|..|.+.|+ ..+|+++|.++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~-~~~V~l~d~~~ 42 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 42 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCh
Confidence 3589999999999999999999875 34799998753
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=86.08 E-value=0.25 Score=49.67 Aligned_cols=110 Identities=17% Similarity=0.268 Sum_probs=63.4
Q ss_pred CceEeecCHHHHHHHHHhh----cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 186 PGVHYIRDVADADALISSL----EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~----~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
+.++.+.+..+..++.+.+ ...++++|+|||.+|..+|..|.+ ..+|+++++.. +-.+.+.+.|.
T Consensus 210 D~v~~i~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~-~~~v~iIE~d~---------~r~~~la~~l~- 278 (461)
T 4g65_A 210 DEVFFVAASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQ-TYSVKLIERNL---------QRAEKLSEELE- 278 (461)
T ss_dssp CEEEEEEETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCH---------HHHHHHHHHCT-
T ss_pred CEEEEEeccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhh-cCceEEEecCH---------HHHHHHHHHCC-
Confidence 3455444444455554443 245789999999999999999865 47899998653 33444445443
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC----chhhhcCCe
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV----SPFERVGLN 319 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~----~~~~~~gl~ 319 (489)
+..++. + ++.-..+ +.....-++|.+|.+|+..-.. -+++++|.+
T Consensus 279 -~~~Vi~-G----------D~td~~~-L~ee~i~~~D~~ia~T~~De~Ni~~~llAk~~gv~ 327 (461)
T 4g65_A 279 -NTIVFC-G----------DAADQEL-LTEENIDQVDVFIALTNEDETNIMSAMLAKRMGAK 327 (461)
T ss_dssp -TSEEEE-S----------CTTCHHH-HHHTTGGGCSEEEECCSCHHHHHHHHHHHHHTTCS
T ss_pred -CceEEe-c----------cccchhh-HhhcCchhhcEEEEcccCcHHHHHHHHHHHHcCCc
Confidence 233433 1 2210011 1122235789999999864211 135556653
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.02 E-value=0.58 Score=41.70 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=29.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEE-EcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCI-VSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~l-i~~~~ 87 (489)
|++.+|.|||+|.-|.+.|..|.+.|+ +|++ +++++
T Consensus 21 m~mmkI~IIG~G~mG~~la~~l~~~g~---~V~~v~~r~~ 57 (220)
T 4huj_A 21 QSMTTYAIIGAGAIGSALAERFTAAQI---PAIIANSRGP 57 (220)
T ss_dssp GGSCCEEEEECHHHHHHHHHHHHHTTC---CEEEECTTCG
T ss_pred hcCCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECCCH
Confidence 445689999999999999999999886 6887 66543
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=85.87 E-value=0.68 Score=43.84 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=30.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+|.|||+|.-|...|..++..|+ +|+|+|.++
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~~G~---~V~l~D~~~ 39 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFASGGF---RVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHHTTC---CEEEECSCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCC---eEEEEECCH
Confidence 35689999999999999999999988 699999865
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=85.77 E-value=0.89 Score=43.20 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=31.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
....+|+|||+|..|.++|..|+..+. -.++.|+|..
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~-~~el~l~D~~ 43 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGI-AQEIGIVDIF 43 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-CCeEEEEeCC
Confidence 455789999999999999999999886 4589999874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=0.65 Score=45.85 Aligned_cols=35 Identities=14% Similarity=0.376 Sum_probs=31.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.+|+|||.|..|...|..|.+.|+ +|++||.++.
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~---~vvvId~d~~ 38 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV---KMVVLDHDPD 38 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEECCHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC---CEEEEECCHH
Confidence 4579999999999999999999987 6999998753
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=1.2 Score=43.45 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...++|+|||+|..|...+..+++.|+ ++.++|..+..|
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~~G~---~vi~~d~~~~~~ 50 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKEMGY---KIAVLDPTKNSP 50 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSTTCT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC---EEEEEeCCCCCc
Confidence 356789999999999999999999988 699998776543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=85.49 E-value=0.91 Score=44.32 Aligned_cols=35 Identities=20% Similarity=0.113 Sum_probs=30.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+|+|||+|.+|+.++..++..|. +|+++|..+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga---~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCH
Confidence 46789999999999999999999875 699988764
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=85.41 E-value=0.86 Score=42.87 Aligned_cols=36 Identities=19% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+|.|||+|..|...|..|...++ -.+|+|+|.++
T Consensus 14 ~~kV~ViGaG~vG~~~a~~l~~~g~-~~ev~L~Di~~ 49 (303)
T 2i6t_A 14 VNKITVVGGGELGIACTLAISAKGI-ADRLVLLDLSE 49 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCC-CCEEEEEcCCc
Confidence 4689999999999999999998886 55799998754
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=85.32 E-value=0.9 Score=42.76 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=29.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|+|||+|..|.+.|..|+..|+ ..+|+++|.++
T Consensus 2 kI~VIGaG~vG~~la~~la~~g~-~~eV~L~D~~~ 35 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVLRGS-CSELVLVDRDE 35 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-CCEEEEEeCCH
Confidence 69999999999999999999886 45799999764
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=0.4 Score=50.71 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=34.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC--------CcEEEEccCC-cchh
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK--------LDTTIIFPEN-HLLQ 244 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g--------~~V~lv~~~~-~~l~ 244 (489)
.++|+|||+|+.|+-+|..|.+.| .+|+++++.+ ++..
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~ 102 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLH 102 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccccc
Confidence 357999999999999999999988 8999999998 8754
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.24 E-value=0.85 Score=43.83 Aligned_cols=33 Identities=15% Similarity=0.249 Sum_probs=29.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+.+|.|||+|.-|...|..|.+.|+ +|+++++.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~~g~---~V~~~~r~ 36 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDID 36 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSC
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCC---EEEEEeCC
Confidence 4589999999999999999999876 69998765
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=85.20 E-value=0.76 Score=45.24 Aligned_cols=41 Identities=15% Similarity=0.290 Sum_probs=34.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
....+|||.|+|.||+.+|..|.+.|.+..+|.++|+....
T Consensus 217 l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli 257 (487)
T 3nv9_A 217 IHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSL 257 (487)
T ss_dssp GGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEEC
T ss_pred hhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccc
Confidence 34678999999999999999999999744689999987543
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.12 E-value=0.96 Score=42.66 Aligned_cols=36 Identities=11% Similarity=0.219 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.++.+|.|||.|.-|...|..|++.|+ +|+++++.+
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~~G~---~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLKNGF---KVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSG
T ss_pred ccCCEEEEECccHHHHHHHHHHHHCCC---eEEEEeCCH
Confidence 345789999999999999999999987 699887653
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=84.83 E-value=1.4 Score=43.99 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=32.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+...+|.|||+|.-|...|..|++.|+ +|+++|.++.
T Consensus 52 ~~i~kVaVIGaG~MG~~IA~~la~aG~---~V~l~D~~~e 88 (460)
T 3k6j_A 52 YDVNSVAIIGGGTMGKAMAICFGLAGI---ETFLVVRNEQ 88 (460)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred ccCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEECcHH
Confidence 345789999999999999999999987 7999998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 489 | ||||
| d1q1ra2 | 133 | c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseud | 8e-23 | |
| d1d7ya2 | 121 | c.3.1.5 (A:116-236) NADH-dependent ferredoxin redu | 9e-23 | |
| d1m6ia2 | 137 | c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF | 2e-21 | |
| d1nhpa2 | 123 | c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus | 2e-20 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 2e-16 | |
| d1d7ya1 | 183 | c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo | 3e-08 | |
| d1xhca2 | 122 | c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas | 2e-16 | |
| d1gesa2 | 116 | c.3.1.5 (A:147-262) Glutathione reductase {Escheri | 9e-16 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 4e-15 | |
| d1q1ra1 | 185 | c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas | 9e-04 | |
| d1onfa2 | 117 | c.3.1.5 (A:154-270) Glutathione reductase {Plasmod | 3e-14 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 3e-13 | |
| d1mo9a2 | 121 | c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl co | 5e-13 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 2e-12 | |
| d1m6ia1 | 213 | c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f | 7e-08 | |
| d1aoga2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Trypa | 2e-12 | |
| d1feca2 | 117 | c.3.1.5 (A:170-286) Trypanothione reductase {Crith | 2e-11 | |
| d1h6va2 | 122 | c.3.1.5 (A:171-292) Mammalian thioredoxin reductas | 5e-11 | |
| d1lvla2 | 115 | c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase | 2e-10 | |
| d1djqa2 | 156 | c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, | 5e-09 | |
| d1mo9a1 | 261 | c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop | 7e-09 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 1e-08 | |
| d1xhca1 | 167 | c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite | 1e-05 | |
| d1trba1 | 190 | c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase | 4e-08 | |
| d3grsa2 | 125 | c.3.1.5 (A:166-290) Glutathione reductase {Human ( | 5e-08 | |
| d1ebda1 | 223 | c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd | 9e-08 | |
| d1fcda1 | 186 | c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulf | 2e-07 | |
| d1ebda2 | 117 | c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase | 2e-07 | |
| d3lada2 | 119 | c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase | 4e-07 | |
| d1ojta2 | 125 | c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase | 4e-07 | |
| d1v59a2 | 122 | c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase | 4e-07 | |
| d1fl2a1 | 184 | c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide | 8e-07 | |
| d3grsa1 | 221 | c.3.1.5 (A:18-165,A:291-363) Glutathione reductase | 1e-06 | |
| d1dxla1 | 221 | c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd | 2e-06 | |
| d1ojta1 | 229 | c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh | 2e-06 | |
| d1feca1 | 240 | c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas | 6e-06 | |
| d1dxla2 | 123 | c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase | 1e-05 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 1e-05 | |
| d1gesa1 | 217 | c.3.1.5 (A:3-146,A:263-335) Glutathione reductase | 2e-05 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 6e-05 | |
| d1vdca1 | 192 | c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase | 7e-05 | |
| d1v59a1 | 233 | c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd | 1e-04 | |
| d1ps9a2 | 162 | c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t | 1e-04 | |
| d1lvla1 | 220 | c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd | 4e-04 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 7e-04 | |
| d1gtea3 | 153 | c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas | 0.001 | |
| d1xdia1 | 233 | c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd | 0.002 | |
| d1kyqa1 | 150 | c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferr | 0.003 | |
| d1aoga1 | 238 | c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas | 0.003 | |
| d3lada1 | 229 | c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd | 0.004 |
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 91.9 bits (227), Expect = 8e-23
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 2/129 (1%)
Query: 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIF 237
G Y+R + DA+ + L ++VV+GGGYIG+EVAA A+ + T++
Sbjct: 6 ASGAVGKANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLD 65
Query: 238 PENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLEDGSTID 296
+L+R+ P ++ YE L+++ GV + G + E +D +V AV EDG+ +
Sbjct: 66 TAARVLERVTAPPVSAFYEHLHREAGVDI-RTGTQVCGFEMSTDQQKVTAVLCEDGTRLP 124
Query: 297 ADTIVIGIG 305
AD ++ GIG
Sbjct: 125 ADLVIAGIG 133
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 91.3 bits (226), Expect = 9e-23
Identities = 36/125 (28%), Positives = 62/125 (49%), Gaps = 7/125 (5%)
Query: 181 IGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240
+ G VH +R + DA + + L ++++VGGG IG+E+AA A + +++ +
Sbjct: 4 LQGATMPVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63
Query: 241 HLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI 300
L+ R +LA + + GV + S+ G V L+DG+ I AD +
Sbjct: 64 RLMSRAAPATLADFVARYHAAQGVDL-RFERSVTGSVDG------VVLLDDGTRIAADMV 116
Query: 301 VIGIG 305
V+GIG
Sbjct: 117 VVGIG 121
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.9 bits (217), Expect = 2e-21
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 7/133 (5%)
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLD 232
R + D +L + K + ++GGG++G E+A A +
Sbjct: 7 IDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTE 66
Query: 233 TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG 292
+FPE + ++ L+ + ++ GVK + A ++++ +KL+DG
Sbjct: 67 VIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVM-PNAIVQSVGV--SSGKLLIKLKDG 123
Query: 293 STIDADTIVIGIG 305
++ D IV +G
Sbjct: 124 RKVETDHIVAAVG 136
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 84.5 bits (208), Expect = 2e-20
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 6/125 (4%)
Query: 182 GGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239
G L ++ +R A L + VVV+G GYIG+E A A T+I
Sbjct: 3 GKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62
Query: 240 NHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADT 299
+ L + + N + G +++ E DGRV V + D + DAD
Sbjct: 63 DRPLGVYLDKEFTDVLTEEMEANNITI-ATGETVERYEG--DGRVQKV-VTDKNAYDADL 118
Query: 300 IVIGI 304
+V+ +
Sbjct: 119 VVVAV 123
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 75.2 bits (183), Expect = 2e-16
Identities = 37/183 (20%), Positives = 64/183 (34%), Gaps = 19/183 (10%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------Q 257
VVV+G G + A I + + P L++ +
Sbjct: 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63
Query: 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVG 317
+ V+++ + D + V L DG T+ T+V+ GA P
Sbjct: 64 CKRAPEVEWLLGVTAQSF-----DPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDAL 118
Query: 318 LNSSV----GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIK 373
++ GI VD RT P ++A+GDV + R R+E +A+ +
Sbjct: 119 ARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVAR 178
Query: 374 ALL 376
L+
Sbjct: 179 HLV 181
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Score = 51.7 bits (122), Expect = 3e-08
Identities = 36/184 (19%), Positives = 66/184 (35%), Gaps = 31/184 (16%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGF 114
V++G G A+ + G G + +V EA PY+RP L+K ++ D + R
Sbjct: 7 VVLGAGLASVSFVAELRQAG-YQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIR---- 61
Query: 115 HTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174
+ + +E + S D + T+ + G+ L YG+L++ATG
Sbjct: 62 ------------LDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109
Query: 175 SRFPEKI-----------GGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVA 223
G + D AL + ++ + G + +E
Sbjct: 110 RAVLANDALARAAGLACDDGIFVDAYGRTTCPDVYALG---DVTRQRNPLSGRFERIETW 166
Query: 224 AAAV 227
+ A
Sbjct: 167 SNAQ 170
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 73.2 bits (179), Expect = 2e-16
Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 185 LPG---VHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241
+ G + +R + DAD + S+E + + +++GGG+IG+E+A +I
Sbjct: 7 IKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM 66
Query: 242 LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIV 301
L L+ + + ++ GVKF + + + EA +G L + I+ +
Sbjct: 67 FLG--LDEELSNMIKDMLEETGVKF-FLNSELL--EANEEGV-----LTNSGFIEGKVKI 116
Query: 302 IGIG 305
IG
Sbjct: 117 CAIG 120
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 116 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 71.3 bits (174), Expect = 9e-16
Identities = 31/121 (25%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
+PGV Y D AL ++V VVG GYIG+E+ G T + + L
Sbjct: 2 IPGVEYGIDSDGFFAL---PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLP 58
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 304
++ ++ G + A K + +DG + ++LEDG + D ++ I
Sbjct: 59 SFDPMI-SETLVEVMNAEGPQL-HTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAI 115
Query: 305 G 305
G
Sbjct: 116 G 116
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 71.3 bits (173), Expect = 4e-15
Identities = 41/181 (22%), Positives = 60/181 (33%), Gaps = 13/181 (7%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTII---------FPENHLLQRLFTPSLAQRYEQL 258
VV+VG G G+EVA + I L + L
Sbjct: 4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYL 63
Query: 259 YQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTI---VIGIGAKPTVSPFER 315
+ + + V L DG +D D + G P
Sbjct: 64 RTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASA 123
Query: 316 VGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375
GL GI ++ +T P I A+GD A F ++YDR R+E V +A + A+ L
Sbjct: 124 AGLQV-DNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVPNALEQARKIAAIL 182
Query: 376 L 376
Sbjct: 183 C 183
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Score = 38.2 bits (87), Expect = 9e-04
Identities = 31/182 (17%), Positives = 53/182 (29%), Gaps = 13/182 (7%)
Query: 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKP 108
N N VIVG G A A G +G + +V P+ P L+K YL
Sbjct: 1 NANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKATAE 59
Query: 109 ARLPGFHTCVGSGGERQTPEW---YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGS 165
+ + + + + + ++D ++ L T L+
Sbjct: 60 SLYLRTPDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCE 119
Query: 166 LIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAA 225
L A G I V D A+ + ++ +E
Sbjct: 120 LASAAGLQVDNGIVINEHMQTSDPLIMAVGDC---------ARFHSQLYDRWVRIESVPN 170
Query: 226 AV 227
A+
Sbjct: 171 AL 172
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Score = 67.1 bits (163), Expect = 3e-14
Identities = 27/129 (20%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII 236
FP + G+ + +++++KK+ +VG GYI +E+ +D+ I
Sbjct: 1 FPP-----VKGIENTISSDEFF----NIKESKKIGIVGSGYIAVELINVIKRLGIDSYIF 51
Query: 237 FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTID 296
N +L++ F S+ E ++N + V A + ++ SD + ++ L DG +
Sbjct: 52 ARGNRILRK-FDESVINVLENDMKKNNINIVT-FADVVEIKKVSDKNL-SIHLSDGRIYE 108
Query: 297 A-DTIVIGI 304
D ++ +
Sbjct: 109 HFDHVIYCV 117
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 66.4 bits (160), Expect = 3e-13
Identities = 31/190 (16%), Positives = 55/190 (28%), Gaps = 22/190 (11%)
Query: 209 KVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHLL------------QRLFTPSLAQR 254
KV+V+G + G E + + + + + S+
Sbjct: 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYM 61
Query: 255 YEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE 314
+ + GV V + + + D ++I GA P
Sbjct: 62 TGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGV 121
Query: 315 RVGLNSSV--------GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQ 366
R G I+ D RT P +FA+GD D + +AR+
Sbjct: 122 RPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALATNARK 181
Query: 367 SAQHCIKALL 376
+ +K L
Sbjct: 182 QGRFAVKNLE 191
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 63.5 bits (153), Expect = 5e-13
Identities = 26/117 (22%), Positives = 44/117 (37%), Gaps = 7/117 (5%)
Query: 194 VADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSL 251
V D L+ L E VVVVGG +E T ++ L +
Sbjct: 7 VFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNET- 65
Query: 252 AQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV---KLEDGSTIDADTIVIGIG 305
+ Y + + G+++ +E ++GRV AV I+ D + +G+G
Sbjct: 66 -RAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.3 bits (155), Expect = 2e-12
Identities = 44/198 (22%), Positives = 67/198 (33%), Gaps = 21/198 (10%)
Query: 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK 107
A + F+++GGG AA AAR+ R+ IVS++ PY RP L+K F D
Sbjct: 1 APSHVPFLLIGGGTAAFAAARSIRARD-PGARVLIVSEDPELPYMRPPLSKELWFSDD-- 57
Query: 108 PARLPGFHTCVGSGGERQTP-------------EWYKEKGIEMIYQDPVTSIDIEKQTLI 154
P +G ER + G+ ++ V +D+ +
Sbjct: 58 PNVTKTLRFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVK 117
Query: 155 TNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS-----LEKAKK 209
N G + Y ++ATG T G L L + A
Sbjct: 118 LNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQARSNIWVAGDAAC 177
Query: 210 VVVVGGGYIGMEVAAAAV 227
+ G +E AV
Sbjct: 178 FYDIKLGRRRVEHHDHAV 195
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 7e-08
Identities = 33/219 (15%), Positives = 65/219 (29%), Gaps = 47/219 (21%)
Query: 208 KKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENH------------------------ 241
+++GGG A + A I+ +
Sbjct: 5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTL 64
Query: 242 -----------LLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290
+ + + ++ + + GV + G + L+ + +
Sbjct: 65 RFKQWNGKERSIYFQPPSFYVSAQDLPHIENGGVAVLT-GKKVVQLDVRDNMVKLNDGSQ 123
Query: 291 DGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
G ++ + ++S GG +V+ + + R I+ GD A F
Sbjct: 124 ITYEKCLIAT-GGTEPNVELAKTGGLEIDSDFGGFRVNAELQARS-NIWVAGDAACFYDI 181
Query: 351 MYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYLPYF 389
R RVEH DHA S + + + A PY+
Sbjct: 182 KLGRR-RVEHHDHAVVSGRLAGENMTGAAK------PYW 213
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 61.4 bits (148), Expect = 2e-12
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 7/122 (5%)
Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAA--VGWKLDTTIIFPENHL 242
+PG+ + +A L E ++V+ VGGG+I +E A K + +
Sbjct: 1 IPGIEHCISSNEAFYL---PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM 57
Query: 243 LQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302
+ R F +L + + NG++ + + +E +DG +V E G +D D +++
Sbjct: 58 ILRGFDHTLREELTKQLTANGIQILT-KENPAKVELNADGSK-SVTFESGKKMDFDLVMM 115
Query: 303 GI 304
I
Sbjct: 116 AI 117
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 58.7 bits (141), Expect = 2e-11
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII-FPENHLLQRLFTPSLAQRYEQLYQQNG 263
E K+ + VGGGYI +E A +K + + S ++ +
Sbjct: 16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRAN 75
Query: 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305
V+ + + +DG V E G+ D D +++ IG
Sbjct: 76 GINVRTHENPAKVTKNADGTR-HVVFESGAEADYDVVMLAIG 116
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 57.8 bits (139), Expect = 5e-11
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 8/104 (7%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFV 267
K +VVG Y+ +E A G LD T++ L F +A + + +++G+KF+
Sbjct: 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--FDQDMANKIGEHMEEHGIKFI 78
Query: 268 K--VGASIKNLEAGSDGRVA----AVKLEDGSTIDADTIVIGIG 305
+ V I+ +EAG+ GR+ + E+ + +T+++ +G
Sbjct: 79 RQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 115 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 56.4 bits (135), Expect = 2e-10
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 9/122 (7%)
Query: 185 LP-GVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
LP G I + ++ + +VVVGGGYIG+E+ A +++ +L
Sbjct: 2 LPLGGPVI----SSTEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL 57
Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303
+ A E L + + +G S++ E G +A ++AD +++
Sbjct: 58 PTYDSELTAPVAESLKKLG--IALHLGHSVEGYENG--CLLANDGKGGQLRLEADRVLVA 113
Query: 304 IG 305
+G
Sbjct: 114 VG 115
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 53.0 bits (126), Expect = 5e-09
Identities = 14/152 (9%), Positives = 33/152 (21%), Gaps = 16/152 (10%)
Query: 169 ATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVG 228
G G + + K ++ ++ +A
Sbjct: 4 TDGTNCLTHDPIPGADASLPDQL-TPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLAT 62
Query: 229 WKLDTTIIFPENHLLQRLFTPSLAQRYEQL---------------YQQNGVKFVKVGASI 273
+ TI+ + FT +L + ++ +
Sbjct: 63 AGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDG 122
Query: 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305
G I+ D++V+ G
Sbjct: 123 SKRTYRGPGVSPRDANTSHRWIEFDSLVLVTG 154
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Score = 54.2 bits (129), Expect = 7e-09
Identities = 26/218 (11%), Positives = 54/218 (24%), Gaps = 57/218 (26%)
Query: 188 VHYIRDVADADALISSLEKAKK----VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL- 242
+ I + D +I ++++ + +GGG G +A I+ L
Sbjct: 19 IDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78
Query: 243 ---LQRLFTPSLAQRY---------EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290
P Q + IK +
Sbjct: 79 GSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGI 138
Query: 291 DG-----------------------------STIDADTIVIGIGAKPTVSPFERVGLNSS 321
A +++ +GA P ++
Sbjct: 139 MNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAE 198
Query: 322 V-----------GGIQVDGQFRTRMPGIFAIGDVAAFP 348
+ G + V+ +T +P ++A+GD+ P
Sbjct: 199 LAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGP 236
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 52.0 bits (123), Expect = 1e-08
Identities = 38/173 (21%), Positives = 58/173 (33%), Gaps = 14/173 (8%)
Query: 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268
KVV+VG G G E+A + T+I E S + +
Sbjct: 2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLD 60
Query: 269 VGASIK-----NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 323
EA R V + + + DT+V+ GA R G+++
Sbjct: 61 WYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-R 118
Query: 324 GIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376
GI +D FRT ++AIGD A + A + A+ L
Sbjct: 119 GILIDDNFRTSAKDVYAIGDCAEYSG------IIAGTAKAAMEQARVLADILK 165
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Score = 43.2 bits (100), Expect = 1e-05
Identities = 32/183 (17%), Positives = 50/183 (27%), Gaps = 35/183 (19%)
Query: 55 VIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYL----------FPL 104
VIVG G A+ + + ++ KE Y +P L+ + L
Sbjct: 4 VIVGNGPGGFELAKQLSQ----TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSL 59
Query: 105 DKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYG 164
D R + + + + E+ Y V + L SG G
Sbjct: 60 DWYRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRG 119
Query: 165 SLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAA 224
LI T V+ I D A+ ++ G ME A
Sbjct: 120 ILIDDNFRT----------SAKDVYAIGDCAE-----------YSGIIAGTAKAAMEQAR 158
Query: 225 AAV 227
Sbjct: 159 VLA 161
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Score = 51.4 bits (122), Expect = 4e-08
Identities = 31/164 (18%), Positives = 51/164 (31%), Gaps = 19/164 (11%)
Query: 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
K K++++G G G A A L +I Q T + G
Sbjct: 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63
Query: 266 FVK--VGASIKNLEAGSDGRVAAVKLEDG--------STIDADTIVIGIGAKP----TVS 311
++ + K + V L++ D ++I GA +
Sbjct: 64 LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123
Query: 312 PFERVGLNSSVGGIQVDG-----QFRTRMPGIFAIGDVAAFPLK 350
L G I+V +T +PG+FA GDV +
Sbjct: 124 AIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 167
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (117), Expect = 5e-08
Identities = 27/128 (21%), Positives = 51/128 (39%), Gaps = 12/128 (9%)
Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
+PG L E + V+VG GYI +E+A T+++ + +L+
Sbjct: 3 IPGASLGITSDGFFQL---EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLR 59
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLEDG------STIDA 297
F ++ + + GV+ +K + +K ++ G V+ V G D
Sbjct: 60 S-FDSMISTNCTEELENAGVEVLK-FSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDV 117
Query: 298 DTIVIGIG 305
D ++ IG
Sbjct: 118 DCLLWAIG 125
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 50.6 bits (120), Expect = 9e-08
Identities = 46/234 (19%), Positives = 70/234 (29%), Gaps = 73/234 (31%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII--------------------------------- 236
+VVG G G A A TI+
Sbjct: 6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHS 65
Query: 237 -------------FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283
F + + L E L + N V+ VK A
Sbjct: 66 EEMGIKAENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFV-----DANT 120
Query: 284 VAAVKLEDGSTIDADTIVIGIGAKPTVSP----------FERVGLN-SSVGGIQVDGQFR 332
V V + T +I G++P E++G+ ++ G I+VD Q R
Sbjct: 121 VRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDELGLEQIGIKMTNRGLIEVDQQCR 180
Query: 333 TRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQTHTYDYL 386
T +P IFAIGD+ P + H A + +A+ + DY+
Sbjct: 181 TSVPNIFAIGDIVPGPA--------LAHK--ASYEGKVAAEAIAGHPSA-VDYV 223
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Score = 48.6 bits (114), Expect = 2e-07
Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 21/187 (11%)
Query: 207 AKKVVVVGGGYIGMEVAAA--AVGWKLDTTIIFPENHLLQRLFTPSLAQRYE--QLYQQN 262
+KVVVVGGG G A ++ T+I P + + + +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHG 61
Query: 263 GVKFVKVGASIKNLEAGSDGRVAAV-KLEDGSTIDADTIVIGIGAKP----------TVS 311
G + + A + K G+ D V+ G + ++
Sbjct: 62 YDGLRAHGIQVVHDSATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIA 121
Query: 312 PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVA-AFPLKMYDRTARVEHVDHARQSAQH 370
+ ++ + + + GI IGD + A P+ +A + +A
Sbjct: 122 QIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDASIANPMPKSGYSA----NSQGKVAAAA 177
Query: 371 CIKALLS 377
+ LL
Sbjct: 178 -VVVLLK 183
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 117 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Query: 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245
P + + D+ ++ E K +VV+GGGYIG+E+ A + TI+ +L
Sbjct: 1 PNFKFSNRILDSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG 60
Query: 246 LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 302
A ++L ++ V A K E DG V + TIDAD +++
Sbjct: 61 FEKQMAAIIKKRLKKKG--VEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLV 116
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 119 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 20/113 (17%), Positives = 48/113 (42%), Gaps = 3/113 (2%)
Query: 194 VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQ 253
+ D+ + K+ V+G G IG+E+ + + T++ + +A+
Sbjct: 9 IVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDK-FLPAVDEQVAK 67
Query: 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVIGIG 305
+++ + G+K + +GA + E + V V E + D +++ +G
Sbjct: 68 EAQKILTKQGLKIL-LGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 46.8 bits (110), Expect = 4e-07
Identities = 18/123 (14%), Positives = 45/123 (36%), Gaps = 4/123 (3%)
Query: 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
LP + + D+ ++ E K++++GGG IG+E+ ++ + L
Sbjct: 4 LPFIPEDPRIIDSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDG-LM 62
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVI 302
+ L + +++ + + +E DG + + D +++
Sbjct: 63 QGADRDLVKVWQKQNEYRFDNIMV-NTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLV 121
Query: 303 GIG 305
G
Sbjct: 122 AAG 124
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (110), Expect = 4e-07
Identities = 21/123 (17%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 186 PGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244
PG+ + + +S E K++ ++GGG IG+E+ + T++ + +
Sbjct: 1 PGIEIDEEKIVSSTGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ-IG 59
Query: 245 RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-----TIDADT 299
+A+ ++ ++ G+ F K+ + + + D V + +ED ++A+
Sbjct: 60 ASMDGEVAKATQKFLKKQGLDF-KLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEV 118
Query: 300 IVI 302
+++
Sbjct: 119 LLV 121
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Score = 47.0 bits (110), Expect = 8e-07
Identities = 30/155 (19%), Positives = 62/155 (40%), Gaps = 14/155 (9%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII-------------FPENHLLQRLFTPSLAQRYE 256
V++VG G G A + + T ++ + + LA +
Sbjct: 4 VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63
Query: 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERV 316
+ V + ++ K + A +G + ++ G+ + A +I++ GAK + +
Sbjct: 64 VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123
Query: 317 GLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLK 350
+ + +G I +D + T + G+FA GD P K
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYK 158
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.2 bits (111), Expect = 1e-06
Identities = 36/191 (18%), Positives = 49/191 (25%), Gaps = 52/191 (27%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII--------------------------------- 236
+V+GGG G+ A A ++
Sbjct: 6 YLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDH 65
Query: 237 ------FPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLE 290
E R+ +L K I A
Sbjct: 66 ADYGFPSCEGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEV 125
Query: 291 DGSTIDADTIVIGIGAKPTVSPFERV----GLN--------SSVGGIQVDGQFRTRMPGI 338
G A I+I G P+ P ERV L+ G I VD T + GI
Sbjct: 126 SGKKYTAPHILIATGGMPST-PHERVPNTKDLSLNKLGIQTDDKGHIIVDEFQNTNVKGI 184
Query: 339 FAIGDVAAFPL 349
+A+GDV L
Sbjct: 185 YAVGDVCGKAL 195
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 46.4 bits (109), Expect = 2e-06
Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 52/191 (27%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL---------LQRLFTPSLAQRYEQLYQ 260
VV++GGG G A A TT I L + + Y +
Sbjct: 6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKH 65
Query: 261 QNGVKFVKVGA--------------SIKNLEAGSDGRVAAVKLE---------------- 290
VKV ++ NL G +G K+
Sbjct: 66 SFANHGVKVSNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISV 125
Query: 291 -----DGSTIDADTIVIGIGAKPT-VSPF------ERVGLN-SSVGGIQVDGQFRTRMPG 337
+ + + I+I G+ +PF +++G+ +G I V+ +F T + G
Sbjct: 126 DTIEGENTVVKGKHIIIATGSDVKGRTPFTSGLNLDKIGVETDKLGRILVNERFSTNVSG 185
Query: 338 IFAIGDVAAFP 348
++AIGDV P
Sbjct: 186 VYAIGDVIPGP 196
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Score = 46.5 bits (109), Expect = 2e-06
Identities = 41/197 (20%), Positives = 61/197 (30%), Gaps = 57/197 (28%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-----------LQRLFTPSLAQRYEQL 258
VVV+GGG G A AA L I+ L + L + +
Sbjct: 9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRH 68
Query: 259 YQQNGVKFVKVGASIKNLEAGSDGRVAAV-----KLEDGSTID----------------- 296
NG+K+ + I L A DG V+ + + +D
Sbjct: 69 LAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVS 128
Query: 297 ---------------------ADTIVIGIGAKPTVSPFERVGLNSSV---GGIQVDGQFR 332
+ I+ P +V G I+VD Q R
Sbjct: 129 LTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDKQMR 188
Query: 333 TRMPGIFAIGDVAAFPL 349
T +P I+AIGD+ P+
Sbjct: 189 TNVPHIYAIGDIVGQPM 205
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Score = 45.3 bits (106), Expect = 6e-06
Identities = 21/104 (20%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPF--- 313
G+ F + ++++ A T+D + I++ G+ P
Sbjct: 112 MFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEVP 171
Query: 314 -------ERVGLNSSVGG-IQVDGQFRTRMPGIFAIGDVAAFPL 349
E+ G+ + G I+VD +T + I+AIGDV +
Sbjct: 172 RSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM 215
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 123 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Score = 42.5 bits (99), Expect = 1e-05
Identities = 26/122 (21%), Positives = 53/122 (43%), Gaps = 6/122 (4%)
Query: 185 LPGVHYI-RDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243
LPGV + + + ++ E KK+VV+G GYIG+E+ + + T++ E
Sbjct: 2 LPGVTIDEKKIVSSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVV--EFASE 59
Query: 244 QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG---STIDADTI 300
+ ++ Q + K+ + ++ DG V+ G + I+AD +
Sbjct: 60 IVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVV 119
Query: 301 VI 302
++
Sbjct: 120 LV 121
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 44.0 bits (102), Expect = 1e-05
Identities = 26/224 (11%), Positives = 61/224 (27%), Gaps = 26/224 (11%)
Query: 37 RRGFVVAYSSFANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPAL 96
RRG+ +IVG G + AAR +E G
Sbjct: 35 RRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD--------------- 79
Query: 97 TKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITN 156
+K L G G ++ + + +++ ++ + + + ++ + +
Sbjct: 80 ------TAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMTAD 133
Query: 157 SGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGG 216
+I+ATG + D+ + + ++
Sbjct: 134 DVLQYGADKVIIATGAS-ECTLWNELKARESEWAENDIKGIYLIG---DAEAPRLIADAT 189
Query: 217 YIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQ 260
+ G VA I + + ++ Y+
Sbjct: 190 FTGHRVAREIEEANPQIAIPYKRETIAWGTPHMP-GGNFKIEYK 232
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 29/183 (15%), Positives = 50/183 (27%), Gaps = 47/183 (25%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII-----------FPENHLLQRLFTPSLAQRYEQL 258
+ +GGG G+ A + +I + +
Sbjct: 5 YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64
Query: 259 YQQNGVKFVKVGASIKNLEAGSDGRVAAV---------------------------KLED 291
G + + L A + + +
Sbjct: 65 GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124
Query: 292 GSTIDADTIVIGIGAKPTVSPF---ERVGLN------SSVGGIQVDGQFRTRMPGIFAIG 342
G TI AD I+I G +P+ + + L + G I VD T + GI+A+G
Sbjct: 125 GETITADHILIATGGRPSHPREPANDNINLEAAGVKTNEKGYIVVDKYQNTNIEGIYAVG 184
Query: 343 DVA 345
D
Sbjct: 185 DNT 187
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (99), Expect = 6e-05
Identities = 5/81 (6%), Positives = 22/81 (27%)
Query: 268 KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQV 327
++L ++ + ++ I + + + +N + + +
Sbjct: 201 YKNDGTRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVI 260
Query: 328 DGQFRTRMPGIFAIGDVAAFP 348
+ ++ G A
Sbjct: 261 HSGAYAGVDNMYFAGMEVAEL 281
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 41.4 bits (96), Expect = 7e-05
Identities = 26/167 (15%), Positives = 46/167 (27%), Gaps = 21/167 (12%)
Query: 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTII---------------FPENHLLQRLFTP 249
++ +VG G A A +L + + F
Sbjct: 3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPE 62
Query: 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309
+ + + + + D I AD +++ IGA
Sbjct: 63 GILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAK 122
Query: 310 VSPFERVGLNSSV-----GGIQVD-GQFRTRMPGIFAIGDVAAFPLK 350
L+ V G + G +T +PG+FA GDV +
Sbjct: 123 GHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYR 169
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.4 bits (96), Expect = 1e-04
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 255 YEQLYQQNGVKFVKVGASI--KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312
E L+++N V + K S + + +++ +D I++ G++ T
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPFV 161
Query: 313 ----------FERVGLN-SSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348
E++GL G + +D QF ++ P I +GDV P
Sbjct: 162 GRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGP 208
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 46/167 (27%)
Query: 176 RFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV-------- 227
R P G P V DV L KV ++G G IG + A
Sbjct: 3 RTPPIDGIDHPKVLSYLDV-----LRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 57
Query: 228 -----------------------------GWKLDTTIIFPENHLLQRLFTPSLAQRYEQL 258
++ + + + +
Sbjct: 58 NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTT 117
Query: 259 YQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305
GVK + + + DG + + + D +VI G
Sbjct: 118 LLSRGVKMIP---GVSYQKIDDDGLHVVIN-GETQVLAVDNVVICAG 160
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 24/189 (12%), Positives = 53/189 (28%), Gaps = 49/189 (25%)
Query: 210 VVVVGGGYIGMEVAAAAVGWKLDTTII----------FPENHLLQRLFTPSLAQRYEQLY 259
++++GGG G A A + T ++ + L + +
Sbjct: 8 LLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRF 67
Query: 260 QQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS-------------------------- 293
+ + V + ++ + V
Sbjct: 68 TEPSPLGISVASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVE 127
Query: 294 ----TIDADTIVIGIGAKPTVSPFERVGLNSSV---------GGIQVDGQFRTRMPGIFA 340
I + +++ G+ P ++ I +D + +T M ++A
Sbjct: 128 VDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQTSMHNVWA 187
Query: 341 IGDVAAFPL 349
IGDVA P+
Sbjct: 188 IGDVAGEPM 196
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 38.6 bits (88), Expect = 7e-04
Identities = 33/198 (16%), Positives = 56/198 (28%), Gaps = 22/198 (11%)
Query: 208 KKVVVVGGGYIGMEVA--AAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265
K+ ++G G + A A +G+ D TI + ++ + R ++
Sbjct: 5 AKIALLGAGPASISCASFLARLGYS-DITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIE 63
Query: 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFE----RVGLNSS 321
+K + A I IG+ + + N
Sbjct: 64 LMKDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRW 123
Query: 322 VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHC------IKAL 375
+T P +FA GD+ T V+ Q I+A
Sbjct: 124 DLPEVDPETMQTSEPWVFAGGDIVGMA-----NTT----VESVNDGKQASWYIHKYIQAQ 174
Query: 376 LSAQTHTYDYLPYFYSRV 393
A LP FY+ V
Sbjct: 175 YGASVSAKPELPLFYTPV 192
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 37.1 bits (85), Expect = 0.001
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 11/109 (10%)
Query: 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIF-----PENHLLQRLFTPSLAQRYEQLYQQN 262
V+V+G G + A +A+ + + + ++ E L +
Sbjct: 46 GAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLS 105
Query: 263 GVKFV-----KVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306
K + V E G+ + + + AD ++ G+
Sbjct: 106 PRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQI-VHLKADVVISAFGS 153
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 37.4 bits (85), Expect = 0.002
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 323 GGIQVDGQFRTRMPGIFAIGDVAAFP 348
+ VD RT GI+A GD
Sbjct: 182 NYLTVDRVSRTLATGIYAAGDCTGLL 207
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 150 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.3 bits (83), Expect = 0.003
Identities = 18/109 (16%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Query: 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-LLQRLFTPSLAQRYEQLYQQNGV 264
K K+++++GGG +G+ + T++ P+ H + F + + + Y+++
Sbjct: 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFGKFIQNKDQPDYREDAK 71
Query: 265 KFVKVGASIKNLEAGS--DGRVAAVKLEDGSTIDADTIVIGIGAKPTVS 311
+F+ E L+ + DA I++ S
Sbjct: 72 RFINPNWDPTKNEIYEYIRSDFKDEYLDLENENDAWYIIMTCIPDHPES 120
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Score = 36.9 bits (84), Expect = 0.003
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 323 GGIQVDGQFRTRMPGIFAIGDVAAFP 348
GG+QVD RT + I+AIGDV
Sbjct: 188 GGVQVDEYSRTNVSNIYAIGDVTNRV 213
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Score = 36.6 bits (83), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 323 GGIQVDGQFRTRMPGIFAIGDVAAFP 348
G I VD T +PG++AIGDV
Sbjct: 179 GFIYVDDYCATSVPGVYAIGDVVRGA 204
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 489 | |||
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.92 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.9 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.87 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.86 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.86 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.85 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.84 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.82 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.77 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.77 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.76 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.72 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.71 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.71 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.71 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.7 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.69 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.69 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.68 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.68 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.67 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.66 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.65 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.64 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.64 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.63 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.63 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 99.63 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.61 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.6 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.6 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.56 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.56 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.56 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.55 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.55 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.55 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.53 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.45 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.43 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.38 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.33 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.32 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.32 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.28 | |
| d1q1ra3 | 103 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.26 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.26 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 99.25 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.2 | |
| d1d7ya3 | 97 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.19 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 99.17 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.17 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.16 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.15 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.14 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.14 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 99.1 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.1 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.08 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 99.08 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.07 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.06 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.04 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.03 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.03 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 99.01 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.0 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.0 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 99.0 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.99 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.98 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.96 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.94 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.94 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.92 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.91 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.91 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.9 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.89 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.87 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.87 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.86 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.86 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.85 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 98.8 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.78 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.78 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.77 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.75 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.74 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.74 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 98.73 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.71 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.7 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.7 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.66 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.65 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.64 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.63 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 98.61 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.6 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.59 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.56 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.54 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.51 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.5 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.5 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 98.47 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.46 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.42 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.38 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.38 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 98.36 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.33 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.32 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.31 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.3 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.26 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.23 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.22 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.2 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.19 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.19 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.15 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.14 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.13 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.12 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 98.11 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.08 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.08 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.08 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.07 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 98.06 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 98.01 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 97.99 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 97.95 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 97.95 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.93 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.91 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 97.9 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.88 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.88 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.85 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 97.84 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 97.81 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.8 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.78 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 97.77 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.74 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 97.73 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.64 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.64 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 97.63 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.59 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.52 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.51 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.44 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 97.35 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.33 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.28 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.23 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 97.19 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.18 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.16 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 97.11 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.11 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.06 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 97.06 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 97.02 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.97 | |
| d1v59a3 | 123 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.89 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.88 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.85 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 96.82 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 96.79 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 96.65 | |
| d3lada3 | 124 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.62 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 96.55 | |
| d1xdia2 | 118 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 96.53 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 96.52 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.5 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 96.49 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 96.42 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 96.33 | |
| d1ojta3 | 128 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 96.33 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 96.31 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 96.19 | |
| d1dxla3 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 96.18 | |
| d1lvla3 | 123 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 96.16 | |
| d1ebda3 | 115 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 96.14 | |
| d1m6ia3 | 131 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 95.99 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 95.96 | |
| d1gtea1 | 182 | Dihydropyrimidine dehydrogenase, N-terminal domain | 95.87 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 95.87 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 95.86 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 95.85 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 95.46 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.43 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 95.39 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.27 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 95.27 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.27 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.16 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.15 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 95.14 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.05 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.04 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.0 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.99 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.99 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 94.8 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 94.7 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 94.61 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 94.57 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 94.55 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 94.5 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.46 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 94.34 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 94.33 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.98 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.96 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 93.93 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 93.86 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 93.7 | |
| d3grsa3 | 115 | Glutathione reductase {Human (Homo sapiens) [TaxId | 93.69 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.68 | |
| d1onfa3 | 119 | Glutathione reductase {Plasmodium falciparum [TaxI | 93.5 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.45 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 93.43 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.38 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 93.34 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 93.05 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 93.04 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 93.03 | |
| d1gesa3 | 115 | Glutathione reductase {Escherichia coli [TaxId: 56 | 92.96 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 92.76 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 92.72 | |
| d1feca3 | 128 | Trypanothione reductase {Crithidia fasciculata [Ta | 92.59 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 92.49 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 92.33 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 92.28 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.18 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 91.98 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 91.96 | |
| d1h6va3 | 133 | Mammalian thioredoxin reductase {Rat (Rattus norve | 91.93 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 91.91 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 91.91 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 91.85 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.5 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 91.41 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 91.34 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.05 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 91.03 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 90.89 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.74 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 90.52 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.46 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 90.34 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 90.22 | |
| d1fcda2 | 141 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 90.2 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 90.07 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 90.06 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 89.95 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 89.93 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 89.79 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 89.59 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 89.55 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 89.41 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.08 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 88.66 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 88.63 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 88.19 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 87.95 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 87.78 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 87.71 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 87.66 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 87.55 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 87.33 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 87.09 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 86.92 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 86.78 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 86.74 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 86.49 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 85.98 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 85.97 | |
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 85.95 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 85.77 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 85.7 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 85.39 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 85.31 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 85.21 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 85.11 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 85.06 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 85.02 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 84.87 | |
| d1mo9a3 | 140 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 84.82 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.8 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.75 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 84.33 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 84.19 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 84.1 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.9 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 83.5 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 83.33 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 82.44 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 82.32 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 82.26 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 82.19 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 81.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 81.66 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.55 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 81.51 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 81.18 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.06 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 80.79 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 80.78 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 80.77 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 80.77 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 80.68 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 80.62 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 80.6 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 80.57 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 80.17 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 80.14 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 80.07 |
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.3e-26 Score=206.28 Aligned_cols=114 Identities=31% Similarity=0.463 Sum_probs=96.2
Q ss_pred HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC-CchhhhcCCeec--CCcEEeCCCCCCC
Q 011267 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-VSPFERVGLNSS--VGGIQVDGQFRTR 334 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~-~~~~~~~gl~~~--~g~i~vd~~~~t~ 334 (489)
.+++.||++++ +++|++|+.++ . .|++++|++++||.+|+|+|..|+ +++....|++.+ .++|.||++|||+
T Consensus 92 ~~~~~gI~~~~-g~~V~~id~~~-~---~V~l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~vd~~l~~~ 166 (213)
T d1m6ia1 92 HIENGGVAVLT-GKKVVQLDVRD-N---MVKLNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRVNAELQAR 166 (213)
T ss_dssp TSTTCEEEEEE-TCCEEEEEGGG-T---EEEETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEECCTTCEEE
T ss_pred HHHHCCeEEEe-CCEEEEeeccC-c---eeeeccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhhhHhcCcC
Confidence 35678999999 99999997432 2 588999999999999999997644 466777888764 4789999999998
Q ss_pred CCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 335 MPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 335 ~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
|+|||+|||+.++....|. .++++|++|..||+.+|+||++.
