Citrus Sinensis ID: 011270

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49

MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

ccEEEEEcccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccEEHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccEEEEEEEcccccccccccEEEEEccccccccccccEEEcccccccccEEEEEEEccccHHHHHHHHHHccccccccccccEEEEEccccccccccccccEEEEEEcccccccHHHHHHHHHHHHcccccccccEEEEEEEEccccHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEcccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccc

cccEEEcccccHHHHHHHHHHHHHHHHHcHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEcccccEEcccEEEEEEccccccccccccEEEccccccccEEEEEEEEccHHHHHHHHHHccccccccccccccEEEEEcccccccHHHHcccEEEEEEEHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEccccccHHHHHHccccccccccccEEEEEEEEEcccccHHHHcccccHHHHHccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccccccccccEccEEEccccccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccccccccccEEEEEEEEccc

mwrwqktgRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIElilpkhaglkftptsvifmkipsiskfqwhsfsitssssvddqTMSLIVKCDGEWTSSLYQMIHAEldsdadqmrcipvaiegpygpatmdFLRYDSLLLVAGGIGITPFLSILQEIASAQsnrkyrfpskVQLIYVIKSSQEICLLNsispllsnqqskkWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVrfgtqsnyavNGLESLIWMAALVGITSILFVIFLISLNHifvpvekklpseklaapsekvvskektpswVADLIILSSFIIAITGSTLMAILLRWRRlkkqtppvslnqgkavqvlgpieeeheinfggrpnfEEIFSELEketagsdigvlvcgpesmkesVAKTSQRKSQCFMmnankdkpyfnfhslnftf

MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITssssvddqTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAqsnrkyrfpSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVtqeeqssvtvREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKlpseklaapsekvvskektpswVADLIILSSFIIAITGSTLMAILLRWRRLKKqtppvslnqgkaVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYThhlyiiflifflfhAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHsfsitssssVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNANKDKPYFNFHSLNFTF

*WRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSF**************LIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVE*********************PSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSEL***TAGSDIGVLVC*****************************YFNF*******

MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQM**************IPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSN**YRFPSKVQLIYVIKSSQEICLLNSISP*********WHLTLKVFVTQEEQSSVTVREVLNDLSLV****************ESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRW************************EEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQ*****ANKDKPYFNFHSLNFTF

MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEK*************TPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPES***********KSQCFMMNANKDKPYFNFHSLNFTF

MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSEKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTP*******KAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQ*F****NKDKPYFNFHSLNFTF

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ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		489	2.2.26 [Sep-21-2011]
Q8VY13		728	Ferric reduction oxidase	yes	no	0.977	0.656	0.508	1e-137
F4I4K7		717	Ferric reduction oxidase	no	no	0.865	0.589	0.370	4e-78
Q9LMM2		704	Probable ferric reduction	no	no	0.889	0.617	0.353	2e-77
Q8W110		699	Ferric reduction oxidase	no	no	0.871	0.609	0.337	4e-72
Q9FLW2		707	Ferric reduction oxidase	no	no	0.871	0.602	0.333	6e-72
P92949		725	Ferric reduction oxidase	no	no	0.873	0.588	0.324	3e-71
Q3KTM0		747	Ferric reduction oxidase	no	no	0.922	0.603	0.324	6e-68
Q8RWS6		738	Ferric reduction oxidase	no	no	0.934	0.619	0.328	1e-66
P04839		570	Cytochrome b-245 heavy ch	yes	no	0.568	0.487	0.259	3e-27
Q61093		570	Cytochrome b-245 heavy ch	yes	no	0.568	0.487	0.253	1e-26

>sp\|Q8VY13\|FRO8_ARATH Ferric reduction oxidase 8, mitochondrial OS=Arabidopsis thaliana GN=FRO8 PE=2 SV=1	Back alignment and function desciption

 Score =  487 bits (1253), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 260/511 (50%), Positives = 350/511 (68%), Gaps = 33/511 (6%)

Query: 1   MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGD 60
           +W+WQ+TGR+Y+AG I+LVTGL+MWITSLPQIRRK FE FYYTHHLYI+FL+ FLFHAGD
Sbjct: 227 IWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEVFYYTHHLYIVFLVAFLFHAGD 286

Query: 61  RHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIF 120
           RHFY V  G+FLFGLDK+LR +QSR E+CILSA +F  KAIEL+LPK   L + P+S IF
Sbjct: 287 RHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCKAIELVLPKDPMLNYAPSSFIF 346

Query: 121 MKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIP 180
           + IP +S+FQWH FSI SSSSVD  ++S+++KC+G+WT+S+Y  I    + + +++  I 
Sbjct: 347 LNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTNSVYNKIEEAANCE-NKINNII 405

Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240
           V +EGPYGPA++DFLRYD+L LVAGGIGITPFLSIL+E+AS     + + P +VQL++ +
Sbjct: 406 VRVEGPYGPASVDFLRYDNLFLVAGGIGITPFLSILKELASKN---RLKSPKRVQLVFAV 462

Query: 241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS---VTVREVLNDLSLVRAVRF 297
           ++ Q++ +L  I+ ++ N      +L LKVFVTQE++ S    T++E L   S V+++  
Sbjct: 463 RTFQDLNMLLPIASIIFNPIYNL-NLKLKVFVTQEKKPSNGTTTLQEFLAQ-SQVQSIHL 520

Query: 298 GTQSNYA---VNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSE--KLAAPS 352
           GT  +Y+   + G ES  W+A LV IT + F+ FLI L+H F+P E K  S   KLAA  
Sbjct: 521 GTDEDYSRFPIRGPESFRWLATLVLITVLTFLGFLIGLSHFFIPSEHKNHSGVMKLAASG 580

Query: 353 EKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVS----------- 401
               +KEK PSWV DLII+ S++IAI+     A +L+ RR  K+ P +S           
Sbjct: 581 AMKTAKEKVPSWVPDLIIIVSYVIAISVGGFAATILQRRRKHKEAPRMSKEVVIKPEERN 640

Query: 402 LNQGKAVQVLGPIEEEHEINFGGRPNFEEIFSELEKETAG-SDIGVLVCGPESMKESVAK 460
             + K +    PI EEHEI+ G RP  EEI SE EK   G S +GVLVCGPES+KE+VA 
Sbjct: 641 FTELKPI----PITEEHEIHIGERPKLEEIMSEFEKNLRGWSSVGVLVCGPESVKEAVAS 696

Query: 461 TSQRKSQCFM---MNANKDKPYFNFHSLNFT 488
             ++  QCF    +  ++ K   NFHSLNF 
Sbjct: 697 MCRQWPQCFGVEDLRRSRMKMNLNFHSLNFN 727

Ferric chelate reductase probably involved in iron reduction in leaf veins for transport. May participate in the transport of electrons to a Fe(3+) ion via FAD and heme intermediates.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 6EC: .EC: 1EC: .EC: 7

>sp\|F4I4K7\|FRO3_ARATH Ferric reduction oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=FRO3 PE=2 SV=1	Back alignment and function description

>sp\|Q9LMM2\|FRO1_ARATH Probable ferric reduction oxidase 1 OS=Arabidopsis thaliana GN=FRO1 PE=2 SV=1	Back alignment and function description

>sp\|Q8W110\|FRO4_ARATH Ferric reduction oxidase 4 OS=Arabidopsis thaliana GN=FRO4 PE=2 SV=1	Back alignment and function description

>sp\|Q9FLW2\|FRO5_ARATH Ferric reduction oxidase 5 OS=Arabidopsis thaliana GN=FRO5 PE=2 SV=1	Back alignment and function description

>sp\|P92949\|FRO2_ARATH Ferric reduction oxidase 2 OS=Arabidopsis thaliana GN=FRO2 PE=1 SV=2	Back alignment and function description

>sp\|Q3KTM0\|FRO7_ARATH Ferric reduction oxidase 7, chloroplastic OS=Arabidopsis thaliana GN=FRO7 PE=2 SV=1	Back alignment and function description

>sp\|Q8RWS6\|FRO6_ARATH Ferric reduction oxidase 6 OS=Arabidopsis thaliana GN=FRO6 PE=2 SV=1	Back alignment and function description

>sp\|P04839\|CY24B_HUMAN Cytochrome b-245 heavy chain OS=Homo sapiens GN=CYBB PE=1 SV=2	Back alignment and function description

>sp\|Q61093\|CY24B_MOUSE Cytochrome b-245 heavy chain OS=Mus musculus GN=Cybb PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		489
255540531		726	ferric-chelate reductase, putative [Rici	0.991	0.668	0.686	0.0
225456909		703	PREDICTED: ferric reduction oxidase 8, m	0.971	0.675	0.657	0.0
224133654		722	predicted protein [Populus trichocarpa]	0.993	0.673	0.676	0.0
224119412		743	predicted protein [Populus trichocarpa]	0.997	0.656	0.646	0.0
356562684		711	PREDICTED: uncharacterized protein LOC10	0.963	0.662	0.591	1e-172
449523762		716	PREDICTED: ferric reduction oxidase 8, m	0.977	0.667	0.578	1e-163
449445770		716	PREDICTED: ferric reduction oxidase 8, m	0.977	0.667	0.578	1e-163
22327681		728	ferric reduction oxidase 8 [Arabidopsis	0.977	0.656	0.508	1e-135
297792309		728	ATFRO8/FRO8 [Arabidopsis lyrata subsp. l	0.985	0.662	0.510	1e-134
9759018		713	FRO1 and FRO2-like protein [Arabidopsis	0.950	0.652	0.497	1e-130

>gi\|255540531\|ref\|XP_002511330.1\| ferric-chelate reductase, putative [Ricinus communis] gi\|223550445\|gb\|EEF51932.1\| ferric-chelate reductase, putative [Ricinus communis]	Back alignment and taxonomy information

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/494 (68%), Positives = 415/494 (84%), Gaps = 9/494 (1%)

Query: 3   RWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRH 62
           RWQKTGRIYLAGE+ALV GL +WITSLPQIRRK+FE FYYTHHLY++FLIFFLFHAGDRH
Sbjct: 233 RWQKTGRIYLAGEMALVAGLAIWITSLPQIRRKRFEIFYYTHHLYVVFLIFFLFHAGDRH 292

Query: 63  FYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMK 122
           FYMVF GIFLFGLDKLLR +QS+P+TCILSAR+FP+KA+ELILPK   LK+TPTSVI MK
Sbjct: 293 FYMVFPGIFLFGLDKLLRIVQSKPDTCILSARLFPNKAVELILPKDPSLKYTPTSVIHMK 352

Query: 123 IPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIPVA 182
           IPSISKFQWHSFSITSSS++D++T+SLI++  G WTSSLY MI AELDS+ADQM CIP A
Sbjct: 353 IPSISKFQWHSFSITSSSNIDERTISLIIRGTGGWTSSLYNMIQAELDSNADQMSCIPTA 412

Query: 183 IEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQ-SNRKYRFPSKVQLIYVIK 241
           I+GPYGPA++DFLRYDSLLL+AGGIGITPFLSIL+EIAS Q S+R YR P ++QLI+VIK
Sbjct: 413 IQGPYGPASVDFLRYDSLLLIAGGIGITPFLSILKEIASLQRSSRSYRLPEQIQLIHVIK 472

Query: 242 SSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQ- 300
           +SQ+ICLLNSISPLL NQ SK+  L LKVFVTQE++++ T+RE+LNDLSLV+ V F T+ 
Sbjct: 473 NSQDICLLNSISPLLLNQSSKQLRLKLKVFVTQEQKNNATLRELLNDLSLVQTVNFSTKC 532

Query: 301 SNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKK-LPSEKLAAPSEKVVSKE 359
           SNYA++GLE+ +WMAA+  +TSI+F++FL+  NH+F P+EKK   S K+A   EK V+KE
Sbjct: 533 SNYAIHGLETPLWMAAITALTSIVFLVFLMCFNHLFDPIEKKSAASVKMAVRPEKKVAKE 592

Query: 360 KTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQG-----KAVQVLGPI 414
           KTPS + D+++LSSFIIA+T ST +AI+LRW+RLKK  P VS  QG      ++++ G  
Sbjct: 593 KTPSSIVDILLLSSFIIAVTCSTFIAIILRWKRLKKDIPSVSQRQGIFLEPSSMELRGS- 651

Query: 415 EEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNAN 474
            EE EI+FGGRPNF++IFS+   ET GSD+GVLVCGPE+MKESVA     KSQ F + A 
Sbjct: 652 REEQEIHFGGRPNFQDIFSKFTNETVGSDVGVLVCGPETMKESVASFCHLKSQGFNVGAE 711

Query: 475 KDKPYFNFHSLNFT 488
           K KPYF+FHSL+F+
Sbjct: 712 KKKPYFSFHSLSFS 725

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225456909\|ref\|XP_002277760.1\| PREDICTED: ferric reduction oxidase 8, mitochondrial [Vitis vinifera] gi\|297733716\|emb\|CBI14963.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224133654\|ref\|XP_002321628.1\| predicted protein [Populus trichocarpa] gi\|222868624\|gb\|EEF05755.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224119412\|ref\|XP_002318065.1\| predicted protein [Populus trichocarpa] gi\|222858738\|gb\|EEE96285.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|356562684\|ref\|XP_003549599.1\| PREDICTED: uncharacterized protein LOC100816560 [Glycine max]	Back alignment and taxonomy information

>gi\|449523762\|ref\|XP_004168892.1\| PREDICTED: ferric reduction oxidase 8, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449445770\|ref\|XP_004140645.1\| PREDICTED: ferric reduction oxidase 8, mitochondrial-like [Cucumis sativus]	Back alignment and taxonomy information

>gi|22327681|ref|NP_199827.2| ferric reduction oxidase 8 [Arabidopsis thaliana] gi|75161398|sp|Q8VY13.1|FRO8_ARATH RecName: Full=Ferric reduction oxidase 8, mitochondrial; Short=AtFRO8; AltName: Full=Ferric-chelate reductase 8; Flags: Precursor gi|18377668|gb|AAL66984.1| putative FRO1 and FRO2 protein [Arabidopsis thaliana] gi|27754744|gb|AAO22815.1| putative FRO1 and FRO2 protein [Arabidopsis thaliana] gi|332008522|gb|AED95905.1| ferric reduction oxidase 8 [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|297792309\|ref\|XP_002864039.1\| ATFRO8/FRO8 [Arabidopsis lyrata subsp. lyrata] gi\|297309874\|gb\|EFH40298.1\| ATFRO8/FRO8 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|9759018\|dbj\|BAB09387.1\| FRO1 and FRO2-like protein [Arabidopsis thaliana]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		489
TAIR\|locus:2157697		728	FRO8 "ferric reduction oxidase	0.983	0.660	0.482	6.4e-115
TAIR\|locus:2025366		704	FRO1 "AT1G01590" [Arabidopsis	0.885	0.615	0.328	1.8e-64
TAIR\|locus:2178677		699	FRO4 "ferric reduction oxidase	0.664	0.464	0.346	2.9e-62
TAIR\|locus:2025351		725	FRO2 "AT1G01580" [Arabidopsis	0.895	0.604	0.300	6.4e-60
TAIR\|locus:2157032		747	FRO7 "ferric reduction oxidase	0.940	0.615	0.305	7e-54
TAIR\|locus:2157027		738	FRO6 "ferric reduction oxidase	0.948	0.628	0.305	8e-53
UNIPROTKB\|F5GWU5		303	CYBB "Cytochrome b-245 heavy c	0.449	0.726	0.255	3.2e-27
UNIPROTKB\|F1NTW0		566	CYBB "Uncharacterized protein"	0.308	0.266	0.311	1.4e-25
ZFIN\|ZDB-GENE-040426-1380		571	cybb "cytochrome b-245, beta p	0.417	0.357	0.293	1.5e-25
UNIPROTKB\|F5GWD2		538	CYBB "Cytochrome b-245 heavy c	0.449	0.408	0.255	1.5e-24

TAIR\|locus:2157697 FRO8 "ferric reduction oxidase 8" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
 Identities = 244/506 (48%), Positives = 331/506 (65%)

Query:     1 MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTXXXXXXXXXXXXXXAGD 60
             +W+WQ+TGR+Y+AG I+LVTGL+MWITSLPQIRRK FE FYYT              AGD
Sbjct:   227 IWKWQRTGRVYVAGLISLVTGLLMWITSLPQIRRKNFEVFYYTHHLYIVFLVAFLFHAGD 286