T Consensus 167 -~~VyA~GD~a~~~~~~~g~-~~i~~~~~A~~~gr~aa~ni~g~ 208 (213)
T d1m6ia1 167 -SNIWVAGDAACFYDIKLGR-RRVEHHDHAVVSGRLAGENMTGA 208 (213)
T ss_dssp -TTEEECGGGEEEEETTTEE-ECCCCHHHHHHHHHHHHHHHTSC
T ss_pred -CceEEeeeeeeeccccCCc-EEeeEhHHHHHHHHHHHHHhcCC
Confidence 9999999999987766554 46889999999999999999974
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.90 E-value=5.9e-24 Score=188.19 Aligned_cols=164 Identities=24% Similarity=0.353 Sum_probs=130.2
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH----------HHHHhcCcEEEEcCceEEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE----------QLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~----------~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
.+|+|||||++|+|+|..|++.|.+++++...++.+.....+.+...+. +.+...+|++++ +.+++++.
T Consensus 4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~v~~i~ 82 (183)
T d1d7ya1 4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLL-GVTAQSFD 82 (183)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEE-TCCEEEEE
T ss_pred CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEE-eccccccc
Confidence 4699999999999999999999988777665554433211122221111 233456899999 99999997
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc-----hhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS-----PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMY 352 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~-----~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~ 352 (489)
.. .. .+.+++|+++++|.+|+|+|..|++. +....++..+ ++|.||+++||+.|+|||+|||+..++...
T Consensus 83 ~~--~~--~~~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~-~~I~vd~~~~ts~~~IyA~GD~a~~~~~~~ 157 (183)
T d1d7ya1 83 PQ--AH--TVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACD-DGIFVDAYGRTTCPDVYALGDVTRQRNPLS 157 (183)
T ss_dssp TT--TT--EEEETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBS-SSEECCTTCBCSSTTEEECGGGEEEECTTT
T ss_pred cc--cc--eeEecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeC-CcEEeccceeccccccchhhhhhccceeeC
Confidence 43 32 46789999999999999999999754 4556677765 679999999999999999999999888777
Q ss_pred CcccccccHHHHHHHHHHHHHHHhc
Q 011267 353 DRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 353 ~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
|...++++|..|..||+.+|+||+.
T Consensus 158 g~~~~~~~~~~A~~qg~~aa~nil~ 182 (183)
T d1d7ya1 158 GRFERIETWSNAQNQGIAVARHLVD 182 (183)
T ss_dssp CSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred CceechhHHHHHHHHHHHHHHHHcC
Confidence 8878889999999999999999984
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.87 E-value=1.1e-21 Score=160.02 Aligned_cols=120 Identities=32% Similarity=0.529 Sum_probs=111.7
Q ss_pred CCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHH
Q 011267 178 PEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (489)
Q Consensus 178 p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~ 257 (489)
|++||.+.+ ++++++++|++++.+.+...++++|||||++|+|+|..|+++|.+|+++++.++++++.+++.+++.+.+
T Consensus 2 P~ipG~~~~-v~~lrtl~Da~~l~~~~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~ 80 (121)
T d1d7ya2 2 PTLQGATMP-VHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVAR 80 (121)
T ss_dssp GGGTTCSSC-EEECCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHH
T ss_pred ccCCCCCCC-EEEeCCHHHHHHHHHhhhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHHHH
Confidence 566787665 9999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
.++++||++++ ++.|+++.. + .++++||++++||.||+|+|
T Consensus 81 ~l~~~GV~i~~-~~~v~~~~~---~---~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRF-ERSVTGSVD---G---VVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEE-SCCEEEEET---T---EEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEe-CCEEEEEeC---C---EEEECCCCEEECCEEEEeeC
Confidence 99999999999 999999873 2 57899999999999999998
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.86 E-value=9.4e-22 Score=173.94 Aligned_cols=166 Identities=27% Similarity=0.430 Sum_probs=131.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh--------------hCHHHHHHHHHHHHhcCcEEEEcCc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL--------------FTPSLAQRYEQLYQQNGVKFVKVGA 271 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~--------------~~~~~~~~l~~~l~~~Gv~~~~~~~ 271 (489)
..++|+|||||++|+|+|..|+++|.+++++...+...... ................++.+.. +.
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLG-GT 80 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEEC-SC
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeec-cc
Confidence 36799999999999999999999999988776554321100 0111112233456677888888 88
Q ss_pred eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC---CCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccC
Q 011267 272 SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP---TVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFP 348 (489)
Q Consensus 272 ~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p---~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~ 348 (489)
.+..+... .. .+...+++++++|.+++++|.+| +..+++..++..+ +++.||+++||++|+|||+|||+..+
T Consensus 81 ~~~~~~~~--~~--~v~~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~-~~i~Vd~~~~ts~~~vya~GD~~~~~ 155 (185)
T d1q1ra1 81 QVTAINRD--RQ--QVILSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVD-NGIVINEHMQTSDPLIMAVGDCARFH 155 (185)
T ss_dssp CEEEEETT--TT--EEEETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEEE
T ss_pred eeeeeccc--cc--EEEeeceeEEEeeeeeeeeecccCCCCchhHHhCCcccc-CccccCCccccchhhhhcchhhhccc
Confidence 88888632 22 57788899999999999999876 5566778887765 78999999999999999999999998
Q ss_pred CccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 349 LKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 349 ~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
....+.+.++++|++|.+||+.+|+||++
T Consensus 156 ~~~~~~~~~~~~a~~A~~~g~~aa~~i~G 184 (185)
T d1q1ra1 156 SQLYDRWVRIESVPNALEQARKIAAILCG 184 (185)
T ss_dssp ETTTTEEEECCSHHHHHHHHHHHHHHHTT
T ss_pred cccCCcccchhhHHHHHHHHHHHHHHccC
Confidence 88888888888999999999999999986
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.86 E-value=1.8e-21 Score=169.24 Aligned_cols=153 Identities=25% Similarity=0.367 Sum_probs=121.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHH-------------HHHHHHHHHHhcCcEEEEcCceEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPS-------------LAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~-------------~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
.||+|||||++|+|+|..|++ +.+|+++++.+.+.. ..+. +.....+.+++.|+++++ ++.++
T Consensus 1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~v~ 76 (167)
T d1xhca1 1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYY--SKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRL-AEEAK 76 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCC--CSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEEC-SCCEE
T ss_pred CeEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccc--cccchhhhhhhhhhhhhhhHHHHHHHHhccceeee-ecccc
Confidence 379999999999999999976 679999998764321 1111 122234567788999999 99999
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCc
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDR 354 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~ 354 (489)
.++. +.+ +.+.+++++++|.+|+|+|..|+ ++++..|++.+ +++.||+++||+.|+|||+|||+..+...
T Consensus 77 ~i~~--~~~---~~~~~~~~i~~D~li~a~G~~~~-~~~~~~gl~~~-~~i~v~~~~~t~~~~i~aiGD~~~~~~~~--- 146 (167)
T d1xhca1 77 LIDR--GRK---VVITEKGEVPYDTLVLATGAPNV-DLARRSGIHTG-RGILIDDNFRTSAKDVYAIGDCAEYSGII--- 146 (167)
T ss_dssp EEET--TTT---EEEESSCEEECSEEEECCCEECC-HHHHHTTCCBS-SSEECCTTSBCSSTTEEECGGGEEBTTBC---
T ss_pred cccc--ccc---cccccccccccceeEEEEEecCC-chhhhcCceeC-CceeeccccEecCCCeEEeeecccCCCeE---
Confidence 9973 232 44567778999999999999775 78899999887 46999999999999999999999876543
Q ss_pred ccccccHHHHHHHHHHHHHHHhc
Q 011267 355 TARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 355 ~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+..+..|.++|+.+|+||++
T Consensus 147 ---~~~~~~a~~~a~~~a~~i~G 166 (167)
T d1xhca1 147 ---AGTAKAAMEQARVLADILKG 166 (167)
T ss_dssp ---CCSHHHHHHHHHHHHHHHTT
T ss_pred ---EChHHHHHHHHHHHHHHcCC
Confidence 34677899999999999975
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.85 E-value=1.4e-21 Score=175.02 Aligned_cols=166 Identities=21% Similarity=0.310 Sum_probs=124.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcch------hhhh------CHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLL------QRLF------TPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l------~~~~------~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
||+|||||++|+|+|..|++++. +|+++++.+.+. +..+ .+.+.....+.++++||++++ +++|+
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~-~~~V~ 80 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFS-NTEIT 80 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEE-TEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEE-eecee
Confidence 69999999999999999998754 689998876541 1100 011122234678889999999 99999
Q ss_pred EEEeCCCCcEEEEEeCCCc--EEEcCEEEEccCCCC--------CCchhhhcCCee-cCCcEEeCCCCCCCCCCeEEecc
Q 011267 275 NLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKP--------TVSPFERVGLNS-SVGGIQVDGQFRTRMPGIFAIGD 343 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~--~i~aD~vi~a~G~~p--------~~~~~~~~gl~~-~~g~i~vd~~~~t~~~~Iya~GD 343 (489)
+++.+ +..+..-.+.+|+ ++++|.+|+++|..| ++.+++. ++.. ++|+|.||+++||+.|+|||+||
T Consensus 81 ~i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~-~~~~~~~G~i~vd~~~~T~~~~IyA~GD 158 (198)
T d1nhpa1 81 AIQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKG-TLELHPNGLIKTDEYMRTSEPDVFAVGD 158 (198)
T ss_dssp EEETT-TTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTT-TSCBCTTSCBCCCTTCBCSSTTEEECGG
T ss_pred eEeec-cccceeeecccccccccccceeeEeecceeecccccccccccccc-cceeccCCceecCCcccccccceEEecc
Confidence 99843 3333222245554 588999999998764 4455555 4444 46789999999999999999999
Q ss_pred ccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 344 VAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
|+..+....+...+++++..|..+|+.+|+||.+
T Consensus 159 ~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~~ 192 (198)
T d1nhpa1 159 ATLIKYNPADTEVNIALATNARKQGRFAVKNLEE 192 (198)
T ss_dssp GSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSSS
T ss_pred eeecccccCCCcccccHHHHHHHHHHHHHHhhCC
Confidence 9987766656666677899999999999999875
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.84 E-value=7.5e-21 Score=157.89 Aligned_cols=120 Identities=33% Similarity=0.617 Sum_probs=112.6
Q ss_pred CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCc
Q 011267 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (489)
Q Consensus 185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv 264 (489)
.++++++++++|++++++.+..+++++|||||++|+|+|..|++.|.+|+++++.++++++.+++.+++.+.+.++++||
T Consensus 13 ~~~v~~lr~~~d~~~l~~~~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV 92 (133)
T d1q1ra2 13 ANNFRYLRTLEDAECIRRQLIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGV 92 (133)
T ss_dssp STTEEESSSHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTC
T ss_pred cCCeeEeCCHHHHHHHHHhhccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhccccccc
Confidence 56899999999999999998889999999999999999999999999999999999999988999999999999999999
Q ss_pred EEEEcCceEEEEEeCC-CCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 265 KFVKVGASIKNLEAGS-DGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 265 ~~~~~~~~v~~i~~~~-~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
++++ ++.|++++... ++.+..+.+++|++++||.||+|+|
T Consensus 93 ~i~~-~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 93 DIRT-GTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEC-SCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EEEe-CCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 9999 99999998653 4567789999999999999999998
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.82 E-value=1.4e-19 Score=148.04 Aligned_cols=121 Identities=26% Similarity=0.363 Sum_probs=108.5
Q ss_pred CCCCCCCceEeecCHHHHHHHHHhhc--CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHH
Q 011267 180 KIGGYLPGVHYIRDVADADALISSLE--KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQ 257 (489)
Q Consensus 180 ~~g~~~~gv~~~~~~~~~~~~~~~~~--~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~ 257 (489)
+||.++++++++++.+++.++++.+. ..++++|||+|++|+|+|..|+++|.+||++++.++++++.+++++++.+++
T Consensus 1 IPG~d~~~v~~~~~~~da~~i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~ 80 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE 80 (123)
T ss_dssp STTTTSBSEECCCHHHHHHHHHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH
T ss_pred CcCCCCCCeEEeCCHHHHHHHHHHhhccCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHH
Confidence 36777899999999999999988764 4689999999999999999999999999999999999998899999999999
Q ss_pred HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEcc
Q 011267 258 LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 304 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~ 304 (489)
.++++||++++ ++.+++++. ++.+..+ +.+|++++||.||+|+
T Consensus 81 ~l~~~gv~~~~-~~~v~~i~~--~~~~~~v-~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 81 EMEANNITIAT-GETVERYEG--DGRVQKV-VTDKNAYDADLVVVAV 123 (123)
T ss_dssp HHHTTTEEEEE-SCCEEEEEC--SSBCCEE-EESSCEEECSEEEECS
T ss_pred HhhcCCeEEEe-CceEEEEEc--CCCEEEE-EeCCCEEECCEEEEEC
Confidence 99999999999 999999984 3454444 6788899999999984
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.77 E-value=9.9e-19 Score=142.84 Aligned_cols=118 Identities=23% Similarity=0.422 Sum_probs=105.4
Q ss_pred CCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHH
Q 011267 177 FPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYE 256 (489)
Q Consensus 177 ~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~ 256 (489)
.|++|| .+.+++++++.+++++.+.+..+++++|||||++|+|+|..|.++|.+|+++++.+++++ +++++++.+.
T Consensus 4 ~p~ipG--~e~~~t~~~~~d~~~l~~~~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~--~d~~~~~~~~ 79 (122)
T d1xhca2 4 EPQIKG--KEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG--LDEELSNMIK 79 (122)
T ss_dssp CCCSBT--GGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT--CCHHHHHHHH
T ss_pred CcCCCC--ccceEccCCHHHHHHHHHHhhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccC--CCHHHHHHHH
Confidence 356677 357889999999999999888899999999999999999999999999999999999885 7999999999
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
+.++++||++++ +++++++..+ .+ +.+++++++|.||+|+|.
T Consensus 80 ~~l~~~GV~~~~-~~~v~~~~~~------~v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 80 DMLEETGVKFFL-NSELLEANEE------GV-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHHHHTTEEEEC-SCCEEEECSS------EE-EETTEEEECSCEEEECCE
T ss_pred HHHHHCCcEEEe-CCEEEEEeCC------EE-EeCCCEEECCEEEEEEEe
Confidence 999999999999 9999999632 23 457778999999999995
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=2.2e-18 Score=143.80 Aligned_cols=118 Identities=24% Similarity=0.480 Sum_probs=107.5
Q ss_pred CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHH----hCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAV----GWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~----~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
+.++++++++|+.++.+.+...++++|||||++|+|+|..|. +.|.+|+++++.++++++.+++++++.+.+.+++
T Consensus 16 ~~~~~~r~~~d~~~l~~~~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~ 95 (137)
T d1m6ia2 16 SRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRR 95 (137)
T ss_dssp HTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEcCHHHHHHHHHHhhcCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHh
Confidence 457889999999999998888999999999999999999995 4689999999999999988999999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
+||++++ ++.|++++.+ ++.+ .+.+++|++++||.||+|+|+
T Consensus 96 ~GV~~~~-~~~V~~i~~~-~~~~-~v~l~~G~~i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 96 EGVKVMP-NAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGL 137 (137)
T ss_dssp TTCEEEC-SCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCE
T ss_pred CCcEEEe-CCEEEEEEec-CCEE-EEEECCCCEEECCEEEEeecC
Confidence 9999999 9999999854 3443 689999999999999999994
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=2.8e-18 Score=138.66 Aligned_cols=106 Identities=25% Similarity=0.448 Sum_probs=95.2
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
++.+...-..+++++|||+|++|+|+|..|+++|.+||++++.+++++. +++++++++.+.++++||++++ ++.|+++
T Consensus 11 ~~~~~~l~~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~-~d~~~~~~~~~~l~~~GV~~~~-~~~v~~i 88 (116)
T d1gesa2 11 SDGFFALPALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPS-FDPMISETLVEVMNAEGPQLHT-NAIPKAV 88 (116)
T ss_dssp HHHHHHCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHSCEEEC-SCCEEEE
T ss_pred HHHHhChhhCCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhh-cchhhHHHHHHHHHHCCCEEEe-CCEEEEE
Confidence 3444444456899999999999999999999999999999999999984 8999999999999999999999 9999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 277 EAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
...+++.+ .+.+++|+++++|.||+|+|
T Consensus 89 ~~~~~~~~-~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 89 VKNTDGSL-TLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred EEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence 87766665 58899999999999999998
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.72 E-value=5.6e-17 Score=147.17 Aligned_cols=156 Identities=28% Similarity=0.358 Sum_probs=113.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------------------hh--------hhh------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------------------LQ--------RLF------ 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------------------l~--------~~~------ 247 (489)
..++|||+|+.|+++|..+++.|.+|+++++...- .. ..+
T Consensus 4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDFAKVQ 83 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECHHHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCCCCcceeccccccccccccccchhhhhhhhhhhcccchhheeeHHHHh
Confidence 46899999999999999999999999999865310 00 000
Q ss_pred ------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEcc--------CCCCCCch-
Q 011267 248 ------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGI--------GAKPTVSP- 312 (489)
Q Consensus 248 ------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~--------G~~p~~~~- 312 (489)
-..+...+...++..||+++. +. ..+.. ..........++.++.++.+|+++ |++|+++.
T Consensus 84 ~~~~~~v~~l~~~~~~~~~~~~V~~i~-G~--a~f~~--~~~~~v~~~~~~~~~~~~~iiIa~g~~p~~~~G~~p~~~~l 158 (223)
T d1ebda1 84 EWKASVVKKLTGGVEGLLKGNKVEIVK-GE--AYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELVGRRPNTDEL 158 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEE-SE--EEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBSCEEESCSSS
T ss_pred hHHHHHHHHHHhhHHHhhhccceeeec-cE--EEEcc--CcccceeccccceEEecccEEEEcCCCccccccceecCCCC
Confidence 012233445567778999988 63 23332 222222223344679999999985 88898875
Q ss_pred -hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 313 -FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 313 -~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
++++|++.+ +|.|.||+++|||+|+|||+|||+..+. ....|..+|+.||.+|++.
T Consensus 159 ~l~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------~~~~A~~~g~~aa~~i~g~ 216 (223)
T d1ebda1 159 GLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIGDIVPGPA----------LAHKASYEGKVAAEAIAGH 216 (223)
T ss_dssp STTTTTCCBCTTSCBCCCTTCBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHTSC
T ss_pred ChHhcCceECCCCCEeECCCCCCCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence 688999886 6779999999999999999999987643 3345889999999999964
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.71 E-value=5.3e-17 Score=151.25 Aligned_cols=152 Identities=19% Similarity=0.292 Sum_probs=107.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh-------------------------------------hCH-H
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-------------------------------------FTP-S 250 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-------------------------------------~~~-~ 250 (489)
.++|||+|+.|+++|..++++|.+|+++++.+.+...+ ... .
T Consensus 44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (261)
T d1mo9a1 44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEKVVGIKE 123 (261)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTCCCCHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccccccccchHHHHhhHHhHHHHHHhhhhccccccccccccHHH
Confidence 59999999999999999999999999999876541100 000 0
Q ss_pred HHH------------HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch------
Q 011267 251 LAQ------------RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP------ 312 (489)
Q Consensus 251 ~~~------------~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~------ 312 (489)
..+ ...+.++..++..+. +...+-+. .. .+. .+|++++||.||+|+|.+|+++.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~d---~~---~v~-~~g~~i~ad~viiAtG~~P~~~~i~~~~~ 195 (261)
T d1mo9a1 124 VVDLFRAGRNGPHGIMNFQSKEQLNLEYIL-NCPAKVID---NH---TVE-AAGKVFKAKNLILAVGAGPGTLDVPEQPR 195 (261)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTSCCCEEE-SSCCEEEE---TT---EEE-ETTEEEEBSCEEECCCEECCCCCSTCEEC
T ss_pred HHHHHHHHHHhhhhhHHHHhhhcccceeEe-eeEEEEee---ec---ccc-cccceEeeeeeeeccCCCCCcCccccccc
Confidence 000 011223334444444 33333222 11 122 36789999999999999998753
Q ss_pred ----hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 313 ----FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 313 ----~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
.+.+|++.+ +|.|.||++|||++|+|||+|||+..+. ....|..+|+.||.||++.
T Consensus 196 ~~~l~~~~Gl~~~~~G~I~Vn~~~~Ts~~~IyA~GDv~~~~~----------l~~~A~~~G~~aa~~i~G~ 256 (261)
T d1mo9a1 196 SAELAKILGLDLGPKGEVLVNEYLQTSVPNVYAVGDLIGGPM----------EMFKARKSGCYAARNVMGE 256 (261)
T ss_dssp CHHHHHHHTCCBCTTSCBCCCTTSBCSSTTEEECGGGGCSSC----------SHHHHHHHHHHHHHHHTTC
T ss_pred ccccccceeeeeccCCEEEeCCCcccCCCCEEEEEEeCCCcc----------cHHHHHHHHHHHHHHHCCC
Confidence 345688886 5779999999999999999999987653 3445999999999999963
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.71 E-value=5.3e-17 Score=130.98 Aligned_cols=98 Identities=24% Similarity=0.432 Sum_probs=89.4
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCc
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGR 283 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~ 283 (489)
++.+++++|||||++|+|+|..|+++|.+|+++++.+++++ .+++++++.+.+.++++||++++ +++|++++..+++.
T Consensus 19 l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~-~~d~~~~~~~~~~l~~~gV~i~~-~~~v~~i~~~~~~~ 96 (117)
T d1onfa2 19 IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILR-KFDESVINVLENDMKKNNINIVT-FADVVEIKKVSDKN 96 (117)
T ss_dssp CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCT-TSCHHHHHHHHHHHHHTTCEEEC-SCCEEEEEESSTTC
T ss_pred cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccc-cccHHHHHHHHHHHHhCCCEEEE-CCEEEEEEEcCCCe
Confidence 35689999999999999999999999999999999999997 58999999999999999999999 99999998776665
Q ss_pred EEEEEeCCCcEEE-cCEEEEcc
Q 011267 284 VAAVKLEDGSTID-ADTIVIGI 304 (489)
Q Consensus 284 v~~v~~~~g~~i~-aD~vi~a~ 304 (489)
+ .+.+++|+++. +|.||+|+
T Consensus 97 ~-~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 97 L-SIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp E-EEEETTSCEEEEESEEEECC
T ss_pred E-EEEECCCCEEEeCCEEEEeC
Confidence 5 68999998875 79999985
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.71 E-value=5.1e-17 Score=131.60 Aligned_cols=107 Identities=22% Similarity=0.416 Sum_probs=92.8
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhC---CCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGW---KLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~---g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++.++..-..+++++|||||++|+|+|..+.++ |.+|+++++.+++++ .+++++++.+++.++++||++++ ++.|
T Consensus 8 s~~~~~l~~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~-~~d~~~~~~~~~~l~~~GI~v~~-~~~v 85 (117)
T d1feca2 8 SNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILR-GFDSELRKQLTEQLRANGINVRT-HENP 85 (117)
T ss_dssp HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTEEEEE-TCCE
T ss_pred hHHhhCccccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccc-cccchhhHHHHHHHhhCcEEEEc-CCEE
Confidence 344444445679999999999999999876654 889999999999997 48999999999999999999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA 306 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~ 306 (489)
++++..+++. ..+.+++|++++||.||+|+|+
T Consensus 86 ~~i~~~~~g~-~~v~~~~g~~i~~D~Vi~a~GR 117 (117)
T d1feca2 86 AKVTKNADGT-RHVVFESGAEADYDVVMLAIGR 117 (117)
T ss_dssp EEEEECTTSC-EEEEETTSCEEEESEEEECSCE
T ss_pred EEEEECCCCE-EEEEECCCCEEEcCEEEEecCC
Confidence 9998765555 4689999999999999999995
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.70 E-value=7.4e-17 Score=146.22 Aligned_cols=156 Identities=27% Similarity=0.458 Sum_probs=113.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------------------------------------hh----
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------LF---- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------~~---- 247 (489)
-.++|||+|+.|+++|..++++|.+|+++++.+.+-.. .+
T Consensus 4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~ 83 (221)
T d1dxla1 4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVEIDLAA 83 (221)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEEECHHH
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccceecHHH
Confidence 46899999999999999999999999999987543100 00
Q ss_pred --------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE-EEEeCCCcEEEcCEEEEccC-----CCCCCch-
Q 011267 248 --------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA-AVKLEDGSTIDADTIVIGIG-----AKPTVSP- 312 (489)
Q Consensus 248 --------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~-~v~~~~g~~i~aD~vi~a~G-----~~p~~~~- 312 (489)
-..+...+...++..+|+++. +. ..-.. ..... ......+.++.+|.||+||| +.|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~i~-~~-~~~~~---~~~~~~~~~~~~~~~~~a~~VIiATGs~~~gr~p~~~~l 158 (221)
T d1dxla1 84 MMGQKDKAVSNLTRGIEGLFKKNKVTYVK-GY-GKFVS---PSEISVDTIEGENTVVKGKHIIIATGSDVKGRTPFTSGL 158 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEE-SC-EEEEE---TTEEEECCSSSCCEEEECSEEEECCCEEECCEEECCTTS
T ss_pred HHHHHHHHHHHHhhHHHHhhhcCCeEEEE-ec-ccccc---ccccccccccccccccccceEEEeECCCccCccccCCCC
Confidence 012234455667778899887 43 22222 11111 11223345789999999998 5678774
Q ss_pred -hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 313 -FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 313 -~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
++++|++.+ +|.|.||+++||++|+|||+|||+..+. .+..|..+|+.+|.+|++.
T Consensus 159 ~l~~~gv~~~~~G~i~vd~~~~T~v~gi~A~GDv~~g~~----------l~~~A~~~g~~aa~~i~g~ 216 (221)
T d1dxla1 159 NLDKIGVETDKLGRILVNERFSTNVSGVYAIGDVIPGPM----------LAHKAEEDGVACVEYLAGK 216 (221)
T ss_dssp CCTTTTCCBCSSSCBCCCTTCBCSSTTEEECSTTSSSCC----------CHHHHHHHHHHHHHHHTTS
T ss_pred ChHhcCceEcCCCcEEeCCCcccCCCCEEEEeccCCCcc----------cHHHHHHHHHHHHHHHcCC
Confidence 578899986 5779999999999999999999997553 3445889999999999863
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.69 E-value=7.8e-17 Score=130.32 Aligned_cols=105 Identities=24% Similarity=0.453 Sum_probs=91.2
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCC---CcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASI 273 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g---~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v 273 (489)
++.++.....+++++|||||++|+|+|..+..++ .+|+++++.+++++ .+++++++.+.+.++++||++++ ++++
T Consensus 10 ~~~~~~l~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~-~~d~~~~~~l~~~l~~~GV~v~~-~~~v 87 (117)
T d1aoga2 10 SNEAFYLPEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILR-GFDHTLREELTKQLTANGIQILT-KENP 87 (117)
T ss_dssp HHHHTTCSSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSST-TSCHHHHHHHHHHHHHTTCEEEE-SCCE
T ss_pred HHHHhCchhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhc-ccchHHHHHHHHHHHhcCcEEEc-CCEE
Confidence 4445544456799999999999999998877654 47999999999997 58999999999999999999999 9999
Q ss_pred EEEEeCCCCcEEEEEeCCCcEEEcCEEEEcc
Q 011267 274 KNLEAGSDGRVAAVKLEDGSTIDADTIVIGI 304 (489)
Q Consensus 274 ~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~ 304 (489)
++++..+++.+ .+.+++|++++||.||+|+
T Consensus 88 ~~ie~~~~~~~-~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 88 AKVELNADGSK-SVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp EEEEECTTSCE-EEEETTSCEEEESEEEECS
T ss_pred EEEEEcCCCeE-EEEECCCcEEEeCEEEEeC
Confidence 99987666665 5899999999999999985
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=1e-16 Score=130.50 Aligned_cols=105 Identities=17% Similarity=0.365 Sum_probs=91.9
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
++.+++.-..+++++|||+|++|+|+|..|.++|.+||++++.+++++. +++++++.+++.++++||++++ +++|+++
T Consensus 13 s~~~~~l~~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~-~d~ei~~~l~~~l~~~GV~i~~-~~~v~~v 90 (122)
T d1v59a2 13 STGALSLKEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGAS-MDGEVAKATQKFLKKQGLDFKL-STKVISA 90 (122)
T ss_dssp HHHHTTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSS-SCHHHHHHHHHHHHHTTCEEEC-SEEEEEE
T ss_pred hHHhhCcccCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchh-hhhhhHHHHHHHHHhccceEEe-CCEEEEE
Confidence 4445554456899999999999999999999999999999999999985 8999999999999999999999 9999999
Q ss_pred EeCCCCcEEEEEeCCC-----cEEEcCEEEEc
Q 011267 277 EAGSDGRVAAVKLEDG-----STIDADTIVIG 303 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g-----~~i~aD~vi~a 303 (489)
+..+++....+++.++ ++++||.|++|
T Consensus 91 ~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 91 KRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp EEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred EEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 8877776666776554 37999999986
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.68 E-value=1.8e-16 Score=128.49 Aligned_cols=106 Identities=20% Similarity=0.377 Sum_probs=91.5
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+++.+++.-..+++++|||||++|+|+|..|+++|.+|+++++.+++++. +++++++.+++.++++||++++ ++++++
T Consensus 11 ~s~~~l~l~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~-~d~ei~~~l~~~l~~~Gv~i~~-~~~v~~ 88 (119)
T d3lada2 11 DSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILL-GARVTG 88 (119)
T ss_dssp EHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTEEEEE-TCEEEE
T ss_pred chhHhhCcccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCc-ccchhHHHHHHHHHhcCceeec-CcEEEE
Confidence 35555555567899999999999999999999999999999999999984 8999999999999999999999 999999
Q ss_pred EEeCCCCcEEEEEeCCC---cEEEcCEEEEccC
Q 011267 276 LEAGSDGRVAAVKLEDG---STIDADTIVIGIG 305 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g---~~i~aD~vi~a~G 305 (489)
++..+++. .+++.++ +++.||.|++|+|
T Consensus 89 i~~~~~~v--~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 89 TEVKNKQV--TVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEECSSCE--EEEEESSSEEEEEEESEEEECSC
T ss_pred EEEeCCEE--EEEEEECCCCEEEECCEEEEeeC
Confidence 98765442 3444433 5799999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.68 E-value=6.2e-17 Score=132.04 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=92.9
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+++.+.+.-..+++++|||+|++|+|+|..++++|.+|+++++.+++++. +|+++++.+.+.++++||++++ ++.+++
T Consensus 15 ts~~~l~l~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~-~d~~~~~~l~~~l~~~gv~~~~-~~~v~~ 92 (125)
T d1ojta2 15 DSSGALALKEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNEYRFDNIMV-NTKTVA 92 (125)
T ss_dssp CHHHHTTCCCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHGGGEEEEEC-SCEEEE
T ss_pred cHHHhhCccccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeecccccc-chhhHHHHHHHHHHHcCccccc-CcEEEE
Confidence 35555555567899999999999999999999999999999999999985 7999999999999999999999 999999
Q ss_pred EEeCCCCcEEEEEeCCC--cEEEcCEEEEccCC
Q 011267 276 LEAGSDGRVAAVKLEDG--STIDADTIVIGIGA 306 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~ 306 (489)
++..+++....+...+| ++++||.|++|+|+
T Consensus 93 v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 93 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred EEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence 98766554333333444 47999999999995
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.67 E-value=2.1e-16 Score=128.83 Aligned_cols=114 Identities=22% Similarity=0.333 Sum_probs=95.6
Q ss_pred CCCceEeecCHHHHHHHHHhh--cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh
Q 011267 184 YLPGVHYIRDVADADALISSL--EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ 261 (489)
Q Consensus 184 ~~~gv~~~~~~~~~~~~~~~~--~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~ 261 (489)
+.++++...++ .+.+ ..+++++|||||++|+|+|..|+++|.+|+++++.+++++ .+++++++.+.+.+++
T Consensus 3 ~~~gv~~~~~~------~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~-~~d~~~~~~~~~~l~~ 75 (121)
T d1mo9a2 3 NAKGVFDHATL------VEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKL-IKDNETRAYVLDRMKE 75 (121)
T ss_dssp TSBTEEEHHHH------HHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-CCSHHHHHHHHHHHHH
T ss_pred CCCCEEeHHHH------HHHHhhCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhc-ccccchhhhhhhhhhc
Confidence 45677754332 2222 3578999999999999999999999999999999999997 5899999999999999
Q ss_pred cCcEEEEcCceEEEEEeCCCCcEEEEE---eCCCcEEEcCEEEEccC
Q 011267 262 NGVKFVKVGASIKNLEAGSDGRVAAVK---LEDGSTIDADTIVIGIG 305 (489)
Q Consensus 262 ~Gv~~~~~~~~v~~i~~~~~~~v~~v~---~~~g~~i~aD~vi~a~G 305 (489)
+||++++ ++.+++++.++++.+..+. ..++++++||.||+|+|
T Consensus 76 ~gI~v~~-~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 76 QGMEIIS-GSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp TTCEEES-SCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred cccEEEc-CCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 9999999 9999999987777654443 34557899999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.66 E-value=4.1e-16 Score=126.12 Aligned_cols=104 Identities=32% Similarity=0.505 Sum_probs=88.8
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+++.+...-..+++++|||||++|+|+|..+.++|.+||++++.+++++. +++++++.+.+.++++||++++ +++|++
T Consensus 11 ~s~~~l~~~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~GI~i~~-~~~v~~ 88 (117)
T d1ebda2 11 DSTGALNLGEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSG-FEKQMAAIIKKRLKKKGVEVVT-NALAKG 88 (117)
T ss_dssp CHHHHHTCSSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT-SCHHHHHHHHHHHHHTTCEEEE-SEEEEE
T ss_pred ChhHhhChhhcCCeEEEECCCccceeeeeeecccccEEEEEEecceeccc-ccchhHHHHHHHHHhcCCEEEc-CCEEEE
Confidence 45666665567899999999999999999999999999999999999985 8999999999999999999999 999999
Q ss_pred EEeCCCCcEEEEEe-CCC--cEEEcCEEEEc
Q 011267 276 LEAGSDGRVAAVKL-EDG--STIDADTIVIG 303 (489)
Q Consensus 276 i~~~~~~~v~~v~~-~~g--~~i~aD~vi~a 303 (489)
++..+++.. +.+ .+| ++++||.||++
T Consensus 89 i~~~~~~~~--v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 89 AEEREDGVT--VTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp EEEETTEEE--EEEEETTEEEEEEESEEEEC
T ss_pred EEEcCCEEE--EEEEeCCCEEEEEeEEEEEC
Confidence 986655432 333 344 56999999974
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=4.7e-16 Score=127.16 Aligned_cols=107 Identities=22% Similarity=0.388 Sum_probs=89.2
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
.+.++..-..+++++|||||++|+|+|..|+++|.+|+++++++++++. +|+++++.+.+.++++||++++ +++++++
T Consensus 12 s~~~~~l~~~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~-~d~~~~~~~~~~l~~~Gv~i~~-~~~v~~i 89 (125)
T d3grsa2 12 SDGFFQLEELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRS-FDSMISTNCTEELENAGVEVLK-FSQVKEV 89 (125)
T ss_dssp HHHHTTCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT-SCHHHHHHHHHHHHHTTCEEET-TEEEEEE
T ss_pred HHHHhChhhcCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccc-hhhHHHHHHHHHHHHCCCEEEe-CCEEEEE
Confidence 4444443445799999999999999999999999999999999999985 8999999999999999999999 9999999
Q ss_pred EeCCCCcEE-EEEeCCCc------EEEcCEEEEccC
Q 011267 277 EAGSDGRVA-AVKLEDGS------TIDADTIVIGIG 305 (489)
Q Consensus 277 ~~~~~~~v~-~v~~~~g~------~i~aD~vi~a~G 305 (489)
+..+++... .+...+|+ .++||.|++|+|
T Consensus 90 ~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 90 KKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp EEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred EEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 876655322 23334442 578999999998
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.64 E-value=2.4e-16 Score=127.02 Aligned_cols=105 Identities=20% Similarity=0.383 Sum_probs=86.4
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
++.....-..+++++|||||++|+|+|..|+++|.+||++++.++++++ +++++++.+.+.++++||++++ +++|+++
T Consensus 11 s~~~l~~~~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~-~d~~~~~~l~~~l~~~gV~i~~-~~~V~~i 88 (115)
T d1lvla2 11 STEALAPKALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSELTAPVAESLKKLGIALHL-GHSVEGY 88 (115)
T ss_dssp HHHHTCCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTT-SCHHHHHHHHHHHHHHTCEEET-TCEEEEE
T ss_pred ChHHhCcccCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecccccc-ccchhHHHHHHHHHhhcceEEc-CcEEEEE
Confidence 3344444456799999999999999999999999999999999999985 8999999999999999999999 9999999
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEccC
Q 011267 277 EAGSDGRVAAVKLEDGSTIDADTIVIGIG 305 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g~~i~aD~vi~a~G 305 (489)
+ ++..+......++++++||.||+|+|
T Consensus 89 ~--~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 89 E--NGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp E--TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred c--CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 6 22222111122335799999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.64 E-value=4.4e-16 Score=126.91 Aligned_cols=107 Identities=21% Similarity=0.421 Sum_probs=91.4
Q ss_pred HHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 196 DADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 196 ~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+++.++..-..+++++|||+|++|+|+|..+.++|.+||++++.+++++ .+++++.+.+.+.+++.||++++ |+++++
T Consensus 14 ts~~~l~l~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~-~~d~~~~~~l~~~l~~~GI~i~~-~~~v~~ 91 (123)
T d1dxla2 14 SSTGALALSEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP-TMDAEIRKQFQRSLEKQGMKFKL-KTKVVG 91 (123)
T ss_dssp CHHHHTTCSSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST-TSCHHHHHHHHHHHHHSSCCEEC-SEEEEE
T ss_pred eHHHhhCccccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCc-hhhhcchhhhhhhhhcccceEEc-CCceEE
Confidence 3555665556789999999999999999999999999999999999997 58999999999999999999999 999999
Q ss_pred EEeCCCCcEEEEEeCC-C--cEEEcCEEEEcc
Q 011267 276 LEAGSDGRVAAVKLED-G--STIDADTIVIGI 304 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~-g--~~i~aD~vi~a~ 304 (489)
++..+++....+...+ | ++++||.|++|.
T Consensus 92 i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 92 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 123 (123)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred EEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence 9976666544555543 3 358999999873
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.63 E-value=1.1e-15 Score=133.76 Aligned_cols=158 Identities=23% Similarity=0.292 Sum_probs=112.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCC--cEEEEccCCcchhhhhCHHHHH---------HHHHHHHhcCcEEEEcCceEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKL--DTTIIFPENHLLQRLFTPSLAQ---------RYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~--~V~lv~~~~~~l~~~~~~~~~~---------~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
+|||+|||||++|+|+|..|++++. +|+++++.+.++.....+.... .....+...++.++. + .+..