Query:    61 RHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIF 120
             RHFY V  G+FLFGLDK+LR +QSR E+CILSA +F  KAIEL+LPK   L + P+S IF
Sbjct:   287 RHFYWVLPGMFLFGLDKILRIVQSRSESCILSANLFSCKAIELVLPKDPMLNYAPSSFIF 346

Query:   121 MKIPSISKFQWHXXXXXXXXXVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIP 180
             + IP +S+FQWH         VD  ++S+++KC+G+WT+S+Y  I    + + +++  I 
Sbjct:   347 LNIPLVSRFQWHPFSIISSSSVDKHSLSIMMKCEGDWTNSVYNKIEEAANCE-NKINNII 405

Query:   181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240
             V +EGPYGPA++DFLRYD+L LVAGGIGITPFLSIL+E+AS   NR  + P +VQL++ +
Sbjct:   406 VRVEGPYGPASVDFLRYDNLFLVAGGIGITPFLSILKELAS--KNR-LKSPKRVQLVFAV 462

Query:   241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSS---VTVREVLNDLSLVRAVRF 297
             ++ Q++ +L  I+ ++ N      +L LKVFVTQE++ S    T++E L   S V+++  
Sbjct:   463 RTFQDLNMLLPIASIIFNP-IYNLNLKLKVFVTQEKKPSNGTTTLQEFLAQ-SQVQSIHL 520

Query:   298 GTQSNYA---VNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPSE--KLAAPS 352
             GT  +Y+   + G ES  W+A LV IT + F+ FLI L+H F+P E K  S   KLAA  
Sbjct:   521 GTDEDYSRFPIRGPESFRWLATLVLITVLTFLGFLIGLSHFFIPSEHKNHSGVMKLAASG 580

Query:   353 EKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLN-----QGKA 407
                 +KEK PSWV DLII+ S++IAI+     A +L+ RR  K+ P +S       + + 
Sbjct:   581 AMKTAKEKVPSWVPDLIIIVSYVIAISVGGFAATILQRRRKHKEAPRMSKEVVIKPEERN 640

Query:   408 VQVLGPIE--EEHEINFGGRPNFEEIFSELEKETAG-SDIGVLVCGPESMKESVAKTSQR 464
                L PI   EEHEI+ G RP  EEI SE EK   G S +GVLVCGPES+KE+VA   ++
Sbjct:   641 FTELKPIPITEEHEIHIGERPKLEEIMSEFEKNLRGWSSVGVLVCGPESVKEAVASMCRQ 700

Query:   465 KSQCFM---MNANKDKPYFNFHSLNF 487
               QCF    +  ++ K   NFHSLNF
Sbjct:   701 WPQCFGVEDLRRSRMKMNLNFHSLNF 726

GO:0005506 "iron ion binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA;ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0000293 "ferric-chelate reductase activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

TAIR\|locus:2025366 FRO1 "AT1G01590" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2178677 FRO4 "ferric reduction oxidase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2025351 FRO2 "AT1G01580" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157032 FRO7 "ferric reduction oxidase 7" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2157027 FRO6 "ferric reduction oxidase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GWU5 CYBB "Cytochrome b-245 heavy chain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NTW0 CYBB "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1380 cybb "cytochrome b-245, beta polypeptide (chronic granulomatous disease)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F5GWD2 CYBB "Cytochrome b-245 heavy chain" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VY13	FRO8_ARATH	1, ., 1, 6, ., 1, ., 7	0.5088	0.9775	0.6565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.16.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00015996001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (692 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		489
PLN02844		722	PLN02844, PLN02844, oxidoreductase/ferric-chelate	0.0
PLN02292		702	PLN02292, PLN02292, ferric-chelate reductase	1e-103
PLN02631		699	PLN02631, PLN02631, ferric-chelate reductase	6e-82
cd06186		210	cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NO	1e-38
pfam08022		103	pfam08022, FAD_binding_8, FAD-binding domain	9e-20
cd00322		223	cd00322, FNR_like, Ferredoxin reductase (FNR), an	1e-16
cd06198		216	cd06198, FNR_like_3, NAD(P) binding domain of ferr	1e-14
COG1018		266	COG1018, Hmp, Flavodoxin reductases (ferredoxin-NA	6e-09
cd06212		232	cd06212, monooxygenase_like, The oxygenase reducta	1e-08
pfam08030		149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	2e-08
cd06216		243	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur bi	4e-08
pfam01794		122	pfam01794, Ferric_reduct, Ferric reductase like tr	4e-07
cd06184		247	cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)	5e-07
COG4097		438	COG4097, COG4097, Predicted ferric reductase [Inor	8e-07
cd06209		228	cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reduc	1e-06
cd06190		232	cd06190, T4MO_e_transfer_like, Toluene-4-monoxygen	4e-06
PRK00054		250	PRK00054, PRK00054, dihydroorotate dehydrogenase e	4e-06
cd06187		224	cd06187, O2ase_reductase_like, The oxygenase reduc	4e-06
COG0543		252	COG0543, UbiB, 2-polyprenylphenol hydroxylase and	6e-06
cd06217		235	cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur bi	1e-05
cd06183		234	cd06183, cyt_b5_reduct_like, Cytochrome b5 reducta	2e-05
cd06221		253	cd06221, sulfite_reductase_like, Anaerobic sulfite	2e-05
pfam08030		149	pfam08030, NAD_binding_6, Ferric reductase NAD bin	3e-05
cd06185		211	cd06185, PDR_like, Phthalate dioxygenase reductase	1e-04
cd06191		231	cd06191, FNR_iron_sulfur_binding, Iron-sulfur bind	2e-04
pfam00175		106	pfam00175, NAD_binding_1, Oxidoreductase NAD-bindi	3e-04
PRK08345		289	PRK08345, PRK08345, cytochrome-c3 hydrogenase subu	3e-04
cd06215		231	cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur bi	3e-04
cd06189		224	cd06189, flavin_oxioreductase, NAD(P)H dependent f	6e-04
cd06220		233	cd06220, DHOD_e_trans_like2, FAD/NAD binding domai	0.001
cd06211		238	cd06211, phenol_2-monooxygenase_like, Phenol 2-mon	0.001
PRK13289		399	PRK13289, PRK13289, bifunctional nitric oxide diox	0.001
cd06197		220	cd06197, FNR_like_2, FAD/NAD(P) binding domain of	0.004
cd06192		243	cd06192, DHOD_e_trans_like, FAD/NAD binding domain	0.004

>gnl\|CDD\|215453 PLN02844, PLN02844, oxidoreductase/ferric-chelate reductase	Back alignment and domain information

 Score =  803 bits (2075), Expect = 0.0
 Identities = 352/496 (70%), Positives = 413/496 (83%), Gaps = 9/496 (1%)

Query: 1   MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGD 60
           +W+WQKTGRIYLAGEIALVTGLV+WITSLPQIRRK+FE FYYTHHLYI+FLIFFLFHAGD
Sbjct: 227 IWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGD 286

Query: 61  RHFYMVFGGIFLFGLDKLLRFIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIF 120
           RHFYMVF GIFLFGLDKLLR +QSRPETCILSAR+FP KAIEL+LPK  GLK+ PTSVIF
Sbjct: 287 RHFYMVFPGIFLFGLDKLLRIVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSVIF 346

Query: 121 MKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSSLYQMIHAELDSDADQMRCIP 180
           MKIPSIS+FQWH FSITSSS++DD TMS+I+KC+G WT+SLY  I AELDS+ +QM CIP
Sbjct: 347 MKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNSLYNKIQAELDSETNQMNCIP 406

Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI 240
           VAIEGPYGPA++DFLRYDSLLLVAGGIGITPFLSIL+EIAS  S+R YRFP +VQLIYV+
Sbjct: 407 VAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQSSSR-YRFPKRVQLIYVV 465

Query: 241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQ 300
           K SQ+ICLLN IS LL NQ S + +L LKVFVTQEE+ + T+RE+LN  S V+ V F T+
Sbjct: 466 KKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTK 525