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~-~~~~ 79 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVH-D-SATG 79 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEEC-C-CEEE
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEee-e-eeEe
Confidence 7899999999999999999999875 7899999886654322221111 112344567788776 4 4444
Q ss_pred EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhh--------cCCeecCCcEEeCCC-C-CCCCCCeEEecccc
Q 011267 276 LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFER--------VGLNSSVGGIQVDGQ-F-RTRMPGIFAIGDVA 345 (489)
Q Consensus 276 i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~--------~gl~~~~g~i~vd~~-~-~t~~~~Iya~GD~a 345 (489)
+. .... .+.+.+++++++|.+|+|+|.+|++.++.. .++..+.+.+.++.+ + .++.++||++||++
T Consensus 80 ~~--~~~~--~~~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iGd~~ 155 (186)
T d1fcda1 80 ID--PDKK--LVKTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHVIGDAS 155 (186)
T ss_dssp CC--TTTT--EEEETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEECTTSE
T ss_pred ee--eccc--eeecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceEecccc
Confidence 43 2222 467788999999999999999999765443 244455567777664 3 35899999999999
Q ss_pred ccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 346 AFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
..... +.++..|..+|+.+|.||+.
T Consensus 156 ~~~~~-------p~~~~~A~~q~~~~A~ni~~ 180 (186)
T d1fcda1 156 IANPM-------PKSGYSANSQGKVAAAAVVV 180 (186)
T ss_dssp ECTTC-------CSSHHHHHHHHHHHHHHHHH
T ss_pred ccCCC-------CchHhHHHHHHHHHHHHHHH
Confidence 65321 23567799999999999874
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.6e-15 Score=137.24 Aligned_cols=154 Identities=22% Similarity=0.366 Sum_probs=109.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc--------------hh--------------------hhhC------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL--------------LQ--------------------RLFT------ 248 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~--------------l~--------------------~~~~------ 248 (489)
.++|||+|+.|+++|..++++|.+|.++++...- +. ..++
T Consensus 5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAAELGARAAVVESHKLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNWRVIKE 84 (221)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCCCHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccCCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccchhhhhhhh
Confidence 4899999999999999999999999999865310 00 0000
Q ss_pred ------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC--------ch--
Q 011267 249 ------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV--------SP-- 312 (489)
Q Consensus 249 ------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~--------~~-- 312 (489)
..+.....+.++..||+++. +.-... ....+ .+. ....++.++.+++++|..|.. +.
T Consensus 85 ~~~~~v~~~~~~~~~~~~~~gV~~i~-G~a~~~----~~~~~-~~~-~~~~~~~~~~~~iatG~~p~vp~~r~p~~~~l~ 157 (221)
T d3grsa1 85 KRDAYVSRLNAIYQNNLTKSHIEIIR-GHAAFT----SDPKP-TIE-VSGKKYTAPHILIATGGMPSTPHERVPNTKDLS 157 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEE-SCCEEC----SCSSC-EEE-ETTEEEECSCEEECCCEEECCCCTEEESCTTTT
T ss_pred hhheEEeeeccchhhhhccCceEEEE-Eeeeec----cccce-eee-eeccccccceeEEecCccccCCCccccCCCCcC
Confidence 11223445567889999988 642211 11111 122 233578999999999965543 32
Q ss_pred hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 313 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 313 ~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
|++.|++.+ +|+|.||+++||++|+|||+|||+..+. ....|..+|+.+|++|.+..
T Consensus 158 L~~~gv~~~~~G~I~vd~~~~T~~~gvyA~GDv~~~~~----------l~~~A~~~G~~aa~~~~~~~ 215 (221)
T d3grsa1 158 LNKLGIQTDDKGHIIVDEFQNTNVKGIYAVGDVCGKAL----------LTPVAIAAGRKLAHRLFEYK 215 (221)
T ss_dssp GGGTTCCBCTTSCBCCCTTCBCSSTTEEECGGGGTSSC----------CHHHHHHHHHHHHHHHHSCC
T ss_pred chhcCcEECCCccEEeCCCccccCCcEEEEEEccCCcC----------cHHHHHHHHHHHHHHHcCCC
Confidence 678889886 5779999999999999999999987432 33458999999999999744
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.63 E-value=1.5e-15 Score=138.62 Aligned_cols=161 Identities=23% Similarity=0.332 Sum_probs=110.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC---CcEEEEccCCc--------------chh---------h-------------hhC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK---LDTTIIFPENH--------------LLQ---------R-------------LFT 248 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g---~~V~lv~~~~~--------------~l~---------~-------------~~~ 248 (489)
.+|+|||+|+.|+.+|..+++++ .+|+++++..- ++. + .++
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~~GG~cln~GciPsK~ll~~a~~~~~~~~~~~~G~~i~~~~~~~d 81 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDGIGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKIS 81 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSCTTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CBC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCCCCceeecccccccEEEEeecchhhhhhhhhhcCCcccccCceee
Confidence 37999999999999998877665 46889986531 000 0 000
Q ss_pred ------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC--CCcEEEEEeCCCc--EEEcCEEEEccCCCCCCc-
Q 011267 249 ------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS--DGRVAAVKLEDGS--TIDADTIVIGIGAKPTVS- 311 (489)
Q Consensus 249 ------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~--~~~v~~v~~~~g~--~i~aD~vi~a~G~~p~~~- 311 (489)
......+...++..||+++. +... -+.... ......+...+|+ ++++|.+|+++|..|...
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~~~~~gV~vi~-G~~~-~~~~~~~~~~~~v~v~~~dg~~~~i~ad~viiAtG~~p~~~~ 159 (233)
T d1xdia1 82 LPQIHARVKTLAAAQSADITAQLLSMGVQVIA-GRGE-LIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASPRILP 159 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE-SEEE-ECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEECCCG
T ss_pred eeeeccccceeeeeeecceehhhcccceeEEE-Cccc-ccccccccccceEEEEecCCceeeeecceeeeecCccccccc
Confidence 01112355667888999988 6322 111111 1122356666764 699999999999988643
Q ss_pred ----------hhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCCC
Q 011267 312 ----------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQT 380 (489)
Q Consensus 312 ----------~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~~ 380 (489)
-++..+++.+ +|.|.||++|||+.|+|||+|||+..+. ....|..+|+.||.|+++...
T Consensus 160 ~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~T~~~gIyA~GDv~~~~~----------l~~~A~~~g~~aa~~~~g~~~ 229 (233)
T d1xdia1 160 SGSVPNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTGLLP----------LASVAAMQGRIAMYHALGEGV 229 (233)
T ss_dssp GCEEECCSSSCTTTTTCCCBTTTBCCCCSSSBCSSTTEEECSGGGTSCS----------CHHHHHHHHHHHHHHHTTCCC
T ss_pred ccccccccccccchhhhcccCCCcCCcCCCcccCCCCEEEEEEeCCCch----------hHHHHHHHHHHHHHHHcCCCC
Confidence 1456677776 4669999999999999999999987432 334588999999999997443
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.61 E-value=3.9e-15 Score=134.62 Aligned_cols=153 Identities=22% Similarity=0.335 Sum_probs=108.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc-----------------------chhhh-----------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH-----------------------LLQRL----------------- 246 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~-----------------------~l~~~----------------- 246 (489)
...++|||+|+.|+++|..++++|.+|+++++... ...+.
T Consensus 5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 84 (220)
T d1lvla1 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI 84 (220)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence 35799999999999999999999999999986520 00000
Q ss_pred ---------hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCc------
Q 011267 247 ---------FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVS------ 311 (489)
Q Consensus 247 ---------~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~------ 311 (489)
.-..........+++.+++++. +... -.. .. ....++.++.+|.+|+|+|.+|...
T Consensus 85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~-G~~~-~~~---~~----~~~~~~~~i~a~~viiAtG~~p~~lp~~~~~ 155 (220)
T d1lvla1 85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVH-GWAK-VLD---GK----QVEVDGQRIQCEHLLLATGSSSVELPRRPRT 155 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEC-SCEE-EEE---TT----EEEETTEEEECSEEEECCCEEECCBTEEECC
T ss_pred HHHhhhheeEEeeeccchhhhhccCceEEEE-eeec-ccC---cc----cccccceeEeeceeeEcCCCCcccccccccc
Confidence 0001112334556667888776 4321 111 11 1123456899999999999988642
Q ss_pred ---hhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 312 ---PFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 312 ---~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
.+...+++.++++|.||+++||+.|+|||+|||+..+. ....|..+|+.+|.+|++.
T Consensus 156 ~~~~~~~~~~~~~~g~i~vd~~~~T~~~~I~A~GDv~~~~~----------l~~~a~~~g~~~a~~i~G~ 215 (220)
T d1lvla1 156 KGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDVAGEPM----------LAHRAMAQGEMVAEIIAGK 215 (220)
T ss_dssp SSSSGGGSCCCEETTEECCCTTCBCSSTTEEECGGGGCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred cCCcceeeehhhcCCcccccchhhcCCCCEEEEEEeCCccc----------chhhhhhhHHHHHHHHcCC
Confidence 24556777788899999999999999999999997543 3345888999999999864
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.60 E-value=2.5e-19 Score=164.29 Aligned_cols=168 Identities=13% Similarity=0.148 Sum_probs=98.9
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCCh
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTP 127 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (489)
....++|+|||||+||++||..|+++|+ +|+|+|+++........ .. . +++.... ....
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~---~v~l~E~~~~~GG~~~~-~~--~---------~~~~~~~------~~~~ 104 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGY---TVHLTDTAEKIGGHLNQ-VA--A---------LPGLGEW------SYHR 104 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSTTTTHHH-HT--T---------STTCGGG------GHHH
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhcc---ceeeEeeccccCCcccc-cc--c---------cceeecc------cccc
Confidence 4567899999999999999999999987 79999998875432100 00 0 0000000 0111
Q ss_pred hH----HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHh
Q 011267 128 EW----YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISS 203 (489)
Q Consensus 128 ~~----~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~ 203 (489)
++ +.+.... +.. ..++...+.+...+..++.||++|+|||+.+.. +..++.........++.. .....
T Consensus 105 ~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~d~vviAtG~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~ 176 (233)
T d1djqa3 105 DYRETQITKLLKK---NKE-SQLALGQKPMTADDVLQYGADKVIIATGASECT-LWNELKARESEWAENDIK---GIYLI 176 (233)
T ss_dssp HHHHHHHHHHHTT---CTT-CEEECSCCCCCHHHHHTSCCSEEEECCCEECCH-HHHHHHHTTHHHHHTTCC---EEEEC
T ss_pred hhHHHHHHHHhhc---cee-eeeecccccccchhhhhhccceeeeccCCCccc-ccccccccccccchhhhh---hhhhc
Confidence 11 1111111 011 122333333444444567899999999987653 221211111111111100 00001
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
....++++|+|+|++|+|+|..|.+.|.+|+++++++.++.
T Consensus 177 ~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~r~~~~~~ 217 (233)
T d1djqa3 177 GDAEAPRLIADATFTGHRVAREIEEANPQIAIPYKRETIAW 217 (233)
T ss_dssp GGGTSCCCHHHHHHHHHHHHHTTTSSCTTSCCCCCCCCCCT
T ss_pred cccCCceeEecCchHHHHHHHHHHhcCCceEEEEecccccc
Confidence 13468899999999999999999999999999999887653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.60 E-value=9.2e-15 Score=133.49 Aligned_cols=157 Identities=21% Similarity=0.292 Sum_probs=112.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh------------------------------------------h-
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------R- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------~- 245 (489)
.++|||+|+.|+.+|..++++|.+|.++++.+.... .
T Consensus 5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~~~~~GG~c~~~g~~~~k~l~~~~~~~~~~~~~~~~gi~~~~~ 84 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGTNWGLGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWKLEDT 84 (235)
T ss_dssp EEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTTTTBCCCSC
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccccccccccccccchhhhhhhhhhhhHhhhhhccccccccc
Confidence 589999999999999999999999999985421000 0
Q ss_pred -hhC------------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCc--EEEcCEEEEccCCCCCC
Q 011267 246 -LFT------------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGS--TIDADTIVIGIGAKPTV 310 (489)
Q Consensus 246 -~~~------------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~--~i~aD~vi~a~G~~p~~ 310 (489)
..+ ..+...+...+++.+|+++. +... +.. .+. ..+....++ .+.++.+++++|.+|..
T Consensus 85 ~~~d~~~~~~~~~~~i~~l~~g~~~~l~~~~V~vi~-G~~~--~~~--~~~-~~v~~~~~~~~~i~a~~ivi~~G~~p~~ 158 (235)
T d1h6va1 85 VKHDWEKMTESVQNHIGSLNWGYRVALREKKVVYEN-AYGK--FIG--PHK-IMATNNKGKEKVYSAERFLIATGERPRY 158 (235)
T ss_dssp CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEC-CEEE--EEE--TTE-EEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred eeechhhhhheeeeeeeeccchhhhhhhccCceEEE-eEEe--ecc--ccc-eecccccccccccccccceeecCCCcee
Confidence 000 11233355677788999887 5432 221 122 245555554 58899999999999874
Q ss_pred c----------hhhhcCCeec--CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 311 S----------PFERVGLNSS--VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 311 ~----------~~~~~gl~~~--~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
. .++..|++.+ .|.|.||++||||+|+|||+|||+..+.. ....|..+|+.+|++|+++
T Consensus 159 ~~i~~~~~~~~~l~~~gv~l~~~~g~I~vd~~~~TsvpgIyA~GDv~~g~~~---------l~~~A~~eG~~aa~~~~g~ 229 (235)
T d1h6va1 159 LGIRDSCTRTIGLETVGVKINEKTGKIPVTDEEQTNVPYIYAIGDILEGKLE---------LTPVAIQAGRLLAQRLYGG 229 (235)
T ss_dssp CSSEEESCTTSCCTTTTCCCCSSSCCBCCCTTSBCSSTTEEECGGGBTTSCC---------CHHHHHHHHHHHHHHHHHC
T ss_pred EEEeeccceeeccccceeeeccccCccccCCccccCCCCEEEEEeccCCCcc---------cHHHHHHHHHHHHHHHcCC
Confidence 2 2456677765 36799999999999999999999874332 2234889999999999976
Q ss_pred CC
Q 011267 379 QT 380 (489)
Q Consensus 379 ~~ 380 (489)
.+
T Consensus 230 ~~ 231 (235)
T d1h6va1 230 ST 231 (235)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.56 E-value=1.4e-14 Score=117.48 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=85.7
Q ss_pred HHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 197 ADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
++.+++.-..+++++|||||++|+|+|..|+++|.+|+++++. ++++ .+|+++++.+.+.++++||+|++ ++.|+++
T Consensus 10 sd~~~~l~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-~~l~-~~D~~~~~~l~~~l~~~Gv~i~~-~~~v~~~ 86 (122)
T d1h6va2 10 SDDLFSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLR-GFDQDMANKIGEHMEEHGIKFIR-QFVPTKI 86 (122)
T ss_dssp HHHHTTCSSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-SSST-TSCHHHHHHHHHHHHHTTEEEEE-SCEEEEE
T ss_pred chHHhCcccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-hhhc-cCCHHHHHHHHHHHHHCCCEEEE-CCEEEEE
Confidence 4556555557899999999999999999999999999999865 6776 48999999999999999999999 9999999
Q ss_pred EeCCCC--cEEEEEeCCC---c--EEEcCEEEEccC
Q 011267 277 EAGSDG--RVAAVKLEDG---S--TIDADTIVIGIG 305 (489)
Q Consensus 277 ~~~~~~--~v~~v~~~~g---~--~i~aD~vi~a~G 305 (489)
+..+++ ....+.+..+ + .+++|.|++|+|
T Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 87 EQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 754332 2223444332 2 467999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.56 E-value=3.9e-15 Score=126.93 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=114.6
Q ss_pred ecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhh-cCCCcEEEE--CCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 168 VATGCTASRFPEKIGGYLPGVHYIRDVADADALISSL-EKAKKVVVV--GGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 168 lATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~-~~~~~vvVi--G~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
-|||+.|...+++||.+.++.+.+ +.++ ++..- ..++.++|+ |||++|+|+|..|+++|.+||++++.+++++
T Consensus 3 ~atG~~~~~~~pipG~~~~~~~v~-t~~d---~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~ 78 (156)
T d1djqa2 3 NTDGTNCLTHDPIPGADASLPDQL-TPEQ---VMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANY 78 (156)
T ss_dssp CSSCCCTTTSSCCTTCCTTSTTEE-CHHH---HHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTH
T ss_pred cCCCCCCCCCCCCCCccCCCCEEE-CHHH---HhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccc
Confidence 489999875546678766655544 3333 33332 344555555 9999999999999999999999999999888
Q ss_pred hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCCc
Q 011267 245 RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVGG 324 (489)
Q Consensus 245 ~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g~ 324 (489)
. +++.....+.+.|++.||++++ ++.+.++..+ .+.+.+.....++.++.++|..|+....+..+++.+ ..
T Consensus 79 ~-~~~~~~~~~~~~l~~~GV~i~~-~~~v~~i~~~------~v~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~le~D-~v 149 (156)
T d1djqa2 79 M-HFTLEYPNMMRRLHELHVEELG-DHFCSRIEPG------RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFD-SL 149 (156)
T ss_dssp H-HHTTCHHHHHHHHHHTTCEEEE-TEEEEEEETT------EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECS-EE
T ss_pred c-cchhHHHHHHHHHhhccceEEe-ccEEEEecCc------ceEEEeeeccccceeeeeeEEEecccCCccCcEecc-eE
Confidence 6 6777778889999999999999 9999999832 344445545567889999999999988888888876 45
Q ss_pred EEeCC
Q 011267 325 IQVDG 329 (489)
Q Consensus 325 i~vd~ 329 (489)
++++.
T Consensus 150 ilvtg 154 (156)
T d1djqa2 150 VLVTG 154 (156)
T ss_dssp EEESC
T ss_pred EEEec
Confidence 66654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.56 E-value=2.7e-14 Score=126.16 Aligned_cols=138 Identities=20% Similarity=0.309 Sum_probs=104.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc-----------------h---hhhhCHHHHHHHHHHHHhcCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL-----------------L---QRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~-----------------l---~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
..++|+|||||+.|+++|..+++.|.++.++++.... . ....++++...+.+.+++.|++
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~ 83 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT 83 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhcce
Confidence 3578999999999999999999999999999855321 0 1112467777788888889999
Q ss_pred EEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCC-----CCCCchhhhcCCeec-CCcEEeCC-CCCCCCCCe
Q 011267 266 FVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGA-----KPTVSPFERVGLNSS-VGGIQVDG-QFRTRMPGI 338 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~-----~p~~~~~~~~gl~~~-~g~i~vd~-~~~t~~~~I 338 (489)
+.. + .|..+...++. ..+. .+.....+|.+++++|. .|++.+++. +++.+ +|.|.+|+ +++|+.|+|
T Consensus 84 i~~-~-~V~~~~~~~~~--~~v~-~~~~~~~~~~~~~a~g~~~~g~~p~~~~~~~-~veld~~G~i~~~~~~~~Ts~~GV 157 (192)
T d1vdca1 84 IFT-E-TVTKVDFSSKP--FKLF-TDSKAILADAVILAIGAVAKGHEPATKFLDG-GVELDSDGYVVTKPGTTQTSVPGV 157 (192)
T ss_dssp EEC-C-CCCEEECSSSS--EEEE-CSSEEEEEEEEEECCCEEECCEEESCGGGTT-SSCBCTTSCBCCCTTSCBCSSTTE
T ss_pred eee-e-eEEecccccCc--EEec-ccceeeeeeeEEEEeeeeecccCchHHHhcC-ceeecCCCeEEeCCCceEecCCCE
Confidence 877 4 68888744332 2344 44457899999999985 477776654 57765 57788886 889999999
Q ss_pred EEeccccccCC
Q 011267 339 FAIGDVAAFPL 349 (489)
Q Consensus 339 ya~GD~a~~~~ 349 (489)
||+|||+..+.
T Consensus 158 ~a~GDv~~~~~ 168 (192)
T d1vdca1 158 FAAGDVQDKKY 168 (192)
T ss_dssp EECGGGGCSSC
T ss_pred EEeeecCCccc
Confidence 99999987654
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=3.8e-14 Score=124.88 Aligned_cols=154 Identities=21% Similarity=0.281 Sum_probs=109.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------------hhhhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------QRLFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------------~~~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
+.++|+|||||++|+++|..+++.|.+|+++++.+... ....+.++.+.+...+.+.++++..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 81 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF-- 81 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC--
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec--
Confidence 45689999999999999999999999999998764211 1123456777788888889999876
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC-----CchhhhcCCeecCCcEEeCC-----CCCCCCCCeEE
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VSPFERVGLNSSVGGIQVDG-----QFRTRMPGIFA 340 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~-----~~~~~~~gl~~~~g~i~vd~-----~~~t~~~~Iya 340 (489)
..|+.+...++. ..+...+ ..+.++.+++++|..|. ..+++. .++.++|+|.+|+ .++|++|+|||
T Consensus 82 ~~V~~~~~~~~~--~~v~~~~-~~~~~~~viva~G~~~~~~~~~~~~~~~-~~e~~~g~i~~~~~~~~~~~~T~v~gV~a 157 (190)
T d1trba1 82 DHINKVDLQNRP--FRLNGDN-GEYTCDALIIATGASARYHSPNTAIFEG-QLELENGYIKVQSGIHGNATQTSIPGVFA 157 (190)
T ss_dssp CCEEEEECSSSS--EEEEESS-CEEEEEEEEECCCEEECCEEESCGGGTT-TSCEETTEECCCCSSSSCTTBCSSTTEEE
T ss_pred ceeEEEecCCCc--EEEEEee-eeEeeeeeeeecceeeeeecccceeecc-eEecCCcEEEEecCCcccccccccCeEEE
Confidence 468888754332 2344444 47999999999997654 333333 3555668899985 56899999999
Q ss_pred eccccccCCccCCcccccccHHHHHHHHHHHHHH
Q 011267 341 IGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKA 374 (489)
Q Consensus 341 ~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~ 374 (489)
+|||+..... ..-.|..+|..||.+
T Consensus 158 aGDv~~~~~~---------q~i~Aag~G~~AA~~ 182 (190)
T d1trba1 158 AGDVMDHIYR---------QAITSAGTGCMAALD 182 (190)
T ss_dssp CGGGGCSSSC---------CHHHHHHHHHHHHHH
T ss_pred eEEecCccee---------EEEEEeccHHHHHHH
Confidence 9999864432 222344556555543
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.55 E-value=2.9e-14 Score=129.65 Aligned_cols=158 Identities=23% Similarity=0.286 Sum_probs=103.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------------------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------------- 245 (489)
.++|||+|+.|+.+|..+++.|.+|+++++.+.+-..
T Consensus 8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~~~g~~~~~~~~~~a~~~~~~~~~~~~G~~~~~~~~~~~~~~ 87 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDIDMLR 87 (229)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeccccchhhhhhhhhhhHHhhhhHhhcCCcccCCcccHHHHH
Confidence 5899999999999999999999999999987543100
Q ss_pred ----hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC--------CcEEEEEeCCCcEEEcCEEEEccCC-CCCCc-
Q 011267 246 ----LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD--------GRVAAVKLEDGSTIDADTIVIGIGA-KPTVS- 311 (489)
Q Consensus 246 ----~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~--------~~v~~v~~~~g~~i~aD~vi~a~G~-~p~~~- 311 (489)
.....+...+.......+++++. +..... ..... ...........+...++.++++.|. .|++.
T Consensus 88 ~~~~~~~~~l~~~~~~~~~~~~v~vi~-g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (229)
T d1ojta1 88 AYKDGVVSRLTGGLAGMAKSRKVDVIQ-GDGQFL-DPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRAPNGKL 165 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEE-EEEEEE-ETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEECGGG
T ss_pred HHHHHHHHHHhcchHhHhhcCceEEEE-eeeeec-CCcccccccccccccccccccccccceecceEEEEecccCCcccc
Confidence 00112222334455667777765 322111 10000 0000011111234556666666665 45443
Q ss_pred -hhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 312 -PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 312 -~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
.++.+|++.+ +|+|.||+++|||+|+|||+|||+..+. ....|..+|+.||.++++.
T Consensus 166 ~~~e~~g~~~d~~G~I~vd~~~~TsvpgVyAaGDv~~~~~----------l~~~A~~eG~~Aa~~i~G~ 224 (229)
T d1ojta1 166 ISAEKAGVAVTDRGFIEVDKQMRTNVPHIYAIGDIVGQPM----------LAHKAVHEGHVAAENCAGH 224 (229)
T ss_dssp TTGGGTTCCCCTTSCCCCCTTSBCSSTTEEECGGGTCSSC----------CHHHHHHHHHHHHHHHTTC
T ss_pred cchhhhCccCCCCCCEEcCCCccCCCCCEEEEEecCCCcc----------hHHHHHHHHHHHHHHHcCC
Confidence 4788999986 5779999999999999999999997543 3344889999999999864
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.55 E-value=2.4e-14 Score=129.84 Aligned_cols=156 Identities=24% Similarity=0.330 Sum_probs=111.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch---------------h------------------h---------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL---------------Q------------------R--------- 245 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l---------------~------------------~--------- 245 (489)
-.++|||+|+.|+.+|..+++.|.+|.++++..... + .
T Consensus 4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~~gg~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~ 83 (229)
T d3lada1 4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTGEV 83 (229)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCccccccccccccccchhhhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 458999999999999999999999999998642100 0 0
Q ss_pred ------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCc
Q 011267 246 ------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVS 311 (489)
Q Consensus 246 ------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~ 311 (489)
.....+...+...++..||+++. +...... .... .....++ .++.++.+++++|.+|...
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~gV~vi~-G~~~~~~----~~~~-~~~~~~~~~~~~~~~~~i~atG~~~~~~ 157 (229)
T d3lada1 84 AIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFE-GHGKLLA----GKKV-EVTAADGSSQVLDTENVILASGSKPVEI 157 (229)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEE-SEEEECS----TTCE-EEECTTSCEEEECCSCEEECCCEEECCC
T ss_pred eeecchhhhhhhHHHHHhhhhHHHHhhcCCeEEEE-eEEcccc----ccee-eccccCccceeeecccccccCCcccccc
Confidence 00011223455667778999987 6433221 1111 2333332 4688999999999887643
Q ss_pred ---------hhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 312 ---------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 312 ---------~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
+++.+|++++ +|.|.||+++||++|+|||+|||+..+. ....|..+|..+|.+|++..
T Consensus 158 ~~~~~~~~~~~~~~gv~l~~~G~i~vd~~~~T~vpgiyA~GDv~~g~~----------l~~~A~~~G~~aa~~i~g~~ 225 (229)
T d3lada1 158 PRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVYAIGDVVRGAM----------LAHKASEEGVVVAERIAGHK 225 (229)
T ss_dssp TEEECCTTCCSSCCSCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHCC
T ss_pred cccccccccchHhcCeeecCCCcEEecccccCCCCCEEEEeCCcchHH----------HHHHHHHHHHHHHHHHcCCC
Confidence 5677888886 5779999999999999999999987543 33458889999999998643
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=1.2e-16 Score=138.32 Aligned_cols=133 Identities=20% Similarity=0.263 Sum_probs=85.9
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
+..+.++|+|||||||||+||..|+++|+ +|+|+|+++..... ..+.. ..+......++ ....
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~---~Vtl~E~~~~~GG~-l~~~~--~~p~~~~~~~~-----------~~~~ 101 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGH---QVTLFDAHSEIGGQ-FNIAK--QIPGKEEFYET-----------LRYY 101 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSCTT-HHHHT--TSTTCTTHHHH-----------HHHH
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhcc---ceEEEeccCccCce-EEEEE--eCcccchHHHH-----------HHHH
Confidence 34567899999999999999999999998 79999998876432 00000 00000000000 1223
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCceEeecCHHHHHHHHHhhcC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGVHYIRDVADADALISSLEK 206 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~ 206 (489)
...+++.+++++++++|+. + ....||.+|+|||+.|+.++ .++ ...
T Consensus 102 ~~~~~~~gV~i~l~~~Vt~-----------~-~~~~~d~vilAtG~~~~~~~------~pg----------------~~~ 147 (179)
T d1ps9a3 102 RRMIEVTGVTLKLNHTVTA-----------D-QLQAFDETILASGIPNRALA------QPL----------------IDS 147 (179)
T ss_dssp HHHHHHHTCEEEESCCCCS-----------S-SSCCSSEEEECCCEECCTTH------HHH----------------HTT
T ss_pred HHhhhcCCeEEEeCCEEcc-----------c-ccccceeEEEeecCCCcccc------cch----------------hcc
Confidence 4455678999999987641 1 12479999999998765321 111 235
Q ss_pred CCcEEEECCCHHHHHH-HHHHHhCC
Q 011267 207 AKKVVVVGGGYIGMEV-AAAAVGWK 230 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~-A~~l~~~g 230 (489)
+++++|+|+|.+++++ +..+...|
T Consensus 148 g~~v~vigggd~a~~~~~~~Av~~G 172 (179)
T d1ps9a3 148 GKTVHLIGGCDVAMELDARRAIAQG 172 (179)
T ss_dssp TCCEEECGGGTCCSSCCHHHHHHHH
T ss_pred CCEEEEECCcHhhhhccchhhhhcc
Confidence 8899999999888775 33333333
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=7.7e-13 Score=120.10 Aligned_cols=157 Identities=25% Similarity=0.453 Sum_probs=104.9
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh-----h-------CH-------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----F-------TP------------------------- 249 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-----~-------~~------------------------- 249 (489)
.-.|+|||+|+.|+.+|..+++.|.+|.++++.+.+-... + ..
T Consensus 5 ~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~ 84 (233)
T d1v59a1 5 SHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKINV 84 (233)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEECH
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeEeeceecch
Confidence 3468999999999999999999999999999875431100 0 00
Q ss_pred ------------HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--------cEEEcCEEEE-------
Q 011267 250 ------------SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--------STIDADTIVI------- 302 (489)
Q Consensus 250 ------------~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--------~~i~aD~vi~------- 302 (489)
.+........++.+|+++. +.- ++. +.. ...+....+ ..++++.+++
T Consensus 85 ~~~~~~~~~~i~~~~~~~~~l~~~~~v~~~~-G~a--~f~--~~~-~~~v~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~ 158 (233)
T d1v59a1 85 ANFQKAKDDAVKQLTGGIELLFKKNKVTYYK-GNG--SFE--DET-KIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT 158 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEE-SEE--EES--SSS-EEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC
T ss_pred hhhhheeeeEEEEeecceeeeeccCCeEEEE-EEE--EEe--cCC-CcEEEecccccceeeeeeeccCCeEEEecccccc
Confidence 1111223333445666655 321 121 111 112332222 2344555544
Q ss_pred -ccCCCCCCch--hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcC
Q 011267 303 -GIGAKPTVSP--FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSA 378 (489)
Q Consensus 303 -a~G~~p~~~~--~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~ 378 (489)
++|.+|+++. ++.+|++.+ +|+|.||++++|+.|+|||+||++..+. ....|..+|..+|++|+++
T Consensus 159 ~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~~~~T~~~~v~A~GD~~~g~~----------l~~~a~~~G~~aa~~i~~~ 228 (233)
T d1v59a1 159 PFVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDVTFGPM----------LAHKAEEEGIAAVEMLKTG 228 (233)
T ss_dssp CCSCEEECCTTSCTTTTTCCBCTTSCBCCCTTSBCSSTTEEECGGGSSSCC----------CHHHHHHHHHHHHHHHHHS
T ss_pred eecccccCCCCcCchhcCeEEcCCCcEEECCeEecCCCCEEEEcCCcccHH----------HHHHHHHHHHHHHHHHccC
Confidence 8899999873 688899886 5779999999999999999999997643 3345889999999999865
Q ss_pred C
Q 011267 379 Q 379 (489)
Q Consensus 379 ~ 379 (489)
.
T Consensus 229 ~ 229 (233)
T d1v59a1 229 H 229 (233)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.43 E-value=2.2e-12 Score=112.55 Aligned_cols=140 Identities=21% Similarity=0.334 Sum_probs=108.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC--cch-----------hhhhCHHHHHHHHHHHHhcCcEEEEcCceEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN--HLL-----------QRLFTPSLAQRYEQLYQQNGVKFVKVGASIKN 275 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~--~~l-----------~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~ 275 (489)
.|+|||||++|+++|..++++|.+|.+++++. ++. +....+.+...+....++.+++... ...+..
T Consensus 3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 81 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVID-SQSASK 81 (184)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEEC-SCCEEE
T ss_pred cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeec-cceeee
Confidence 58999999999999999999999999998642 111 1112366777777778888999988 888888
Q ss_pred EEeCCCC-cEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 276 LEAGSDG-RVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 276 i~~~~~~-~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
+...... ........+++++.++.++.++|..++.......++... .|.+.+|..++|+.|+||++|||...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~~~~t~~~gv~a~gd~~~~~~ 157 (184)
T d1fl2a1 82 LIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPY 157 (184)
T ss_dssp EECCSSTTCCEEEEETTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCTTCBCSSTTEEECSTTBSCSS
T ss_pred ecccccccceeeeeeecceeeecccccccccccccccccccccccccccceeccCCceeeeCCCEEEEeeecCccc
Confidence 7654332 333455667778999999999998876666666666554 5779999999999999999999998654
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.38 E-value=3.4e-13 Score=117.86 Aligned_cols=109 Identities=26% Similarity=0.437 Sum_probs=88.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
++.+|||||||++|+.+|..|++.|. +..|++++++...+|.++.+++.+........ ....+
T Consensus 2 m~a~VvIIGgG~~G~e~A~~l~~~g~-~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------------~~~~~ 64 (183)
T d1d7ya1 2 LKAPVVVLGAGLASVSFVAELRQAGY-QGLITVVGDEAERPYDRPPLSKDFMAHGDAEK----------------IRLDC 64 (183)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTC-CSCEEEEESSCSCCBCSGGGGTTHHHHCCGGG----------------SBCCG
T ss_pred CCCCEEEECccHHHHHHHHHHHhcCC-ceEEEEEecccccchhhHHHhhhhhhhhhhhh----------------HHHHH
Confidence 34569999999999999999999997 78899999999999998888764332111100 11223
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+...+++++++.++..++.+...+.+.+|++++||.+++|||..|.
T Consensus 65 ~~~~~i~~~~~~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p~ 110 (183)
T d1d7ya1 65 KRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPR 110 (183)
T ss_dssp GGSTTCEEEETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred hhcCCeEEEEeccccccccccceeEecCCcEeeeeeEEEEEEEEcc
Confidence 4567899999999999999999999999999999999999998875
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=9.3e-12 Score=111.64 Aligned_cols=151 Identities=25% Similarity=0.362 Sum_probs=108.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh------------------------hh------------hC----
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------RL------------FT---- 248 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------~~------------~~---- 248 (489)
.++|||+|+.|+++|..++++|.+|.++++.. +.. .. ++
T Consensus 4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~ 82 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL 82 (217)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence 48999999999999999999999999998753 100 00 00
Q ss_pred --------HHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--------
Q 011267 249 --------PSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP-------- 312 (489)
Q Consensus 249 --------~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~-------- 312 (489)
..+...+...+++.||+++. +....... . ....+++.+.++.+++|+|..|..+.
T Consensus 83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~-~~~~~~~~----~----~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~l~ 153 (217)
T d1gesa1 83 IASRTAYIDRIHTSYENVLGKNNVDVIK-GFARFVDA----K----TLEVNGETITADHILIATGGRPSHPREPANDNIN 153 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEE-SCCEEEET----T----EEEETTEEEEEEEEEECCCEEECCCEEESCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCeEEEEe-eeccccee----e----eecCCCceeeeeeeeeecCccccCCCCCCcCCcc
Confidence 01223344557778999887 55433321 1 12346678999999999998876431
Q ss_pred hhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhcCC
Q 011267 313 FERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLSAQ 379 (489)
Q Consensus 313 ~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~~~ 379 (489)
++..++..+ ++.+.+|+.++|+.|+||++||+.... +....+..+|..++.++++..
T Consensus 154 l~~~gv~~~~~~~i~~d~~~~t~~~~i~~iG~g~~g~----------ela~~~~~~G~~v~~~~~~~~ 211 (217)
T d1gesa1 154 LEAAGVKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAV----------ELTPVAVAAGRRLSERLFNNK 211 (217)
T ss_dssp HHHHTCCBCTTSCBCCCTTSBCSSTTEEECSGGGTSC----------CCHHHHHHHHHHHHHHHHTTC
T ss_pred cccccEEEcCCccEeeCchhccCCCcEEEECCCccHH----------HHHHHHHHHHHHHHHHHhCCC
Confidence 445567665 567999999999999999999998643 344557788999999988654
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.32 E-value=1.1e-11 Score=113.06 Aligned_cols=78 Identities=24% Similarity=0.430 Sum_probs=64.1
Q ss_pred cEEEcCEEEEccCCCCCCc----------hhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccH
Q 011267 293 STIDADTIVIGIGAKPTVS----------PFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHV 361 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p~~~----------~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~ 361 (489)
+.+.+|.+++++|.+|... -|+.+|++.+ +|.|.||+++||+.|+|||+|||+..+. ..
T Consensus 148 e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~~~~Ts~~~iyA~GDv~~~~~----------~~ 217 (240)
T d1feca1 148 ETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVM----------LT 217 (240)
T ss_dssp EEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCTTCBCSSTTEEECGGGGCSCC----------CH
T ss_pred EEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCcccCcCCCCEEEEEECCCCcc----------ch
Confidence 4689999999999988743 1678888886 5679999999999999999999987543 23
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 011267 362 DHARQSAQHCIKALLSAQT 380 (489)
Q Consensus 362 ~~A~~~g~~~a~~l~~~~~ 380 (489)
..|..+|+.+|+++++..+
T Consensus 218 ~~A~~eg~~aa~~~~~~~~ 236 (240)
T d1feca1 218 PVAINEGAAFVDTVFANKP 236 (240)
T ss_dssp HHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHhCCCC
Confidence 3488999999999997543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.32 E-value=1.8e-12 Score=114.68 Aligned_cols=110 Identities=16% Similarity=0.291 Sum_probs=84.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|||||||++|+.+|..|++.+. +.+|++++++++..|..+.++. ++.........+ .....+.+++
T Consensus 2 KVvIIGgG~~G~e~A~~l~~~~~-~~~V~v~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-----------~~~~~~~l~~ 68 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLNLHP-DAEIQWYEKGDFISFLSAGMQL-YLEGKVKDVNSV-----------RYMTGEKMES 68 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCT-TSEEEEEESSSSSSBCGGGHHH-HHTTSSCCGGGS-----------BSCCHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCC-CCeEEEEeCCCcccccccCcch-hhcccccchHHH-----------HHhhHHHHHH
Confidence 69999999999999999999975 7799999999888777655543 222211111111 2345678899
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeC---CCe--EEeeCcEEecCCCCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITN---SGK--LLKYGSLIVATGCTAS 175 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~---~g~--~i~yd~lvlATG~~~~ 175 (489)
.|++++++++|.++|.+.+.+++. +|+ +++||.+++|+|+.+.
T Consensus 69 ~gi~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~ 116 (198)
T d1nhpa1 69 RGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPF 116 (198)
T ss_dssp TTCEEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEEC
T ss_pred CCcEEEEeeceeeEeeccccceeeecccccccccccceeeEeecceee
Confidence 999999999999999998887643 343 5789999999998764
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.28 E-value=3.4e-11 Score=109.26 Aligned_cols=78 Identities=24% Similarity=0.428 Sum_probs=61.2
Q ss_pred cEEEcCEEEEccCCCCCC--------ch--hhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHH
Q 011267 293 STIDADTIVIGIGAKPTV--------SP--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVD 362 (489)
Q Consensus 293 ~~i~aD~vi~a~G~~p~~--------~~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~ 362 (489)
+.++++.++++++.+|.. .. ++..++..++|+|.||++|||+.|+|||+|||...+. ...
T Consensus 148 ~~~~a~~v~i~~~~~~~~~~~~~~~~~~l~~~~~gv~~~~G~I~vde~~~T~~~~iyAvGDv~~~~~----------l~~ 217 (238)
T d1aoga1 148 ERLETEHILLASGSWPHMPNGRSPRTKDLQLQNAGVMIKNGGVQVDEYSRTNVSNIYAIGDVTNRVM----------LTP 217 (238)
T ss_dssp EEEEBSCEEECCCEEECCCCCEEECCGGGCGGGTTCCEETTEECCCTTCBCSSTTEEECGGGGTSCC----------CHH
T ss_pred ccccccceeeecccccccccccccceeeecccccEEEEcCCeEEecCCeeeccCCEEEEEEecCCcc----------chh
Confidence 357888888877766543 22 3567888888899999999999999999999987543 334
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 011267 363 HARQSAQHCIKALLSAQT 380 (489)
Q Consensus 363 ~A~~~g~~~a~~l~~~~~ 380 (489)
.|..+|+.+|++|+++.+
T Consensus 218 ~A~~eg~~aa~~i~g~~~ 235 (238)
T d1aoga1 218 VAINEAAALVDTVFGTTP 235 (238)
T ss_dssp HHHHHHHHHHHHHHSSSC
T ss_pred hHHHHHHHHHHHHcCCCC
Confidence 488999999999997543
|
| >d1q1ra3 d.87.1.1 (A:320-422) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.26 E-value=2.4e-11 Score=94.26 Aligned_cols=93 Identities=22% Similarity=0.386 Sum_probs=77.2
Q ss_pred CCCCcCCceeeecccccCCCcceeeeeecCCcC--cEEEEccCC-CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhc
Q 011267 381 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIEIGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARS 457 (489)
Q Consensus 381 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 457 (489)
+.+..+|||||+||+.. +|++|...+ +++.+|+.+ .++..||+++|+++|++. +|.++++..+++|+..
T Consensus 2 p~~~~vP~FWSdQ~d~~-------lQ~~G~~~~~d~~v~rg~~~~~~f~~~y~~~~~lvav~~-vn~~~~~~~~r~li~~ 73 (103)
T d1q1ra3 2 PRDEAAPWFWSDQYEIG-------LKMVGLSEGYDRIIVRGSLAQPDFSVFYLQGDRVLAVDT-VNRPVEFNQSKQIITD 73 (103)
T ss_dssp CCCCCCCEEEEEETTEE-------EEEEECCTTCSEEEEEEETTTTEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHHT
T ss_pred CCCCCCCcEeeecCCCe-------eEEEECCCCCceEEEecCCCCCeEEEEEEeCCeEEEEEE-eCCHHHHHHHHHHHHC
Confidence 35677999999999976 899998654 567788776 679999999999999985 8999999999999999
Q ss_pred CCCCChhhhcCCC-cHHHHHHHHHc
Q 011267 458 QPFVDKAKLQQAS-SVEEALEIARA 481 (489)
Q Consensus 458 ~~~~~~~~~~~~~-~~~e~~~~~~~ 481 (489)
+..++++.|.++. .+.+.++.+.+
T Consensus 74 ~~~~~~~~L~D~~~~Lk~Ll~~~~a 98 (103)
T d1q1ra3 74 RLPVEPNLLGDESVPLKEIIAAAKA 98 (103)
T ss_dssp TCCCCHHHHTCTTSCHHHHHHHHHH
T ss_pred CCCcCHHHhcCCCCCHHHHHHhhhh
Confidence 9999999998765 56666555443
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.26 E-value=4.1e-12 Score=108.98 Aligned_cols=105 Identities=26% Similarity=0.447 Sum_probs=80.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHHH
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYKE 132 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (489)
+|||||||++|+.+|..|++ +. +|+|+++++.+.|.++.++.. +..... ...+ .....+++.+
T Consensus 2 rVvIIGgG~~G~e~A~~l~~-~~---~Vtvv~~~~~~~~~~~~~~~~-~~~~~~-~~~~-----------~~~~~~~~~~ 64 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ-TY---EVTVIDKEPVPYYSKPMLSHY-IAGFIP-RNRL-----------FPYSLDWYRK 64 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT-TS---EEEEECSSSSCCCCSTTHHHH-HTTSSC-GGGG-----------CSSCHHHHHH
T ss_pred eEEEECCcHHHHHHHHHHHc-CC---CEEEEeccccccccccchhhh-hhhhhh-hhhh-----------hHHHHHHHHh
Confidence 69999999999999999976 33 799999999888887766552 221111 1111 2445778889
Q ss_pred CCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 133 KGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 133 ~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
.++++++++.|+.++...+.+.. ++.++.||.+++|+|..|.
T Consensus 65 ~~v~~~~~~~v~~i~~~~~~~~~-~~~~i~~D~li~a~G~~~~ 106 (167)
T d1xhca1 65 RGIEIRLAEEAKLIDRGRKVVIT-EKGEVPYDTLVLATGAPNV 106 (167)
T ss_dssp HTEEEECSCCEEEEETTTTEEEE-SSCEEECSEEEECCCEECC
T ss_pred ccceeeeeccccccccccccccc-cccccccceeEEEEEecCC
Confidence 99999999999999987766655 5567999999999998664
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=99.25 E-value=4.3e-12 Score=110.27 Aligned_cols=108 Identities=20% Similarity=0.242 Sum_probs=78.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|||||||++|+.+|..|++.+. +.+|||||+++.+ ..+.++..+..... .... ......++
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~-~~~Vtlie~~~~~--~~~~~~~~~~~~~~-~~~~------------~~~~~~~~ 65 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADP-SIEVTLIEPNTDY--YTCYLSNEVIGGDR-KLES------------IKHGYDGL 65 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCT-TSEEEEECSCSCE--ECSTTHHHHHHTSS-CGGG------------GEECSHHH
T ss_pred CCcEEEECccHHHHHHHHHHHHcCC-CCcEEEEECCCcc--ccccccccccchhh-hhhh------------hhhhhhhc
Confidence 3689999999999999999999986 7899999998753 22333221111101 0100 12233456
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
...++.+..+ .+..++...+.+.+.++++++||+||+|||..+.
T Consensus 66 ~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~i~~D~li~atG~~~~ 109 (186)
T d1fcda1 66 RAHGIQVVHD-SATGIDPDKKLVKTAGGAEFGYDRCVVAPGIELI 109 (186)
T ss_dssp HTTTEEEECC-CEEECCTTTTEEEETTSCEEECSEEEECCCEEEC
T ss_pred cccceeEeee-eeEeeeeccceeecccceeeccceEEEEeccccc
Confidence 6778888874 7788888889999999999999999999998875
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.20 E-value=7.4e-11 Score=108.29 Aligned_cols=141 Identities=14% Similarity=0.283 Sum_probs=102.5
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------- 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------------------------------- 245 (489)
...|+|||+|+.|+.+|..|++.|.+|.++++.+.+..+
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDF 83 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccch
Confidence 457999999999999999999999999999987432100
Q ss_pred ----------------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC-cEEEEEeCCCcEEEcCEEEE
Q 011267 246 ----------------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG-RVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 246 ----------------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~~g~~i~aD~vi~ 302 (489)
.....+.+.+.+.+++.||++++ +++|++++..+++ .+..+...+++++.||.||+
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~-~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIi 162 (253)
T d2gqfa1 84 ISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILL-RSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV 162 (253)
T ss_dssp HHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEEC-SCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred hhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeec-CceEEEEEeecCCceeEEEEecCCEEEEeCEEEE
Confidence 00123456677778889999999 9999999876554 33334556778999999999
Q ss_pred ccCCCCC--C-------chhhhcCCee------cCCcEEeCC----CCCC-CCCCeEEeccccccC
Q 011267 303 GIGAKPT--V-------SPFERVGLNS------SVGGIQVDG----QFRT-RMPGIFAIGDVAAFP 348 (489)
Q Consensus 303 a~G~~p~--~-------~~~~~~gl~~------~~g~i~vd~----~~~t-~~~~Iya~GD~a~~~ 348 (489)
|+|..+. + .+++++++.. ..|++.+.+ +|++ .+|++|.+|.+....
T Consensus 163 AtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~ 228 (253)
T d2gqfa1 163 ATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVT 228 (253)
T ss_dssp CCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCE
T ss_pred cCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEee
Confidence 9997632 2 2566777654 224554332 4665 689999999777543
|
| >d1d7ya3 d.87.1.1 (A:309-405) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.19 E-value=9.5e-11 Score=89.85 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=70.7
Q ss_pred CCCCcCCceeeecccccCCCcceeeeeecCCcC--cEEE-EccCC-CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHh
Q 011267 381 HTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVG--ETIE-IGNFD-PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLAR 456 (489)
Q Consensus 381 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~G~~~~--~~~~-~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 456 (489)
.+|..+|||||+||+.. +|++|.... +.+. .++.+ .+|..+|.++|+++|++. +|.++++..+++|+.
T Consensus 3 ~~y~~vP~FWSdQ~d~~-------iq~~G~~~~~~~~v~~~~~~~~~~f~~~y~~~g~lvgv~~-vn~~~~~~~~rrli~ 74 (97)
T d1d7ya3 3 PGYAELPWYWSDQGALR-------IQVAGLASGDEEIVRGEVSLDAPKFTLIELQKGRIVGATC-VNNARDFAPLRRLLA 74 (97)
T ss_dssp CCCCCCCEEEEEETTEE-------EEEEECSCCSEEEEEEECCSSSCEEEEEEEETTEEEEEEE-ESCHHHHHHHHHHHH
T ss_pred CCCCCCCcEEeccCCCe-------eEEEecCCCCCEEEEeccCCCCCeEEEEEEeCCEEEEEEE-eCCHHHHHHHHHHHH
Confidence 47999999999999976 899998655 3344 34444 679999999999999985 899999999999999
Q ss_pred cCCCCChhhhcCCCcH
Q 011267 457 SQPFVDKAKLQQASSV 472 (489)
Q Consensus 457 ~~~~~~~~~~~~~~~~ 472 (489)
.+..++++.|.++..-
T Consensus 75 ~~~~~~~~~LaD~~~~ 90 (97)
T d1d7ya3 75 VGAKPDRAALADPATD 90 (97)
T ss_dssp TTCCCCHHHHHSSCCH
T ss_pred CCCCCCHHHhcCCCCC
Confidence 9999999999887554
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=99.17 E-value=2.8e-11 Score=112.45 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSVG 323 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~g 323 (489)
+..+...+.+.+++.|++++. +++|++|..+ +.+..|.+++| ++.||.||+|+|.... .+++.+|+...++
T Consensus 150 ~~~~~~~l~~~~~~~Gv~i~~-~~~V~~i~~~--~~~~~V~t~~g-~i~a~~vV~AaG~~s~-~l~~~~G~~~~~~ 220 (276)
T d1ryia1 150 PYFVCKAYVKAAKMLGAEIFE-HTPVLHVERD--GEALFIKTPSG-DVWANHVVVASGVWSG-MFFKQLGLNNADG 220 (276)
T ss_dssp HHHHHHHHHHHHHHTTCEEET-TCCCCEEECS--SSSEEEEETTE-EEEEEEEEECCGGGTH-HHHHHTTCCCCSS
T ss_pred cccchhHHHHHHHHcCCEEec-ceEEEeEEee--cceEEEecCCe-EEEcCEEEECCCccHH-HHHhhcCCCcccc
Confidence 346677788889999999999 9999999854 44557888887 6999999999998775 7889999876543
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=7e-11 Score=100.65 Aligned_cols=122 Identities=20% Similarity=0.224 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCc---------------------
Q 011267 174 ASRFPEKIGGYLPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLD--------------------- 232 (489)
Q Consensus 174 ~~~~p~~~g~~~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~--------------------- 232 (489)
|+ .|++||.+.+++++. .+.+......+++++|||||++|+|+|..+.+.|.+
T Consensus 2 Pr-~p~IpG~d~~~V~~a-----~d~L~~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~ 75 (162)
T d1ps9a2 2 PR-TPPIDGIDHPKVLSY-----LDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQA 75 (162)
T ss_dssp EC-CCCCBTTTSTTEEEH-----HHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSG
T ss_pred CC-CCCCCCCCCCCeEEH-----HHHhhCccccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhh
Confidence 44 456789999998764 223434456789999999999999999999998854
Q ss_pred ----------------EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC-cEE
Q 011267 233 ----------------TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG-STI 295 (489)
Q Consensus 233 ----------------V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g-~~i 295 (489)
++.+......+...++..........++..||+++. ++.+.+++ +++.. +...+. +++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~-~~~v~~i~--~~gv~--~~~~g~e~~i 150 (162)
T d1ps9a2 76 GGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIP-GVSYQKID--DDGLH--VVINGETQVL 150 (162)
T ss_dssp GGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEEC-SCEEEEEE--TTEEE--EEETTEEEEE
T ss_pred cccccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEe-eeEEEEEc--CCCCE--EecCCeEEEE
Confidence 344443333333334555566777889999999999 99999997 34432 233332 358
Q ss_pred EcCEEEEccCC
Q 011267 296 DADTIVIGIGA 306 (489)
Q Consensus 296 ~aD~vi~a~G~ 306 (489)
+||.||+|+|.
T Consensus 151 ~aD~Vv~A~Gq 161 (162)
T d1ps9a2 151 AVDNVVICAGQ 161 (162)
T ss_dssp CCSEEEECCCE
T ss_pred ECCEEEECCCC
Confidence 99999999994
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.16 E-value=1.8e-11 Score=112.14 Aligned_cols=122 Identities=20% Similarity=0.304 Sum_probs=75.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCccc-----cC--CCCCCCCC------
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTKG-----YL--FPLDKKPA------ 109 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-------~~~~l~~~-----~~--~~~~~~~~------ 109 (489)
+++||+|||||+||++||..|+++|+ +|+|||+.+.... .++..... +. ........
T Consensus 1 M~yDViIIGaG~aGl~aA~~la~~G~---~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T d2i0za1 1 MHYDVIVIGGGPSGLMAAIGAAEEGA---NVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI 77 (251)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhh
Confidence 46999999999999999999999987 7999999875421 00000000 00 00000000
Q ss_pred ----------CCCCCccc---cC-----CC----CCCCChhHHHHCCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeC
Q 011267 110 ----------RLPGFHTC---VG-----SG----GERQTPEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYG 164 (489)
Q Consensus 110 ----------~~~~~~~~---~~-----~~----~~~~~~~~~~~~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd 164 (489)
.-.+.... .+ .. ....+.+.+++.|++++.+++|+.|+.++. .+.+++|+++.+|
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~ 157 (251)
T d2i0za1 78 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN 157 (251)
T ss_dssp SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred hhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence 00000000 00 00 000112334567999999999999986554 4678899999999
Q ss_pred cEEecCCCCC
Q 011267 165 SLIVATGCTA 174 (489)
Q Consensus 165 ~lvlATG~~~ 174 (489)
+||+|||+..
T Consensus 158 ~vI~AtGg~S 167 (251)
T d2i0za1 158 HVVIAVGGKS 167 (251)
T ss_dssp CEEECCCCSS
T ss_pred eEEEccCCcc
Confidence 9999999865
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.15 E-value=3.9e-10 Score=103.05 Aligned_cols=160 Identities=21% Similarity=0.317 Sum_probs=110.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-------------------------------------------
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------------------------------------------- 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------------------------------------------- 245 (489)
.|+|||+|+.|+.+|..|++.|.+|+++++.+.+..+
T Consensus 4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (251)
T d2i0za1 4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI 83 (251)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence 5899999999999999999999999999986432100
Q ss_pred ------------------h-----hCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEE
Q 011267 246 ------------------L-----FTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVI 302 (489)
Q Consensus 246 ------------------~-----~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~ 302 (489)
. ....+.+.+.+.+++.||++++ +++|+++..+ ++.+..|.+++|+++.||.||+
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~-~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~ 161 (251)
T d2i0za1 84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRT-NTPVETIEYE-NGQTKAVILQTGEVLETNHVVI 161 (251)
T ss_dssp HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEETTCCEEECSCEEE
T ss_pred HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccC-CcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEE
Confidence 0 0023445677778889999999 9999999854 5677789999999999999999
Q ss_pred ccCCCC--CC-------chhhhcCCeecC---CcEEeC----CCC-CCCCCCeEEeccccccCCccCCcccccccHHHHH
Q 011267 303 GIGAKP--TV-------SPFERVGLNSSV---GGIQVD----GQF-RTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHAR 365 (489)
Q Consensus 303 a~G~~p--~~-------~~~~~~gl~~~~---g~i~vd----~~~-~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~ 365 (489)
|+|... .+ .++++.+++... ..+.++ ..+ .+..|++|.+|++........| . ....|.
T Consensus 162 AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG-~----~~~~a~ 236 (251)
T d2i0za1 162 AVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGG-Y----NITSAL 236 (251)
T ss_dssp CCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTT-H----HHHHHH
T ss_pred ccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcch-H----HHHHHH
Confidence 999753 22 356777765431 112221 122 2467999999999864432222 1 223355
Q ss_pred HHHHHHHHHH
Q 011267 366 QSAQHCIKAL 375 (489)
Q Consensus 366 ~~g~~~a~~l 375 (489)
..|+.++..+
T Consensus 237 ~~G~~a~~~~ 246 (251)
T d2i0za1 237 VTGRIAGTTA 246 (251)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5566555544
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=7.5e-11 Score=94.22 Aligned_cols=94 Identities=15% Similarity=0.128 Sum_probs=73.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
.+++++|||||+.|+.+|..|++.|. +|+|+++.+... |.+.+ .+ .....+.
T Consensus 20 ~p~~vvIiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~~l---~~~d~-----------~~-----------~~~~~~~ 71 (116)
T d1gesa2 20 LPERVAVVGAGYIGVELGGVINGLGA---KTHLFEMFDAPL---PSFDP-----------MI-----------SETLVEV 71 (116)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred CCCEEEEECCChhhHHHHHHhhcccc---EEEEEeecchhh---hhcch-----------hh-----------HHHHHHH
Confidence 35689999999999999999999986 799999886531 11100 00 1234567
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG 171 (489)
+++.|+++++++.|..+.... .++.+++|+++.+|.+++|||
T Consensus 72 l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 72 MNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp HHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred HHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 788999999999999987653 368889999999999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.14 E-value=1.1e-10 Score=93.76 Aligned_cols=94 Identities=19% Similarity=0.300 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...++++|||||+.|+.+|..|++.|. +|+||++.+..... .+ + ..+ .....+
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~~g~---~Vtli~~~~~~l~~-------~~-~-----~~~-----------~~~~~~ 80 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATARTAGV---HVSLVETQPRLMSR-------AA-P-----ATL-----------ADFVAR 80 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSTTTT-------TS-C-----HHH-----------HHHHHH
T ss_pred hcCCeEEEECcchhHHHHHHHhhcccc---eEEEEeeccccccc-------cC-C-----HHH-----------HHHHHH
Confidence 345799999999999999999999976 79999998763110 00 0 000 122356
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG 171 (489)
++++.|++++++++|+++.. ..+.++||+++++|.+|+|+|
T Consensus 81 ~l~~~GV~i~~~~~v~~~~~--~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 81 YHAAQGVDLRFERSVTGSVD--GVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp HHHTTTCEEEESCCEEEEET--TEEEETTSCEEECSEEEECSC
T ss_pred HHHHCCcEEEeCCEEEEEeC--CEEEECCCCEEECCEEEEeeC
Confidence 78889999999999998765 468899999999999999998
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=99.10 E-value=2.2e-11 Score=116.54 Aligned_cols=111 Identities=11% Similarity=0.182 Sum_probs=64.5
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe--CCCcEEEcCEEEEccCCC--------CCCchhh-hc--CCeecC
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL--EDGSTIDADTIVIGIGAK--------PTVSPFE-RV--GLNSSV 322 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~--~~g~~i~aD~vi~a~G~~--------p~~~~~~-~~--gl~~~~ 322 (489)
..++++.|+++++ ++.|++|..++++....+.. .++++++||.||+|++.. |...... ++ .+....
T Consensus 242 ~~l~~~~g~~i~~-~~~V~~I~~~~~~v~v~~~~~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~ 320 (370)
T d2iida1 242 TAMYRDIQDKVHF-NAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY 320 (370)
T ss_dssp HHHHHHTGGGEES-SCEEEEEEECSSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred HHHHHhcCCcccc-CceEEEEEEeCCeEEEEEEecCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcc
Confidence 3445678999999 99999998765443222333 234689999999998632 2111000 00 000000
Q ss_pred CcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 323 GGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 323 g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.....+..+.+...+||.+||++..+.. .+..|+..|..||.+|.
T Consensus 321 ~~~~~~~~~~~~~g~v~~aGd~~~~~~~---------~~~~a~~sG~~aA~~i~ 365 (370)
T d2iida1 321 QFQHFSDPLTASQGRIYFAGEYTAQAHG---------WIDSTIKSGLRAARDVN 365 (370)
T ss_dssp HHHHHHHHHHCCBTTEEECSGGGSSSSS---------CHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhcccCCEEEecccccCCCc---------ccHHHHHHHHHHHHHHH
Confidence 0011112233345679999998865431 34568888999888874
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.10 E-value=2e-14 Score=133.35 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=30.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
||++|||||+||+.||.++++.|. +|+|||++.
T Consensus 2 yDviVIG~G~aG~~aA~~aa~~G~---~V~liE~~~ 34 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAARHNA---KVALVEKSR 34 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSS
T ss_pred ceEEEECCCHHHHHHHHHHHHCCC---eEEEEecCC
Confidence 799999999999999999999987 799999865
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.08 E-value=1.1e-10 Score=95.63 Aligned_cols=96 Identities=18% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...++++|||||+.|+.+|..|++.|. +|+|+++.+.. +.+ .+ .+ .+ .....+
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~~g~---~Vtvie~~~~~-l~~------~~---~~---~~-----------~~~~~~ 85 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIKANM---HVTLLDTAARV-LER------VT---AP---PV-----------SAFYEH 85 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSST-TTT------TS---CH---HH-----------HHHHHH
T ss_pred ccCCEEEEECCchHHHHHHHHHHhhCc---ceeeeeecccc-ccc------cc---ch---hh-----------hhhhhh
Confidence 346799999999999999999999976 79999998753 110 00 00 00 012346
Q ss_pred HHHHCCcEEEeCCcEEEEeCCC-----CEEEeCCCeEEeeCcEEecCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~-----~~v~~~~g~~i~yd~lvlATG 171 (489)
.+++.|++++++++|..++... ..+.+++|+++++|.+|+|+|
T Consensus 86 ~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 86 LHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp HHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred cccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 6788999999999999997543 247799999999999999998
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=99.08 E-value=6.3e-10 Score=103.47 Aligned_cols=70 Identities=16% Similarity=0.399 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCeecC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNSSV 322 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~~~ 322 (489)
+..+...+.+.+++.|++++. ++.|+++...+ +.+ .|.+++| ++.||.||+|+|...+ .++..+|+....
T Consensus 149 p~~~~~~l~~~a~~~Gv~i~~-~~~V~~i~~~~-~~v-~V~t~~g-~i~a~~VViAaG~~s~-~l~~~lg~~~~~ 218 (281)
T d2gf3a1 149 SENCIRAYRELAEARGAKVLT-HTRVEDFDISP-DSV-KIETANG-SYTADKLIVSMGAWNS-KLLSKLNLDIPD 218 (281)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-SCCEEEEEECS-SCE-EEEETTE-EEEEEEEEECCGGGHH-HHGGGGTEECCT
T ss_pred ccccccccccccccccccccC-CcEEEEEEEEC-CEE-EEEECCc-EEEcCEEEECCCCcch-hhHHhcCCcccc
Confidence 456777888899999999999 99999998654 444 5888887 6999999999998765 788888887653
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.07 E-value=9.1e-11 Score=107.71 Aligned_cols=122 Identities=17% Similarity=0.208 Sum_probs=73.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC-------CCCCCcc------ccCCCCCCCCCC-C----
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY-------ERPALTK------GYLFPLDKKPAR-L---- 111 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y-------~~~~l~~------~~~~~~~~~~~~-~---- 111 (489)
+.+||+|||||+||++||.+|+++|. +|+|||+.+...- .+..+.. .+.......... +
T Consensus 3 ~~~DViIIGaG~aGl~aA~~la~~G~---~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~ 79 (253)
T d2gqfa1 3 QYSENIIIGAGAAGLFCAAQLAKLGK---SVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT 79 (253)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhc
Confidence 46899999999999999999999987 6999999875420 1111110 000000000000 0
Q ss_pred ----------CCCccccCC-------CC----CCCChhHHHHCCcEEEeCCcEEEEeCCCC-----EEEeCCCeEEeeCc
Q 011267 112 ----------PGFHTCVGS-------GG----ERQTPEWYKEKGIEMIYQDPVTSIDIEKQ-----TLITNSGKLLKYGS 165 (489)
Q Consensus 112 ----------~~~~~~~~~-------~~----~~~~~~~~~~~~i~~~~~~~V~~id~~~~-----~v~~~~g~~i~yd~ 165 (489)
.+....... .. ...+...+++.+++++++++|+++..... .+...++.++.+|+
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~ 159 (253)
T d2gqfa1 80 NWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKN 159 (253)
T ss_dssp HHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESE
T ss_pred ccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCE
Confidence 000000000 00 00112334567999999999999875432 34556788899999
Q ss_pred EEecCCCCC
Q 011267 166 LIVATGCTA 174 (489)
Q Consensus 166 lvlATG~~~ 174 (489)
||+|||+.+
T Consensus 160 VIiAtGG~S 168 (253)
T d2gqfa1 160 LIVATGGLS 168 (253)
T ss_dssp EEECCCCSS
T ss_pred EEEcCCccc
Confidence 999999875
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=5.6e-13 Score=119.83 Aligned_cols=175 Identities=15% Similarity=0.148 Sum_probs=95.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC---CCCCCCccccCCCC-----CCCCCCCCCCccccCC-
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP---YERPALTKGYLFPL-----DKKPARLPGFHTCVGS- 120 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~---y~~~~l~~~~~~~~-----~~~~~~~~~~~~~~~~- 120 (489)
++||||||||||||++||.++++.|. +|+|||++..-. +..+.-++.+.... ........++......
T Consensus 1 k~yDvvVIG~G~aG~~aA~~a~~~G~---kV~iiE~~~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 77 (217)
T d1gesa1 1 KHYDYIAIGGGSGGIASINRAAMYGQ---KCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKF 77 (217)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTTTC---CEEEEESSCTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEE
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccc
Confidence 36899999999999999999999987 699999864210 00000000000000 0000000000000000
Q ss_pred --------------CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCC
Q 011267 121 --------------GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLP 186 (489)
Q Consensus 121 --------------~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~ 186 (489)
........++.+.++++..+.... .+. ..+ ..++..+.++++++|||+.|. .|..|+.+.-
T Consensus 78 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~-~~~--~~~-~~~~~~~~~~~~iiatG~~p~-ip~ip~~~~l 152 (217)
T d1gesa1 78 NWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARF-VDA--KTL-EVNGETITADHILIATGGRPS-HPREPANDNI 152 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEE-EET--TEE-EETTEEEEEEEEEECCCEEEC-CCEEESCTTS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccc-cee--eee-cCCCceeeeeeeeeecCcccc-CCCCCCcCCc
Confidence 000011234566788888764432 222 222 346778999999999999986 4554442211
Q ss_pred -----ceEeecC-HHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEE
Q 011267 187 -----GVHYIRD-VADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTT 234 (489)
Q Consensus 187 -----gv~~~~~-~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~ 234 (489)
++.+... ....+... -...+++.+||+|.+|+|+|..+.+.|.+|+
T Consensus 153 ~l~~~gv~~~~~~~i~~d~~~--~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~ 204 (217)
T d1gesa1 153 NLEAAGVKTNEKGYIVVDKYQ--NTNIEGIYAVGDNTGAVELTPVAVAAGRRLS 204 (217)
T ss_dssp CHHHHTCCBCTTSCBCCCTTS--BCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred ccccccEEEcCCccEeeCchh--ccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence 1111100 00001100 0234689999999999999999999887764
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.04 E-value=9.5e-10 Score=95.34 Aligned_cols=113 Identities=30% Similarity=0.455 Sum_probs=88.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...||||||||++|+.+|..|++.|. +..|+++++++..++.+.++...+...... .... .......
T Consensus 2 ~~~~VvIIGgG~~G~e~A~~l~~~g~-~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~ 68 (185)
T d1q1ra1 2 ANDNVVIVGTGLAGVEVAFGLRASGW-EGNIRLVGDATVIPHHLPPLSKAYLAGKAT-AESL-----------YLRTPDA 68 (185)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCCSCCBCSGGGGTTTTTTCSC-SGGG-----------BSSCHHH
T ss_pred CCCCEEEECCcHHHHHHHHHHHHcCC-ceEEEEecCccccchhhhHHHHHHHHhhhh-hhhh-----------hhhhhhh
Confidence 35789999999999999999999987 677888888888877766665433222111 1111 2344566
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
+...+..+..+..+..++.+...+...++.++.+|.+++++|..|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~~d~~i~~~G~~~~ 114 (185)
T d1q1ra1 69 YAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPL 114 (185)
T ss_dssp HHHTTEEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEEE
T ss_pred hcccceeeeccceeeeecccccEEEeeceeEEEeeeeeeeeecccC
Confidence 7778888998889999999999999999999999999999998764
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.7e-09 Score=87.27 Aligned_cols=110 Identities=18% Similarity=0.270 Sum_probs=89.1
Q ss_pred CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCc
Q 011267 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGV 264 (489)
Q Consensus 185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv 264 (489)
..|++|+. .+ ...+..+++|+|||+|.+++|.|..|.+...+|++++|++.+- .++...+.+.+..+..+|
T Consensus 11 gkgV~yca---~c---D~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~---~~~~~~~~~~~~~~~~~i 81 (126)
T d1trba2 11 GRGVSACA---TS---DGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR---AEKILIKRLMDKVENGNI 81 (126)
T ss_dssp TTTEESCH---HH---HGGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC---CCHHHHHHHHHHHHTSSE
T ss_pred CCCEEEEE---ec---chHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc---chhHHHHHHHHhhcccce
Confidence 35677652 12 2345689999999999999999999999999999999998753 367778888888888899
Q ss_pred EEEEcCceEEEEEeCCCCcEEEEEeCCC------cEEEcCEEEEccC
Q 011267 265 KFVKVGASIKNLEAGSDGRVAAVKLEDG------STIDADTIVIGIG 305 (489)
Q Consensus 265 ~~~~~~~~v~~i~~~~~~~v~~v~~~~g------~~i~aD~vi~a~G 305 (489)
.++. ++.++++..+ +..+.+|++.+. +++++|-+++++|
T Consensus 82 ~~~~-~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 82 ILHT-NRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp EEEC-SCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred eEec-ceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 9999 9999999853 455888888653 3699999999987
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.03 E-value=8.4e-10 Score=101.46 Aligned_cols=137 Identities=23% Similarity=0.394 Sum_probs=87.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----------------------------------------h--
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------------------------------------L-- 246 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------------------------------------~-- 246 (489)
.++|||+|+.|+.+|..++++|.+|.++++.. +-.. .
T Consensus 3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~-~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 81 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSR-LGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVE 81 (259)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEEESSS-TTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHH
T ss_pred eEEEECCCHHHHHHHHHHHHCCCeEEEEecCC-CCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHh
Confidence 47999999999999999999999999999752 1000 0
Q ss_pred ----hCHHHHHHHHHHHHhcCcEEEEcCc-eEEE-----EEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC-----Cc
Q 011267 247 ----FTPSLAQRYEQLYQQNGVKFVKVGA-SIKN-----LEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT-----VS 311 (489)
Q Consensus 247 ----~~~~~~~~l~~~l~~~Gv~~~~~~~-~v~~-----i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~-----~~ 311 (489)
.-..+...+...+++.||+++. +. ++.+ +...++.........+++++.+|.||+|||.+|. .+
T Consensus 82 ~~~~~i~~~~~~~~~~l~~~gV~vi~-G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~~~ 160 (259)
T d1onfa1 82 RRDKYIQRLNNIYRQNLSKDKVDLYE-GTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPDTE 160 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEE-SCCCCC--------------------------CBSSEEECCCCCBCCBCCTTT
T ss_pred hhheeeeccccchhhhcccccceEEe-eecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccccc
Confidence 0012233456677889999988 53 1111 1100011000111123457999999999999983 33
Q ss_pred h--hhhcCCeecCCcEEeCCCCCCCCCCeEEecccccc
Q 011267 312 P--FERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAF 347 (489)
Q Consensus 312 ~--~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~ 347 (489)
. ++..++..+++.+.+|+..+|.+.++|++||++..
T Consensus 161 ~~~l~~~~i~ts~~~~~~d~~~~t~Vig~gaiGdv~~~ 198 (259)
T d1onfa1 161 NLKLEKLNVETNNNYIVVDENQRTSVNNIYAVGDCCMV 198 (259)
T ss_dssp TSSCTTTTCCBSSSCEEECTTCBCSSSSEEECSTTEEE
T ss_pred ccccccceeeecccccccccCCceeEeeEEEEEEeeeh
Confidence 2 45566666677899999999999999999999864
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=99.01 E-value=5.9e-11 Score=111.63 Aligned_cols=111 Identities=18% Similarity=0.231 Sum_probs=65.5
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC--cEEEcCEEEEccCCCCCCchhhhcCCee--------cC
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG--STIDADTIVIGIGAKPTVSPFERVGLNS--------SV 322 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g--~~i~aD~vi~a~G~~p~~~~~~~~gl~~--------~~ 322 (489)
..+.+..++.|+++++ ++.|++|..++++ +..+...+| ++++||.||+|++......+++...-.. ..
T Consensus 223 ~~~~~l~~~~g~~i~~-~~~V~~I~~~~~~-~~v~~~~~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~~~~ 300 (347)
T d2ivda1 223 VLIDALAASLGDAAHV-GARVEGLAREDGG-WRLIIEEHGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGIYNL 300 (347)
T ss_dssp HHHHHHHHHHGGGEES-SEEEEEEECC--C-CEEEEEETTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTCCBT
T ss_pred HHHHHHHHHhhccccc-CCEEEEEEEeCCe-EEEEEEcCCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcceec
Confidence 3444555666899999 9999999865444 322333344 4699999999998532222322221100 01
Q ss_pred Cc---EEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 323 GG---IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 323 g~---i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
+. +...+...++.|++|++||..... ....+...|..+|+.|.
T Consensus 301 ~~~~~~~~~~~~~~~~p~~~~~G~~~~g~-----------~~~~~~~~g~~~a~~~~ 346 (347)
T d2ivda1 301 GHLERVAAIDAALQRLPGLHLIGNAYKGV-----------GLNDCIRNAAQLADALV 346 (347)
T ss_dssp THHHHHHHHHHHHHTSTTEEECSTTTSCC-----------SHHHHHHHHHHHHHHHC
T ss_pred CcccceecccccccCCCCEEEecccccCC-----------CHHHHHHHHHHHHHHhh
Confidence 11 111122235789999999986532 23457778888887765
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.00 E-value=2.5e-10 Score=91.05 Aligned_cols=94 Identities=21% Similarity=0.277 Sum_probs=70.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|++.|. +|||+++.+... |.. ++ .+ .....+.
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~~~g~---~Vtlve~~~~il---~~~--------d~---~~-----------~~~l~~~ 71 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYRKLGA---QVSVVEARERIL---PTY--------DS---EL-----------TAPVAES 71 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS--------CH---HH-----------HHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHhhccc---ceEEEeeecccc---ccc--------cc---hh-----------HHHHHHH
Confidence 45789999999999999999999986 799999886531 100 00 00 1234567
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCC--eEEeeCcEEecCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSG--KLLKYGSLIVATG 171 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g--~~i~yd~lvlATG 171 (489)
+++.|++++++++|.+++.....+...++ .++++|.+++|||
T Consensus 72 l~~~gV~i~~~~~V~~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 72 LKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp HHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred HHhhcceEEcCcEEEEEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 88899999999999999865544444333 4799999999998
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.00 E-value=5e-10 Score=89.57 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=73.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|.+......+|+++++.+... |.+ ++ .+ .....+.
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il---~~~--------d~---~~-----------~~~~~~~ 71 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL---RGF--------DS---EL-----------RKQLTEQ 71 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS---TTS--------CH---HH-----------HHHHHHH
T ss_pred cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc---ccc--------cc---hh-----------hHHHHHH
Confidence 35789999999999999988877643245899999875421 000 00 00 1234567
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEEeeCcEEecCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i~yd~lvlATG 171 (489)
+++.|+++++++.+.++.... ..+.+++|.++++|.+++|||
T Consensus 72 l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 72 LRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp HHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred HhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 888999999999999997543 368899999999999999998
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=99.00 E-value=2.1e-09 Score=102.01 Aligned_cols=166 Identities=17% Similarity=0.187 Sum_probs=106.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh------------------------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------ 244 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------ 244 (489)
...|+|||+|..|+-+|..|++.|.+|.++++.+..-.
T Consensus 23 t~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d 102 (322)
T d1d4ca2 23 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND 102 (322)
T ss_dssp ECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred cceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccC
Confidence 35699999999999999999999999999997531100
Q ss_pred ---------------------------------------------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeC
Q 011267 245 ---------------------------------------------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAG 279 (489)
Q Consensus 245 ---------------------------------------------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~ 279 (489)
......+...+.+.+.++|+++++ ++.++++..+
T Consensus 103 ~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~-~t~v~~li~d 181 (322)
T d1d4ca2 103 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRL-NSRVVRILED 181 (322)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEET-TEEEEEEECC
T ss_pred HHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEE-eeeccccccc
Confidence 000123445566667778999999 9999999877
Q ss_pred CCCcEEEEEeCC--C--cEEEcCEEEEccCCCCCC-c--------------------------hhhhcCCee---cCCcE
Q 011267 280 SDGRVAAVKLED--G--STIDADTIVIGIGAKPTV-S--------------------------PFERVGLNS---SVGGI 325 (489)
Q Consensus 280 ~~~~v~~v~~~~--g--~~i~aD~vi~a~G~~p~~-~--------------------------~~~~~gl~~---~~g~i 325 (489)
++++|.+|...+ + ..+.|+.||+|+|--... + +...+|... +.+++
T Consensus 182 ~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~~ 261 (322)
T d1d4ca2 182 ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGGL 261 (322)
T ss_dssp SSSCCCEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCEE
T ss_pred ccccccceEEEeecccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccceE
Confidence 778887777643 2 258999999999943221 1 111223221 12233
Q ss_pred -------EeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 326 -------QVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 326 -------~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
.+++..+|.+|++||+|+|+..-. ..++.. -.++..+...|+++..+.
T Consensus 262 ~~~~~~~~~~~~~~~~v~Glya~Ge~~~gvh-G~nrlg-~~~~~e~~v~g~~ag~~a 316 (322)
T d1d4ca2 262 VIDTKAEVKSEKTGKPITGLYAAGEVTGGVH-GANRLG-GNAISDIVTYGRIAGASA 316 (322)
T ss_dssp CCCTTCEEEBTTTSSEEEEEEECGGGBCSSS-TTSCCT-THHHHHHHHHHHHHHHHH
T ss_pred EecCceEEEECCCCCEeCceEEchhhcCCcc-ccccch-hhHHHHHHHHHHHHHHHH
Confidence 344455678899999999985311 111111 123445555555555444
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=2.2e-10 Score=110.15 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=67.5
Q ss_pred HHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC--------CCCc-hhhhcCCee-cCC
Q 011267 254 RYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK--------PTVS-PFERVGLNS-SVG 323 (489)
Q Consensus 254 ~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~--------p~~~-~~~~~gl~~-~~g 323 (489)
...+.+++.|+++++ ++.|++|..+ ++.+ .|++.+|+++.||.||+|++.. |..+ ...+..-.. ..+
T Consensus 212 ~~~~l~~~~g~~i~~-~~~v~~I~~~-~~~v-~v~~~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~~~~~~~ 288 (383)
T d2v5za1 212 VSERIMDLLGDRVKL-ERPVIYIDQT-RENV-LVETLNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMITRVFPPG 288 (383)
T ss_dssp HHHHHHHHHGGGEEE-SCCEEEEECS-SSSE-EEEETTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTTSCCCTT
T ss_pred HHHHHHHHcCCeEEe-cCcceEEEec-CCeE-EEEECCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHHHhccCC
Confidence 344556678999999 9999999854 3444 5889999999999999998632 1110 001110000 011
Q ss_pred c-EEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 324 G-IQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 324 ~-i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
. -.....+.....+|+.+|+....... .....|..+|+.+|..++.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~--------g~~~ga~~~g~~~a~~i~~ 335 (383)
T d2v5za1 289 ILTQYGRVLRQPVDRIYFAGTETATHWS--------GYMEGAVEAGERAAREILH 335 (383)
T ss_dssp HHHHHGGGTTCCBTTEEECSGGGCSSST--------TSHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhcCCcCceEeccccccccCC--------cchHHHHHHHHHHHHHHHH
Confidence 1 11122234455678888876543221 1445577888888877653
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.98 E-value=6.6e-10 Score=104.62 Aligned_cols=69 Identities=23% Similarity=0.317 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCchhhhcCCee
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSPFERVGLNS 320 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~~gl~~ 320 (489)
+..+...+.+.+++.|++++. +++|+++... ++++..|.+++| ++.||.||+|+|.... ++++.+|+..
T Consensus 147 p~~l~~~l~~~a~~~gv~i~~-~~~V~~i~~~-~~~v~~V~T~~g-~i~a~~VV~aaG~~s~-~l~~~~g~~l 215 (305)
T d1pj5a2 147 AARAVQLLIKRTESAGVTYRG-STTVTGIEQS-GGRVTGVQTADG-VIPADIVVSCAGFWGA-KIGAMIGMAV 215 (305)
T ss_dssp HHHHHHHHHHHHHHTTCEEEC-SCCEEEEEEE-TTEEEEEEETTE-EEECSEEEECCGGGHH-HHHHTTTCCC
T ss_pred hhhhhhhHHhhhhcccccccC-CceEEEEEEe-CCEEEEEeccce-eEECCEEEEecchhHH-HHHHHcCCcc
Confidence 456777888889999999999 9999999864 677778888877 6999999999998765 6777777765
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.94 E-value=5.8e-10 Score=97.72 Aligned_cols=134 Identities=20% Similarity=0.225 Sum_probs=88.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcchhh--------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR--------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNL 276 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~l~~--------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i 276 (489)
.++||+|||||++|+++|..|+++|. +|+++++.+.+... .................+.++.. +..+...
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~ 81 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIIC-GKSLSEN 81 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEE-SCCBSTT
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEe-eEEeccc
Confidence 47899999999999999999999998 59999999876431 12344555555666777888887 6555221
Q ss_pred EeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCCch--hh--hcCCeec-CCcEEeC-CCCCCCCCCeEEeccccccCC
Q 011267 277 EAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTVSP--FE--RVGLNSS-VGGIQVD-GQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 277 ~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~--~~--~~gl~~~-~g~i~vd-~~~~t~~~~Iya~GD~a~~~~ 349 (489)
. ....+..+..++.+++++|..+...+ .. ....... .+....+ ..++|+.+.||++||++...+
T Consensus 82 ~---------~~~~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vigg~~ 151 (196)
T d1gtea4 82 E---------ITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMAN 151 (196)
T ss_dssp S---------BCHHHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGGCSCC
T ss_pred e---------eeeehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCcccccccccccCCcc
Confidence 1 11122233557889999987543222 11 1111111 2344444 468899999999999986543
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.94 E-value=1.2e-09 Score=87.21 Aligned_cols=96 Identities=18% Similarity=0.335 Sum_probs=73.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..|.+.+.+..+|+||++.+... |.+ ++ .+ .....+.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL---~~~--------d~---~~-----------~~~l~~~ 73 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL---RGF--------DH---TL-----------REELTKQ 73 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS---TTS--------CH---HH-----------HHHHHHH
T ss_pred cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh---ccc--------ch---HH-----------HHHHHHH
Confidence 35789999999999999999988876556899999875421 000 00 00 1234677
Q ss_pred HHHCCcEEEeCCcEEEEeCC---CCEEEeCCCeEEeeCcEEecC
Q 011267 130 YKEKGIEMIYQDPVTSIDIE---KQTLITNSGKLLKYGSLIVAT 170 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~---~~~v~~~~g~~i~yd~lvlAT 170 (489)
+++.|+++++++++++++.. ...+++++|+++++|.+++|.
T Consensus 74 l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI 117 (117)
T d1aoga2 74 LTANGIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI 117 (117)
T ss_dssp HHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred HHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence 88999999999999999753 246889999999999999983
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.92 E-value=4.8e-10 Score=105.05 Aligned_cols=121 Identities=18% Similarity=0.206 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC----CC-CCCc----cc-cCCCCCCCC---CCCCCCc
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY----ER-PALT----KG-YLFPLDKKP---ARLPGFH 115 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y----~~-~~l~----~~-~~~~~~~~~---~~~~~~~ 115 (489)
.+..||+|||||++||++|.+|++.|. +++|+|+.+...- ++ |.+. .. +........ ...+...
T Consensus 5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~---~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~ 81 (298)
T d1w4xa1 5 PEEVDVLVVGAGFSGLYALYRLRELGR---SVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY 81 (298)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred CCCCCEEEECccHHHHHHHHHHHhCCC---CEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCcccc
Confidence 467899999999999999999999987 6999999876531 11 1110 00 000000000 0000000
Q ss_pred cccCCCCCCCChhHHHHCCc--EEEeCCcEEEEeC--CCC--EEEeCCCeEEeeCcEEecCCCC
Q 011267 116 TCVGSGGERQTPEWYKEKGI--EMIYQDPVTSIDI--EKQ--TLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~--~~~--~v~~~~g~~i~yd~lvlATG~~ 173 (489)
.........+.++.+++++ .++++++|+++.. +.. .|.+.++.++.+|.||+|||..
T Consensus 82 -p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l 144 (298)
T d1w4xa1 82 -ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 144 (298)
T ss_dssp -CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred -CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence 0000001123345566787 5899999999963 322 7889999999999999999953
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.91 E-value=1.8e-09 Score=85.98 Aligned_cols=93 Identities=16% Similarity=0.223 Sum_probs=70.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||||+.|+.+|..|++.|. +|+|+++.+... +.+ ++ .+ .....+.
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~il---~~~--------d~---~~-----------~~~~~~~ 72 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKRLGI---DSYIFARGNRIL---RKF--------DE---SV-----------INVLEND 72 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHTTTC---EEEEECSSSSSC---TTS--------CH---HH-----------HHHHHHH
T ss_pred CCCEEEEECCchHHHHHHHHHHhccc---cceeeehhcccc---ccc--------cH---HH-----------HHHHHHH
Confidence 35789999999999999999999875 799999876531 000 00 00 1234567
Q ss_pred HHHCCcEEEeCCcEEEEeCCC---CEEEeCCCeEE-eeCcEEecC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEK---QTLITNSGKLL-KYGSLIVAT 170 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~---~~v~~~~g~~i-~yd~lvlAT 170 (489)
+++.|++++++++|++++... .++.+.+|+++ .||.+++|.