Query: 301 -SNYAVNGLESLIWMAALVGITSILFVIFLISLNHIFVPVEKKLPS-EKLAAPSEKVVSK 358
            S YA++GLES +WMAA+V +TSI F++FLI LNHIF+P E K  S  K+AA  E   +K
Sbjct: 526 CSRYAIHGLESFLWMAAMVALTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAK 585

Query: 359 EKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTPPVSLNQGKA-----VQVLGP 413
           EKTPSWV DL+++ SFIIAIT ST +AI+LRWRRLKK+ P VS  QG       ++  GP
Sbjct: 586 EKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIPRVSQKQGIKPEEGSMEKRGP 645

Query: 414 IEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNA 473
           + EEHEI+FGGRPNF++IFS+  KET GSDIGVLVCGPE+MKESVA   + KSQCF +  
Sbjct: 646 VLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGD 705

Query: 474 N-KDKPYFNFHSLNFT 488
           + K K YF+FHSLNFT
Sbjct: 706 DGKRKMYFSFHSLNFT 721

Length = 722

>gnl\|CDD\|215165 PLN02292, PLN02292, ferric-chelate reductase	Back alignment and domain information

>gnl\|CDD\|178238 PLN02631, PLN02631, ferric-chelate reductase	Back alignment and domain information

>gnl\|CDD\|99783 cd06186, NOX_Duox_like_FAD_NADP, NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide	Back alignment and domain information

>gnl\|CDD\|219702 pfam08022, FAD_binding_8, FAD-binding domain	Back alignment and domain information

>gnl\|CDD\|99778 cd00322, FNR_like, Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I	Back alignment and domain information

>gnl\|CDD\|99795 cd06198, FNR_like_3, NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>gnl\|CDD\|223949 COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|99808 cd06212, monooxygenase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>gnl\|CDD\|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain	Back alignment and domain information

>gnl\|CDD\|99812 cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|216705 pfam01794, Ferric_reduct, Ferric reductase like transmembrane component	Back alignment and domain information

>gnl\|CDD\|99781 cd06184, flavohem_like_fad_nad_binding, FAD_NAD(P)H binding domain of flavohemoglobin	Back alignment and domain information

>gnl\|CDD\|226582 COG4097, COG4097, Predicted ferric reductase [Inorganic ion transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|99805 cd06209, BenDO_FAD_NAD, Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	Back alignment and domain information

>gnl\|CDD\|99787 cd06190, T4MO_e_transfer_like, Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system	Back alignment and domain information

>gnl\|CDD\|234601 PRK00054, PRK00054, dihydroorotate dehydrogenase electron transfer subunit; Reviewed	Back alignment and domain information

>gnl\|CDD\|99784 cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	Back alignment and domain information

>gnl\|CDD\|223617 COG0543, UbiB, 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|99813 cd06217, FNR_iron_sulfur_binding_3, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|99780 cd06183, cyt_b5_reduct_like, Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor	Back alignment and domain information

>gnl\|CDD\|99817 cd06221, sulfite_reductase_like, Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases	Back alignment and domain information

>gnl\|CDD\|203841 pfam08030, NAD_binding_6, Ferric reductase NAD binding domain	Back alignment and domain information

>gnl\|CDD\|99782 cd06185, PDR_like, Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	Back alignment and domain information

>gnl\|CDD\|99788 cd06191, FNR_iron_sulfur_binding, Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|215769 pfam00175, NAD_binding_1, Oxidoreductase NAD-binding domain	Back alignment and domain information

>gnl\|CDD\|236247 PRK08345, PRK08345, cytochrome-c3 hydrogenase subunit gamma; Provisional	Back alignment and domain information

>gnl\|CDD\|99811 cd06215, FNR_iron_sulfur_binding_1, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>gnl\|CDD\|99786 cd06189, flavin_oxioreductase, NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins	Back alignment and domain information

>gnl\|CDD\|99816 cd06220, DHOD_e_trans_like2, FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>gnl\|CDD\|99807 cd06211, phenol_2-monooxygenase_like, Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol	Back alignment and domain information

>gnl\|CDD\|237337 PRK13289, PRK13289, bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional	Back alignment and domain information

>gnl\|CDD\|99794 cd06197, FNR_like_2, FAD/NAD(P) binding domain of ferredoxin reductase-like proteins	Back alignment and domain information

>gnl\|CDD\|99789 cd06192, DHOD_e_trans_like, FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		489
PLN02844		722	oxidoreductase/ferric-chelate reductase	100.0
PLN02292		702	ferric-chelate reductase	100.0
PLN02631		699	ferric-chelate reductase	100.0
KOG0039		646	consensus Ferric reductase, NADH/NADPH oxidase and	100.0
COG4097		438	Predicted ferric reductase [Inorganic ion transpor	100.0
cd06186		210	NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyz	100.0
cd06189		224	flavin_oxioreductase NAD(P)H dependent flavin oxid	99.96
cd06212		232	monooxygenase_like The oxygenase reductase FAD/NAD	99.96
cd06197		220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	99.96
cd06215		231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	99.96
cd06216		243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	99.95
cd06210		236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	99.95
cd06198		216	FNR_like_3 NAD(P) binding domain of ferredoxin red	99.95
PRK08051		232	fre FMN reductase; Validated	99.95
cd06217		235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	99.95
cd06190		232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	99.95
cd06191		231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	99.95
cd06195		241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	99.95
cd06213		227	oxygenase_e_transfer_subunit The oxygenase reducta	99.95
cd06187		224	O2ase_reductase_like The oxygenase reductase FAD/N	99.95
cd06211		238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	99.95
cd06184		247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	99.95
cd00322		223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	99.95
PRK11872		340	antC anthranilate dioxygenase reductase; Provision	99.95
cd06188		283	NADH_quinone_reductase Na+-translocating NADH:quin	99.94
cd06209		228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	99.94
cd06214		241	PA_degradation_oxidoreductase_like NAD(P) binding	99.94
PRK10684		332	HCP oxidoreductase, NADH-dependent; Provisional	99.94
PRK07609		339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.94
cd06194		222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	99.94
cd06183		234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	99.94
cd06221		253	sulfite_reductase_like Anaerobic sulfite reductase	99.94
cd06196		218	FNR_like_1 Ferredoxin reductase-like proteins cata	99.94
PRK08345		289	cytochrome-c3 hydrogenase subunit gamma; Provision	99.94
PTZ00274		325	cytochrome b5 reductase; Provisional	99.94
TIGR02160		352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.93
PRK10926		248	ferredoxin-NADP reductase; Provisional	99.93
PLN03116		307	ferredoxin--NADP+ reductase; Provisional	99.93
cd06185		211	PDR_like Phthalate dioxygenase reductase (PDR) is	99.93
COG1018		266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	99.93
cd06208		286	CYPOR_like_FNR These ferredoxin reductases are rel	99.93
PRK08221		263	anaerobic sulfite reductase subunit B; Provisional	99.93
cd06218		246	DHOD_e_trans FAD/NAD binding domain in the electro	99.93
PRK13289		399	bifunctional nitric oxide dioxygenase/dihydropteri	99.93
PLN03115		367	ferredoxin--NADP(+) reductase; Provisional	99.92
cd06192		243	DHOD_e_trans_like FAD/NAD binding domain (electron	99.92
PRK00054		250	dihydroorotate dehydrogenase electron transfer sub	99.92
PRK05464		409	Na(+)-translocating NADH-quinone reductase subunit	99.92
PRK06222		281	ferredoxin-NADP(+) reductase subunit alpha; Review	99.92
cd06219		248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	99.92
PTZ00319		300	NADH-cytochrome B5 reductase; Provisional	99.92
TIGR02911		261	sulfite_red_B sulfite reductase, subunit B. Member	99.92
TIGR01941		405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.92
cd06200		245	SiR_like1 Cytochrome p450- like alpha subunits of	99.91
PRK05802		320	hypothetical protein; Provisional	99.91
cd06182		267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	99.91
PRK05713		312	hypothetical protein; Provisional	99.91
cd06220		233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	99.9
KOG0534		286	consensus NADH-cytochrome b-5 reductase [Coenzyme	99.9
COG0543		252	UbiB 2-polyprenylphenol hydroxylase and related fl	99.9
TIGR03224		411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	99.89
PLN02252		888	nitrate reductase [NADPH]	99.89
cd06201		289	SiR_like2 Cytochrome p450- like alpha subunits of	99.88
PF08030		156	NAD_binding_6: Ferric reductase NAD binding domain	99.88
PRK12778		752	putative bifunctional 2-polyprenylphenol hydroxyla	99.85
PTZ00306		1167	NADH-dependent fumarate reductase; Provisional	99.83
PRK12779		944	putative bifunctional glutamate synthase subunit b	99.83
cd06193		235	siderophore_interacting Siderophore interacting pr	99.83
PRK12775		1006	putative trifunctional 2-polyprenylphenol hydroxyl	99.82
PF08022		105	FAD_binding_8: FAD-binding domain; InterPro: IPR01	99.78
cd06199		360	SiR Cytochrome p450- like alpha subunits of E. col	99.77
TIGR01931		597	cysJ sulfite reductase [NADPH] flavoprotein, alpha	99.75
cd06207		382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	99.73
cd06206		384	bifunctional_CYPOR These bifunctional proteins fus	99.73
cd06203		398	methionine_synthase_red Human methionine synthase	99.7
PRK06214		530	sulfite reductase; Provisional	99.69
PRK10953		600	cysJ sulfite reductase subunit alpha; Provisional	99.68
cd06204		416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	99.66
COG2871		410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.65
cd06202		406	Nitric_oxide_synthase The ferredoxin-reductase (FN	99.59
PF00175		109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	99.43
COG0369		587	CysJ Sulfite reductase, alpha subunit (flavoprotei	99.34
PF00970		99	FAD_binding_6: Oxidoreductase FAD-binding domain;	99.34
PRK06567		1028	putative bifunctional glutamate synthase subunit b	99.33
KOG1158		645	consensus NADP/FAD dependent oxidoreductase [Energ	99.07
KOG3378		385	consensus Globins and related hemoproteins [Energy	99.05
KOG1159		574	consensus NADP-dependent flavoprotein reductase [E	98.69
PF01794		125	Ferric_reduct: Ferric reductase like transmembrane	98.02
COG2375		265	ViuB Siderophore-interacting protein [Inorganic io	96.8
PF08021		117	FAD_binding_9: Siderophore-interacting FAD-binding	95.96
COG2717		209	Predicted membrane protein [Function unknown]	95.38
PRK05419		205	putative sulfite oxidase subunit YedZ; Reviewed	93.58
cd06195		241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	93.05
PRK08051		232	fre FMN reductase; Validated	92.17
PF00175		109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	92.13
cd06188		283	NADH_quinone_reductase Na+-translocating NADH:quin	91.01
cd06184		247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	90.8
cd06213		227	oxygenase_e_transfer_subunit The oxygenase reducta	90.32
cd06209		228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	90.08
cd06215		231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	90.02
cd06189		224	flavin_oxioreductase NAD(P)H dependent flavin oxid	89.42
cd06217		235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	89.37
cd06210		236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	89.3
cd06187		224	O2ase_reductase_like The oxygenase reductase FAD/N	87.97
cd06218		246	DHOD_e_trans FAD/NAD binding domain in the electro	87.85
cd06191		231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	87.72
cd06220		233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	87.62
cd06196		218	FNR_like_1 Ferredoxin reductase-like proteins cata	87.35
TIGR02160		352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	87.19
PRK10684		332	HCP oxidoreductase, NADH-dependent; Provisional	86.96
cd06211		238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	86.69
PRK05713		312	hypothetical protein; Provisional	86.41
PRK11872		340	antC anthranilate dioxygenase reductase; Provision	86.22
cd06216		243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	85.59
cd06190		232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	85.55
cd06194		222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	84.73
COG1018		266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	84.69
cd00322		223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	83.84
PRK05464		409	Na(+)-translocating NADH-quinone reductase subunit	83.16
PRK13289		399	bifunctional nitric oxide dioxygenase/dihydropteri	82.8
PRK07609		339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	82.71
cd06214		241	PA_degradation_oxidoreductase_like NAD(P) binding	82.4
cd06193		235	siderophore_interacting Siderophore interacting pr	81.96
PRK06222		281	ferredoxin-NADP(+) reductase subunit alpha; Review	81.87