T Consensus 73 l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 73 MKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp HHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred HHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 788999999999999997432 36888999887 589999983
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.91 E-value=1.9e-09 Score=86.22 Aligned_cols=95 Identities=17% Similarity=0.319 Sum_probs=71.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
....+++|||||+.|+.+|..|++.|. +|++++..+... |.+.. .+ .....+
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~---~Vtiv~~~~~ll---~~~d~-----------ei-----------~~~l~~ 71 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWARLGA---EVTVLEAMDKFL---PAVDE-----------QV-----------AKEAQK 71 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTSCH-----------HH-----------HHHHHH
T ss_pred cCCCeEEEECCChHHHHHHHHHHHcCC---ceEEEEeecccC---Ccccc-----------hh-----------HHHHHH
Confidence 345789999999999999999999986 799999876521 11100 00 123467
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCC---eEEeeCcEEecCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSG---KLLKYGSLIVATG 171 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g---~~i~yd~lvlATG 171 (489)
++++.|+++++++++++++.++. ++++.++ +++.+|.+++|+|
T Consensus 72 ~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 72 ILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp HHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred HHHhcCceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 78899999999999999987655 4555443 5789999999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.90 E-value=1.4e-09 Score=87.57 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=69.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... .+.. .+ .....+++
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~---~Vtlv~~~~~l~----~~d~-----------~~-----------~~~~~~~l 82 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGY---HVKLIHRGAMFL----GLDE-----------EL-----------SNMIKDML 82 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTC---EEEEECSSSCCT----TCCH-----------HH-----------HHHHHHHH
T ss_pred CCcEEEECCcHHHHHHHHHhhcccc---eEEEEecccccc----CCCH-----------HH-----------HHHHHHHH
Confidence 4689999999999999999999986 799999876531 0111 00 12345678
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGC 172 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~ 172 (489)
++.|+++++++++.+++.+. + +.++..+++|.+|+|||.
T Consensus 83 ~~~GV~~~~~~~v~~~~~~~--v-~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 83 EETGVKFFLNSELLEANEEG--V-LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp HHTTEEEECSCCEEEECSSE--E-EETTEEEECSCEEEECCE
T ss_pred HHCCcEEEeCCEEEEEeCCE--E-EeCCCEEECCEEEEEEEe
Confidence 88999999999999887543 3 457788999999999994
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.89 E-value=2.6e-09 Score=102.04 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=34.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..++|+|||||+|||+||..|++.+. ..+|+|+|+....
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~-~~~v~vfEk~~~i 41 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKA-FDQVTLFERRGSP 41 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTC-CSEEEEECSSSSS
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCC-CCCEEEEECCCCC
Confidence 46789999999999999999998874 4589999999765
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.87 E-value=3.6e-10 Score=106.41 Aligned_cols=34 Identities=32% Similarity=0.416 Sum_probs=31.7
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+|+|+|||+|+.|+.+|..|++.|.+|+++++++
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999999999999999999999753
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.87 E-value=3.6e-10 Score=103.02 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCcEEEEcCceEEEEEeCCC-CcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 250 SLAQRYEQLYQQNGVKFVKVGASIKNLEAGSD-GRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 250 ~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
.+.+.+.+.+++.|+++++ ++.|++|..+++ +++..| +.+|+++.||.||+....-|+
T Consensus 237 ~l~~~l~~~~~~~G~~i~~-~~~V~~I~~~~~~~~v~~v-~~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 237 ELPQGFARLSAIYGGTYML-DTPIDEVLYKKDTGKFEGV-KTKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp HHHHHHHHHHHHTTCEEEC-SCCCCEEEEETTTTEEEEE-EETTEEEECSCEEECGGGCGG
T ss_pred HHHHHHHHHHHhcCCEEEe-CCEeeEEEEECCCCEEEEE-EcCCEEEECCEEEEChhhccC
Confidence 5677888899999999999 999999975544 456554 467889999999987555553
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.86 E-value=2e-09 Score=88.42 Aligned_cols=94 Identities=19% Similarity=0.276 Sum_probs=71.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHH----cCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVE----HGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~----~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
.++++|||||+.|+.+|..|++ .|. +|++|++++..- +. . ++ ..+ ....
T Consensus 37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~---~Vt~i~~~~~~l------~~-~-~~-----~~~-----------~~~~ 89 (137)
T d1m6ia2 37 VKSITIIGGGFLGSELACALGRKARALGT---EVIQLFPEKGNM------GK-I-LP-----EYL-----------SNWT 89 (137)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTC---EEEEECSSSSTT------TT-T-SC-----HHH-----------HHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHhcCC---EEEEecccccCC------cc-c-CC-----HHH-----------HHHH
Confidence 5689999999999999998864 343 899999876531 00 0 00 000 0123
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG 171 (489)
.+.+++.|+++++++.|.+++.++. .+++++|+++.+|.+++|||
T Consensus 90 ~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 90 MEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp HHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred HHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 5677889999999999999986543 68889999999999999999
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.86 E-value=2.5e-09 Score=86.08 Aligned_cols=95 Identities=16% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...++|+|||||+.|+.+|..|++.|. +||+|++.+.. + +. ++ + ..+ .....+
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~---~Vtlie~~~~~-l-----~~-~~-d-----~~~-----------~~~~~~ 80 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGK---KVTVIDILDRP-L-----GV-YL-D-----KEF-----------TDVLTE 80 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSST-T-----TT-TC-C-----HHH-----------HHHHHH
T ss_pred cCCCEEEEECChHHHHHHHHHhhccce---EEEEEEecCcc-c-----cc-cc-c-----hhh-----------HHHHHH
Confidence 345799999999999999999999986 79999987653 1 00 00 0 000 122456
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC-EEEeCCCeEEeeCcEEecC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ-TLITNSGKLLKYGSLIVAT 170 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~-~v~~~~g~~i~yd~lvlAT 170 (489)
++++.|+++++++++.+++.+++ ...+.+|+++++|.+++|.
T Consensus 81 ~l~~~gv~~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 81 EMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV 123 (123)
T ss_dssp HHHTTTEEEEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred HhhcCCeEEEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence 78888999999999999987654 3446788899999999983
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.85 E-value=1.7e-08 Score=81.22 Aligned_cols=107 Identities=24% Similarity=0.381 Sum_probs=81.6
Q ss_pred CCceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHh-cC
Q 011267 185 LPGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQ-NG 263 (489)
Q Consensus 185 ~~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~-~G 263 (489)
..|++|+. .+ ...+..+++|+|||+|.+++|.|..|.+...+|++++|++.+-. .+.. .+.+++ .+
T Consensus 14 gkGV~yca---~c---D~~~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~---~~~~----~~~~~~~~~ 80 (126)
T d1fl2a2 14 TKGVTYCP---HC---DGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA---DQVL----QDKLRSLKN 80 (126)
T ss_dssp TTTEESCH---HH---HGGGGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS---CHHH----HHHHHTCTT
T ss_pred CCCEEEEE---ec---ChhhcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc---cccc----ccccccccc
Confidence 35777752 22 23467899999999999999999999999999999999986543 3332 233443 56
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCC---C--cEEEcCEEEEccCC
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLED---G--STIDADTIVIGIGA 306 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~---g--~~i~aD~vi~a~G~ 306 (489)
|++++ ++.++++..+ ++.+.++++.+ | +++++|.+++++|.
T Consensus 81 I~v~~-~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 81 VDIIL-NAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEEES-SEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred eeEEc-CcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence 99999 9999999843 45677888754 4 36999999999984
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.80 E-value=3.5e-10 Score=102.02 Aligned_cols=107 Identities=13% Similarity=0.134 Sum_probs=64.2
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCC-CCCCCCCccccCCCCCCCChhHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKK-PARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
++|+|||||||||+||.+|++.+. +.+|+|+|+.+.+.-. +. +..+.... ...+ ......++
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~-~~~V~v~e~~~~~gG~---~~--~~~~~~~~~~~~~-----------~~~~~~~~ 64 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHS-RAHVDIYEKQLVPFGL---VR--FGVAPDHPEVKNV-----------INTFTQTA 64 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCS-SCEEEEECSSSSSCTH---HH--HTSCTTCGGGGGH-----------HHHHHHHH
T ss_pred CeEEEECccHHHHHHHHHHHhcCC-CCeEEEEeCCCCCCce---eh--hhccccccccccc-----------hhhhhhhh
Confidence 589999999999999999999865 6689999998764210 00 00010000 0000 01234556
Q ss_pred HHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIG 182 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g 182 (489)
.+.+++++.++.|. .+ +...+ -.-.||.+++|||+.+...+..++
T Consensus 65 ~~~~~~~~~~~~v~---~~---~~~~~-l~~~~d~v~~a~Ga~~~~~~~~~~ 109 (230)
T d1cjca2 65 RSDRCAFYGNVEVG---RD---VTVQE-LQDAYHAVVLSYGAEDKSRPIDPS 109 (230)
T ss_dssp TSTTEEEEBSCCBT---TT---BCHHH-HHHHSSEEEECCCCCEECCCCCTT
T ss_pred hcCCeeEEeeEEeC---cc---ccHHH-HHhhhceEEEEeeccccccccccc
Confidence 67789998876541 11 11000 012699999999997654444443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.78 E-value=7.8e-09 Score=88.44 Aligned_cols=89 Identities=17% Similarity=0.214 Sum_probs=71.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh----------hhCHHHHHHHHHHHHhcCcEEEEcCceEE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR----------LFTPSLAQRYEQLYQQNGVKFVKVGASIK 274 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~----------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~ 274 (489)
..+++|+|||+|+.|+++|..|+++|++|+++++.+.+... ....++.+++.+.+++.||++++ |+.|+
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l-~~~Vt 119 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKL-NHTVT 119 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEE-SCCCC
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEe-CCEEc
Confidence 46799999999999999999999999999999998755221 12246677888899999999999 87663
Q ss_pred EEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCCC
Q 011267 275 NLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPTV 310 (489)
Q Consensus 275 ~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~~ 310 (489)
. + ....+|.||+|+|..|..
T Consensus 120 ~---------------~-~~~~~d~vilAtG~~~~~ 139 (179)
T d1ps9a3 120 A---------------D-QLQAFDETILASGIPNRA 139 (179)
T ss_dssp S---------------S-SSCCSSEEEECCCEECCT
T ss_pred c---------------c-ccccceeEEEeecCCCcc
Confidence 1 1 134689999999998864
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.78 E-value=1.7e-09 Score=95.82 Aligned_cols=114 Identities=12% Similarity=0.079 Sum_probs=66.9
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCC-CCCccccCCCCC---CCCCCCCCCccccCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYER-PALTKGYLFPLD---KKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~-~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 126 (489)
.|||||||||+||+.||..+++.|. ++.||+.+....... +.-..+...... .....-+..... ....
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR~G~---ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~-----raQ~ 73 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQKGV---RVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAF-----HARA 73 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHH-----HHHH
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCC---cEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhH-----HHHH
Confidence 5899999999999999999999987 699998763221110 000000000000 000000000000 0000
Q ss_pred -hhHHHHCCcEEEeCCcEEEEeCCCC---EEEeCCCeEEeeCcEEecCCCC
Q 011267 127 -PEWYKEKGIEMIYQDPVTSIDIEKQ---TLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 127 -~~~~~~~~i~~~~~~~V~~id~~~~---~v~~~~g~~i~yd~lvlATG~~ 173 (489)
.......+++++.+ +|.++..++. .|.+.+|.++.++.+||+||..
T Consensus 74 k~~l~~~~nL~i~q~-~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 74 KYLLEGLRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp HHHHHTCTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHhhhcCHHHHhc-cceeeEecccceeeEEeccccEEEEeEEEEccCcc
Confidence 11123358888874 7888765544 4678899999999999999964
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.77 E-value=6.4e-08 Score=90.77 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=74.5
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh-------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ------------------------------------------- 244 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~------------------------------------------- 244 (489)
-.|+|||+|..|+-+|..|++.|.+|.++++.+..-.
T Consensus 17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 96 (308)
T d1y0pa2 17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP 96 (308)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccch
Confidence 3699999999999999999999999999997621100
Q ss_pred ------------------h--------------------------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 245 ------------------R--------------------------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 245 ------------------~--------------------------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
. .....+...+.+.+++.|+++++ ++.++++..++
T Consensus 97 ~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~-~~~v~~li~~~ 175 (308)
T d1y0pa2 97 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRM-NTRGIEVLKDD 175 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEES-SEEEEEEEECT
T ss_pred HHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEE-eeccchhhhhc
Confidence 0 00012334455556678999999 99999988777
Q ss_pred CCcEEEEEeCC--C--cEEEcCEEEEccCC
Q 011267 281 DGRVAAVKLED--G--STIDADTIVIGIGA 306 (489)
Q Consensus 281 ~~~v~~v~~~~--g--~~i~aD~vi~a~G~ 306 (489)
++++.+|...+ + .++.|+.||+|+|-
T Consensus 176 ~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG 205 (308)
T d1y0pa2 176 KGTVKGILVKGMYKGYYWVKADAVILATGG 205 (308)
T ss_dssp TSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred ccccccccccccccceeEeecCeEEEccCc
Confidence 78888888753 2 25899999999994
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.75 E-value=1.3e-08 Score=81.59 Aligned_cols=93 Identities=19% Similarity=0.249 Sum_probs=69.1
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++|+|||||+.|+..|..|++.|. +|++++..+... +.+.. .+ .....+.+
T Consensus 22 ~~~vvVvGgG~ig~E~A~~l~~~g~---~vt~i~~~~~~l---~~~d~-----------~~-----------~~~~~~~l 73 (121)
T d1mo9a2 22 GSTVVVVGGSKTAVEYGCFFNATGR---RTVMLVRTEPLK---LIKDN-----------ET-----------RAYVLDRM 73 (121)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCTTT---TCCSH-----------HH-----------HHHHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcch---hheEeeccchhh---ccccc-----------ch-----------hhhhhhhh
Confidence 5799999999999999999999875 799999876421 11110 00 12346678
Q ss_pred HHCCcEEEeCCcEEEEeCCCC----EE---EeCCCeEEeeCcEEecCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ----TL---ITNSGKLLKYGSLIVATG 171 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~----~v---~~~~g~~i~yd~lvlATG 171 (489)
++.++++++++++.+++.... .+ ...+++++++|.+++|+|
T Consensus 74 ~~~gI~v~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 74 KEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp HHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred hccccEEEcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 889999999999999986542 11 233557799999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.74 E-value=6.8e-08 Score=90.08 Aligned_cols=99 Identities=13% Similarity=0.154 Sum_probs=80.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh----------------------------------hh--hCHHH
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ----------------------------------RL--FTPSL 251 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~----------------------------------~~--~~~~~ 251 (489)
-.|+|||+|++|+-+|..|++.|.+|+++++.+.+-. .. -.+++
T Consensus 8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e~ 87 (298)
T d1w4xa1 8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI 87 (298)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccchH
Confidence 4699999999999999999999999999998643200 00 12467
Q ss_pred HHHHHHHHHhcCc--EEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 252 AQRYEQLYQQNGV--KFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 252 ~~~l~~~l~~~Gv--~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
.+++++..++.++ .+.+ +++|+++..+++...-.|.+.+++++.||.||+|+|.-
T Consensus 88 ~~Yl~~~a~~~~L~~~I~f-~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~l 144 (298)
T d1w4xa1 88 LRYINFVADKFDLRSGITF-HTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQL 144 (298)
T ss_dssp HHHHHHHHHHTTGGGGEEC-SCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSC
T ss_pred HHHHHHHHHHcCCcccccC-CcEEEEEEEecCCCceeeccccccccccceEEEeeccc
Confidence 7788888888898 5899 99999998666656667999999999999999999964
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.74 E-value=7.1e-08 Score=90.96 Aligned_cols=99 Identities=18% Similarity=0.261 Sum_probs=76.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch--------------------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL-------------------------------------------- 243 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l-------------------------------------------- 243 (489)
..|+|||+|..|+-+|..+++.|.+|.++++.+..-
T Consensus 20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~ 99 (317)
T d1qo8a2 20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI 99 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence 359999999999999999999999999998752110
Q ss_pred -----------------------------------hh--------hhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCC
Q 011267 244 -----------------------------------QR--------LFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGS 280 (489)
Q Consensus 244 -----------------------------------~~--------~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~ 280 (489)
++ .....+...+.+.+++.|+++++ ++.++++..++
T Consensus 100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~-~~~v~~l~~~~ 178 (317)
T d1qo8a2 100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRL-NSRVVKLVVND 178 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEEC-SEEEEEEEECT
T ss_pred hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeee-ccchhheeecc
Confidence 00 00123555667777889999999 99999987777
Q ss_pred CCcEEEEEeCC--Cc--EEEcCEEEEccCCC
Q 011267 281 DGRVAAVKLED--GS--TIDADTIVIGIGAK 307 (489)
Q Consensus 281 ~~~v~~v~~~~--g~--~i~aD~vi~a~G~~ 307 (489)
++++.+|...+ ++ .+.|+.||+|+|-.
T Consensus 179 ~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~ 209 (317)
T d1qo8a2 179 DHSVVGAVVHGKHTGYYMIGAKSVVLATGGY 209 (317)
T ss_dssp TSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred cccceeeEeecccceEEEEeccceEEecccc
Confidence 88888877653 32 58899999999953
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.73 E-value=1.9e-08 Score=83.77 Aligned_cols=94 Identities=22% Similarity=0.387 Sum_probs=66.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
.+++|+|||||.+|+|+|..+.++|.+ |++++|++..-... .+ .....+...+++++. +..++++... ++++
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a-~~----~~~~~a~~~~~~~~~-~~~~~ei~~~-~~~~ 116 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRA-VP----EEVELAKEEKCEFLP-FLSPRKVIVK-GGRI 116 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCS-CH----HHHHHHHHTTCEEEC-SEEEEEEEEE-TTEE
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhcc-ch----hheeecccccceeEe-ccccEEEEec-CCce
Confidence 357899999999999999999999875 88998876543211 11 222345667899998 8888888743 3444
Q ss_pred EEEEe------CCC---------cEEEcCEEEEccCC
Q 011267 285 AAVKL------EDG---------STIDADTIVIGIGA 306 (489)
Q Consensus 285 ~~v~~------~~g---------~~i~aD~vi~a~G~ 306 (489)
..+.. ++| .+|+||.||+|+|.
T Consensus 117 ~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~ 153 (153)
T d1gtea3 117 VAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS 153 (153)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred EEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence 44332 122 36999999999983
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.71 E-value=6.8e-09 Score=95.14 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCC---CCccc---cC--CCC-CCCC-CCCCCCccc-
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERP---ALTKG---YL--FPL-DKKP-ARLPGFHTC- 117 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~---~l~~~---~~--~~~-~~~~-~~~~~~~~~- 117 (489)
++..+|+|||||+||++||..|+++|+ +|+|+|+++....... .++.. .+ ... .... .....+...
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~~G~---~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 78 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRDAGV---DVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVD 78 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEE
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEe
Confidence 356789999999999999999999987 7999998754211100 00000 00 000 0000 000000000
Q ss_pred ---------cCCCCCCCCh-----hH-HHHCCcEEEeCCcEEEEeCCC--CEEEeCCCeEEeeCcEEecCCCCC
Q 011267 118 ---------VGSGGERQTP-----EW-YKEKGIEMIYQDPVTSIDIEK--QTLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 118 ---------~~~~~~~~~~-----~~-~~~~~i~~~~~~~V~~id~~~--~~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.......... .. ....+..++.+.+++.++... -+++++||.++.+|.+|.|.|...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s 152 (265)
T d2voua1 79 ALTGERVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS 152 (265)
T ss_dssp TTTCCEEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred ccCCceecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence 0000000001 11 123467788999999998654 467789999999999999999654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.70 E-value=1.7e-08 Score=80.85 Aligned_cols=93 Identities=18% Similarity=0.233 Sum_probs=64.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
...+++|||||+.|+.+|..|++.|. +|+|++++...+. + ++ .+ .....+.
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~~lG~---~Vtii~~~~~l~~----~--------D~---~~-----------~~~l~~~ 69 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLAGIGL---DVTVMVRSILLRG----F--------DQ---DM-----------ANKIGEH 69 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSSTT----S--------CH---HH-----------HHHHHHH
T ss_pred CCCeEEEECCCccHHHHHHHHhhcCC---eEEEEEechhhcc----C--------CH---HH-----------HHHHHHH
Confidence 45689999999999999999999986 7999986532211 0 00 00 1234567
Q ss_pred HHHCCcEEEeCCcEEEEeCC----CC--EEEeCC--C---eEEeeCcEEecCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIE----KQ--TLITNS--G---KLLKYGSLIVATG 171 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~----~~--~v~~~~--g---~~i~yd~lvlATG 171 (489)
+++.|+++++++.|+++... .. .++... + ..+.+|.|++|+|
T Consensus 70 l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 70 MEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp HHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred HHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 88899999999988887532 11 333322 2 2467999999998
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=8.7e-11 Score=106.55 Aligned_cols=154 Identities=13% Similarity=0.125 Sum_probs=83.2
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCC----CCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMA----DGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQT 126 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~----~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (489)
+++|+|||||||||+||++|+++|++ ..+|+|+|+.+.+.-. +..+ ..+.......+ ....
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~---~~~g-i~p~~~~~~~~-----------~~~~ 66 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGL---VRSG-VAPDHPKIKSI-----------SKQF 66 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTH---HHHT-SCTTCTGGGGG-----------HHHH
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCe---eeec-cCcccccchhh-----------hhhh
Confidence 46899999999999999999998741 2479999998764321 0000 00100000000 1122
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCCCCCCCCCCCCce----EeecCHHHH---HH
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASRFPEKIGGYLPGV----HYIRDVADA---DA 199 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~~p~~~g~~~~gv----~~~~~~~~~---~~ 199 (489)
..++.+.+++++.+.++. ..+..++ -...||++++|||+.+..+.. ++...+.. ..+...... ..
T Consensus 67 ~~~~~~~g~~~~~~~~v~------~~~~~~~-~~~~~~~v~~atGa~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 138 (239)
T d1lqta2 67 EKTAEDPRFRFFGNVVVG------EHVQPGE-LSERYDAVIYAVGAQSRGVPT-PGLPFDDQSGTIPNVGGRINGSPNEY 138 (239)
T ss_dssp HHHHTSTTEEEEESCCBT------TTBCHHH-HHHHSSEEEECCCCCEECCCC-TTSCCBTTTTBCCEETTEETTCSSEE
T ss_pred hhhhccCCceEEEEEEec------cccchhh-hhccccceeeecCCCcccccc-ccccccccccchhhhhhhhccccccc
Confidence 344566789998886541 1111111 123699999999987654332 22221111 111100000 00
Q ss_pred HHHhhcCCCcEEEECCCHHHHHHHHHHH
Q 011267 200 LISSLEKAKKVVVVGGGYIGMEVAAAAV 227 (489)
Q Consensus 200 ~~~~~~~~~~vvViG~G~~g~e~A~~l~ 227 (489)
.......+++++|+|+|..+++++..+.
T Consensus 139 ~~~~~~~g~~~vv~g~g~~a~d~a~~~v 166 (239)
T d1lqta2 139 VVGWIKRGPTGVIGTNKKDAQDTVDTLI 166 (239)
T ss_dssp ECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred cceeecCCCEEEEeCCCchHHHHHHHHH
Confidence 0001123667888888999999887653
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.66 E-value=1.8e-08 Score=80.22 Aligned_cols=93 Identities=16% Similarity=0.331 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...++++|||||+.|+.+|..|++.|. +|||+++.+... +.+ +. .+ .....+
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~---~Vtlve~~~~il---~~~--------d~---~~-----------~~~l~~ 71 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYANFGT---KVTILEGAGEIL---SGF--------EK---QM-----------AAIIKK 71 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSSSSS---TTS--------CH---HH-----------HHHHHH
T ss_pred hcCCeEEEECCCccceeeeeeeccccc---EEEEEEecceec---ccc--------cc---hh-----------HHHHHH
Confidence 345789999999999999999999986 799999887531 000 00 00 123456
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeC-CC--eEEeeCcEEec
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITN-SG--KLLKYGSLIVA 169 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~-~g--~~i~yd~lvlA 169 (489)
.+++.|++++++++|++++.... .+.+. +| +++.+|.+++.
T Consensus 72 ~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 72 RLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT 117 (117)
T ss_dssp HHHHTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred HHHhcCCEEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence 78889999999999999976543 34433 34 46899999873
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.65 E-value=9.8e-09 Score=89.36 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=68.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCChh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPE 128 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (489)
+.+||+||||||+|+.||.+|++.|. +++|||++...... ... .....+++++.. .+.........
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar~g~---~v~iie~~~~~g~~--~~~--------~~i~~~~~~~~~~~~~~~~~~~~~ 70 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAARANL---QPVLITGMEKGGQL--TTT--------TEVENWPGDPNDLTGPLLMERMHE 70 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHTTTC---CCEEECCSSTTGGG--GGC--------SBCCCSTTCCSSCBHHHHHHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCC---ceEEEEeecccccc--ccc--------chhhhhhccccccchHHHHHHHHH
Confidence 46799999999999999999999986 69999976532110 000 000111111100 00000111223
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCCCeEEeeCcEEecCCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNSGKLLKYGSLIVATGCTAS 175 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~g~~i~yd~lvlATG~~~~ 175 (489)
...+.++++..+ +|+.++.... .+.. ....+..+.++++||..++
T Consensus 71 ~~~~~~~~~~~~-~V~~~~~~~~~~~v~~-~~~~~~~~~viva~G~~~~ 117 (190)
T d1trba1 71 HATKFETEIIFD-HINKVDLQNRPFRLNG-DNGEYTCDALIIATGASAR 117 (190)
T ss_dssp HHHHTTCEEECC-CEEEEECSSSSEEEEE-SSCEEEEEEEEECCCEEEC
T ss_pred HHHhcCcEEecc-eeEEEecCCCcEEEEE-eeeeEeeeeeeeecceeee
Confidence 345678888864 7888887654 3443 4456899999999998654
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.64 E-value=1.6e-08 Score=81.38 Aligned_cols=93 Identities=18% Similarity=0.246 Sum_probs=67.3
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHH
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWY 130 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (489)
.++++|||||+.|+.+|..|++.|. +|+|+++.+... |.+ ++ .+ .....+.+
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~~~G~---~Vtlv~~~~~~l---~~~--------d~---~~-----------~~~~~~~l 73 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILSALGS---KTSLMIRHDKVL---RSF--------DS---MI-----------STNCTEEL 73 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSC---TTS--------CH---HH-----------HHHHHHHH
T ss_pred CCEEEEEcCCccHHHHHHHHhcCCc---EEEEEeeccccc---cch--------hh---HH-----------HHHHHHHH
Confidence 4789999999999999999999986 799999976531 000 00 00 12345678
Q ss_pred HHCCcEEEeCCcEEEEeCCCC--EEE---eCCCe------EEeeCcEEecCC
Q 011267 131 KEKGIEMIYQDPVTSIDIEKQ--TLI---TNSGK------LLKYGSLIVATG 171 (489)
Q Consensus 131 ~~~~i~~~~~~~V~~id~~~~--~v~---~~~g~------~i~yd~lvlATG 171 (489)
++.|++++++++++++..... .+. ..+|+ .+.+|.+++|+|
T Consensus 74 ~~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G 125 (125)
T d3grsa2 74 ENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG 125 (125)
T ss_dssp HHTTCEEETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred HHCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence 899999999999999975443 222 22332 467999999998
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.63 E-value=1.8e-08 Score=81.01 Aligned_cols=95 Identities=15% Similarity=0.211 Sum_probs=69.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
....+++|||||+.|+.+|..+++.|. +|++++..+... |.+ +. .+ .....+
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~---~Vtive~~~~il---~~~--------d~---~~-----------~~~l~~ 75 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYSTLGS---RLDVVEMMDGLM---QGA--------DR---DL-----------VKVWQK 75 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTS--------CH---HH-----------HHHHHH
T ss_pred ccCCeEEEECCCHHHHHHHHHhhcCCC---EEEEEEeecccc---ccc--------hh---hH-----------HHHHHH
Confidence 345789999999999999999999986 799999876421 000 00 00 123456
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCC--EEEeCC--C--eEEeeCcEEecCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQ--TLITNS--G--KLLKYGSLIVATG 171 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~--~v~~~~--g--~~i~yd~lvlATG 171 (489)
.+++.+++++.++++.++..+.. .+.+.+ | +++.+|.+++|+|
T Consensus 76 ~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 76 QNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp HHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred HHHHcCcccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 77889999999999999875543 444433 3 3699999999998
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=98.61 E-value=5.6e-07 Score=85.19 Aligned_cols=123 Identities=17% Similarity=0.240 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCCCC---------------
Q 011267 251 LAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKPTV--------------- 310 (489)
Q Consensus 251 ~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~--------------- 310 (489)
+...+.+..++.|++++. ++.+.++..+ ++++..+.. .+|+ ++.|+.||+|||.-...
T Consensus 160 i~~~l~~~~~~~gv~i~~-~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~ 237 (336)
T d2bs2a2 160 MLFAVANECLKLGVSIQD-RKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGT 237 (336)
T ss_dssp HHHHHHHHHHHHTCEEEC-SEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHH
T ss_pred HHHHHHHHHHhccccccc-eeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhh
Confidence 344455666778999999 9999988754 566655544 4564 58899999999854211
Q ss_pred chhhhcCC-ee-cCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 311 SPFERVGL-NS-SVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 311 ~~~~~~gl-~~-~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
.+....|. .. +-++|.+|+..+|+.|++|++||++........+.. -.....+...+...++..+
T Consensus 238 ~~~~~~G~~~l~~~~~iq~~~~~~t~~~gl~a~G~~~~~~~~~~~~~~-~~~~~e~~~~~~~~ge~~~ 304 (336)
T d2bs2a2 238 AIALETGIAQLGNMGGIRTDYRGEAKLKGLFSAGEAACWDMHGFNRLG-GNSVSEAVVAGMIVGEYFA 304 (336)
T ss_dssp HHHHTTSSSCEECCCEEECCTTSBCSSBTEEECGGGEECCSSTTCCCT-THHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhccccceeechhhcccCCcceeccccccccccccccch-hhccchhhhhcchhHHHHH
Confidence 12233453 23 457899999999999999999998764333222211 1233444445555554443
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=3.1e-08 Score=79.27 Aligned_cols=92 Identities=17% Similarity=0.321 Sum_probs=66.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
.+++++|||||+.|+.+|..|++.|. +|||+++.+... |.+.. .+ .....+.
T Consensus 22 ~p~~~vIiG~G~ig~E~A~~l~~lG~---~Vtii~~~~~~l---~~~d~-----------ei-----------~~~l~~~ 73 (122)
T d1v59a2 22 IPKRLTIIGGGIIGLEMGSVYSRLGS---KVTVVEFQPQIG---ASMDG-----------EV-----------AKATQKF 73 (122)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSSSSS---SSSCH-----------HH-----------HHHHHHH
T ss_pred CCCeEEEECCCchHHHHHHHHHhhCc---ceeEEEeccccc---hhhhh-----------hh-----------HHHHHHH
Confidence 45789999999999999999999986 799999876531 11100 00 1234567
Q ss_pred HHHCCcEEEeCCcEEEEeCC--CCE--EEeCCC-----eEEeeCcEEec
Q 011267 130 YKEKGIEMIYQDPVTSIDIE--KQT--LITNSG-----KLLKYGSLIVA 169 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~--~~~--v~~~~g-----~~i~yd~lvlA 169 (489)
+++.|++++++++|.++... +.. +++.++ .++++|.|++|
T Consensus 74 l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 74 LKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA 122 (122)
T ss_dssp HHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred HHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence 88899999999999998753 333 333332 46899999987
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.59 E-value=1.6e-08 Score=88.10 Aligned_cols=115 Identities=19% Similarity=0.219 Sum_probs=67.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccc-cCCCCCCCChh
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTC-VGSGGERQTPE 128 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 128 (489)
.++||+||||||||++||.+|++.|. +++|+|+.....+..-. .+... .....+++++.. .+.+...+..+
T Consensus 4 ~~~~VvIIGgGpaGl~aA~~~ar~g~---~v~vie~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~el~~~~~~ 75 (192)
T d1vdca1 4 HNTRLCIVGSGPAAHTAAIYAARAEL---KPLLFEGWMANDIAPGG----QLTTT-TDVENFPGFPEGILGVELTDKFRK 75 (192)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTTC---CCEEECCSSBTTBCTTC----GGGGC-SEECCSTTCTTCEEHHHHHHHHHH
T ss_pred ccceEEEECCCHHHHHHHHHHHHcCC---cEEEEEeeccccccccc----ccccc-hhhhccccccccccchHHHHHHHH
Confidence 46899999999999999999999987 69999976543322111 11000 000011111100 00000011122
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCE-EEeCCCeEEeeCcEEecCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQT-LITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~-v~~~~g~~i~yd~lvlATG~~ 173 (489)
...++++++..+ .|..++...+. ....+...+.+|.+++++|..
T Consensus 76 q~~~~g~~i~~~-~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 76 QSERFGTTIFTE-TVTKVDFSSKPFKLFTDSKAILADAVILAIGAV 120 (192)
T ss_dssp HHHHTTCEEECC-CCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred HHHhhcceeeee-eEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence 235679998864 78888876542 233445668999999999953
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.56 E-value=3e-07 Score=73.92 Aligned_cols=108 Identities=16% Similarity=0.279 Sum_probs=79.2
Q ss_pred CceEeecCHHHHHHHHHhhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcE
Q 011267 186 PGVHYIRDVADADALISSLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVK 265 (489)
Q Consensus 186 ~gv~~~~~~~~~~~~~~~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~ 265 (489)
.|+.|+- .++.. ..+..+++|+|||+|.+++|.|..|++...+|++++|++.+-. .+... .+..+...|+
T Consensus 17 kGVsyca---~CDg~-a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra---~~~~~---~~l~~~~nI~ 86 (130)
T d1vdca2 17 RGISACA---VCDGA-APIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA---SKIMQ---QRALSNPKID 86 (130)
T ss_dssp TTEESCH---HHHTT-SGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS---CHHHH---HHHHTCTTEE
T ss_pred CcEEEEE---EecCc-hHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc---chhhh---hccccCCceE
Confidence 6777762 23310 1256899999999999999999999999999999999987643 33332 3344555699
Q ss_pred EEEcCceEEEEEeCCC-CcEEEEEeCC---C--cEEEcCEEEEcc
Q 011267 266 FVKVGASIKNLEAGSD-GRVAAVKLED---G--STIDADTIVIGI 304 (489)
Q Consensus 266 ~~~~~~~v~~i~~~~~-~~v~~v~~~~---g--~~i~aD~vi~a~ 304 (489)
+++ ++.+.++..++. +.+..+++.+ | +++++|-+++++
T Consensus 87 v~~-~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 87 VIW-NSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEC-SEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred EEe-ccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence 999 999999985432 3466666543 3 479999999874
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.54 E-value=6.3e-08 Score=86.14 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..++|+|||||||||+.||..+++.|. +|+|||++.
T Consensus 3 ~~~~DlvVIG~GpaGl~aA~~aa~~G~---~V~liE~~~ 38 (220)
T d1lvla1 3 TIQTTLLIIGGGPGGYVAAIRAGQLGI---PTVLVEGQA 38 (220)
T ss_dssp CEECSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCC---cEEEEecCC
Confidence 357999999999999999999999987 799999874
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.51 E-value=9.6e-08 Score=76.48 Aligned_cols=92 Identities=14% Similarity=0.311 Sum_probs=67.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++++|||||+.|+.+|..+++.|. +|||+++.+... |.+.. .+ .....+.
T Consensus 24 ~p~~~viiG~G~iglE~A~~~~~~G~---~Vtvi~~~~~~l---~~~d~-----------~~-----------~~~l~~~ 75 (123)
T d1dxla2 24 IPKKLVVIGAGYIGLEMGSVWGRIGS---EVTVVEFASEIV---PTMDA-----------EI-----------RKQFQRS 75 (123)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHHHTC---EEEEECSSSSSS---TTSCH-----------HH-----------HHHHHHH
T ss_pred cCCeEEEEccchHHHHHHHHHHhcCC---eEEEEEEccccC---chhhh-----------cc-----------hhhhhhh
Confidence 45789999999999999999999986 799999886531 11100 00 1234677
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC--EEE--eC-CC--eEEeeCcEEec
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ--TLI--TN-SG--KLLKYGSLIVA 169 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~--~v~--~~-~g--~~i~yd~lvlA 169 (489)
+++.|+++++++++.+++..+. ++. .. +| .++.+|.+++|
T Consensus 76 l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvA 122 (123)
T d1dxla2 76 LEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVS 122 (123)
T ss_dssp HHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECC
T ss_pred hhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEc
Confidence 8899999999999999986543 333 32 33 35899999987
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.50 E-value=2.5e-08 Score=91.28 Aligned_cols=103 Identities=17% Similarity=0.236 Sum_probs=62.2
Q ss_pred CcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCC----------CCchhhhcCCeecCCcEEeC----
Q 011267 263 GVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKP----------TVSPFERVGLNSSVGGIQVD---- 328 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p----------~~~~~~~~gl~~~~g~i~vd---- 328 (489)
+..+.. ++.+..+...+ ..+ .|.+.+|+.+.+|.++++..... ..+-.....+. ..+...++
T Consensus 224 ~~~i~~-~~~v~~i~~~~-~~v-~v~~~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~-~~~~~~~~~~~~ 299 (347)
T d1b5qa1 224 DPRLQL-NKVVREIKYSP-GGV-TVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIY-QFWPVGVNRYEY 299 (347)
T ss_dssp CTTEES-SCCEEEEEECS-SCE-EEEETTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHH-HSCBTTCCHHHH
T ss_pred cccccc-ccccccccccC-ccE-EEEECCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHH-hcCCccccccch
Confidence 456777 88899998643 333 58899999999999999875321 11000000000 01111111
Q ss_pred CCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHhc
Q 011267 329 GQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALLS 377 (489)
Q Consensus 329 ~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~~ 377 (489)
+.++++.++||++||++....+. ....|..+|..+|..|++
T Consensus 300 ~~~~~~~~~v~~~GD~~~~~~~~--------~~~gA~~sG~~aA~~l~~ 340 (347)
T d1b5qa1 300 DQLRAPVGRVYFTGEHTSEHYNG--------YVHGAYLSGIDSAEILIN 340 (347)
T ss_dssp HHHHCCBTTEEECSGGGCSSCTT--------SHHHHHHHHHHHHHHHHH
T ss_pred hhcccccCCEEEEEccccCcCCC--------HHHHHHHHHHHHHHHHHH
Confidence 23567889999999998643321 334467777777777653
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=6.9e-08 Score=83.17 Aligned_cols=108 Identities=21% Similarity=0.227 Sum_probs=65.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhHHH
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEWYK 131 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (489)
|||+||||||+|++||.++++.|. +++|||++... .+.... ....+++++...+...........+
T Consensus 2 yDViIIGgGpaGl~AAi~aar~G~---~v~iie~~~gg-----~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSARKGI---RTGLMGERFGG-----QILDTV------DIENYISVPKTEGQKLAGALKVHVD 67 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTTC---CEEEECSSTTG-----GGGGCC------EECCBTTBSSEEHHHHHHHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHHHcCC---eEEEEEEecCC-----cccccc------cceeccccchhhhHHHHHHHHHHhh
Confidence 799999999999999999999987 69999975321 000000 0011111111100000011123345
Q ss_pred HCCcEEEeCCcEEEEeCCC-----CEEEeCCCeEEeeCcEEecCCCC
Q 011267 132 EKGIEMIYQDPVTSIDIEK-----QTLITNSGKLLKYGSLIVATGCT 173 (489)
Q Consensus 132 ~~~i~~~~~~~V~~id~~~-----~~v~~~~g~~i~yd~lvlATG~~ 173 (489)
+.+.+......+..+.... +.....+..++..+.+++++|..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 114 (184)
T d1fl2a1 68 EYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK 114 (184)
T ss_dssp TSCEEEECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred heeceeeccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence 6677888777777776432 24455667788999999999964
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=98.47 E-value=9.2e-07 Score=82.57 Aligned_cols=89 Identities=24% Similarity=0.391 Sum_probs=64.4
Q ss_pred HHHHhcCcEEEEcCceEEEEEeCCC------CcEEEEEeC---CCc--EEEcCEEEEccCCCCCC---------------
Q 011267 257 QLYQQNGVKFVKVGASIKNLEAGSD------GRVAAVKLE---DGS--TIDADTIVIGIGAKPTV--------------- 310 (489)
Q Consensus 257 ~~l~~~Gv~~~~~~~~v~~i~~~~~------~~v~~v~~~---~g~--~i~aD~vi~a~G~~p~~--------------- 310 (489)
+.+++.+++++. ++.+.++..+++ +++.++... +++ .+.++.||+|+|-....
T Consensus 146 ~~~~~~~v~~~~-~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~ 224 (305)
T d1chua2 146 KALNHPNIRVLE-RTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGI 224 (305)
T ss_dssp HHHHCTTEEEEC-SEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHH
T ss_pred HHHhccCcceec-eeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccE
Confidence 344557888888 888888875433 257776652 343 47899999999853211
Q ss_pred chhhhcCCeec-CCcEEeCCCCCCCCCCeEEeccccc
Q 011267 311 SPFERVGLNSS-VGGIQVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 311 ~~~~~~gl~~~-~g~i~vd~~~~t~~~~Iya~GD~a~ 346 (489)
.++.+.|.+.. -++|.+|++.+|+.|++||+|+++.
T Consensus 225 ~mA~~aGa~l~~m~~iq~~~~g~t~~~g~~a~G~~~~ 261 (305)
T d1chua2 225 AMAWRAGCRVANCGGVMVDDHGRTDVEGLYAIGEVSY 261 (305)
T ss_dssp HHHHHTTCCEECSCEEECCTTCBCSSBTEEECGGGEE
T ss_pred eeccccceeeEecceeEECCcccCCCCCceecccEEE
Confidence 13456777774 4789999999999999999999864
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.46 E-value=1.2e-07 Score=88.74 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=34.0
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+.+||||||||+||++||.+|+++|. +|+|||+.+..
T Consensus 14 ~e~~DVlVIG~G~aGl~aA~~la~~G~---~V~lvEK~~~~ 51 (308)
T d1y0pa2 14 HDTVDVVVVGSGGAGFSAAISATDSGA---KVILIEKEPVI 51 (308)
T ss_dssp SEECSEEEECCSHHHHHHHHHHHHTTC---CEEEECSSSSS
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC---cEEEEecCCCC
Confidence 457899999999999999999999987 69999998653
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.42 E-value=2.9e-07 Score=82.50 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=32.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.|||+||||||||++||.++++.|. +|+|||+.+..
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~~G~---kV~viE~~~~~ 38 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAKFDK---KVMVLDFVTPT 38 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGGGCC---CEEEECCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence 6899999999999999999999987 69999987654
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.38 E-value=1.2e-06 Score=77.04 Aligned_cols=97 Identities=22% Similarity=0.376 Sum_probs=70.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC-c----------------chhhhhCH------HHHHHHHHHHH-hcC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN-H----------------LLQRLFTP------SLAQRYEQLYQ-QNG 263 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~-~----------------~l~~~~~~------~~~~~l~~~l~-~~G 263 (489)
-.|+|||||+.|+|+|..+++.|.++.+|+..- . .+.+..++ .....+++.++ ..+
T Consensus 3 YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~n 82 (230)
T d2cula1 3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 82 (230)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcC
Confidence 358999999999999999999999999997541 0 11111111 12233344443 348
Q ss_pred cEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCC
Q 011267 264 VKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAK 307 (489)
Q Consensus 264 v~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~ 307 (489)
+.++. ..|+++.. +++++.+|++.+|.++.|..||++||.-
T Consensus 83 L~i~q--~~V~dli~-e~~~v~gV~t~~G~~~~AkaVILtTGTF 123 (230)
T d2cula1 83 LHLFQ--ATATGLLL-EGNRVVGVRTWEGPPARGEKVVLAVGSF 123 (230)
T ss_dssp EEEEE--CCEEEEEE-ETTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred HHHHh--ccceeeEe-cccceeeEEeccccEEEEeEEEEccCcc
Confidence 88887 56777764 4678889999999999999999999953
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.38 E-value=1.8e-06 Score=81.58 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=72.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCCcchh---------------------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPENHLLQ--------------------------------------- 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~~~l~--------------------------------------- 244 (489)
.-|+|+|||||++|+-+|..|.+.+ .+|+++++++.+..
T Consensus 3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 82 (335)
T d2gv8a1 3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPL 82 (335)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCccccccccccccccccccccccccc
Confidence 3489999999999999999998766 48999999865410
Q ss_pred ------------------------hhh--CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---Cc--
Q 011267 245 ------------------------RLF--TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---GS-- 293 (489)
Q Consensus 245 ------------------------~~~--~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---g~-- 293 (489)
..+ ..++.+.+....+..+..+++ +++|++++..++.. .|++.+ ++
T Consensus 83 y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~-~t~V~~v~~~~~~w--~Vt~~~~~~~~~~ 159 (335)
T d2gv8a1 83 YRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKL-ATDVLDIEKKDGSW--VVTYKGTKAGSPI 159 (335)
T ss_dssp CTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEEC-SEEEEEEEEETTEE--EEEEEESSTTCCE
T ss_pred chhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccC-ceEEEEEEecCCEE--EEEEEecCCCCeE
Confidence 000 135667777777778888999 99999998764432 344432 22
Q ss_pred -EEEcCEEEEccCCC
Q 011267 294 -TIDADTIVIGIGAK 307 (489)
Q Consensus 294 -~i~aD~vi~a~G~~ 307 (489)
+..+|.||+|+|..
T Consensus 160 ~~~~~d~VI~AtG~~ 174 (335)
T d2gv8a1 160 SKDIFDAVSICNGHY 174 (335)
T ss_dssp EEEEESEEEECCCSS
T ss_pred EEEEeeEEEEccccc
Confidence 45699999999964
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.36 E-value=6.4e-07 Score=79.65 Aligned_cols=127 Identities=18% Similarity=0.190 Sum_probs=80.3
Q ss_pred CCCCCCCCceEeecCHHHHHHHH---Hh---hcCCCcEEEECCCHHHHHHHHHHHhC--------------------C-C
Q 011267 179 EKIGGYLPGVHYIRDVADADALI---SS---LEKAKKVVVVGGGYIGMEVAAAAVGW--------------------K-L 231 (489)
Q Consensus 179 ~~~g~~~~gv~~~~~~~~~~~~~---~~---~~~~~~vvViG~G~~g~e~A~~l~~~--------------------g-~ 231 (489)
.+||.+++|++...++....+-. .. ...+++|+|||+|.+|+++|..|.+. | .
T Consensus 5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~ 84 (225)
T d1cjca1 5 DIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVK 84 (225)
T ss_dssp CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCC
T ss_pred CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCC
Confidence 46788899998764433211000 00 11368999999999999999999873 4 4
Q ss_pred cEEEEccCCcchhhhhCHHHH-----------------------------------HHHHHHH--------------Hhc
Q 011267 232 DTTIIFPENHLLQRLFTPSLA-----------------------------------QRYEQLY--------------QQN 262 (489)
Q Consensus 232 ~V~lv~~~~~~l~~~~~~~~~-----------------------------------~~l~~~l--------------~~~ 262 (489)
+|+++.|+...-..+..+++. +.+.+.+ ...
T Consensus 85 ~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (225)
T d1cjca1 85 TVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASR 164 (225)
T ss_dssp EEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSE
T ss_pred eEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhccccccccccccccc
Confidence 799999886432111111211 1111111 135
Q ss_pred CcEEEEcCceEEEEEeCCCC-cEEEEEeC---------------CC--cEEEcCEEEEccCC
Q 011267 263 GVKFVKVGASIKNLEAGSDG-RVAAVKLE---------------DG--STIDADTIVIGIGA 306 (489)
Q Consensus 263 Gv~~~~~~~~v~~i~~~~~~-~v~~v~~~---------------~g--~~i~aD~vi~a~G~ 306 (489)
++.|++ ....+++..++++ ++..+++. .| .+++||+||.|+|+
T Consensus 165 ~i~~~f-~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 165 AWGLRF-FRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp EEEEEC-SEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred ceEEEe-ecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 688999 9999999876554 56665542 12 25999999999995
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.33 E-value=2.9e-07 Score=86.37 Aligned_cols=36 Identities=25% Similarity=0.360 Sum_probs=32.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+||||||+|+||++||.++++.+. +.+|+|+||..
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~-g~~V~lleK~~ 40 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANP-NAKIALISKVY 40 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCT-TCCEEEEESSC
T ss_pred ecCEEEECccHHHHHHHHHHHHhCC-CCEEEEEECCC
Confidence 5899999999999999999999864 66899999875
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=2.9e-07 Score=81.64 Aligned_cols=35 Identities=26% Similarity=0.517 Sum_probs=32.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.||+|||||||||++||.++++.|. +|+|||++..
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar~G~---kV~vIEk~~~ 37 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAELGA---RAAVVESHKL 37 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCT
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCC---EEEEEeccCC
Confidence 5899999999999999999999987 6999998753
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.31 E-value=4.5e-07 Score=85.43 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=33.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+..||||||+|+||++||.+|+++|. +|+|||+.+.
T Consensus 21 ~et~DVvVIG~G~aGl~aA~~la~~G~---~V~llEk~~~ 57 (322)
T d1d4ca2 21 KETTDVVIIGSGGAGLAAAVSARDAGA---KVILLEKEPI 57 (322)
T ss_dssp CEECSEEEECSSHHHHHHHHHHHTTTC---CEEEECSSSS
T ss_pred CCcceEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 456899999999999999999999987 6999999765
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.30 E-value=1.4e-07 Score=86.30 Aligned_cols=39 Identities=21% Similarity=0.389 Sum_probs=34.3
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..+.||+||||||++|+.||..+++.|. ++++||+.+..
T Consensus 39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~---kv~vve~~~~l 77 (261)
T d1mo9a1 39 DPREYDAIFIGGGAAGRFGSAYLRAMGG---RQLIVDRWPFL 77 (261)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred CCccCCEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCcc
Confidence 3457899999999999999999999986 79999987654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.26 E-value=5.7e-07 Score=80.57 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=31.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+|+||||||||++||.++++.+.+..+|+|||++.
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~ 37 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG 37 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence 589999999999999999999887556899999865
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.23 E-value=4.7e-07 Score=87.29 Aligned_cols=116 Identities=18% Similarity=0.265 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCC---------------CcEEEcCEEEEccCCCCCC--chhhh
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLED---------------GSTIDADTIVIGIGAKPTV--SPFER 315 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~---------------g~~i~aD~vi~a~G~~p~~--~~~~~ 315 (489)
.++.+..++.|+++.. +..+.++...+++.+..+...+ +..+.++..+++.|..... ++++.
T Consensus 145 ~~l~~~Ae~~g~~~~~-~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~ 223 (380)
T d2gmha1 145 SWMGEQAEALGVEVYP-GYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHLAKQLYKK 223 (380)
T ss_dssp HHHHHHHHHTTCEEET-TCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHHHHHHHHH
T ss_pred HHHHHHHhhccceeee-ecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcchHHHHhh
Confidence 3455556777788777 7777777765555554443321 2346688889998876532 12222
Q ss_pred cCCeec---CCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 316 VGLNSS---VGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 316 ~gl~~~---~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
..+... .+|.. .--+...+++..+||+|.+-++..+ +-+..|+..|+.||+.+.
T Consensus 224 ~~l~~~~~~~~G~~--sip~l~~~G~lLVGDAAG~vnP~~g-----~GI~~Am~SG~lAAeai~ 280 (380)
T d2gmha1 224 FDLRANCEPQGGFQ--SIPKLTFPGGLLIGCSPGFMNVPKI-----KGTHTAMKSGTLAAESIF 280 (380)
T ss_dssp TTTTTTSCCCCGGG--GCCCCEETTEEECTTTTCCCBTTTT-----BCHHHHHHHHHHHHHHHH
T ss_pred hhhccccccccccc--cccccccCCeeEEeccccccchhhc-----CCeeeeeccHHHHHHHHH
Confidence 222111 11110 0012345899999999997665443 345567777777776664
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.22 E-value=6.1e-07 Score=84.35 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=33.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+.+||||||+|+||++||+++++.|. +|+|||+.+.
T Consensus 17 ~e~~DVvVIGaG~aGl~AA~~aa~~G~---~V~vlEK~~~ 53 (317)
T d1qo8a2 17 SETTQVLVVGAGSAGFNASLAAKKAGA---NVILVDKAPF 53 (317)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHHTC---CEEEECSSSS
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC---cEEEEeCCCC
Confidence 457899999999999999999999987 6999999864
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.20 E-value=5.3e-07 Score=82.08 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=32.8
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+||+|||||+|||+||+.|+++|++ +|+|+|+++...
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~~G~~--~V~vlE~~~~~G 37 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSEAGIT--DLLILEATDHIG 37 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTTCC--CEEEECSSSSSB
T ss_pred CCEEEECCcHHHHHHHHHHHhCCCC--cEEEEECCCCCC
Confidence 5899999999999999999999863 699999987653
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.19 E-value=5.7e-07 Score=79.84 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=33.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+++|||+||||||||++||.++++.|. +|+|||+...
T Consensus 1 ~~kYDviIIGgGpAGl~aA~~aar~G~---~V~viE~~~~ 37 (229)
T d3lada1 1 SQKFDVIVIGAGPGGYVAAIKSAQLGL---KTALIEKYKG 37 (229)
T ss_dssp CCCCSEEEECCSHHHHHHHHHHHHHTC---CEEEEECCBC
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCC---eEEEEecccC
Confidence 368999999999999999999999987 6999998654
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.19 E-value=1.9e-05 Score=73.53 Aligned_cols=89 Identities=22% Similarity=0.408 Sum_probs=65.2
Q ss_pred HHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe---CCCc--EEEcCEEEEccCCCC-----CC----------chhhh
Q 011267 256 EQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL---EDGS--TIDADTIVIGIGAKP-----TV----------SPFER 315 (489)
Q Consensus 256 ~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~---~~g~--~i~aD~vi~a~G~~p-----~~----------~~~~~ 315 (489)
.+..+..+|+++. ++.++++..+ ++++.++.. .+|+ .+.|+.||+|||--. .+ .++.+
T Consensus 142 ~~~~~~~~v~i~~-~~~v~~Ll~d-~g~v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~ 219 (311)
T d1kf6a2 142 QTSLQFPQIQRFD-EHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALS 219 (311)
T ss_dssp HHHTTCTTEEEEE-TEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred HHHHccCcceeEe-eeEeeeeEec-CCcceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHh
Confidence 3444446899999 9999999854 577776653 4565 468999999999421 11 13455
Q ss_pred cCCee-cCCcEEeCCCCCCCCCCeEEeccccc
Q 011267 316 VGLNS-SVGGIQVDGQFRTRMPGIFAIGDVAA 346 (489)
Q Consensus 316 ~gl~~-~~g~i~vd~~~~t~~~~Iya~GD~a~ 346 (489)
+|.+. +-++|.++++..+..+++|+.++++.
T Consensus 220 aGa~l~dme~iq~~p~~~~~~~~~~~~~~~~~ 251 (311)
T d1kf6a2 220 HGVPLRDMGGIETDQNCETRIKGLFAVGECSS 251 (311)
T ss_dssp TTCCEESCCEEECCTTSBCSSBTEEECGGGEE
T ss_pred cccceeecccccccccchhcccCCCcCcceee
Confidence 67766 34689999999899999999999875
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.15 E-value=1.8e-06 Score=79.30 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=33.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAYAP 90 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~~~ 90 (489)
..+||+|||||+|||+||.+|++. |. +|+|+|+++...
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~~G~---~V~vlE~~~~~G 70 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKNPNV---QVAIIEQSVSPG 70 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTSTTS---CEEEEESSSSCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHccCC---eEEEEecCCCCC
Confidence 468999999999999999999874 76 799999987653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.14 E-value=1.7e-06 Score=78.17 Aligned_cols=37 Identities=16% Similarity=0.355 Sum_probs=33.2
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+.+||||||||++|+++|+.|+++|+ +|+|||++.
T Consensus 3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~---~V~vier~~ 39 (268)
T d1c0pa1 3 MHSQKRVVVLGSGVIGLSSALILARKGY---SVHILARDL 39 (268)
T ss_dssp CCCSCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESSC
T ss_pred CCCCCcEEEECccHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence 3456799999999999999999999987 799999975
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.13 E-value=4.9e-06 Score=75.32 Aligned_cols=101 Identities=18% Similarity=0.293 Sum_probs=72.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh-----hhCHHHHHH--------------------------
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR-----LFTPSLAQR-------------------------- 254 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~-----~~~~~~~~~-------------------------- 254 (489)
..+||+|||+|+.|+-+|..|++.|.+|+++++.+.+... .+.+.....
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 82 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG 82 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCC
Confidence 4679999999999999999999999999999986543211 011111111
Q ss_pred ------------------HHH-HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 255 ------------------YEQ-LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 255 ------------------l~~-~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+.. .-...++.+++ +..++++...+++ + .++++||+++.+|.+|.|.|....
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~-v-~v~~~dG~~~~~d~~v~adG~~s~ 153 (265)
T d2voua1 83 ERVGSVPADWRFTSYDSIYGGLYELFGPERYHT-SKCLVGLSQDSET-V-QMRFSDGTKAEANWVIGADGGASV 153 (265)
T ss_dssp CEEEEEECCCCEEEHHHHHHHHHHHHCSTTEET-TCCEEEEEECSSC-E-EEEETTSCEEEESEEEECCCTTCH
T ss_pred ceecccccccccchhHHHHHHHHHhcccceeec-CcEEEEEEeeCCc-e-EEEECCCCEEEEEEEecccccccc
Confidence 111 11234677888 9999999865443 3 588999999999999999997653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=9.8e-07 Score=83.45 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=35.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
.++.+|||||||+|||+||+.|++.|+ +|+|+|+++..+
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~---~V~VlEa~~r~G 41 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGM---DVTLLEARDRVG 41 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTC---EEEEECSSSSSB
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence 466789999999999999999999987 799999988764
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=2.6e-05 Score=73.21 Aligned_cols=121 Identities=20% Similarity=0.238 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE---EeCCCc--EEEcCEEEEccCCCCC-----C--c--------h
Q 011267 253 QRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV---KLEDGS--TIDADTIVIGIGAKPT-----V--S--------P 312 (489)
Q Consensus 253 ~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v---~~~~g~--~i~aD~vi~a~G~~p~-----~--~--------~ 312 (489)
..+.+..++.+++++. +..+.++...+++.+..+ ...+|+ .+.++.||+|+|.-.. + . +
T Consensus 147 ~~L~~~~~~~~v~~~~-~~~~~~l~~~~~~~~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~ 225 (330)
T d1neka2 147 HTLYQQNLKNHTTIFS-EWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGM 225 (330)
T ss_dssp HHHHHHHHHTTCEEEC-SEEEEEEEECTTSCEEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHH
T ss_pred HHHHHHHHhcCCeEEE-EEEEEEeeeeccccceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHH
Confidence 3444555667888888 888888766556654432 234564 4789999999995321 1 0 2
Q ss_pred hhhcCCeec--CCcEEeCC---------C-CCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHH
Q 011267 313 FERVGLNSS--VGGIQVDG---------Q-FRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKAL 375 (489)
Q Consensus 313 ~~~~gl~~~--~g~i~vd~---------~-~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l 375 (489)
....|.... .++++.+. . .++-.|++||+|+|+.......++.. ..+...+...|+.+++.+
T Consensus 226 a~~aGa~l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~-~nsl~~~~v~g~~ag~~~ 299 (330)
T d1neka2 226 AIRAGVPVQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLG-GNSLLDLVVFGRAAGLHL 299 (330)
T ss_dssp HHTTTCCEESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCT-THHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccccccccccccccceeecccCCCceecccccccCcccccccccccccc-cccHHHHHHHHHHHHHHH
Confidence 233444331 24444332 1 11246899999999864322222322 223444555555554444
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=9.4e-07 Score=82.24 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=34.6
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
++||||||||++|++||+.|++.|. +|+|+|++++.+.
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~~g~---~V~iiEk~~~iGG 38 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKKLNK---KVLVIEKRNHIGG 38 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGGGTC---CEEEECSSSSSSG
T ss_pred CccEEEECCcHHHHHHHHHHHhCCC---cEEEEECCCCccc
Confidence 5799999999999999999999886 7999999988754
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.08 E-value=1.4e-06 Score=76.92 Aligned_cols=37 Identities=24% Similarity=0.399 Sum_probs=33.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..|||+||||||||++||..+++.|. +|+|||+++..
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~~G~---kV~vie~~~~~ 38 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQLGF---KTTCIEKRGAL 38 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHHTC---CEEEEECSSSS
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCC
Confidence 57999999999999999999999987 69999987654
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.08 E-value=7.6e-07 Score=79.40 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=33.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.++|||+||||||||++||.++++.|. +|+|||+.+..
T Consensus 3 ~~~yDviVIG~GpAGl~aA~~aa~~G~---kV~lie~~~~~ 40 (233)
T d1v59a1 3 NKSHDVVIIGGGPAGYVAAIKAAQLGF---NTACVEKRGKL 40 (233)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSSS
T ss_pred CcccCEEEECCCHHHHHHHHHHHHCCC---cEEEEEecCCc
Confidence 357999999999999999999999987 79999987653
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.07 E-value=1.1e-06 Score=81.59 Aligned_cols=36 Identities=22% Similarity=0.367 Sum_probs=33.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
++|+|||||+|||+||++|++.|+ +|+|+|+++...
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~---~V~vlE~~~~~G 37 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGL---NVTVFEAEGKAG 37 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSC---EEEEECSSSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC---CEEEEeCCCCCc
Confidence 689999999999999999999987 799999987754
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.06 E-value=1.7e-06 Score=74.78 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=33.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+++|+|||||++||+||.+|+++|++ +|+|+|+.+..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~--~V~v~E~~~~~ 40 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYS--DITIFEKQEYV 40 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCC--CEEEEESSSSC
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCC--eEEEEEecCcc
Confidence 467899999999999999999999973 59999998764
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.01 E-value=1.6e-05 Score=69.91 Aligned_cols=63 Identities=19% Similarity=0.206 Sum_probs=42.8
Q ss_pred CCCCCCCCceEeecCHHHHHHHHHh------hcCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-
Q 011267 179 EKIGGYLPGVHYIRDVADADALISS------LEKAKKVVVVGGGYIGMEVAAAAV--------------------GWKL- 231 (489)
Q Consensus 179 ~~~g~~~~gv~~~~~~~~~~~~~~~------~~~~~~vvViG~G~~g~e~A~~l~--------------------~~g~- 231 (489)
.+||.+++|++...++...-+-... ...+++|+|||+|.+|+++|..+. +.+.
T Consensus 5 ~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~ 84 (216)
T d1lqta1 5 NIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQ 84 (216)
T ss_dssp CCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCC
T ss_pred CCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCc
Confidence 4578889999876433221110000 013689999999999999999876 4555
Q ss_pred cEEEEccCCc
Q 011267 232 DTTIIFPENH 241 (489)
Q Consensus 232 ~V~lv~~~~~ 241 (489)
+|+++.|+..
T Consensus 85 ~V~iv~RRg~ 94 (216)
T d1lqta1 85 EVVIVGRRGP 94 (216)
T ss_dssp EEEEECSSCG
T ss_pred eEEEEEECCh
Confidence 6999988743
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=97.99 E-value=1.9e-06 Score=76.65 Aligned_cols=38 Identities=24% Similarity=0.422 Sum_probs=33.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
...|||+|||||||||+||.+|++.|. +|+|||+.+..
T Consensus 4 ~~dyDviIIG~GPaGlsaA~~aa~~G~---~V~viE~~~~~ 41 (229)
T d1ojta1 4 DAEYDVVVLGGGPGGYSAAFAAADEGL---KVAIVERYKTL 41 (229)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSSCS
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCC---eEEEEeccCCC
Confidence 356999999999999999999999987 79999987653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.95 E-value=2.7e-06 Score=79.60 Aligned_cols=38 Identities=21% Similarity=0.398 Sum_probs=34.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPY 91 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y 91 (489)
+++|+|||||++||+||+.|++.|+ +|+|+|++++.+.
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~---~V~viEk~~~iGG 39 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGH---QVHIIDQRDHIGG 39 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTC---EEEEEESSSSSSG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCC---CEEEEECCCCCcC
Confidence 5789999999999999999999886 7999999998764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.95 E-value=7.5e-06 Score=68.04 Aligned_cols=94 Identities=16% Similarity=0.052 Sum_probs=61.0
Q ss_pred CCcEEEE--cCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChh
Q 011267 51 NREFVIV--GGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPE 128 (489)
Q Consensus 51 ~~~vvII--GgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (489)
...+||| |||+.|+.+|..|+++|. +|||+++.+..... . .+ . . ......
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~---~Vtlv~~~~~~~~~-------~-~~-~--~--------------~~~~~~ 90 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGH---EVTIVSGVHLANYM-------H-FT-L--E--------------YPNMMR 90 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTC---EEEEEESSCTTTHH-------H-HT-T--C--------------HHHHHH
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCC---eEEEEecCCccccc-------c-ch-h--H--------------HHHHHH
Confidence 4456665 999999999999999986 79999987643211 1 00 0 0 122356
Q ss_pred HHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCC
Q 011267 129 WYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTA 174 (489)
Q Consensus 129 ~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~ 174 (489)
.+.+.|++++.++++.+++.+...+.. ......+.++.++|..|
T Consensus 91 ~l~~~GV~i~~~~~v~~i~~~~v~l~~--~~~~~~~~v~~~~g~~~ 134 (156)
T d1djqa2 91 RLHELHVEELGDHFCSRIEPGRMEIYN--IWGDGSKRTYRGPGVSP 134 (156)
T ss_dssp HHHHTTCEEEETEEEEEEETTEEEEEE--TTCSCSCCCCCCTTSCS
T ss_pred HHhhccceEEeccEEEEecCcceEEEe--eeccccceeeeeeEEEe
Confidence 677899999999999999876544432 22223344444444443
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.93 E-value=2.1e-05 Score=65.64 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=35.7
Q ss_pred hhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCe-EEeeCcEEecCCC
Q 011267 127 PEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGK-LLKYGSLIVATGC 172 (489)
Q Consensus 127 ~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~-~i~yd~lvlATG~ 172 (489)
...+++.+++++.++.+..++.+...+...+.+ .+++|.+|+|+|.
T Consensus 115 ~~~~~~~gv~~~~~~~v~~i~~~gv~~~~~g~e~~i~aD~Vv~A~Gq 161 (162)
T d1ps9a2 115 RTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQ 161 (162)
T ss_dssp HHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCE
T ss_pred HHHHhhCCeEEEeeeEEEEEcCCCCEEecCCeEEEEECCEEEECCCC
Confidence 345677899999999999999776666554332 4899999999993
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.91 E-value=4.5e-06 Score=74.38 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+++|||+||||||||++||.++++.+.+ .|+|+|+...
T Consensus 1 ~~~YDviIIG~GpaGl~aA~~aa~~g~k--~V~iie~~~~ 38 (238)
T d1aoga1 1 SKIFDLVVIGAGSGGLEAAWNAATLYKK--RVAVIDVQMV 38 (238)
T ss_dssp CCSBSEEEECCSHHHHHHHHHHHHTSCC--CEEEEESCSS
T ss_pred CCccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEeecc
Confidence 3689999999999999999999998753 6899987644
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.90 E-value=0.00013 Score=69.78 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=31.2
Q ss_pred CcEEEECCCHHHHHHHHHHHh------CCCcEEEEccCCcc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG------WKLDTTIIFPENHL 242 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~------~g~~V~lv~~~~~~ 242 (489)
-.|+|||||+.|+-+|..|++ .|.+|.++++...+
T Consensus 33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p 73 (380)
T d2gmha1 33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 73 (380)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence 479999999999999999987 79999999988544
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.88 E-value=3.9e-06 Score=73.98 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+|||||||||||++||.++++.|. +|+|||++.
T Consensus 2 ~~~DviVIG~GpaGl~aA~~aar~G~---kV~vIEk~~ 36 (223)
T d1ebda1 2 IETETLVVGAGPGGYVAAIRAAQLGQ---KVTIVEKGN 36 (223)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTTC---CEEEEESSC
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCC---EEEEEecCC
Confidence 35899999999999999999999986 699999875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.88 E-value=5.2e-05 Score=68.84 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=92.4
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCCcchhh----hhCHHH-------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPENHLLQR----LFTPSL------------------------------- 251 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~~~l~~----~~~~~~------------------------------- 251 (489)
-+|+|||||+.|+-+|..|++.|. +|+++++.+.+... .+.+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 81 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA 81 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence 379999999999999999999996 89999987543110 000100
Q ss_pred -------------------------HHHHHH--HHHhcCcEEEEcCceEEEEEeCCCCcEEEEEeCCC----cEEEcCEE
Q 011267 252 -------------------------AQRYEQ--LYQQNGVKFVKVGASIKNLEAGSDGRVAAVKLEDG----STIDADTI 300 (489)
Q Consensus 252 -------------------------~~~l~~--~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~~~g----~~i~aD~v 300 (489)
...+.. .....++.+.+ +++++.+...+ +.+ .+.+.+| +++.+|++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~-~~v-~v~~~~g~~~~~~~~ad~v 158 (288)
T d3c96a1 82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRT-GLGVERIEERD-GRV-LIGARDGHGKPQALGADVL 158 (288)
T ss_dssp EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEE-SEEEEEEEEET-TEE-EEEEEETTSCEEEEEESEE
T ss_pred EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeec-CcEEEEeeecC-CcE-EEEEEcCCCCeEEEeecee
Confidence 011111 12235778888 89999887543 333 4566554 47999999
Q ss_pred EEccCCCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCCccCCcccccccHHHHHHHHHHHHHHHh
Q 011267 301 VIGIGAKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPLKMYDRTARVEHVDHARQSAQHCIKALL 376 (489)
Q Consensus 301 i~a~G~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~~~~~~~~~~~~~~~A~~~g~~~a~~l~ 376 (489)
|.|-|....+.- ....... ............++..+||.+....+..|. ....|..-+...+..|.
T Consensus 159 i~ADG~~S~vr~--~~~~~~~---~~~~~~~~~~~~~~~~~gda~h~~~p~~g~-----G~~~ai~d~~~l~~~l~ 224 (288)
T d3c96a1 159 VGADGIHSAVRA--HLHPDQR---PLRDPLPHWGRGRITLLGDAAHLMYPMGAN-----GASQAILDGIELAAALA 224 (288)
T ss_dssp EECCCTTCHHHH--HHCTTCC---CCCCCCSCCCBTTEEECTHHHHCCCSSTTC-----THHHHHHHHHHHHHHHH
T ss_pred eccCCccceeee--eeccccc---cccccccccccCcceecccccceeCCcccc-----chhhhhhhHHHHHHHHh
Confidence 999998653211 1110000 000111223556789999999755444333 12345555555555554
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.85 E-value=5.5e-06 Score=76.38 Aligned_cols=35 Identities=14% Similarity=0.328 Sum_probs=32.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+++||+||||||+|+++|..|+++|+ +|+|||+.+
T Consensus 1 mk~~V~IvGaGp~Gl~~A~~L~~~G~---~v~vlE~~~ 35 (292)
T d1k0ia1 1 MKTQVAIIGAGPSGLLLGQLLHKAGI---DNVILERQT 35 (292)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHHHTC---CEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCC---CEEEEeCCC
Confidence 35699999999999999999999987 799999875
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.84 E-value=4.6e-05 Score=69.88 Aligned_cols=126 Identities=17% Similarity=0.189 Sum_probs=81.0
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh------hh----------------------------------
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR------LF---------------------------------- 247 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~------~~---------------------------------- 247 (489)
.+|+|||+|+.|+-+|..|++.|.+|+++++.+..... .+
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~~ 82 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ 82 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEeccc
Confidence 37999999999999999999999999999987421100 00
Q ss_pred -------------------CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe-CCCc--EEEcCEEEEccC
Q 011267 248 -------------------TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL-EDGS--TIDADTIVIGIG 305 (489)
Q Consensus 248 -------------------~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~-~~g~--~i~aD~vi~a~G 305 (489)
-..+.+.+.+.+++.+..++. +.........+++.+. |.+ .+|+ ++.||+||-|.|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-v~~~~~g~~~~i~a~~vVgADG 160 (292)
T d1k0ia1 83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVY-QAAEVRLHDLQGERPY-VTFERDGERLRLDCDYIAGCDG 160 (292)
T ss_dssp EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEES-SCEEEEEECTTSSSCE-EEEEETTEEEEEECSEEEECCC
T ss_pred ccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEE-cceeeeeeeeccCceE-EEEecCCcEEEEEeCEEEECCC
Confidence 023445566667777777777 6655555444444443 443 4554 578999999999
Q ss_pred CCCCCchhhhcCCeecCCcEEeCCCCCCCCCCeEEeccccccCC
Q 011267 306 AKPTVSPFERVGLNSSVGGIQVDGQFRTRMPGIFAIGDVAAFPL 349 (489)
Q Consensus 306 ~~p~~~~~~~~gl~~~~g~i~vd~~~~t~~~~Iya~GD~a~~~~ 349 (489)
.+.... +..+... ......+.+||++....
T Consensus 161 ~~S~vR--~~i~~~~------------~~~~~~~~~~~~~~~~~ 190 (292)
T d1k0ia1 161 FHGISR--QSIPAER------------MQHGRLFLAGDAAHIVP 190 (292)
T ss_dssp TTCSTG--GGSCGGG------------SEETTEEECGGGTEECC
T ss_pred CCCccc--ceeeecc------------ccccccccceeeeeecC
Confidence 876422 1111111 12356778888876433
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=97.81 E-value=4.8e-06 Score=78.48 Aligned_cols=36 Identities=22% Similarity=0.278 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+||||||||+|||+||.++++.|. +|+|||+.+.
T Consensus 4 ~~~DVvVIG~G~AGl~AAl~aa~~G~---~V~liEK~~~ 39 (336)
T d2bs2a2 4 QYCDSLVIGGGLAGLRAAVATQQKGL---STIVLSLIPV 39 (336)
T ss_dssp EECSEEEECCSHHHHHHHHHHHTTTC---CEEEECSSCG
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCC---CEEEEecCCC
Confidence 45899999999999999999999987 6999999754
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.80 E-value=5.8e-06 Score=73.96 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=33.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
+++||||||||||||++||..+++.|.+ .|.|+|++...
T Consensus 1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k--~V~vie~~~~~ 39 (240)
T d1feca1 1 SRAYDLVVIGAGSGGLEAGWNAASLHKK--RVAVIDLQKHH 39 (240)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHHHHCC--CEEEEESCSSS
T ss_pred CCccCEEEECCCHHHHHHHHHHHHcCCC--EEEEEEEeccC
Confidence 3679999999999999999999998753 69999987653
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.78 E-value=4.6e-05 Score=58.64 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=56.9
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcE
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRV 284 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v 284 (489)
..+++|+|||+|.+|+++|..|++...+++++.+++.... ...++... ..+.++... ++
T Consensus 30 f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~~---------------~~~~~~~~---~~i~~~~~~--~~- 88 (107)
T d2gv8a2 30 FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDI---------------QNESLQQV---PEITKFDPT--TR- 88 (107)
T ss_dssp GTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC---------------BCSSEEEE---CCEEEEETT--TT-
T ss_pred cCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCcccc---------------ccccceec---CCeeEEecC--CC-
Confidence 4689999999999999999999999999888777654322 11233332 356777633 33
Q ss_pred EEEEeCCCcEEE-cCEEEEc
Q 011267 285 AAVKLEDGSTID-ADTIVIG 303 (489)
Q Consensus 285 ~~v~~~~g~~i~-aD~vi~a 303 (489)
.+.+.||+++. .|.||+|
T Consensus 89 -~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 89 -EIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp -EEEETTTEEECCCSEEEEC
T ss_pred -EEEEcCCCEEeCCCEEEEC
Confidence 48899998887 6999987
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.77 E-value=1.2e-05 Score=71.32 Aligned_cols=89 Identities=16% Similarity=0.223 Sum_probs=63.0
Q ss_pred cEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcchh---------hhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLE 277 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~l~---------~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~ 277 (489)
+|+|||+|+.|+.+|..|++. +.+|+++++.+.+.. ......+.......+++.|++++. ++.|..
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-- 79 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYG-NVEVGR-- 79 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEB-SCCBTT--
T ss_pred eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEe-eEEeCc--
Confidence 799999999999999999765 679999999976521 112335556677788899999998 776511
Q ss_pred eCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 278 AGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 278 ~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
+ +.+.+ -.-.+|.+++|+|..+.
T Consensus 80 ---~-----~~~~~-l~~~~d~v~~a~Ga~~~ 102 (230)
T d1cjca2 80 ---D-----VTVQE-LQDAYHAVVLSYGAEDK 102 (230)
T ss_dssp ---T-----BCHHH-HHHHSSEEEECCCCCEE
T ss_pred ---c-----ccHHH-HHhhhceEEEEeecccc
Confidence 1 00000 01247999999998764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.74 E-value=6.3e-06 Score=76.94 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=33.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
...+||+||||||||++||++|+++.. ..+|+|+|+++.+.
T Consensus 48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~-~~~~~~~~~~~~~~ 88 (311)
T d2gjca1 48 FAVSDVIIVGAGSSGLSAAYVIAKNRP-DLKVCIIESSVAPG 88 (311)
T ss_dssp TTEESEEEECCSHHHHHHHHHHHHHCT-TSCEEEECSSSSCC
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHhCC-CCeEEEEEcCCCCc
Confidence 456899999999999999999997632 34799999987654
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.73 E-value=1.2e-05 Score=73.31 Aligned_cols=36 Identities=14% Similarity=0.291 Sum_probs=32.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.||+|||||+||+++|..|++.|.. +|+|+|+.+..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~~Gi~--~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQAGIG--KVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCS--EEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCC--eEEEEeCCCCC
Confidence 5899999999999999999999852 79999998764
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.64 E-value=1.5e-05 Score=75.91 Aligned_cols=88 Identities=15% Similarity=0.258 Sum_probs=57.3
Q ss_pred HhcCcEEEEcCceEEEEEeCCC-CcEEEEEe---CCCc--EEEcCEEEEccCCCCCCchhhhcCCee-------------
Q 011267 260 QQNGVKFVKVGASIKNLEAGSD-GRVAAVKL---EDGS--TIDADTIVIGIGAKPTVSPFERVGLNS------------- 320 (489)
Q Consensus 260 ~~~Gv~~~~~~~~v~~i~~~~~-~~v~~v~~---~~g~--~i~aD~vi~a~G~~p~~~~~~~~gl~~------------- 320 (489)
.+.|+++++ ++.|++|..+++ +++++|+. .+|+ ++.++.||++.|..-...+|..+++..
T Consensus 229 ~~~~~~l~~-~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~ 307 (379)
T d2f5va1 229 PEERFNLFP-AVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELL 307 (379)
T ss_dssp EEEEEEEEC-SEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSS
T ss_pred cCCCCEEec-CCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCcccc
Confidence 345789999 999999986543 46777775 3454 578999999999643323333322210
Q ss_pred ----------cC--CcEEeCCCCCC-CCCCeEEeccccccCC
Q 011267 321 ----------SV--GGIQVDGQFRT-RMPGIFAIGDVAAFPL 349 (489)
Q Consensus 321 ----------~~--g~i~vd~~~~t-~~~~Iya~GD~a~~~~ 349 (489)
++ ..=+||+++++ +++|+|+++ +.-+|.
T Consensus 308 ~~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d-~sv~p~ 348 (379)
T d2f5va1 308 PSLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGG-CGNIPT 348 (379)
T ss_dssp TTTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECS-GGGCCS
T ss_pred cccceeecccCCCCCCccCCCCCcccccCCEEEeC-CcccCC
Confidence 00 11268888998 789999855 444544
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.64 E-value=1.1e-05 Score=76.43 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=32.5
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHH-----cCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVE-----HGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~-----~g~~~~~V~li~~~~~~ 89 (489)
.+.|||+||||||+|+++|..|++ .|+ +|+|+|+.+..
T Consensus 5 ~~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~---~v~vlEr~~~~ 47 (360)
T d1pn0a1 5 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDL---KVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHHHHHSTTC---CEEEECSSSSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHhcccccCCC---cEEEEcCCCCC
Confidence 456999999999999999999964 565 79999998754
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.63 E-value=3.4e-06 Score=75.28 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=35.1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
...++|+|||+|+.|+.+|..|+++|.+|+++++.+.+
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 35789999999999999999999999999999988765
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=1.1e-05 Score=75.81 Aligned_cols=37 Identities=24% Similarity=0.261 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+++||+|||+|+|||+||.+++++|. +|+|+|+.+.
T Consensus 5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~---~V~lleK~~~ 41 (330)
T d1neka2 5 VREFDAVVIGAGGAGMRAALQISQSGQ---TCALLSKVFP 41 (330)
T ss_dssp EEEESCEEECCSHHHHHHHHHHHHTTC---CCEEECSSCG
T ss_pred cccCCEEEECcCHHHHHHHHHHHHcCC---eEEEEeCCCC
Confidence 357899999999999999999999986 6999999753
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.52 E-value=0.00022 Score=58.46 Aligned_cols=36 Identities=19% Similarity=0.346 Sum_probs=30.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+|||||||.+|+-||..+.++|.+ .|+++.+.+
T Consensus 44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~--~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGAGDTAFDCATSALRCGAR--RVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHTTCS--EEEEECSSC
T ss_pred CCCEEEEECCChhHHHHHHHHHHcCCc--ceeEEEeCC
Confidence 456899999999999999999999753 688886654
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.51 E-value=0.0001 Score=64.99 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=31.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..+|+|+|||+|.+|+++|..+.+.+.+++++.+..
T Consensus 30 ~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~ 65 (235)
T d1w4xa2 30 FSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTP 65 (235)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSC
T ss_pred CCCCEEEEECCCccHHHHHHHHHhhhcccccccccc
Confidence 368999999999999999999999998887776553
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=3.2e-05 Score=71.71 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=31.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+.+||||||+|+||++||.++++.+ +|+|||+.+.
T Consensus 5 ~~~~DVvVVG~G~AGl~AA~~a~~~g----~V~llEK~~~ 40 (305)
T d1chua2 5 EHSCDVLIIGSGAAGLSLALRLADQH----QVIVLSKGPV 40 (305)
T ss_dssp SEECSEEEECCSHHHHHHHHHHTTTS----CEEEECSSCT
T ss_pred cccCCEEEECccHHHHHHHHHhhcCC----CEEEEECCCC
Confidence 35699999999999999999987754 5999999764
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.35 E-value=4.2e-05 Score=66.87 Aligned_cols=127 Identities=27% Similarity=0.412 Sum_probs=94.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCC--------
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGS-------- 120 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------- 120 (489)
++++++||||||++|+.+|.+|++.++ +.+|++|+++++.||+||+|++.++............+....+.
T Consensus 2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~-~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (213)
T d1m6ia1 2 PSHVPFLLIGGGTAAFAAARSIRARDP-GARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQP 80 (213)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHST-TCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSC
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCC-CCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCC
Confidence 356789999999999999999999987 78999999999999999999986654321110000000000000
Q ss_pred ---CCCCCChhHHHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEeeCcEEecCCCCCCC
Q 011267 121 ---GGERQTPEWYKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLKYGSLIVATGCTASR 176 (489)
Q Consensus 121 ---~~~~~~~~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~yd~lvlATG~~~~~ 176 (489)
.........+++.+++++++++|++||.+.++|++++|+++.||+||+|||+.|..
T Consensus 81 ~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~~ 139 (213)
T d1m6ia1 81 PSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEPN 139 (213)
T ss_dssp GGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEEC
T ss_pred hhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecch
Confidence 00111223446789999999999999999999999999999999999999987653
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.33 E-value=7.2e-05 Score=70.69 Aligned_cols=39 Identities=23% Similarity=0.268 Sum_probs=31.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCC-CCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGM-ADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~-~~~~V~li~~~~~ 88 (489)
..+||||||+|+||++||.++++.+. +..+|+|||+.+.
T Consensus 20 ~e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~ 59 (356)
T d1jnra2 20 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV 59 (356)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred EecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCC
Confidence 36899999999999999999986321 1348999999764
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.28 E-value=0.0013 Score=61.90 Aligned_cols=31 Identities=32% Similarity=0.382 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.++|||+|..|+-+|..|++.|.+|.++|++
T Consensus 6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG 36 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIG 36 (379)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHhhCCCeEEEEecC
Confidence 5899999999999999999999999999975
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.23 E-value=0.00011 Score=69.88 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=33.2
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+||||||+|++|+.+|.+|.+.|. +|+|+|+...
T Consensus 5 ~~~~dvIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~ 41 (370)
T d3coxa1 5 GDRVPALVIGSGYGGAVAALRLTQAGI---PTQIVEMGRS 41 (370)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCC---eEEEEeCCCC
Confidence 357899999999999999999999987 7999999754
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.19 E-value=0.00014 Score=67.32 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=31.3
Q ss_pred CCcEEEECCCHHHHHHHHHHHhC--CCcEEEEccCCcc
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGW--KLDTTIIFPENHL 242 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~--g~~V~lv~~~~~~ 242 (489)
...|+|||+|+.|+.+|..|+++ |.+|+++++.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence 46799999999999999999864 8999999988643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.18 E-value=0.0002 Score=67.89 Aligned_cols=34 Identities=21% Similarity=0.290 Sum_probs=31.1
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.||||||+|++|+.+|.+|++.|+ +|+|||+...
T Consensus 3 v~VIVVGsG~aG~v~A~rLaeaG~---~VlvLEaG~~ 36 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGEAGV---QTLMLEMGQL 36 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC---CEEEEESSCC
T ss_pred CeEEEeCcCHHHHHHHHHHHHCcC---eEEEEecCCC
Confidence 389999999999999999999987 6999999754
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.16 E-value=0.00017 Score=68.40 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=32.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.||+||||+|+||..+|.+|.+.|. +|+|||+.+.
T Consensus 1 t~YD~IIVGsG~aG~v~A~rLae~g~---~VlvLEaG~~ 36 (360)
T d1kdga1 1 TPYDYIIVGAGPGGIIAADRLSEAGK---KVLLLERGGP 36 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHTTC---CEEEECSSCC
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC---eEEEEEccCC
Confidence 36899999999999999999999876 7999999864
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=97.11 E-value=0.00023 Score=68.21 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=33.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.+.||+||||||+||...|.+|.+.+ +.+|+|||+.+..
T Consensus 22 ~~tyD~IIVGsG~aG~vlA~rLae~~--~~~VLlLEaG~~~ 60 (391)
T d1gpea1 22 GKTYDYIIAGGGLTGLTVAAKLTENP--KIKVLVIEKGFYE 60 (391)
T ss_dssp TCEEEEEEECCSHHHHHHHHHHHTST--TCCEEEEESSCCC
T ss_pred CCeeeEEEECcCHHHHHHHHHHHHCC--CCeEEEEcCCCCC
Confidence 35699999999999999999999976 3489999999753
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.11 E-value=0.00078 Score=53.07 Aligned_cols=92 Identities=17% Similarity=0.217 Sum_probs=62.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+.++|+|||+|-+++-.|..|.+... +|++|-+.+.+.-+ + . + ..+..+.