>PLN02844 oxidoreductase/ferric-chelate reductase	Back alignment and domain information

Probab=100.00  E-value=6.1e-93  Score=767.54  Aligned_cols=488  Identities=72%  Similarity=1.200  Sum_probs=422.0

Q ss_pred             CceecccCchhhhhHHHHHHHHHHHHhchhHHHhhchhhHHHHhHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHH
Q 011270            1 MWRWQKTGRIYLAGEIALVTGLVMWITSLPQIRRKKFEFFYYTHHLYIIFLIFFLFHAGDRHFYMVFGGIFLFGLDKLLR   80 (489)
Q Consensus         1 ~~~w~~~~~~~~~G~ia~~~~~~m~~~S~~~iRr~~ye~F~~~H~l~~~~~v~~~~H~~~~~~~~~~~~~~l~~~dr~~R   80 (489)
                      +++|.+++..+++|+++++++++|+++|++++||+.||+||++|++++++++++++|+...+.+|++|++++|++||++|
T Consensus       227 ~~~w~~~~~~~~~G~IAlv~l~iL~itSl~~iRR~~YElF~~~H~L~ivflv~~~~H~~~~~~~~v~~~i~L~~~DRllR  306 (722)
T PLN02844        227 IWKWQKTGRIYLAGEIALVTGLVIWITSLPQIRRKRFEIFYYTHHLYIVFLIFFLFHAGDRHFYMVFPGIFLFGLDKLLR  306 (722)
T ss_pred             hhhhccCcchhhhHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHhhhHhhcCcchhhhHHHHHHHHHHHHhh
Confidence            35798899999999999999999999999999999999999999999989999999998877788999999999999999


Q ss_pred             HhhhcCceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeCCCccHH
Q 011270           81 FIQSRPETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCDGEWTSS  160 (489)
Q Consensus        81 ~~r~~~~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~G~~T~~  160 (489)
                      ++++++..++++++.++++.+++++++++.++|+||||++|++|..+++|||||||+|+|..+++.+++.||..|+||++
T Consensus       307 ~~~s~~~~~vvs~~~~~~~~v~l~i~r~~~~~f~PGQfV~L~vp~~s~~q~HPFSIaS~p~~~~~~l~~~IK~~gG~T~~  386 (722)
T PLN02844        307 IVQSRPETCILSARLFPCKAIELVLPKDPGLKYAPTSVIFMKIPSISRFQWHPFSITSSSNIDDHTMSVIIKCEGGWTNS  386 (722)
T ss_pred             eEEEeeeEEEEEEEEecCCEEEEEEECCCCCCcCCCeeEEEEECCCCceeEEEEEeecCCCCCCCeEEEEEEeCCCchHH
Confidence            99987777788899999999999999988899999999999999999999999999998765678999999999999999


Q ss_pred             HHHHHHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEe
Q 011270          161 LYQMIHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVI  240 (489)
Q Consensus       161 L~~~~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~  240 (489)
                      |++.++...+.+.+.....++.|+||||.+..+...++++++||||+||||++|+++++.+++ +.....+++++|+|++
T Consensus       387 L~~~i~~~l~~g~~~~~~~~v~VeGPYG~~s~~~~~~~~lVLIAGGiGITPfLSiLrdl~~~~-~~~~~~~~~V~LIw~v  465 (722)
T PLN02844        387 LYNKIQAELDSETNQMNCIPVAIEGPYGPASVDFLRYDSLLLVAGGIGITPFLSILKEIASQS-SSRYRFPKRVQLIYVV  465 (722)
T ss_pred             HHHHHHhhccCCCCcccceEEEEECCccCCCCCccCCCeEEEEEcCcCHHHHHHHHHHHHhcc-ccccCCCCcEEEEEEE
Confidence            998876332221111122589999999988766677899999999999999999999998743 1222345789999999