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~~a~---~V~li~r~~~~~~~-----~-~----------~-----------~~~~~~~ 75 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSNIAS---EVHLIHRRDGFRAE-----K-I----------L-----------IKRLMDK 75 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTTTSS---EEEEECSSSSCCCC-----H-H----------H-----------HHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCC---cEEEEeecccccch-----h-H----------H-----------HHHHHHh
Confidence 56899999999999999999998753 79999776531000 0 0 0 0111222
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC---EEEeCCC------eEEeeCcEEecCC
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ---TLITNSG------KLLKYGSLIVATG 171 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~---~v~~~~g------~~i~yd~lvlATG 171 (489)
....++.++.++.+..+.-+.. .|++.+. ++++.|.|+++.|
T Consensus 76 ~~~~~i~~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG 126 (126)
T d1trba2 76 VENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG 126 (126)
T ss_dssp HHTSSEEEECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred hcccceeEecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence 3456888998888988887654 3444432 4588999999887
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.06 E-value=0.014 Score=54.16 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=27.3
Q ss_pred CcEEEECCCHHHHHHHHHHHh----CCCcEEEEccC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVG----WKLDTTIIFPE 239 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~----~g~~V~lv~~~ 239 (489)
..|+|||+|+.|+-+|..+++ .|.+|.++++.
T Consensus 22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~ 57 (356)
T d1jnra2 22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 57 (356)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCC
Confidence 469999999999888887764 69999999875
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=97.06 E-value=0.00017 Score=69.01 Aligned_cols=39 Identities=18% Similarity=0.401 Sum_probs=33.5
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
..+.+|+||||||.||+..|.+|.+.+ +.+|+|||+.+.
T Consensus 14 ~~~tyD~IIVGsG~aG~vlA~rLse~~--~~~VLvLEaG~~ 52 (385)
T d1cf3a1 14 SGRTVDYIIAGGGLTGLTTAARLTENP--NISVLVIESGSY 52 (385)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHTTST--TCCEEEEESSCC
T ss_pred cCCeEEEEEECcCHHHHHHHHHHHHCC--CCeEEEECCCCC
Confidence 345699999999999999999999875 348999999865
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.02 E-value=0.00012 Score=64.77 Aligned_cols=35 Identities=14% Similarity=0.073 Sum_probs=28.0
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCC---CcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMAD---GRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~---~~V~li~~~~ 87 (489)
+|+|||||++|+++|++|+++|++- .++++++++.
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~ 39 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF 39 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence 6999999999999999999998721 2466666553
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.97 E-value=0.00082 Score=52.93 Aligned_cols=88 Identities=16% Similarity=0.248 Sum_probs=61.7
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||+|.+++-.|..|.+... +|+||.+.+.+ .. . ....+.
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~~a~---~V~li~r~~~~--~~---~--------------------------~~~~~~ 74 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAGIVE---HVTLLEFAPEM--KA---D--------------------------QVLQDK 74 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHTTBS---EEEEECSSSSC--CS---C--------------------------HHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHhhhccCC---ceEEEeccccc--cc---c--------------------------cccccc
Confidence 57899999999999999999998743 79999776431 00 0 001122
Q ss_pred H-HHCCcEEEeCCcEEEEeCCCC---EEEeC---CC--eEEeeCcEEecCC
Q 011267 130 Y-KEKGIEMIYQDPVTSIDIEKQ---TLITN---SG--KLLKYGSLIVATG 171 (489)
Q Consensus 130 ~-~~~~i~~~~~~~V~~id~~~~---~v~~~---~g--~~i~yd~lvlATG 171 (489)
+ ...+|++++++++..+.-+.. .+.+. +| .+++.|.++++.|
T Consensus 75 ~~~~~~I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG 125 (126)
T d1fl2a2 75 LRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG 125 (126)
T ss_dssp HHTCTTEEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred cccccceeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence 2 235799999999998886533 23443 23 3689999999987
|
| >d1v59a3 d.87.1.1 (A:356-478) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.89 E-value=0.00042 Score=54.38 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=50.2
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA 487 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~~~~~ 487 (489)
.+.++.++ +++|+|+.+++.+++++..... +++++.+++ . ..++.|||+.|+++.|++++.+++
T Consensus 52 G~~Kli~d~~~~~ilGa~ivG~~A~elI~~~alai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~~~~~~ 120 (123)
T d1v59a3 52 GFVKILIDSKTERILGAHIIGPNAGEMIAEAGLALEYGASAEDVARVCHAHPTLSEAFKEANMAAYDKA 120 (123)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCTTHHHHHHHHHHHSCC
T ss_pred EEEEEEEECCCCEEEEEEEEchHHHHHHHHHHHHHHcCCcHHHHHhcccCCCcHHHHHHHHHHHHcCCC
Confidence 46666554 5899999998888988887755 568888876 3 445889999999999999887754
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.88 E-value=0.00038 Score=61.32 Aligned_cols=91 Identities=12% Similarity=0.157 Sum_probs=64.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCC-------CcEEEEccCCcchh---------hhhCHHHHHHHHHHHHhcCcEEEEcC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWK-------LDTTIIFPENHLLQ---------RLFTPSLAQRYEQLYQQNGVKFVKVG 270 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g-------~~V~lv~~~~~~l~---------~~~~~~~~~~l~~~l~~~Gv~~~~~~ 270 (489)
+.+|+|||+|+.|+.+|..|.++| .+|+++++.+.+-. ......+.+.....+.+.|+++++ |
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~-~ 80 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFG-N 80 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEE-S
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEE-E
Confidence 458999999999999999999887 47999999875421 112334556666778899999999 8
Q ss_pred ceEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEccCCCCC
Q 011267 271 ASIKNLEAGSDGRVAAVKLEDGSTIDADTIVIGIGAKPT 309 (489)
Q Consensus 271 ~~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a~G~~p~ 309 (489)
..+.... .++ .-...+|.+++++|..+.
T Consensus 81 ~~v~~~~----------~~~-~~~~~~~~v~~atGa~~~ 108 (239)
T d1lqta2 81 VVVGEHV----------QPG-ELSERYDAVIYAVGAQSR 108 (239)
T ss_dssp CCBTTTB----------CHH-HHHHHSSEEEECCCCCEE
T ss_pred EEecccc----------chh-hhhccccceeeecCCCcc
Confidence 6542110 001 112357999999998654
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.85 E-value=0.00021 Score=67.44 Aligned_cols=36 Identities=25% Similarity=0.499 Sum_probs=31.3
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...||+||||||+||+.+|.+|++. + +|+|||+.+.
T Consensus 24 ~~~YD~IIVGsG~aG~vlA~rLae~-~---kVLvLEaG~~ 59 (351)
T d1ju2a1 24 EGSYDYVIVGGGTSGCPLAATLSEK-Y---KVLVLERGSL 59 (351)
T ss_dssp EEEEEEEEECCSTTHHHHHHHHTTT-S---CEEEECSSBC
T ss_pred cCCccEEEECccHHHHHHHHHhcCC-C---CEEEEecCCC
Confidence 3468999999999999999999875 4 6999999864
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=96.82 E-value=0.0034 Score=56.59 Aligned_cols=100 Identities=21% Similarity=0.205 Sum_probs=69.4
Q ss_pred CCcEEEECCCHHHHHHHHHHHh-CCCcEEEEccCCcchhhh--------------h------------------------
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVG-WKLDTTIIFPENHLLQRL--------------F------------------------ 247 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~-~g~~V~lv~~~~~~l~~~--------------~------------------------ 247 (489)
...|+|||+|+.|+.+|..|++ .|.+|+++++.+.+-... .
T Consensus 33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 112 (278)
T d1rp0a1 33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA 112 (278)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence 4569999999999999999976 599999999875331000 0
Q ss_pred CHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEEEe--------------CCCcEEEcCEEEEccCCCC
Q 011267 248 TPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAVKL--------------EDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 248 ~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v~~--------------~~g~~i~aD~vi~a~G~~p 308 (489)
...+...+.+.++..++.+.. ++.+..+... ++++..+.. .++.++.++.+|.++|...
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~ 185 (278)
T d1rp0a1 113 ALFTSTIMSKLLARPNVKLFN-AVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 185 (278)
T ss_dssp HHHHHHHHHHHHTSTTEEEEE-TEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHHHhCCCEEEe-CCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence 012334445566677888888 8888887643 445544432 1235789999999999764
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=96.79 E-value=0.0034 Score=47.65 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=52.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
..++|+|||+|.+|+-.|..|++... +++++.+.+... ..
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~~ak---~v~~~~~r~~~~----------~~--------------------------- 70 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTPVAK---HPIYQSLLGGGD----------IQ--------------------------- 70 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTTTSC---SSEEEECTTCCS----------CB---------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHHHhcC---EEEEEEecCccc----------cc---------------------------
Confidence 56899999999999999999988754 455544332110 00
Q ss_pred HHHCCcEEEeCCcEEEEeCCCCEEEeCCCeEEe-eCcEEec
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQTLITNSGKLLK-YGSLIVA 169 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~i~-yd~lvlA 169 (489)
..++... ..+..++...+.+.+.||..+. .|++|+|
T Consensus 71 --~~~~~~~--~~i~~~~~~~~~v~~~dG~~~~~vD~Ii~C 107 (107)
T d2gv8a2 71 --NESLQQV--PEITKFDPTTREIYLKGGKVLSNIDRVIYC 107 (107)
T ss_dssp --CSSEEEE--CCEEEEETTTTEEEETTTEEECCCSEEEEC
T ss_pred --cccceec--CCeeEEecCCCEEEEcCCCEEeCCCEEEEC
Confidence 0011112 2466778888899999999876 6999876
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=96.65 E-value=0.00048 Score=63.80 Aligned_cols=38 Identities=26% Similarity=0.397 Sum_probs=34.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
..+++|+|||+|+.|+-+|..|++.|.+|+|+++.+++
T Consensus 28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~ 65 (370)
T d2iida1 28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP 65 (370)
T ss_dssp SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 46789999999999999999999999999999988754
|
| >d3lada3 d.87.1.1 (A:349-472) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.62 E-value=0.0011 Score=51.86 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=50.2
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCccc
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVEA 487 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~~~~~ 487 (489)
.+.++.++ +++|+|+++++.+++++...-. +++++.+++ . ..++.|||+.|+++.|++++.++.
T Consensus 52 G~vKlv~d~~t~~ILGa~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~~ 120 (124)
T d3lada3 52 GFVKVIADAKTDRVLGVHVIGPSAAELVQQGAIAMEFGTSAEDLGMMVFAHPALSEALHEAALAVSGHA 120 (124)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSCCCSSCSHHHHHHHHHHHTTCC
T ss_pred eEEEEEEECCCCEEEEEEEEcccHHHHHHHHHHHHHcCCCHHHHHhCCccCCCHHHHHHHHHHHhcCCC
Confidence 46666654 5899999998888888776654 578888886 3 345889999999999999887653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.55 E-value=0.00099 Score=61.78 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=47.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh----------------hCHHHHHHHHHHHHhcCcEEEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL----------------FTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~----------------~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
+..+|+|||+|+.|+-+|..|++.|.+|+|+|+++++-.+. +.......+.+.+++.|+++..
T Consensus 4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g~~~d~G~~~i~~~~~~~~~~l~~~lgl~~~~ 82 (449)
T d2dw4a2 4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAK 82 (449)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETTEEEESSCCEECCSBTCHHHHHHHHHTCCEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCCEEEECCCEEECCCCCcHHHHHHHHcCCccee
Confidence 45689999999999999999999999999999987764321 1001122455667788887765
|
| >d1xdia2 d.87.1.1 (A:349-466) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.53 E-value=0.0011 Score=51.52 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=46.9
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHHccCC
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEIARAALP 484 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~ 484 (489)
.+.++.++ +++|+|+.+++.++.++...-. ++..+.+++ ...++.|||+.|+++.|++++.
T Consensus 52 G~vKlv~d~~~~~ilGa~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~aa~~l~ 117 (118)
T d1xdia2 52 GFVKIFCRRSTGVVIGGVVVAPIASELILPIAVAVQNRITVNELAQTLAVYPSLSGSITEAARRLM 117 (118)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHHTCBHHHHHTSBCCSSSTHHHHHHHHHHHC
T ss_pred hheEEEEecCCCceEEEEEEcCcHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHHh
Confidence 35565554 4899999998888888776654 568888876 2446889999999999998764
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=96.52 E-value=0.0011 Score=61.19 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=35.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~ 245 (489)
.++|+|||||++|+-+|..|++.|.+|+|+++++++...
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~ 40 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGN 40 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGG
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCe
Confidence 589999999999999999999999999999999877553
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.50 E-value=0.00057 Score=50.69 Aligned_cols=80 Identities=18% Similarity=0.186 Sum_probs=56.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEE
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVA 285 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~ 285 (489)
.+++++|+|.|.+|+.+|..|.+.|.+|++++........ +.+ +.++.+++ +. .
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----------~~~-~~~~~~~~-~~-------~------ 57 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----------DKL-PEAVERHT-GS-------L------ 57 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----------GGS-CTTSCEEE-SB-------C------
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----------HHH-hhccceee-cc-------c------
Confidence 5789999999999999999999999999999876532211 112 23555555 31 0
Q ss_pred EEEeCCCcEEEcCEEEEccCCCCCCchhhh
Q 011267 286 AVKLEDGSTIDADTIVIGIGAKPTVSPFER 315 (489)
Q Consensus 286 ~v~~~~g~~i~aD~vi~a~G~~p~~~~~~~ 315 (489)
.....-.+|.||+++|..++.+++..
T Consensus 58 ----~~~~~~~~d~vi~SPGi~~~~~~~~~ 83 (93)
T d2jfga1 58 ----NDEWLMAADLIVASPGIALAHPSLSA 83 (93)
T ss_dssp ----CHHHHHHCSEEEECTTSCTTSHHHHH
T ss_pred ----chhhhccCCEEEECCCCCCCCHHHHH
Confidence 00012357999999999998776554
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.49 E-value=0.0028 Score=49.98 Aligned_cols=87 Identities=21% Similarity=0.314 Sum_probs=59.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCCCCCCCCccccCCCCCCCCCCCCCCccccCCCCCCCChhH
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAPYERPALTKGYLFPLDKKPARLPGFHTCVGSGGERQTPEW 129 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (489)
+.++|+|||||-+++-.|..|.+.. .+|+||.+.+.+.-+ . ....+.
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~~a---~~V~li~r~~~~ra~-----~-------------------------~~~~~l 79 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTKYG---SKVYIIHRRDAFRAS-----K-------------------------IMQQRA 79 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTTTS---SEEEEECSSSSCCSC-----H-------------------------HHHHHH
T ss_pred CCCEEEEEcCchHHHHHHHHHhCCC---CcEEEEEeccccccc-----h-------------------------hhhhcc
Confidence 5789999999999999999999874 379999776542100 0 011223
Q ss_pred HHHCCcEEEeCCcEEEEeCCCC-----EEEeC---CC--eEEeeCcEEec
Q 011267 130 YKEKGIEMIYQDPVTSIDIEKQ-----TLITN---SG--KLLKYGSLIVA 169 (489)
Q Consensus 130 ~~~~~i~~~~~~~V~~id~~~~-----~v~~~---~g--~~i~yd~lvlA 169 (489)
....+|+++.++++..+.-+.+ .+.+. ++ .+++.|.+++|
T Consensus 80 ~~~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVa 129 (130)
T d1vdca2 80 LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFA 129 (130)
T ss_dssp HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEEC
T ss_pred ccCCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEE
Confidence 3445799999989988865432 23322 23 46888988887
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0018 Score=47.77 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=31.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+.++|+|+|.|.+|+++|+.|.++|. +|++.|....
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~~g~---~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLARGV---TPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTC---CCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHHCCC---EEEEeeCCcC
Confidence 45789999999999999999999986 7999987643
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=96.33 E-value=0.0015 Score=59.28 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=32.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~ 242 (489)
+|+|||+|+.|+.+|..|++.|.+|+++++++++
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~ 35 (347)
T d2ivda1 2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 6899999999999999999999999999998765
|
| >d1ojta3 d.87.1.1 (A:471-598) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=96.33 E-value=0.0014 Score=51.61 Aligned_cols=63 Identities=8% Similarity=0.033 Sum_probs=48.7
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHHccCCcc
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEIARAALPVE 486 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~~~~~~~~~ 486 (489)
.+.++.++ +|+|+|+++++.+++++..... ++.++.+++ ...++.|||++|++..|++++..+
T Consensus 52 g~~Kli~d~~~g~iLGa~ivG~~A~ElI~~~~lai~~~~t~~~l~~~i~~hPT~sE~l~~Aa~~~~~~ 119 (128)
T d1ojta3 52 PFTKLIFDAETGRIIGGGIVGPNGGDMIGEVCLAIEMGCDAADIGKTIHPHPTLGESIGMAAEVALGT 119 (128)
T ss_dssp CEEEEEEETTTCBEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSSSTTHHHHHHHHHHTC
T ss_pred ceEEEEEeCCCCeEEEEEEEhhhHHHHHHHHHHHHHcCCCHHHHhhCcCcCCCHHHHHHHHHHHHcCC
Confidence 45666554 5899999998888888777655 568888876 344688999999999999887653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=96.31 E-value=0.0017 Score=57.52 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=32.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
...++|+|||+|..|+-+|..|+++|.+|+++++.
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 35678999999999999999999999999999975
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.0021 Score=56.34 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=33.6
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcch
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLL 243 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l 243 (489)
.-.|+|||+|+.|+-+|..|++.|.+|+++++++++-
T Consensus 5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~G 41 (297)
T d2bcgg1 5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG 41 (297)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence 3468999999999999999999999999999998664
|
| >d1dxla3 d.87.1.1 (A:348-470) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.18 E-value=0.0018 Score=50.61 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=48.6
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCcc
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVE 486 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~~~~ 486 (489)
.+.++.++ +++|+|+++++..+.++..... +++++.+++ . ..+..|||+.|+++.|++++.+.
T Consensus 52 G~~Klv~d~~~~~ilG~~ivG~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~ 119 (123)
T d1dxla3 52 GLVKIIAEKETDKILGVHIMAPNAGELIHEAAIALQYDASSEDIARVCHAHPTMSEAIKEAAMATYDK 119 (123)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCTTHHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCEEEEEEEehhhHHHHHHHHHHHHHcCCcHHHHhhCCCCCCCHHHHHHHHHHHHcCC
Confidence 45566554 4899999998888888776655 568888876 3 33578999999999999987653
|
| >d1lvla3 d.87.1.1 (A:336-458) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.16 E-value=0.0014 Score=51.19 Aligned_cols=63 Identities=8% Similarity=-0.021 Sum_probs=47.8
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccCCcc
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAALPVE 486 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~~~~ 486 (489)
.+.++.++ +++|+|+.+++.++.++..... ++..+.+++ . ..++.|||++|+++.|++++...
T Consensus 52 g~vklv~d~~t~~ILG~~ivG~~A~elI~~~~lai~~~~t~~~l~~~i~~hPT~sE~~~~aa~~~~~~ 119 (123)
T d1lvla3 52 GFVRVVARRDNHLILGWQAVGVAVSELSTAFAQSLEMGACLEDVAGTIHAHPTLGEAVQEAALRALGH 119 (123)
T ss_dssp CEEEEEEETTTCBEEEEEEEETTGGGHHHHHHHHHHHTCBHHHHHTSCCCTTCTTHHHHHHHHHHTTC
T ss_pred hheeeeeecccccceEEEEEeCchhhHHHHHHHHHHcCCCHHHHhcCCCCCCCHHHHHHHHHHHHcCC
Confidence 35555544 4899999988888888776654 568888876 3 44588999999999999887654
|
| >d1ebda3 d.87.1.1 (A:347-461) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.14 E-value=0.0033 Score=48.40 Aligned_cols=60 Identities=7% Similarity=0.029 Sum_probs=45.8
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC-h-hhhcCCCcHHHHHHHHHccC
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-K-AKLQQASSVEEALEIARAAL 483 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~-~~~~~~~~~~e~~~~~~~~~ 483 (489)
.+.++.++ +++|+|+.+++.+++++...-. +++++.+++ . ..++.|||+.|+++.|++.+
T Consensus 50 G~vKli~~~~~~~iLG~~ivg~~A~elI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~Aa~~a 114 (115)
T d1ebda3 50 GFLKLVVRKEDGVIIGAQIIGPNASDMIAELGLAIEAGMTAEDIALTIHAHPTLGEIAMEAAEVA 114 (115)
T ss_dssp CEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHHTCBHHHHHHSCCCTTSSTHHHHHHHHHT
T ss_pred EEEEEEEeCCcceEEEEEEEcCCHHHHHHHHHHHHHcCCCHHHHhhCCCCCCCHHHHHHHHHHHh
Confidence 45565554 5899999988888888776655 568888776 2 44588999999999998764
|
| >d1m6ia3 d.87.1.1 (A:478-608) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0048 Score=46.98 Aligned_cols=39 Identities=8% Similarity=0.157 Sum_probs=33.2
Q ss_pred CcEEEEEEECCEEEEEEeccCCHHHhHHHHHHHhcCCCCC
Q 011267 423 PKIATFWIDSGKLKGVLVESGSPEEFQLLPTLARSQPFVD 462 (489)
Q Consensus 423 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (489)
+|-++||+++++|||++| .|--..+...|++|+++...+
T Consensus 84 gKGVIFYLrd~~VVGVLL-WNvFnrm~iAR~iI~~~~~~~ 122 (131)
T d1m6ia3 84 GKGVIFYLRDKVVVGIVL-WNIFNRMPIARKIIKDGEQHE 122 (131)
T ss_dssp CEEEEEEEETTEEEEEEE-ESCCSCHHHHHHHHHHCCBCS
T ss_pred CceEEEEecCCcEEEEEE-ecccCccHHHHHHHHcCCccc
Confidence 467899999999999997 687789999999998777654
|
| >d1gtea1 a.1.2.2 (A:2-183) Dihydropyrimidine dehydrogenase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Globin-like superfamily: alpha-helical ferredoxin family: Dihydropyrimidine dehydrogenase, N-terminal domain domain: Dihydropyrimidine dehydrogenase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.87 E-value=9.4e-05 Score=61.30 Aligned_cols=42 Identities=10% Similarity=-0.096 Sum_probs=35.3
Q ss_pred ccccceeeeeecceecC--CCCCceeee---cccccccccccccccc
Q 011267 3 SVSNSLSFKHGLSLWCP--QSPSLHRIR---HSSAKNFQRRGFVVAY 44 (489)
Q Consensus 3 ~~~~~~~~~~~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~ 44 (489)
..+||||+.|||+|+.+ |+++|++.. .++++..+.|+..++.
T Consensus 116 ~~~NP~p~icGRVCP~~~~CE~~C~r~~~~~~pV~I~~LeRfa~D~~ 162 (182)
T d1gtea1 116 FSDNPLGLTCGMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVF 162 (182)
T ss_dssp HHHCTTHHHHHHHCCGGGSGGGGCGGGGSTTCCCCHHHHHHHHHHHH
T ss_pred hccCchHHHHhccCCCcchHHHhCeecCCCCCCeeecHHHHHHHHHH
Confidence 46899999999999875 999999864 4788888888877753
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=95.87 E-value=0.02 Score=45.47 Aligned_cols=103 Identities=16% Similarity=0.144 Sum_probs=64.9
Q ss_pred HHHHHHHHhh---cCCCcEEEEC-CC-----H----HHHHHHHHHHhCCC--cEEEEccCCc--chhhhhCHHHHHHHHH
Q 011267 195 ADADALISSL---EKAKKVVVVG-GG-----Y----IGMEVAAAAVGWKL--DTTIIFPENH--LLQRLFTPSLAQRYEQ 257 (489)
Q Consensus 195 ~~~~~~~~~~---~~~~~vvViG-~G-----~----~g~e~A~~l~~~g~--~V~lv~~~~~--~l~~~~~~~~~~~l~~ 257 (489)
.+..++++.+ +.+.++++.- ++ . +++.++..|++.|. ++.++...+. ..+ .+.+.+.+.+.+
T Consensus 18 ~~~~~L~~~l~~~~~Gg~vv~t~p~~P~kCpgAP~e~a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~-~~~~~~~~~~~~ 96 (141)
T d1fcda2 18 EQTAILRKQLEDMADGGTVVIAPPAAPFRCPPGPYERASQVAYYLKAHKPMSKVIILDSSQTFSKQS-QFSKGWERLYGF 96 (141)
T ss_dssp HHHHHHHHHHHHSCTTCCEEEECCCSSCSSTTHHHHHHHHHHHHHGGGCSCCCEEEECSCSSCTTHH-HHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcccCCeEEEecCCCCccCCchHHHHHHHHHHHHHHcCCCCcEEEEecCCCCccCC-cccHHHHHHHHH
Confidence 3445555444 4466666552 22 1 34555556677775 5666665543 222 234566777888
Q ss_pred HHHhcCcEEEEcCc--eEEEEEeCCCCcEEEEEeCCCcEEEcCEEEEc
Q 011267 258 LYQQNGVKFVKVGA--SIKNLEAGSDGRVAAVKLEDGSTIDADTIVIG 303 (489)
Q Consensus 258 ~l~~~Gv~~~~~~~--~v~~i~~~~~~~v~~v~~~~g~~i~aD~vi~a 303 (489)
.+++.||+++. +. .+.+++. ..+ .+++.+|+++++|++++.
T Consensus 97 ~~~~~~I~~~~-~~~~~~v~vd~--~~~--~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 97 GTENAMIEWHP-GPDSAVVKVDG--GEM--MVETAFGDEFKADVINLI 139 (141)
T ss_dssp TTSSCSEEEEC-SSTTCEEEEEE--TTT--EEEETTCCEEECSEEEEC
T ss_pred HHHhcCceeee-cCCceEEeecC--CcE--EEEeCCCcEEeeeEEEeC
Confidence 88899999998 65 4666653 233 467899999999999874
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=95.86 E-value=0.0031 Score=52.48 Aligned_cols=35 Identities=9% Similarity=0.339 Sum_probs=31.5
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.++|+|||+|..|..+|++|.+.|+ +|+|+++...
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~---~V~v~dr~~~ 36 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGI---KVTVACRTLE 36 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTC---EEEEEESCHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC---EEEEEECChH
Confidence 4789999999999999999999987 7999998753
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.0033 Score=57.34 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=34.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~ 245 (489)
.++|||||++|+-+|..|++.|.+|+++++++++...
T Consensus 3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~ 39 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGN 39 (298)
T ss_dssp EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGG
T ss_pred cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccc
Confidence 5899999999999999999999999999999877654
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0058 Score=56.53 Aligned_cols=59 Identities=29% Similarity=0.381 Sum_probs=43.9
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhh-----------------hCHHHHHHHHHHHHhcCcEEEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRL-----------------FTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~-----------------~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
.|+|||+|+.|+-+|..|++.|.+|+|+++++++-.+. +.+ ....+.+.+++.|++...
T Consensus 1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~-~~~~~~~l~~~lgl~~~~ 76 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGP-TQNRILRLAKELGLETYK 76 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECT-TCHHHHHHHHHTTCCEEE
T ss_pred CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCC-CChHHHHHHHHcCCccee
Confidence 38999999999999999999999999999887653211 111 123456677888887655
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.43 E-value=0.022 Score=43.26 Aligned_cols=34 Identities=18% Similarity=0.219 Sum_probs=31.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+++++|||+|.+|..-|..|.+.|.+|+++...
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~ 44 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALT 44 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 5899999999999999999999999999998754
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=95.39 E-value=0.0043 Score=57.57 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=31.3
Q ss_pred CcEEEECCCHHHHHHHHHHH-----hCCCcEEEEccCCcch
Q 011267 208 KKVVVVGGGYIGMEVAAAAV-----GWKLDTTIIFPENHLL 243 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~-----~~g~~V~lv~~~~~~l 243 (489)
-.|+|||||++|+-+|..|+ +.|.+|+++++.+.+.
T Consensus 8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~ 48 (360)
T d1pn0a1 8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV 48 (360)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence 46999999999999999996 5799999999886553
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.27 E-value=0.011 Score=47.51 Aligned_cols=38 Identities=21% Similarity=0.371 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.++++|+|||+|.-|.++|+.|...+. -.++.|+|.++
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~-~~elvL~D~~~ 40 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVVK 40 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCC-CcEEEEeeccc
Confidence 346799999999999999999999986 46899999654
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=95.27 E-value=0.0071 Score=50.46 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.++|.|||+|..|++.|..|.++|+ +|+++++.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~---~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQ---SVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC---EEEEEECCH
Confidence 3689999999999999999999987 799988754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.27 E-value=0.0045 Score=50.08 Aligned_cols=37 Identities=19% Similarity=0.429 Sum_probs=32.6
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+.++|+|||||..|+.-|..|.+.|. +|+||+++.
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA---~VtVvap~~ 46 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLMPTGC---KLTLVSPDL 46 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTC---EEEEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHHHCCC---EEEEEeCCC
Confidence 3567899999999999999999999975 899998764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.16 E-value=0.0066 Score=49.06 Aligned_cols=34 Identities=24% Similarity=0.492 Sum_probs=31.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+++++|||||.+|.+-|..|.+.|.+|+++.+.
T Consensus 12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~ 45 (150)
T d1kyqa1 12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (150)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 6899999999999999999999999999999654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.014 Score=49.16 Aligned_cols=39 Identities=26% Similarity=0.469 Sum_probs=34.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhh
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQR 245 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~ 245 (489)
-++|.|||+|.+|..+|..++..|.+|+++++.+..+.+
T Consensus 4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~ 42 (192)
T d1f0ya2 4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAK 42 (192)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred eEEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHH
Confidence 378999999999999999999999999999988765553
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=95.14 E-value=0.009 Score=53.26 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus 6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 59999999999999999999999999999864
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.05 E-value=0.015 Score=47.07 Aligned_cols=39 Identities=8% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 47 FANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 47 ~~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+..++++|+|||+|..|.++|..|...+. .+++|+|.++
T Consensus 3 ~~~k~~KI~IIGaG~VG~~lA~~l~~~~~--~el~L~D~~~ 41 (154)
T d1pzga1 3 LVQRRKKVAMIGSGMIGGTMGYLCALREL--ADVVLYDVVK 41 (154)
T ss_dssp CCSCCCEEEEECCSHHHHHHHHHHHHHTC--CEEEEECSSS
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHhCCC--ceEEEEEecc
Confidence 34567899999999999999999998876 3799998654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.04 E-value=0.014 Score=48.21 Aligned_cols=35 Identities=20% Similarity=0.096 Sum_probs=31.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.-+|+|||+|.+|+.|+......|. .|+++|.+..
T Consensus 29 pa~VvViGaGvaG~~Aa~~A~~lGA---~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGVGVAGLQAIATAKRLGA---VVMATDVRAA 63 (183)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCST
T ss_pred CcEEEEEcCcHHHHHHHHHHHHcCC---EEEEEeccHH
Confidence 4689999999999999999999975 8999997653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.00 E-value=0.0082 Score=47.30 Aligned_cols=34 Identities=18% Similarity=0.353 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++++|||.|..|...|..|.+.|+ +|++||.++.
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~---~vvvid~d~~ 34 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGH---EVLAVDINEE 34 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC---CCEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---eEEEecCcHH
Confidence 579999999999999999999987 6999998753
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.99 E-value=0.013 Score=44.75 Aligned_cols=37 Identities=35% Similarity=0.543 Sum_probs=32.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
-+.++|+|||+|..|..-|+.|.+.|. +|++++++..
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~~ga---~v~v~~~~~~ 46 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLEAGA---RLTVNALTFI 46 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTB---EEEEEESSCC
T ss_pred eCCCEEEEECCCHHHHHHHHHHHHCCC---eEEEEeccCC
Confidence 467899999999999999999999875 7999987543
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.99 E-value=0.013 Score=47.64 Aligned_cols=35 Identities=29% Similarity=0.380 Sum_probs=31.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+|+|||+|.+|+.|+..+++.|. +|+++|.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA---~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGA---QVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCC---EEEEEeCcH
Confidence 35789999999999999999999975 799999764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=94.80 E-value=0.012 Score=46.34 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.3
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|+|+|+|.-|...|..|.+.|+ +|++||+++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~---~v~vid~d~~ 34 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH---DIVLIDIDKD 34 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CcceecCChh
Confidence 369999999999999999999987 7999998753
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=94.70 E-value=0.018 Score=48.29 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=34.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchh
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQ 244 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~ 244 (489)
+-++|.|||+|.+|..+|..++..|.+|+++++.+.-+.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~ 41 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIE 41 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHh
Confidence 457899999999999999999999999999998875544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=94.61 E-value=0.015 Score=51.98 Aligned_cols=32 Identities=25% Similarity=0.363 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.|+|||+|.+|+-+|..|+++|.+|+++++.+
T Consensus 5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 48999999999999999999999999999864
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=94.57 E-value=0.089 Score=44.99 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=28.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..++|+|||+|-+|+-+|..|.+.+. +++++-+.+
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~~~~---~~~~~~~~~ 65 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAKQAA---ELFVFQRTP 65 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHHBS---EEEEEESSC
T ss_pred CCCEEEEECCCccHHHHHHHHHhhhc---ccccccccc
Confidence 57899999999999999999999864 466655544
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=94.55 E-value=0.014 Score=48.21 Aligned_cols=34 Identities=15% Similarity=0.270 Sum_probs=31.8
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.|+|+|+|+|.+|..+|..|.+.|++|++++|..
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence 5899999999999999999999999999998874
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=94.50 E-value=0.016 Score=52.45 Aligned_cols=32 Identities=22% Similarity=0.455 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~ 240 (489)
+|+|||+|.+|+-+|..|+++|. +|+|+++.+
T Consensus 3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 69999999999999999999995 799999874
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.027 Score=43.36 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=33.0
Q ss_pred CCCCCcEEEEcCch-----------HHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 48 ANENREFVIVGGGN-----------AAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 48 ~~~~~~vvIIGgG~-----------AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
....++|+|||+|+ ++..|+.+|++.|+ ++++|..++.
T Consensus 4 ~~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~---~~iliN~NP~ 52 (127)
T d1a9xa3 4 RTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY---RVINVNSNPA 52 (127)
T ss_dssp CSSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC---EEEEECSCTT
T ss_pred CCCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC---eEEEecCchH
Confidence 45678999999985 89999999999998 6999998875
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=94.34 E-value=0.057 Score=40.97 Aligned_cols=37 Identities=19% Similarity=0.356 Sum_probs=32.6
Q ss_pred CCCcEEEEcCc-----------hHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 50 ENREFVIVGGG-----------NAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 50 ~~~~vvIIGgG-----------~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
..++|+|||+| .++..|+++|++.|+ +++||..+|..
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~---~~IliN~NPeT 50 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY---ETIMVNCNPET 50 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC---EEEEECCCTTS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC---eEEEEecChhh
Confidence 56789999998 589999999999988 79999998764
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.33 E-value=0.023 Score=45.59 Aligned_cols=38 Identities=13% Similarity=0.376 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+...+|.|||+|..|.++|+.|...+. -.++.|+|..+
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l-~~el~L~Di~~ 41 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGI-ADEIVLIDANE 41 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeecc
Confidence 456789999999999999999999987 56899999654
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.98 E-value=0.026 Score=47.42 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=32.8
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++-++|.|||+|.-|...|..+++.|+ +|+++|.++.
T Consensus 2 ~~IkkvaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~ 38 (192)
T d1f0ya2 2 IIVKHVTVIGGGLMGAGIAQVAAATGH---TVVLVDQTED 38 (192)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSCHH
T ss_pred ceeEEEEEECcCHHHHHHHHHHHhCCC---cEEEEECChH
Confidence 456799999999999999999999988 7999998753
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.03 Score=45.51 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=30.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|+|||+|.-|...|..|.+.|+ +|+++++++.
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~---~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH---EVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC---EEEEECSSCC
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC---ceEEEEcCHH
Confidence 369999999999999999999987 7999998754
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=93.93 E-value=0.048 Score=44.11 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=33.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+++|.|||+|..|.++|+.|...+. -.++.|+|..+
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l-~~ElvLiD~~~ 55 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILGKSL-ADELALVDVLE 55 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 346799999999999999999999987 56899998753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=93.86 E-value=0.024 Score=46.95 Aligned_cols=33 Identities=21% Similarity=-0.011 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+++.|||+|..|.-+|..|.+.|++|+++.+.+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~ 34 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA 34 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence 789999999999999999999999999998764
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=93.70 E-value=0.034 Score=45.19 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
||+|+|+|.+|.-+|..|.+.|.+|+++.|.+.
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 689999999999999999999999999998764
|
| >d3grsa3 d.87.1.1 (A:364-478) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.69 E-value=0.029 Score=42.76 Aligned_cols=55 Identities=9% Similarity=0.016 Sum_probs=41.6
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHH
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEI 478 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~ 478 (489)
.+.++.++ +++|+|++++++.++++..... ++.++.+++ ...++.|||+.|++..
T Consensus 54 g~~k~i~~~~~~~ilG~~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~ 113 (115)
T d3grsa3 54 CVMKMVCANKEEKVVGIHMQGLGCDEMLQGFAVAVKMGATKADFDNTVAIHPTSSEELVT 113 (115)
T ss_dssp EEEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGS
T ss_pred eeEEEEEecCCceEEEEEEeccCHHHHHHHHHHHHHcCCCHHHHhhCccCCCCHHHHHHh
Confidence 35565554 6999999998888988887755 568888776 3446889999998863
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.68 E-value=0.035 Score=44.30 Aligned_cols=35 Identities=20% Similarity=0.414 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++|.|||+|..|.++|..|..++. -.++.|+|.++
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~ 36 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGV-ADDYVFIDANE 36 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSSH
T ss_pred CeEEEECcCHHHHHHHHHHHhcCC-CceEEEEeccc
Confidence 689999999999999999999886 56899998653
|
| >d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.50 E-value=0.04 Score=42.26 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=40.8
Q ss_pred EEEEEE--ECCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHH
Q 011267 425 IATFWI--DSGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEI 478 (489)
Q Consensus 425 ~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~ 478 (489)
+.++.+ ++++|+|+++++.+++++.+... ++.++.+++ ...++.|||++|++..
T Consensus 59 ~~kli~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~ 117 (119)
T d1onfa3 59 YLKLVCVGKDELIKGLHIIGLNADEIVQGFAVALKMNATKKDFDETIPIHPTAAEEFLT 117 (119)
T ss_dssp EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCTTCSTTHHHH
T ss_pred eEEEEEecCCCcEEEEEEeCCCHHHHHHHHHHHHHcCCcHHHHhhCcccCCCHHHHHHh
Confidence 444444 35999999998888998887755 568888776 3445889999999875
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.45 E-value=0.053 Score=43.83 Aligned_cols=38 Identities=18% Similarity=0.329 Sum_probs=32.7
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+++.+|.|||+|..|.++|+.|...+. -.++.|+|..+
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l-~~elvL~D~~~ 54 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGL-ADELALVDADT 54 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTS-CSEEEEECSCH
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeCCc
Confidence 455689999999999999999999987 56899998653
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=93.43 E-value=0.06 Score=41.95 Aligned_cols=76 Identities=14% Similarity=0.186 Sum_probs=49.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
|+++|+|.|.+|..+|..|.+.|.+|++++..+ +.. +.+++.|...+. +. ..+..
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~---------~~~----~~~~~~~~~~~~-gd-------~~~~~---- 55 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINE---------EKV----NAYASYATHAVI-AN-------ATEEN---- 55 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCH---------HHH----HHTTTTCSEEEE-CC-------TTCTT----
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcH---------HHH----HHHHHhCCccee-ee-------cccch----
Confidence 579999999999999999999999999998653 222 234566766665 31 00000
Q ss_pred EeCCCcEEEcCEEEEccCCCC
Q 011267 288 KLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 288 ~~~~g~~i~aD~vi~a~G~~p 308 (489)
.+..-..-.||.+|++++...
T Consensus 56 ~l~~a~i~~a~~vi~~~~~~~ 76 (134)
T d2hmva1 56 ELLSLGIRNFEYVIVAIGANI 76 (134)
T ss_dssp HHHHHTGGGCSEEEECCCSCH
T ss_pred hhhccCCccccEEEEEcCchH
Confidence 011101235788999887643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.38 E-value=0.096 Score=40.69 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+|+|+|+|.+|..+|..|.+.|.+|++++..+
T Consensus 2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~ 33 (132)
T d1lssa_ 2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK 33 (132)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence 68999999999999999999999999998653
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=93.34 E-value=0.05 Score=43.12 Aligned_cols=36 Identities=19% Similarity=0.208 Sum_probs=30.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
.+|.|||+|..|.++|..|...+. -.++.|+|..+.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~D~~~~ 37 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQT-ANELVLIDVFKE 37 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-SSEEEEECCC--
T ss_pred CeEEEECCCHHHHHHHHHHHhcCC-CCEEEEEeccCC
Confidence 589999999999999999999987 568999996653
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=93.05 E-value=0.04 Score=38.49 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=30.9
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
|+|.|+|+|..|..++....++|.++.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 5789999999999999999999999999987653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=93.04 E-value=0.058 Score=38.85 Aligned_cols=74 Identities=22% Similarity=0.160 Sum_probs=51.8
Q ss_pred cEEEECCCHHHH-HHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCCcEEEE
Q 011267 209 KVVVVGGGYIGM-EVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDGRVAAV 287 (489)
Q Consensus 209 ~vvViG~G~~g~-e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~~v~~v 287 (489)
|+=+||-|=+|+ -+|..|.+.|..|+-.++.+. ...+.|++.|++++. +.....
T Consensus 3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~------------~~t~~L~~~Gi~i~~-gh~~~~------------ 57 (89)
T d1j6ua1 3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET------------ERTAYLRKLGIPIFV-PHSADN------------ 57 (89)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC------------HHHHHHHHTTCCEES-SCCTTS------------
T ss_pred EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC------------hhHHHHHHCCCeEEe-eecccc------------
Confidence 566788766666 469999999999999876531 223458999999877 432111
Q ss_pred EeCCCcEEEcCEEEEccCCCCCCchh
Q 011267 288 KLEDGSTIDADTIVIGIGAKPTVSPF 313 (489)
Q Consensus 288 ~~~~g~~i~aD~vi~a~G~~p~~~~~ 313 (489)
.-.+|+||++.+...+.+.+
T Consensus 58 ------i~~~d~vV~SsAI~~~npel 77 (89)
T d1j6ua1 58 ------WYDPDLVIKTPAVRDDNPEI 77 (89)
T ss_dssp ------CCCCSEEEECTTCCTTCHHH
T ss_pred ------cCCCCEEEEecCcCCCCHHH
Confidence 12479999999988765543
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=93.03 E-value=0.068 Score=42.71 Aligned_cols=37 Identities=30% Similarity=0.482 Sum_probs=32.3
Q ss_pred CCCCCcEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 48 ANENREFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 48 ~~~~~~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+...++|.||| .|.-|.+.|+.|++.|+ +|+++|++.