Q ss_pred             CCcchhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCC-CCceEEecCCcHHHHHHHHH
Q 011270          241 KSSQEICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGT-QSNYAVNGLESLIWMAALVG  319 (489)
Q Consensus       241 r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~-~~~~~v~g~g~~~~~aav~~  319 (489)
                      |+.+|+.+.+++.+.+.+...+..++++++|+|||+.+....++.+++..+.+.+++++ .+++.+||++++.||+++++
T Consensus       466 R~~~dL~~~del~~~l~~~~~~~~~lkl~iyVTRE~~~~~rl~~~i~~~~~~~~~~~~~~~~~~~i~G~~~~lw~~~~~~  545 (722)
T PLN02844        466 KKSQDICLLNPISSLLLNQSSNQLNLKLKVFVTQEEKPNATLRELLNQFSQVQTVNFSTKCSRYAIHGLESFLWMAAMVA  545 (722)
T ss_pred             CCHHHhhhHHHHHHHhHHhHHHhcCceEEEEECCCCCCCCchhhHhhccchhhhcCCCCCCCceEEeCCCchHHHHHHHH
Confidence            99999999999876554322233588999999999876555566666655556666665 47899999999999999999


Q ss_pred             HHHHHHHHHHhhhceEEecCCCCCcc-ccccCCccccccCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHhhhccCCC
Q 011270          320 ITSILFVIFLISLNHIFVPVEKKLPS-EKLAAPSEKVVSKEKTPSWVADLIILSSFIIAITGSTLMAILLRWRRLKKQTP  398 (489)
Q Consensus       320 ~s~~~f~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (489)
                      +|+++|++++++++|||||+|||++. .+.+.|++++.+++++|+|++++|+++||+++|++|++++++|.|++.+++.|
T Consensus       546 ~s~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (722)
T PLN02844        546 LTSITFLVFLIGLNHIFIPSEHKSHSGVKMAASGEMKTAKEKTPSWVVDLLLIVSFIIAITCSTFVAIILRWRRLKKEIP  625 (722)
T ss_pred             HHHHHHHHHHHHHheEEeccccccccchhcccccccccccCCCchHHHHHHHHHHHHHHheecceEeEeeeccccccCCc
Confidence            99999999999999999999999854 78899999999999999999999999999999999999999998988888887


Q ss_pred             CCCccCCcc-----ccccCCccceeeeeeCCCCChHHHHHHHHhhcCCccEEEEEeCCcchhHHHHHHhhhhchhhhccc
Q 011270          399 PVSLNQGKA-----VQVLGPIEEEHEINFGGRPNFEEIFSELEKETAGSDIGVLVCGPESMKESVAKTSQRKSQCFMMNA  473 (489)
Q Consensus       399 ~~~~~~~~~-----~~~~~~~~~~~~~~~g~RPn~~~i~~~~~~~~~~~~vGV~~CGP~~l~~~v~~~c~~~~~~~~~~~  473 (489)
                      ..+++..-.     .+...++++++++|||+|||+++||+++++++.|++|||+|||||+|+++||++||++|+|++.++
T Consensus       626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~rp~~~~i~~~~~~~~~~~~vgvlv~gp~~~~~~va~~~~~~~~~~~~~~  705 (722)
T PLN02844        626 RVSQKQGIKPEEGSMEKRGPVLEEHEIHFGGRPNFQDIFSKFPKETRGSDIGVLVCGPETMKESVASMCRLKSQCFNVGD  705 (722)
T ss_pred             cccccccCCCCCccccccccccccceeecCCCCCHHHHHHHhhhhccCCceeEEEeCchHHHHHHHHHHHhccccccccc
Confidence            765443322     223456779999999999999999999999999999999999999999999999999999999875


Q ss_pred             C-CCCCceeeecccccC
Q 011270          474 N-KDKPYFNFHSLNFTF  489 (489)
Q Consensus       474 ~-~~~~~~~fhs~~F~~  489 (489)
                      + +.++.|||||+||||
T Consensus       706 ~~~~~~~~~~hs~~f~l  722 (722)
T PLN02844        706 DGKRKMYFSFHSLNFTL  722 (722)
T ss_pred             ccccCCceeeeecccCC
Confidence            4 447999999999997

>PLN02292 ferric-chelate reductase	Back alignment and domain information

>PLN02631 ferric-chelate reductase	Back alignment and domain information

>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]	Back alignment and domain information

>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide	Back alignment and domain information

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins	Back alignment and domain information

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins	Back alignment and domain information

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol	Back alignment and domain information

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>PRK08051 fre FMN reductase; Validated	Back alignment and domain information

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system	Back alignment and domain information

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain	Back alignment and domain information

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	Back alignment and domain information

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	Back alignment and domain information

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol	Back alignment and domain information

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin	Back alignment and domain information

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I	Back alignment and domain information

>PRK11872 antC anthranilate dioxygenase reductase; Provisional	Back alignment and domain information

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain	Back alignment and domain information

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	Back alignment and domain information

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase	Back alignment and domain information

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional	Back alignment and domain information

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	Back alignment and domain information

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain	Back alignment and domain information

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor	Back alignment and domain information

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases	Back alignment and domain information

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional	Back alignment and domain information

>PTZ00274 cytochrome b5 reductase; Provisional	Back alignment and domain information

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit	Back alignment and domain information

>PRK10926 ferredoxin-NADP reductase; Provisional	Back alignment and domain information

>PLN03116 ferredoxin--NADP+ reductase; Provisional	Back alignment and domain information

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster	Back alignment and domain information

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]	Back alignment and domain information

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain	Back alignment and domain information

>PRK08221 anaerobic sulfite reductase subunit B; Provisional	Back alignment and domain information

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	Back alignment and domain information

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional	Back alignment and domain information

>PLN03115 ferredoxin--NADP(+) reductase; Provisional	Back alignment and domain information

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed	Back alignment and domain information

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional	Back alignment and domain information

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed	Back alignment and domain information

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>PTZ00319 NADH-cytochrome B5 reductase; Provisional	Back alignment and domain information

>TIGR02911 sulfite_red_B sulfite reductase, subunit B	Back alignment and domain information

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit	Back alignment and domain information

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E	Back alignment and domain information

>PRK05802 hypothetical protein; Provisional	Back alignment and domain information

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases	Back alignment and domain information

>PRK05713 hypothetical protein; Provisional	Back alignment and domain information

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]	Back alignment and domain information

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]	Back alignment and domain information

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein	Back alignment and domain information

>PLN02252 nitrate reductase [NADPH]	Back alignment and domain information

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E	Back alignment and domain information

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins	Back alignment and domain information

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional	Back alignment and domain information

>PTZ00306 NADH-dependent fumarate reductase; Provisional	Back alignment and domain information

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional	Back alignment and domain information

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	Back alignment and domain information

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional	Back alignment and domain information

>PF08022 FAD_binding_8: FAD-binding domain; InterPro: IPR013112 This FAD binding domain is associated with ferric reductase NAD binding proteins and the heavy chain of Cytochrome b-245	Back alignment and domain information

>cd06199 SiR Cytochrome p450- like alpha subunits of E	Back alignment and domain information

>TIGR01931 cysJ sulfite reductase [NADPH] flavoprotein, alpha-component	Back alignment and domain information

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases	Back alignment and domain information

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)	Back alignment and domain information

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate	Back alignment and domain information

>PRK06214 sulfite reductase; Provisional	Back alignment and domain information

>PRK10953 cysJ sulfite reductase subunit alpha; Provisional	Back alignment and domain information

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases	Back alignment and domain information

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]	Back alignment and domain information

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain	Back alignment and domain information

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes	Back alignment and domain information

>COG0369 CysJ Sulfite reductase, alpha subunit (flavoprotein) [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00970 FAD_binding_6: Oxidoreductase FAD-binding domain; InterPro: IPR008333 These sequences contain an oxidoreductase FAD-binding domain	Back alignment and domain information

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated	Back alignment and domain information

>KOG1158 consensus NADP/FAD dependent oxidoreductase [Energy production and conversion]	Back alignment and domain information

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]	Back alignment and domain information

>KOG1159 consensus NADP-dependent flavoprotein reductase [Energy production and conversion]	Back alignment and domain information

>PF01794 Ferric_reduct: Ferric reductase like transmembrane component; InterPro: IPR013130 This family includes a common region in the transmembrane proteins mammalian cytochrome b-245 heavy chain (gp91-phox), ferric reductase transmembrane component in yeast and respiratory burst oxidase from Arabidopsis thaliana	Back alignment and domain information

>COG2375 ViuB Siderophore-interacting protein [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF08021 FAD_binding_9: Siderophore-interacting FAD-binding domain; InterPro: IPR013113 Proteins in this entry are siderophore-interacting FAD-binding proteins	Back alignment and domain information

>COG2717 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PRK05419 putative sulfite oxidase subunit YedZ; Reviewed	Back alignment and domain information

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	Back alignment and domain information

>PRK08051 fre FMN reductase; Validated	Back alignment and domain information

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes	Back alignment and domain information

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain	Back alignment and domain information

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin	Back alignment and domain information

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons	Back alignment and domain information

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain	Back alignment and domain information

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins	Back alignment and domain information

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol	Back alignment and domain information

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant	Back alignment and domain information

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase	Back alignment and domain information

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain	Back alignment and domain information

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins	Back alignment and domain information

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain	Back alignment and domain information

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit	Back alignment and domain information

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional	Back alignment and domain information

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol	Back alignment and domain information

>PRK05713 hypothetical protein; Provisional	Back alignment and domain information

>PRK11872 antC anthranilate dioxygenase reductase; Provisional	Back alignment and domain information

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	Back alignment and domain information

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system	Back alignment and domain information

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain	Back alignment and domain information

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]	Back alignment and domain information

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I	Back alignment and domain information

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional	Back alignment and domain information

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional	Back alignment and domain information

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated	Back alignment and domain information

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase	Back alignment and domain information

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	Back alignment and domain information

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		489
3a1f_A		186	The Crystal Structure Of Nadph Binding Domain Of Gp		1e-06

>pdb|3A1F|A Chain A, The Crystal Structure Of Nadph Binding Domain Of Gp91(Phox) Length = 186

Back alignment and structure

Iteration: 1

Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 28/112 (25%), Positives = 56/112 (50%), Gaps = 4/112 (3%) Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFP-SKVQLIYV 239 +A++GP+G A+ D Y+ ++LV GIG+TPF SIL+ + N K+ ++ Sbjct: 1 IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWL 60 Query: 240 IKSSQEICLLNSISPLLSNQQSKKWH---LTLKVFVTQEEQSSVTVREVLND 288 + + + LL +Q ++ + L+ +++T ++S V +D Sbjct: 61 CRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHD 112

PyMOL of 3a1f

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		489
3a1f_A		186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	5e-19
3a1f_A		186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	3e-09
1qfj_A		232	Protein (flavin reductase); riboflavin, ferredoxin	2e-09
1tvc_A		250	Methane monooxygenase component C, methane monooxy	3e-09
1krh_A		338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	4e-09
1gvh_A		396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	2e-08
1cqx_A		403	Flavohemoprotein; globin fold, six-stranded antipa	1e-06
2qdx_A		257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	2e-06
2eix_A		243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	7e-06
1fdr_A		248	Flavodoxin reductase; ferredoxin reductase, flavin	8e-06
2pia_A		321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	9e-06
4eh1_A		243	Flavohemoprotein; structural genomics, niaid, nati	2e-05
2bgi_A		272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
2cnd_A		270	NADH-dependent nitrate reductase; nitrate assimila	7e-05
1umk_A		275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	8e-05
3lrx_A		158	Putative hydrogenase; alpha-beta protein, structur	4e-04
4fk8_A		271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	5e-04
3lyu_A		142	Putative hydrogenase; the C-terminal has AN alpha-	5e-04

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186	Back alignment and structure

 Score = 84.0 bits (207), Expect = 5e-19
 Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 4/136 (2%)

Query: 181 VAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRF-PSKVQLIYV 239
           +A++GP+G A+ D   Y+ ++LV  GIG+TPF SIL+ +     N        K+   ++
Sbjct: 1   IAVDGPFGTASEDVFSYEVVMLVGAGIGVTPFASILKSVWYKYCNNATNLKLKKIYFYWL 60

Query: 240 IKSSQEICLLNSISPLLSNQQSKKWH---LTLKVFVTQEEQSSVTVREVLNDLSLVRAVR 296
            + +        +  LL +Q  ++ +   L+  +++T  ++S      V +D        
Sbjct: 61  CRDTHAFEWFADLLQLLESQMQERNNAGFLSYNIYLTGWDESQANHFAVHHDEEKDVITG 120

Query: 297 FGTQSNYAVNGLESLI 312
              ++ Y     ++  
Sbjct: 121 LKQKTLYGRPNWDNEF 136

PyMOL of 3a1f

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens} Length = 186	Back alignment and structure

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 Length = 232	Back alignment and structure

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2 Length = 250	Back alignment and structure

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338	Back alignment and structure

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 Length = 396	Back alignment and structure

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A* Length = 403	Back alignment and structure

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A* Length = 257	Back alignment and structure

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum} Length = 243	Back alignment and structure

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A* Length = 248	Back alignment and structure

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321	Back alignment and structure

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor} Length = 243	Back alignment and structure

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A* Length = 272	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A* Length = 270	Back alignment and structure

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A* Length = 275	Back alignment and structure

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus} Length = 158	Back alignment and structure

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A* Length = 271	Back alignment and structure

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus} Length = 142	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		489
1qfj_A		232	Protein (flavin reductase); riboflavin, ferredoxin	99.96
1tvc_A		250	Methane monooxygenase component C, methane monooxy	99.95
3vo2_A		310	Putative uncharacterized protein; rossmann fold, o	99.95
4g1v_A		399	Flavohemoglobin; three domains: globin fold, antip	99.95
4eh1_A		243	Flavohemoprotein; structural genomics, niaid, nati	99.95
3lo8_A		311	Ferredoxin--NADP reductase; electron transport, ox	99.95
2eix_A		243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	99.95
1fdr_A		248	Flavodoxin reductase; ferredoxin reductase, flavin	99.95
3jqq_A		316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	99.95
4fk8_A		271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	99.94
2r6h_A		290	NADH:ubiquinone oxidoreductase, Na translocating,	99.94
2pia_A		321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.94
1krh_A		338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.94
1umk_A		275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	99.94
1fnb_A		314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	99.94
2qdx_A		257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	99.93
2bmw_A		304	Ferredoxin--NADP reductase; oxidoreductase, flavop	99.93
2cnd_A		270	NADH-dependent nitrate reductase; nitrate assimila	99.93
2bgi_A		272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	99.93
1gvh_A		396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	99.93
2b5o_A		402	FNR, ferredoxin--NADP reductase; complex with FAD,	99.93
1cqx_A		403	Flavohemoprotein; globin fold, six-stranded antipa	99.93
1ep3_B		262	Dihydroorotate dehydrogenase B (PYRK subunit); het	99.92
2rc5_A		314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	99.92
3a1f_A		186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	99.91
1ddg_A		374	Sulfite reductase (NADPH) flavoprotein alpha- comp	99.84
2gpj_A		252	Siderophore-interacting protein; structural genomi	99.78
4dql_A		393	Bifunctional P-450/NADPH-P450 reductase; rossmann	99.77
2qtl_A		539	MSR;, methionine synthase reductase; alpha-beta-al	99.75
1f20_A		435	Nitric-oxide synthase; nitric-xoide synthase, redu	99.73
1tll_A		688	Nitric-oxide synthase, brain; reductase module, FM	99.7
2bpo_A		682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	99.7
3qfs_A		458	CPR, P450R, NADPH--cytochrome P450 reductase; flav	99.68
3qe2_A		618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	99.65
3lrx_A		158	Putative hydrogenase; alpha-beta protein, structur	99.55
3lyu_A		142	Putative hydrogenase; the C-terminal has AN alpha-	99.53
4eh1_A		243	Flavohemoprotein; structural genomics, niaid, nati	92.87
3lyu_A		142	Putative hydrogenase; the C-terminal has AN alpha-	92.38
3lrx_A		158	Putative hydrogenase; alpha-beta protein, structur	91.49
4fk8_A		271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	90.73
1qfj_A		232	Protein (flavin reductase); riboflavin, ferredoxin	90.67
1tvc_A		250	Methane monooxygenase component C, methane monooxy	90.48
2r6h_A		290	NADH:ubiquinone oxidoreductase, Na translocating,	90.47
3jqq_A		316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	89.93
3lo8_A		311	Ferredoxin--NADP reductase; electron transport, ox	89.22
2gpj_A		252	Siderophore-interacting protein; structural genomi	89.19
3vo2_A		310	Putative uncharacterized protein; rossmann fold, o	88.69
1gvh_A		396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	88.51
1cqx_A		403	Flavohemoprotein; globin fold, six-stranded antipa	87.56
2eix_A		243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	87.41
1krh_A		338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	86.54
2qdx_A		257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	86.02
2bmw_A		304	Ferredoxin--NADP reductase; oxidoreductase, flavop	85.94
2b5o_A		402	FNR, ferredoxin--NADP reductase; complex with FAD,	84.68
2bgi_A		272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	84.62
1fdr_A		248	Flavodoxin reductase; ferredoxin reductase, flavin	83.99
1fnb_A		314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	83.84