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~---~V~~~d~~~ 43 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGY---PISILDRED 43 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTC---CEEEECTTC
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCC---CcEeccccc
Confidence 45678999999 69999999999999988 799988754
|
| >d1gesa3 d.87.1.1 (A:336-450) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=92.96 E-value=0.038 Score=42.07 Aligned_cols=53 Identities=8% Similarity=-0.054 Sum_probs=40.0
Q ss_pred EEEEEEE--CCEEEEEEeccCCHHHhHHHHHH-HhcCCCCC--hhhhcCCCcHHHHHH
Q 011267 425 IATFWID--SGKLKGVLVESGSPEEFQLLPTL-ARSQPFVD--KAKLQQASSVEEALE 477 (489)
Q Consensus 425 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~e~~~ 477 (489)
+.++.++ +++|+|+.+++++++++.....+ +.++.+++ ...++.|||++|++.
T Consensus 55 ~~k~v~~~~~~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~ 112 (115)
T d1gesa3 55 RMKLVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFV 112 (115)
T ss_dssp EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGG
T ss_pred eEEEEEecCCcEEEEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcccCCcHHHHHH
Confidence 4555543 58999999988889988877654 67888776 244588999999875
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=92.76 E-value=0.048 Score=50.56 Aligned_cols=33 Identities=21% Similarity=0.135 Sum_probs=30.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
.|+|||+|+.|+-+|..|++.|.+|.++|+..+
T Consensus 4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~~ 36 (367)
T d1n4wa1 4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQL 36 (367)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCCC
Confidence 489999999999999999999999999999743
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=92.72 E-value=0.07 Score=42.26 Aligned_cols=35 Identities=11% Similarity=0.291 Sum_probs=30.6
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
.+|.|||+|..|.++|+.|...+. -.++.|+|.++
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l-~~ElvL~D~~~ 36 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIAK 36 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-CcEEEEEEecc
Confidence 479999999999999999999987 56899998653
|
| >d1feca3 d.87.1.1 (A:358-485) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=92.59 E-value=0.034 Score=43.29 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=42.0
Q ss_pred EEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHH
Q 011267 425 IATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEIAR 480 (489)
Q Consensus 425 ~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~~~ 480 (489)
+.++..+ +++|+|+++++.+++++..... ++.++.+++ ...++.|||++|+|....
T Consensus 54 ~~klv~~~~~g~iLGa~ivG~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~l~~~~ 114 (128)
T d1feca3 54 MVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMR 114 (128)
T ss_dssp EEEEEEETTTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSGGGGGSCC
T ss_pred eEEEeecCCCCceeEEEEECCCHHHHHHHHHHHHHcCCcHHHHhcCcCCCCcHHHHHHHHH
Confidence 4555543 5899999998888988887755 568888776 344688999999986643
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=92.49 E-value=0.059 Score=44.88 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=31.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+-++|.|||+|.-|...|..++..|+ +|+++|.++.
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~~G~---~V~l~D~~~~ 38 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSASKGT---PILMKDINEH 38 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHHTTC---CEEEECSSHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCC---eEEEEECCHH
Confidence 45689999999999999999999987 6999998753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=92.33 E-value=0.041 Score=45.99 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.1
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+.+|+|||+|.-|.+.|..|.+.|. +|+|+++++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~~g~---~V~l~~r~~ 40 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSKKCR---EVCVWHMNE 40 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHTTEE---EEEEECSCH
T ss_pred ceeceEEEECCCHHHHHHHHHHHHcCC---eEEEEEecH
Confidence 445689999999999999999999876 799988764
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=92.28 E-value=0.061 Score=49.94 Aligned_cols=32 Identities=25% Similarity=0.287 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.++|||+|..|+-+|..|++.|.+|.++|+..
T Consensus 9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~ 40 (370)
T d3coxa1 9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMGR 40 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 58999999999999999999999999999874
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.18 E-value=0.1 Score=39.21 Aligned_cols=40 Identities=20% Similarity=0.276 Sum_probs=34.4
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
.....+|-|||||.-|...|...++.|+ ++.++|+++..|
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~---~v~v~d~~~~~P 47 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGV---EVIAVDRYADAP 47 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTC---EEEEEESSTTCG
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCC---EEEEEcCCCCCc
Confidence 3455689999999999999999999988 799999887654
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=91.98 E-value=0.096 Score=41.38 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=30.1
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|.|||+|.-|.++|..|...+. -.++.|+|.++
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l-~~el~L~Di~~ 35 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQL-ARELVLLDVVE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-CSEEEEECSSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-CceEEEecccc
Confidence 69999999999999999999886 56899999654
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.96 E-value=0.11 Score=39.01 Aligned_cols=35 Identities=23% Similarity=0.334 Sum_probs=31.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
...+|.|+|||.+|..+|.+..++|.++.++++.+
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 34679999999999999999999999999998764
|
| >d1h6va3 d.87.1.1 (A:367-499) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.93 E-value=0.02 Score=45.00 Aligned_cols=50 Identities=10% Similarity=0.027 Sum_probs=39.2
Q ss_pred ECCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC--hhhhcCCCcHHHHHHHHH
Q 011267 431 DSGKLKGVLVESGSPEEFQLLPT-LARSQPFVD--KAKLQQASSVEEALEIAR 480 (489)
Q Consensus 431 ~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~e~~~~~~ 480 (489)
++++|+|+++++.++.++.+.-. +++++.+++ ...++.|||+.|++..++
T Consensus 65 ~~~~ILGa~ivg~~A~ElI~~~~~ai~~~~t~~~l~~~i~~hPT~sE~~~~l~ 117 (133)
T d1h6va3 65 DNERVVGFHVLGPNAGEVTQGFAAALKCGLTKQQLDSTIGIHPVCAEIFTTLS 117 (133)
T ss_dssp GTTEEEEEEEESTTHHHHHHHHHHHHHTTCBHHHHHHSCCCTTCGGGGGGGCC
T ss_pred CcccEEEEEEeCCCHHHHHHHHHHHHHcCCCHHHHhhccccCCCHHHHHHHhh
Confidence 36899999998888988877754 568888886 355699999999984433
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=91.91 E-value=0.093 Score=42.74 Aligned_cols=35 Identities=23% Similarity=0.460 Sum_probs=30.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
..++|+|||+|-++-+++..|.+.|.+ +|+|+.+.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~--~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFE--KLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCC--CEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCC--EEEEeccc
Confidence 457899999999999999999999863 78887764
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=91.91 E-value=0.092 Score=41.50 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=29.5
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++|.|||+|..|.++|..|...+. .++.++|..+
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l--~dl~l~D~~~ 35 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKEL--GDIVLLDIVE 35 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCc--ceEEEEeecc
Confidence 589999999999999999998876 3799998654
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=91.85 E-value=0.061 Score=39.34 Aligned_cols=78 Identities=17% Similarity=0.158 Sum_probs=54.3
Q ss_pred hcCCCcEEEECCCHHHHHH-HHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 204 LEKAKKVVVVGGGYIGMEV-AAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~-A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
+...+++-+||-|=+|+-. |..|.++|.+|+-.+.... ...+.+++.|++++. +.....+
T Consensus 5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~------------~~~~~L~~~Gi~v~~-g~~~~~i------ 65 (96)
T d1p3da1 5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADG------------VVTQRLAQAGAKIYI-GHAEEHI------ 65 (96)
T ss_dssp CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCS------------HHHHHHHHTTCEEEE-SCCGGGG------
T ss_pred chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCC------------hhhhHHHHCCCeEEE-CCccccC------
Confidence 3467889999877777654 9999999999999876531 122456678999887 5322111
Q ss_pred cEEEEEeCCCcEEEcCEEEEccCCCCCCch
Q 011267 283 RVAAVKLEDGSTIDADTIVIGIGAKPTVSP 312 (489)
Q Consensus 283 ~v~~v~~~~g~~i~aD~vi~a~G~~p~~~~ 312 (489)
-.+|+||++.+...+...
T Consensus 66 ------------~~~d~vV~S~AI~~~npe 83 (96)
T d1p3da1 66 ------------EGASVVVVSSAIKDDNPE 83 (96)
T ss_dssp ------------TTCSEEEECTTSCTTCHH
T ss_pred ------------CCCCEEEECCCcCCCCHH
Confidence 135899999998765443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.50 E-value=0.11 Score=42.25 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.4
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++|.|||.|.-|.+.|+.|++.|+ ..+|+.+|+++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~-~~~I~~~D~~~ 36 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGF-KGKIYGYDINP 36 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTC-CSEEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHHhcCC-CeEEEEEECCh
Confidence 479999999999999999999987 66788887653
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.41 E-value=0.017 Score=50.05 Aligned_cols=26 Identities=31% Similarity=0.436 Sum_probs=23.4
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEE
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTT 234 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~ 234 (489)
+|+|||+|.+|+-.|..|++.|.+|+
T Consensus 2 kV~VIGaGi~GlstA~~L~~~G~~v~ 27 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHERYHSVL 27 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTS
T ss_pred EEEEECchHHHHHHHHHHHHCCCCce
Confidence 69999999999999999999987643
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=91.34 E-value=0.085 Score=44.48 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=29.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|.|||.|..|+..|..|++.|+ +|+.+|.+.
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~---~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGH---EVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC---EEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCC---cEEEEeCCH
Confidence 59999999999999999999987 799999764
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.05 E-value=0.12 Score=40.78 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=29.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|.|||+|..|.++|..|...+. -.++.|+|.++
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~~-~~elvL~Di~~ 35 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLNLD-VDEIALVDIAE 35 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHHSC-CSEEEEECSSH
T ss_pred EEEEECcCHHHHHHHHHHHhcCc-CceEEEEeccc
Confidence 79999999999999999998886 56899998653
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.03 E-value=0.094 Score=41.54 Aligned_cols=33 Identities=12% Similarity=0.208 Sum_probs=29.1
Q ss_pred cEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 53 ~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+|+|||| |..|.++|..|...+. -.++.|+|.+
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~-~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTT-CSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHhCCc-cceEEEEecc
Confidence 6999996 9999999999999987 5689999864
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=90.89 E-value=0.26 Score=43.78 Aligned_cols=58 Identities=26% Similarity=0.498 Sum_probs=43.0
Q ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 206 KAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 206 ~~~~vvViG~-G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
+.++|+|+|| |++|..++..|.+.|.+|+.+.|..... +.... .....+...+++++.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~----~~~~~-~~~~~~~~~~v~~v~ 60 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVS----NIDKV-QMLLYFKQLGAKLIE 60 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSS----CHHHH-HHHHHHHTTTCEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCccc----chhHH-HHHhhhccCCcEEEE
Confidence 3567999996 9999999999999999999998865432 22222 233556777888776
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.74 E-value=0.16 Score=38.30 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=29.7
Q ss_pred CCCcEEEECCC-----------HHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVGGG-----------YIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG~G-----------~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..++++|+|+| +.+.+++.+|++.|.++.++...+
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP 48 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP 48 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence 45789999998 468889999999999999987663
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=90.52 E-value=0.16 Score=40.37 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=29.7
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
-+|||+|.|.-|...+..|.+.|. ++++|+.++
T Consensus 4 nHiII~G~g~~g~~l~~~L~~~~~---~v~vId~d~ 36 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQRGQ---NVTVISNLP 36 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC---CEEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHcCC---CEEEEeccc
Confidence 479999999999999999999876 699998765
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.46 E-value=0.14 Score=40.27 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=29.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+|.|||+|.-|.++|..|...+. -.++.|+|.+
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l-~~el~L~Di~ 34 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD 34 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTC-CSEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-CCEEEEEecc
Confidence 69999999999999999999887 5689999865
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=90.34 E-value=0.2 Score=41.03 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=32.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
++-+|+|+|+|..|+..+..+..+|..|++++.+..
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 467999999999999999999999999999987753
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.15 Score=42.85 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=31.3
Q ss_pred CCCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
|.+++|+|+|| |..|-..+.+|.++|+ +|+++.+++
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~---~V~~~~R~~ 37 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGY---EVTVLVRDS 37 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTC---EEEEEESCG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcC---EEEEEEcCh
Confidence 45778999995 9999999999999987 799998764
|
| >d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=90.20 E-value=0.082 Score=41.72 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=33.1
Q ss_pred HHCCcEEEeCC--cEEEEeCCCCEEEeCCCeEEeeCcEEec
Q 011267 131 KEKGIEMIYQD--PVTSIDIEKQTLITNSGKLLKYGSLIVA 169 (489)
Q Consensus 131 ~~~~i~~~~~~--~V~~id~~~~~v~~~~g~~i~yd~lvlA 169 (489)
++.+|+++.+. .+.++|..++++.+.+|+++.||.|.+-
T Consensus 99 ~~~~I~~~~~~~~~~v~vd~~~~~~~~~~Ge~v~yD~l~vv 139 (141)
T d1fcda2 99 ENAMIEWHPGPDSAVVKVDGGEMMVETAFGDEFKADVINLI 139 (141)
T ss_dssp SSCSEEEECSSTTCEEEEEETTTEEEETTCCEEECSEEEEC
T ss_pred HhcCceeeecCCceEEeecCCcEEEEeCCCcEEeeeEEEeC
Confidence 45789988764 5889999999999999999999998763
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.07 E-value=0.21 Score=39.65 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=29.7
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+.+|.|||+|..|.++|..|.+.+. .++.|+|.++
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l--~el~L~Di~~ 37 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNL--GDVVLFDIVK 37 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC--CEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCC--CeEEEEeccC
Confidence 3589999999999999998888876 3799999654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=90.06 E-value=0.19 Score=40.54 Aligned_cols=35 Identities=40% Similarity=0.544 Sum_probs=32.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
++.+++|+|+|..|+..+..+.++|..|++++.+.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~ 65 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV 65 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence 46789999999999999999999999999998653
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=89.95 E-value=0.13 Score=40.61 Aligned_cols=34 Identities=18% Similarity=0.352 Sum_probs=29.4
Q ss_pred cEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|.|||+ |.-|.++|..|...+. -.++.|+|..+
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~~~l-~~el~L~D~~~ 36 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAKEPF-MKDLVLIGREH 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHTCTT-CCEEEEEECGG
T ss_pred EEEEECCCChHHHHHHHHHHhCCc-ccccccccchh
Confidence 6999996 9999999999999886 46899998653
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=89.93 E-value=0.18 Score=41.48 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
-+.++|+|||+|-+|-+++..|.+.|.+ +|+|+++.+
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~~g~~--~i~i~nR~~ 52 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAIEGLK--EIKLFNRRD 52 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCS--EEEEEECSS
T ss_pred cCCCEEEEECCcHHHHHHHHHHhhcCCc--eEeeeccch
Confidence 3568999999999999999999999864 799988753
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.18 Score=40.95 Aligned_cols=35 Identities=11% Similarity=0.249 Sum_probs=30.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
.+.++|+|+|+|-|+-+++..|.+.|. +|+|+.+.
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~---~i~I~nRt 50 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDC---AVTITNRT 50 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccce---EEEeccch
Confidence 456899999999999999999999875 69998765
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=89.59 E-value=0.13 Score=35.81 Aligned_cols=36 Identities=14% Similarity=0.224 Sum_probs=32.0
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCCC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYAP 90 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~~ 90 (489)
+.|-|||||.-|-+.+...++.|+ ++.++++++..|
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~---~v~vldp~~~~p 37 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGI---AVWPVGLDAEPA 37 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTE---EEEEECTTSCGG
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCC---EEEEEcCCCCCc
Confidence 579999999999999999999988 799999887643
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=89.55 E-value=0.15 Score=42.04 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=27.9
Q ss_pred CcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcC
Q 011267 52 REFVIVGGGNAAGYAARTFVEHGMADGRLCIVSK 85 (489)
Q Consensus 52 ~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~ 85 (489)
.+|.|||+|.-|.+.|..|.+.|+ +|+|+.+
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~---~V~l~~r 31 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGN---EVRIWGT 31 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCC---EEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC---EEEEEEe
Confidence 369999999999999999999986 7999875
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=89.41 E-value=0.71 Score=36.34 Aligned_cols=53 Identities=8% Similarity=0.070 Sum_probs=40.1
Q ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 207 AKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 207 ~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
..+++|+|.|..|..++..|.+.|.++++++..+. . .....+.+...|+.++.
T Consensus 3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~--------~-~~~~~~~~~~~~~~vi~ 55 (153)
T d1id1a_ 3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPE--------D-DIKQLEQRLGDNADVIP 55 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCH--------H-HHHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccch--------h-HHHHHHHhhcCCcEEEE
Confidence 35799999999999999999999999999976541 1 12222345567888887
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.08 E-value=0.21 Score=40.25 Aligned_cols=32 Identities=25% Similarity=0.235 Sum_probs=28.3
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|.|||.|.-|.+.|+.|++.|+ +|+++|+++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~---~V~~~d~~~ 33 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGH---YLIGVSRQQ 33 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC---EEEEECSCH
T ss_pred EEEEEeecHHHHHHHHHHHHCCC---EEEEEECCc
Confidence 59999999999999999999987 698887653
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=88.66 E-value=0.24 Score=39.72 Aligned_cols=36 Identities=17% Similarity=0.477 Sum_probs=30.9
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
.+.++|+|||+|-.|-..+.+|...|.+ +++++.+.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~~g~~--~i~v~nRt 57 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVDRGVR--AVLVANRT 57 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHHHCCS--EEEEECSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHhcCCc--EEEEEcCc
Confidence 4678899999999999999999999863 68887764
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=88.63 E-value=0.49 Score=41.45 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=42.8
Q ss_pred CCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEE
Q 011267 207 AKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVK 268 (489)
Q Consensus 207 ~~~vvViG~-G~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~ 268 (489)
.+||+|+|| |++|..++..|.+.|.+|+.+.|.+.... .+..... ...+...+++++.
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~---~~~~~~~-~~~~~~~~~~~~~ 61 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASS---NSEKAQL-LESFKASGANIVH 61 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTT---THHHHHH-HHHHHTTTCEEEC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcccc---chhHHHH-HHhhccCCcEEEE
Confidence 478999996 99999999999999999999998765433 2222222 3446667777765
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=88.19 E-value=0.28 Score=38.85 Aligned_cols=35 Identities=26% Similarity=0.256 Sum_probs=31.7
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG-~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.-++|.||| .|.+|.-+|..|.+.|++|+++++..
T Consensus 8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~ 43 (152)
T d2pv7a2 8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED 43 (152)
T ss_dssp TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence 347999999 69999999999999999999998765
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.95 E-value=0.33 Score=41.13 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHH
Q 011267 49 NENREFVIVGGGNAAGYAARTFV 71 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~ 71 (489)
...++|||||+|-.++=||+.|.
T Consensus 37 ~~gk~VvVIGgGNvAlD~AR~ll 59 (216)
T d1lqta1 37 LSGARAVVIGNGNVALDVARILL 59 (216)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHH
T ss_pred ccCceEEEECCCchhHhhhhhhc
Confidence 34689999999999999999887
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=87.78 E-value=0.16 Score=42.20 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=30.1
Q ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
++++|+|+|..|.-+|..|.+.|.+|+++.|.+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence 579999999999999999999999999987653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.71 E-value=0.28 Score=39.76 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=29.6
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+.|+.++.-++..|. .+|+++|.++
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~--~~Vi~~d~~~ 61 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGA--AQVVVTDLSA 61 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCC--ceEEeccCCH
Confidence 34579999999999999999998875 2688888654
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=87.66 E-value=0.3 Score=38.35 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=28.2
Q ss_pred cEEEEc-CchHHHHHHHHHHHcCCCCCcEEEEcC
Q 011267 53 EFVIVG-GGNAAGYAARTFVEHGMADGRLCIVSK 85 (489)
Q Consensus 53 ~vvIIG-gG~AGl~aA~~L~~~g~~~~~V~li~~ 85 (489)
+|.||| +|..|.++|..|...+. -.++.|+|-
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l-~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDI-ADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-CSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCC-CCEEEEEec
Confidence 699999 69999999999999987 567999884
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=87.55 E-value=0.25 Score=42.79 Aligned_cols=37 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+..+|+|||.|--|-.+|..|++.|.+ +++|+|.+..
T Consensus 29 ~~~~VliiG~GglGs~va~~La~~Gvg--~i~lvD~D~V 65 (247)
T d1jw9b_ 29 KDSRVLIVGLGGLGCAASQYLASAGVG--NLTLLDFDTV 65 (247)
T ss_dssp HHCEEEEECCSHHHHHHHHHHHHHTCS--EEEEECCCBC
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCC--eEEEECCccc
Confidence 357899999999999999999999974 8999997753
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=87.33 E-value=0.27 Score=45.31 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.++|||+|..|+-+|..|++.|.+|.++|+..
T Consensus 4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~ 35 (360)
T d1kdga1 4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG 35 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence 57999999999999999999999999999885
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.09 E-value=0.37 Score=40.22 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+|.|||.|++|+-+|..|++.|.+|+.++...
T Consensus 2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~ 33 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS 33 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999998764
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=86.92 E-value=0.39 Score=40.59 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=34.1
Q ss_pred CCCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCCC
Q 011267 48 ANENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAYA 89 (489)
Q Consensus 48 ~~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~~ 89 (489)
.....+||+.|+|.||+..|..|.+.+.+ ++.++|+....
T Consensus 23 ~l~d~riv~~GAGsAg~gia~~l~~~~~~--~i~~~D~~GLi 62 (222)
T d1vl6a1 23 KIEEVKVVVNGIGAAGYNIVKFLLDLGVK--NVVAVDRKGIL 62 (222)
T ss_dssp CTTTCEEEEECCSHHHHHHHHHHHHHTCC--EEEEEETTEEC
T ss_pred ChhhcEEEEEChHHHHHHHHHHHHHhccc--ceEeecceeEE
Confidence 35668899999999999999999999864 89999987543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.78 E-value=0.45 Score=38.04 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=33.2
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
+-.+|+++|+|-|.+|-.+|..++..|.+|++++..
T Consensus 21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~d 56 (163)
T d1li4a1 21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEID 56 (163)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred eecCCEEEEeccccccHHHHHHHHhCCCeeEeeecc
Confidence 457899999999999999999999999999999865
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=86.74 E-value=0.34 Score=38.92 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
+|.|||.|..|.-+|..|.+.|.+|+.+++.
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999998765
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=86.49 E-value=0.52 Score=38.26 Aligned_cols=36 Identities=25% Similarity=0.186 Sum_probs=31.2
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 239 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~ 239 (489)
.+.+++|+|+|+|.+|+-.++.++..|. +|..+++.
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR 61 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence 5678999999999999999999999997 57777654
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=85.98 E-value=0.45 Score=37.37 Aligned_cols=33 Identities=12% Similarity=0.185 Sum_probs=26.5
Q ss_pred cEEEEc-CchHHHHHHHHHHHc-CCCCCcEEEEcCC
Q 011267 53 EFVIVG-GGNAAGYAARTFVEH-GMADGRLCIVSKE 86 (489)
Q Consensus 53 ~vvIIG-gG~AGl~aA~~L~~~-g~~~~~V~li~~~ 86 (489)
+|.||| +|..|.++|+.|..+ +. ..++.|+|.+
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~-~~el~L~D~~ 36 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPS-GSELSLYDIA 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCT-TCEEEEECSS
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCC-CcEEEEeccc
Confidence 799999 599999999988644 54 4589999854
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=85.97 E-value=0.79 Score=36.08 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=26.7
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPEN 240 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~ 240 (489)
++.+||+|..|.-++..|.+.| .++.++.|.+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~ 34 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGA 34 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCCh
Confidence 5889999999999999887776 7888877653
|
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.95 E-value=0.45 Score=40.46 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=31.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHc--------------------CCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEH--------------------GMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~--------------------g~~~~~V~li~~~~~ 88 (489)
...++|||||+|-.++=||+.|.+. +. .+|+++.+...
T Consensus 37 ~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~--~~V~iv~RRg~ 94 (225)
T d1cjca1 37 LSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRV--KTVWIVGRRGP 94 (225)
T ss_dssp TTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCC--CEEEEECSSCG
T ss_pred ccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCC--CeEEEEEEcCh
Confidence 3468999999999999999999884 43 38999998753
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.77 E-value=0.37 Score=39.44 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=28.8
Q ss_pred cEEEE-CCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 209 KVVVV-GGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 209 ~vvVi-G~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
+|.|+ |+|.+|..+|..|++.|++|++..|.+
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 57899 669999999999999999999998764
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=85.70 E-value=0.4 Score=39.00 Aligned_cols=36 Identities=17% Similarity=0.161 Sum_probs=29.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+.|+.++..++..|.. +|+++|..+
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~--~Vi~~d~~~ 62 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAG--RIIGVGSRP 62 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCS--CEEEECCCH
T ss_pred CCCEEEEEcCCcchhhhhhhhhccccc--ccccccchh
Confidence 455799999999999999999988752 688888754
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.39 E-value=0.29 Score=40.10 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=28.5
Q ss_pred cEEEE-cCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 53 EFVIV-GGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 53 ~vvII-GgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
+|.|| |+|.-|.+.|..|++.|+ +|++.++++
T Consensus 2 ki~vigGaG~iG~alA~~la~~G~---~V~l~~R~~ 34 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLATLGH---EIVVGSRRE 34 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHTTTC---EEEEEESSH
T ss_pred EEEEEeCCcHHHHHHHHHHHHCCC---EEEEEECCH
Confidence 58999 669999999999999988 799998875
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=85.31 E-value=0.46 Score=38.23 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=32.7
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.+.+++++|+|+|.+|+-+++.++..|.+|..+++.+
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~ 60 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP 60 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence 4578899999999999999999999999998887653
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=85.21 E-value=0.52 Score=38.08 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=32.1
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
..+++++|+|+|-.+--++..|.+.|.+++++.|..
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~ 51 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV 51 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence 367899999999999999999999999999987763
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.11 E-value=0.5 Score=38.03 Aligned_cols=35 Identities=17% Similarity=0.254 Sum_probs=28.8
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+.|+.++..++..|. +|++++.++
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~---~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGA---ETYVISRSS 61 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC---EEEEEESSS
T ss_pred CCCEEEEECCCCcchhHHHHhhhccc---cccccccch
Confidence 44679999999999999988888765 788888754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.06 E-value=0.34 Score=39.67 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
+|.|||+|..|.-+|..|.+.|.+|+++.|.
T Consensus 2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHHCCEEEEECCG
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEec
Confidence 5899999999999999999999999998764
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=85.02 E-value=0.35 Score=38.96 Aligned_cols=35 Identities=9% Similarity=0.131 Sum_probs=29.1
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+-|+.++..++..|. +|+++|..+
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga---~vi~v~~~~ 60 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGA---FVVCTARSP 60 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCCEEEEEcccccchhhHhhHhhhcc---cccccchHH
Confidence 34579999999999999998888764 799998754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.87 E-value=0.44 Score=38.35 Aligned_cols=38 Identities=26% Similarity=0.201 Sum_probs=33.4
Q ss_pred hhcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 203 SLEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 203 ~~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
....+++++|+|+|.+|+-.++.++..|.+|..+.+++
T Consensus 24 ~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 24 GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CcCCCCEEEEECCCCcchhHHHHhhhccccccccccch
Confidence 35678999999999999999999999999998888765
|
| >d1mo9a3 d.87.1.1 (A:384-523) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CO dehydrogenase flavoprotein C-domain-like superfamily: FAD/NAD-linked reductases, dimerisation (C-terminal) domain family: FAD/NAD-linked reductases, dimerisation (C-terminal) domain domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=84.82 E-value=0.53 Score=36.70 Aligned_cols=57 Identities=18% Similarity=0.057 Sum_probs=41.0
Q ss_pred cEEEEEEE--CCEEEEEEeccCCHHHhHHHHH-HHhcCCCCC-hhh---hcCCCcHHHHHHHHH
Q 011267 424 KIATFWID--SGKLKGVLVESGSPEEFQLLPT-LARSQPFVD-KAK---LQQASSVEEALEIAR 480 (489)
Q Consensus 424 ~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~---~~~~~~~~e~~~~~~ 480 (489)
.+.++.++ +++|+|+++++.+++++...-. +++++.+++ ... .+.|||..|.|....
T Consensus 68 G~vKlv~d~~t~~IlGa~ivG~~A~ElI~~~~~ai~~~~t~~dl~~~~~i~~hPT~~~~l~~l~ 131 (140)
T d1mo9a3 68 GFQKIVIDAKTRKVLGAHHVGYGAKDAFQYLNVLIKQGLTVDELGDMDELFLNPTHFIQLSRLR 131 (140)
T ss_dssp CEEEEEEETTTCBEEEEEEEESSCHHHHHHHHHHHHTTCBHHHHHTSCCCSSCSCCHHHHHHHH
T ss_pred ceEEEEEecCCCcEEEEEEECCCHHHHHHHHHHHHHcCCCHHHHHhcCCCCCCCChHHHHHHHh
Confidence 46666654 5999999998888888776654 568888876 333 467899988774443
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.80 E-value=0.59 Score=37.93 Aligned_cols=36 Identities=14% Similarity=0.098 Sum_probs=29.3
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+-|+.++..++..|. ..|++.|.++
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga--~~Vi~~d~~~ 63 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGA--SRIIAIDING 63 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCG
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCC--ceeeeeccch
Confidence 44579999999999999999999885 2677777653
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.75 E-value=0.47 Score=38.00 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=28.9
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...+|+|+|+|+.|+.++.-++..|. +|+.++..+
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~---~Vi~~~~~~ 61 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGL---HVAAIDIDD 61 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESCH
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCC---ccceecchh
Confidence 34579999999999999998888764 788888654
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=84.33 E-value=0.49 Score=41.46 Aligned_cols=36 Identities=14% Similarity=0.327 Sum_probs=31.5
Q ss_pred CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
++++|+|+|| |.-|-..+..|.+.|+ +|+.+++.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~~G~---~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLDLGH---PTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEEECCCc
Confidence 4678999998 9999999999999987 6999987653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=84.19 E-value=0.48 Score=38.68 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
..+|+|+|+|+.|+.++.-++..|.+ +|++++.++
T Consensus 29 G~~VlV~GaG~iG~~~~~~ak~~Ga~--~Vi~~~~~~ 63 (182)
T d1vj0a2 29 GKTVVIQGAGPLGLFGVVIARSLGAE--NVIVIAGSP 63 (182)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTBS--EEEEEESCH
T ss_pred CCEEEEECCCccchhheecccccccc--ccccccccc
Confidence 46799999999999999999888752 688888754
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=84.10 E-value=0.52 Score=41.59 Aligned_cols=35 Identities=17% Similarity=0.310 Sum_probs=30.0
Q ss_pred CCCcEEEEcC-chHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGG-GNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGg-G~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
++.+|+|+|| |.-|...+.+|.++|+ +|+++.+.+
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~---~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGH---PTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTC---CEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEECCC
Confidence 4567999997 9999999999999987 698887753
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.90 E-value=0.49 Score=38.48 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=29.8
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
...|+|+|+|+-|+.++..++..|. .+|+.+|..+
T Consensus 30 g~tVlI~G~GgvGl~ai~~ak~~G~--~~Vi~vd~~~ 64 (176)
T d1d1ta2 30 GSTCVVFGLGGVGLSVIMGCKSAGA--SRIIGIDLNK 64 (176)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTC--SEEEEECSCG
T ss_pred CCEEEEECCCchhHHHHHHHHHcCC--ceEEEecCcH
Confidence 4469999999999999999999874 3799998764
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.50 E-value=0.62 Score=37.25 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=32.2
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
.+.+++++|+|+|.+|+-++..++..|.+|..+.+.
T Consensus 25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~ 60 (166)
T d1llua2 25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDID 60 (166)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCCCCEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence 567899999999999999999999999998888765
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=83.33 E-value=0.52 Score=43.76 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=30.7
Q ss_pred CcEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCc
Q 011267 208 KKVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENH 241 (489)
Q Consensus 208 ~~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~ 241 (489)
-.++|||+|..|+-+|..|++.+ .+|.++|+++.
T Consensus 25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY 59 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence 46999999999999999999988 69999999864
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=82.44 E-value=0.58 Score=36.76 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=30.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHHhCC--CcEEEEccCC
Q 011267 205 EKAKKVVVVGGGYIGMEVAAAAVGWK--LDTTIIFPEN 240 (489)
Q Consensus 205 ~~~~~vvViG~G~~g~e~A~~l~~~g--~~V~lv~~~~ 240 (489)
....++.|||+|.+|.-+|..|...+ .++.+++..+
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~ 40 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK 40 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence 34678999999999999999999877 4799998654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=82.32 E-value=0.66 Score=38.41 Aligned_cols=36 Identities=14% Similarity=0.093 Sum_probs=29.0
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+.|+.++..++..|. .+|+++|..+
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga--~~Vi~~d~~~ 60 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGA--AVVIVGDLNP 60 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC--SEEEEEESCH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcc--cceeeecccc
Confidence 45689999999999999998888764 3788887643
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=82.26 E-value=0.58 Score=38.15 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=31.6
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN 240 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~ 240 (489)
++.+++|+|+|+|.+|+-++..++..|. +|+++++.+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~ 63 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP 63 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCCCCEEEEECCCccchhheeccccccccccccccccc
Confidence 3567999999999999999999999997 678887653
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=82.19 E-value=0.53 Score=38.11 Aligned_cols=35 Identities=14% Similarity=0.327 Sum_probs=29.4
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
...++|+|+|+|-++-+++..|.+.+ .+|+|+.+.
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL~~~~---~~i~I~nR~ 50 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPLLQAQ---QNIVLANRT 50 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTT---CEEEEEESS
T ss_pred CCCCEEEEECCcHHHHHHHHHHcccC---ceeeeccch
Confidence 45678999999999999999998753 379998775
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=81.98 E-value=0.52 Score=38.96 Aligned_cols=32 Identities=13% Similarity=0.075 Sum_probs=26.9
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
+|.|||.|..|+.+|..++ .|+ +|+.+|.++.
T Consensus 2 kI~ViGlG~vGl~~a~~~a-~g~---~V~g~Din~~ 33 (196)
T d1dlja2 2 KIAVAGSGYVGLSLGVLLS-LQN---EVTIVDILPS 33 (196)
T ss_dssp EEEEECCSHHHHHHHHHHT-TTS---EEEEECSCHH
T ss_pred EEEEECCChhHHHHHHHHH-CCC---cEEEEECCHH
Confidence 5999999999999998775 576 7999997653
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.66 E-value=0.74 Score=37.01 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=31.4
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccCC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPEN 240 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~~ 240 (489)
...+++|+|+|+|.+|+-++..++..|. +|.++++.+
T Consensus 24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~ 61 (171)
T d1pl8a2 24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA 61 (171)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence 4567899999999999999999999998 577776553
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.55 E-value=0.86 Score=36.49 Aligned_cols=37 Identities=24% Similarity=0.124 Sum_probs=32.4
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
++.+++|+|+|+|.+|+-.++.++..|.++.++.+.+
T Consensus 28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~ 64 (168)
T d1uufa2 28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE 64 (168)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence 5678999999999999999999999999988776654
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.51 E-value=0.73 Score=36.77 Aligned_cols=33 Identities=15% Similarity=0.273 Sum_probs=29.0
Q ss_pred CCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 51 NREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 51 ~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+++|-|||-|.-|...|++|.++|+ +|.++|++
T Consensus 1 M~kIg~IGlG~MG~~iA~~L~~~g~---~v~~~d~~ 33 (162)
T d3cuma2 1 MKQIAFIGLGHMGAPMATNLLKAGY---LLNVFDLV 33 (162)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHTTC---EEEEECSS
T ss_pred CCEEEEEEEHHHHHHHHHHHHHCCC---eEEEEECc
Confidence 3579999999999999999999988 68887765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=81.18 E-value=0.88 Score=37.35 Aligned_cols=35 Identities=31% Similarity=0.326 Sum_probs=31.8
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG-~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.+|+++|.| +|-+|.++|..|.+.|.+|+++.|..
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 678999998 68999999999999999999998874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.06 E-value=0.72 Score=37.34 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=29.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEA 87 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~ 87 (489)
....|+|+|+|+.|+.++..++..|. .+|+.+|.++
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~--~~Vi~~d~~~ 62 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGA--SRIIGVGTHK 62 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTC--SEEEEECSCG
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCC--ceeeccCChH
Confidence 34579999999999999999999885 3688877653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.79 E-value=1.6 Score=34.99 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=30.5
Q ss_pred hcCCCcEEEECC-CHHHHHHHHHHHhCCCcEEEEccC
Q 011267 204 LEKAKKVVVVGG-GYIGMEVAAAAVGWKLDTTIIFPE 239 (489)
Q Consensus 204 ~~~~~~vvViG~-G~~g~e~A~~l~~~g~~V~lv~~~ 239 (489)
++++++|+|.|+ |.+|.-+.+.++..|.+|..+.++
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~ 62 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGT 62 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCEEEEEeccccccccccccccccCccccccccc
Confidence 457889999996 999999999999999998777654
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=80.78 E-value=0.25 Score=37.89 Aligned_cols=37 Identities=14% Similarity=-0.022 Sum_probs=26.2
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHc-CCCCCcEEEEcCCCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEH-GMADGRLCIVSKEAY 88 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~-g~~~~~V~li~~~~~ 88 (489)
++++|+|+|+|-+|.+.+.++.+. ++ .-+..+|.++.
T Consensus 2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~--~iv~fiDdd~~ 39 (126)
T d2dt5a2 2 RKWGLCIVGMGRLGSALADYPGFGESF--ELRGFFDVDPE 39 (126)
T ss_dssp SCEEEEEECCSHHHHHHHHCSCCCSSE--EEEEEEESCTT
T ss_pred CCceEEEEcCCHHHHHHHHhHhhcCCc--EEEEEEeCchH
Confidence 456899999999999888776533 22 13567776654
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.77 E-value=0.81 Score=36.93 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=27.5
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
...+|+|+|+|+.|+.++.-++..|.. .|++.+..
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~--~v~~~~~~ 62 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGAS--IIIAVDIV 62 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCS--EEEEEESC
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccc--eeeeeccH
Confidence 456799999999999999999888762 45565543
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.77 E-value=0.82 Score=37.89 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=31.2
Q ss_pred CCcEEEEC-CCHHHHHHHHHHHhCCCcEEEEccCCc
Q 011267 207 AKKVVVVG-GGYIGMEVAAAAVGWKLDTTIIFPENH 241 (489)
Q Consensus 207 ~~~vvViG-~G~~g~e~A~~l~~~g~~V~lv~~~~~ 241 (489)
-++|+|+| .|.+|..++..|.+.|.+|+++.|.+.
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~ 38 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS 38 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence 47899999 499999999999999999999988754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=80.68 E-value=1.2 Score=36.04 Aligned_cols=83 Identities=12% Similarity=0.009 Sum_probs=51.2
Q ss_pred hcCCCcEEEECCCHHHHHHHHHHHhCCCc-EEEEccCCcchhhhhCHHHHHHHHHHHHhcCcEEEEcCceEEEEEeCCCC
Q 011267 204 LEKAKKVVVVGGGYIGMEVAAAAVGWKLD-TTIIFPENHLLQRLFTPSLAQRYEQLYQQNGVKFVKVGASIKNLEAGSDG 282 (489)
Q Consensus 204 ~~~~~~vvViG~G~~g~e~A~~l~~~g~~-V~lv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~~~~~~~~v~~i~~~~~~ 282 (489)
++.+++|+|+|+|.+|+-.++.++..|.+ |.+.+..+.- .+..++.|..... +..- .+.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-------------~~~a~~~Ga~~~i-~~~~------~~~ 85 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK-------------FPKAKALGATDCL-NPRE------LDK 85 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG-------------HHHHHHTTCSEEE-CGGG------CSS
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH-------------HHHHHHhCCCccc-CCcc------chh
Confidence 45788999999999999999999999985 5566554321 1345667765444 3211 111
Q ss_pred cEEE-EEeCCCcEEEcCEEEEccCCCC
Q 011267 283 RVAA-VKLEDGSTIDADTIVIGIGAKP 308 (489)
Q Consensus 283 ~v~~-v~~~~g~~i~aD~vi~a~G~~p 308 (489)
.+.. ....++. -+|.++-++|...
T Consensus 86 ~~~~~~~~~~~~--G~d~vie~~G~~~ 110 (174)
T d1e3ia2 86 PVQDVITELTAG--GVDYSLDCAGTAQ 110 (174)
T ss_dssp CHHHHHHHHHTS--CBSEEEESSCCHH
T ss_pred hhhhhHhhhhcC--CCcEEEEecccch
Confidence 1000 0011221 4699999999754
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=80.62 E-value=0.81 Score=36.44 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=30.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-cEEEEccC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKL-DTTIIFPE 239 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~-~V~lv~~~ 239 (489)
..++++|||+|-+|..++..|...|. +++++.|.
T Consensus 23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt 57 (159)
T d1gpja2 23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT 57 (159)
T ss_dssp TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence 57899999999999999999999997 58888765
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=80.60 E-value=0.97 Score=36.82 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=31.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEccCC
Q 011267 206 KAKKVVVVGGGYIGMEVAAAAVGWKLDTTIIFPEN 240 (489)
Q Consensus 206 ~~~~vvViG~G~~g~e~A~~l~~~g~~V~lv~~~~ 240 (489)
.++++.|||-|.+|.++|..+...|.+|..+.+..
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeeccccccccccccc
Confidence 46889999999999999999999999999987653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=80.57 E-value=0.93 Score=36.27 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=27.4
Q ss_pred CCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 50 ENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 50 ~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
....|+|+|+|+.|+.++.-++..|. ++++++..
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga---~~i~~~~~ 63 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGA---HVVAFTTS 63 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTC---EEEEEESS
T ss_pred CCCEEEEeccchHHHHHHHHhhcccc---cchhhccc
Confidence 45679999999999999988888775 56677654
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=80.17 E-value=0.76 Score=36.55 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=32.6
Q ss_pred CCCCcEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCCCC
Q 011267 49 NENREFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKEAY 88 (489)
Q Consensus 49 ~~~~~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~~~ 88 (489)
...+.+||+|=|..|-.+|.+|+..|. +|++.|.+|.
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg~Ga---~V~V~E~DPi 57 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKGLGA---RVYITEIDPI 57 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHHTC---EEEEECSCHH
T ss_pred ecCCEEEEecccccchhHHHHHHhCCC---EEEEEecCch
Confidence 356899999999999999999999975 7999998763
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=80.14 E-value=0.73 Score=42.58 Aligned_cols=34 Identities=21% Similarity=0.324 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHhCC-CcEEEEccCCcc
Q 011267 209 KVVVVGGGYIGMEVAAAAVGWK-LDTTIIFPENHL 242 (489)
Q Consensus 209 ~vvViG~G~~g~e~A~~l~~~g-~~V~lv~~~~~~ 242 (489)
.++|||+|..|+-+|..|++.+ .+|.++|+++..
T Consensus 19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~ 53 (385)
T d1cf3a1 19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGSYE 53 (385)
T ss_dssp EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCC
T ss_pred EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCC
Confidence 6899999999999999999876 799999998643
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=80.07 E-value=0.95 Score=35.55 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=26.8
Q ss_pred cEEEEcCchHHHHHHHHHHHcCCCCCcEEEEcCC
Q 011267 53 EFVIVGGGNAAGYAARTFVEHGMADGRLCIVSKE 86 (489)
Q Consensus 53 ~vvIIGgG~AGl~aA~~L~~~g~~~~~V~li~~~ 86 (489)
+|-|||.|..|...|..|+++|+ +|++.++.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~~g~---~v~~~~~~ 32 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRSRGV---EVVTSLEG 32 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTC---EEEECCTT
T ss_pred EEEEEcHHHHHHHHHHHHHHCCC---eEEEEcCc
Confidence 68999999999999999999987 57776543
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