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1	Back alignment and structure

Probab=99.96  E-value=8.2e-28  Score=230.27  Aligned_cols=205  Identities=14%  Similarity=0.140  Sum_probs=159.2

Q ss_pred             ceeEEEEEEeCCCeEEEEeecCCCCcccCCeEEEEecCCCCCcceeeeEEeecCCCCCCeEEEEEEeC--CCccHHHHHH
Q 011270           87 ETCILSARVFPSKAIELILPKHAGLKFTPTSVIFMKIPSISKFQWHSFSITSSSSVDDQTMSLIVKCD--GEWTSSLYQM  164 (489)
Q Consensus        87 ~~~vv~~~~~~~~~~~l~~~~~~~~~~~pGQ~v~l~~p~~s~~~~hPFSIas~p~~~~~~l~l~Ik~~--G~~T~~L~~~  164 (489)
                      ..++++++.+++++.++++..+..+.|+||||+.|.+|.   .++|||||+|.|. +++.++|+||..  |++|+++.+.
T Consensus         4 ~~~V~~~~~~~~~~~~l~l~~~~~~~~~pGq~v~l~~~~---~~~R~ySi~s~~~-~~~~l~l~i~~~~~G~~s~~~~~~   79 (232)
T 1qfj_A            4 SCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDE---RDKRPFSMASTPD-EKGFIELHIGASEINLYAKAVMDR   79 (232)
T ss_dssp             EEEEEEEEESSSSCEEEEEEESSCCCCCTTCEEEEESSS---SCEEEEECCSCTT-STTCEEEEEC------CCHHHHHH
T ss_pred             EEEEEEEEecCCCEEEEEEecCCCCCcCCCCEEEEECCC---CceeeeecCCCCC-CCCcEEEEEEEccCCchhHHHHHh
Confidence            457888899999999999987777899999999999986   4899999999985 457899999984  5688887776


Q ss_pred             HHhcccCCcCcCcceeEEEeCCCCCCCCCCCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcc
Q 011270          165 IHAELDSDADQMRCIPVAIEGPYGPATMDFLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQ  244 (489)
Q Consensus       165 ~~~~~~~~~~~~~g~~v~v~GPyG~~~~~~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~  244 (489)
                      ++          +|+.+.|+||+|.+..+...+++++|||||+||||++++++++..++      ...+++|+|++|+.+
T Consensus        80 l~----------~Gd~v~v~gP~G~~~~~~~~~~~~vliagG~GitP~~~~l~~l~~~~------~~~~v~l~~~~r~~~  143 (232)
T 1qfj_A           80 IL----------KDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARN------PNRDITIYWGGREEQ  143 (232)
T ss_dssp             HH----------HHSEEEEEEEECSCCCCSCSSSCEEEEEETTCHHHHHHHHHHHHHHC------TTCCEEEEEEESSGG
T ss_pred             CC----------CCCEEEEeCCccceEeCCCCCCcEEEEEecccHhHHHHHHHHHHhcC------CCCcEEEEEeeCCHH
Confidence            66          58999999999998765445789999999999999999999998752      347899999999999


Q ss_pred             hhhhHHhHhHHhhhccCCCcceEEEEEEeCCCCCCcchhhhcchhhhhHhhhcCCCCceEEecCCcHHHHHHHH
Q 011270          245 EICLLNSISPLLSNQQSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLIWMAALV  318 (489)
Q Consensus       245 ~l~~~~~l~~~l~~~~~~~~~l~v~~~vTr~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~v~g~g~~~~~aav~  318 (489)
                      ++.+.+++.+...+    ..+++++.+++++++.+.+.+|++++....+. .......+++||  ++.|+.++.
T Consensus       144 ~~~~~~el~~l~~~----~~~~~~~~~~s~~~~~~~g~~g~v~~~~~~~~-~~~~~~~vyvCG--p~~m~~~v~  210 (232)
T 1qfj_A          144 HLYDLCELEALSLK----HPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDH-GTLAEHDIYIAG--RFEMAKIAR  210 (232)
T ss_dssp             GCTTHHHHHHHHHH----CTTEEEEEEESSCCTTCCSEESCHHHHHHHHC-SCCTTCEEEEES--CHHHHHHHH
T ss_pred             HhhhHHHHHHHHHH----CCCeEEEEEEcCCCCCcCCceeeHHHHHHHhc-CCccccEEEEEC--CHHHHHHHH
Confidence            99988888665332    24789998899887777777888876554432 111233445555  555666654

PyMOL of 1qfj

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2	Back alignment and structure

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*	Back alignment and structure

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*	Back alignment and structure

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*	Back alignment and structure

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}	Back alignment and structure

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*	Back alignment and structure

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*	Back alignment and structure

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*	Back alignment and structure

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}	Back alignment and structure

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*	Back alignment and structure

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*	Back alignment and structure

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*	Back alignment and structure

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...	Back alignment and structure

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*	Back alignment and structure

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*	Back alignment and structure

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5	Back alignment and structure

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}	Back alignment and structure

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*	Back alignment and structure

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*	Back alignment and structure

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*	Back alignment and structure

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}	Back alignment and structure

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*	Back alignment and structure

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}	Back alignment and structure

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*	Back alignment and structure

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*	Back alignment and structure

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4	Back alignment and structure

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4	Back alignment and structure

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*	Back alignment and structure

>3qfs_A CPR, P450R, NADPH--cytochrome P450 reductase; flavoprotein, FAD, oxidoreductase; HET: FAD NAP; 1.40A {Homo sapiens} PDB: 3qft_A*	Back alignment and structure

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*	Back alignment and structure

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}	Back alignment and structure

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}	Back alignment and structure

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}	Back alignment and structure

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}	Back alignment and structure

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*	Back alignment and structure

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1	Back alignment and structure

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2	Back alignment and structure

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}	Back alignment and structure

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*	Back alignment and structure

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*	Back alignment and structure

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}	Back alignment and structure

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*	Back alignment and structure

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5	Back alignment and structure

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*	Back alignment and structure

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}	Back alignment and structure

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2	Back alignment and structure

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*	Back alignment and structure

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...	Back alignment and structure

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}	Back alignment and structure

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*	Back alignment and structure

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*	Back alignment and structure

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		489
d1gvha3		143	c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal d	7e-07
d1a8pa2		158	c.25.1.1 (A:101-258) Ferredoxin reductase (flavodo	1e-06
d2bmwa2		162	c.25.1.1 (A:142-303) Ferredoxin reductase (flavodo	4e-06
d1ep3b2		160	c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase	2e-05
d1krha2		133	c.25.1.2 (A:206-338) Benzoate dioxygenase reductas	2e-05
d1tvca2		141	c.25.1.2 (A:111-251) Methane monooxygenase compone	2e-05
d1jb9a2		154	c.25.1.1 (A:163-316) Ferredoxin reductase (flavodo	3e-05
d1fdra2		148	c.25.1.1 (A:101-248) Ferredoxin reductase (flavodo	3e-05
d1qfja2		135	c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase	4e-05
d1cqxa3		142	c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal d	4e-05
d1f20a2		165	c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synth	1e-04
d2cnda2		146	c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea	2e-04
d1fnda2		160	c.25.1.1 (A:155-314) Ferredoxin reductase (flavodo	5e-04
d1umka2		147	c.25.1.1 (A:154-300) cytochrome b5 reductase {Huma	6e-04
d2piaa2		120	c.25.1.2 (A:104-223) Phthalate dioxygenase reducta	0.001
d1ddga2		153	c.25.1.4 (A:447-599) Sulfite reductase flavoprotei	0.002
d1ja1a3		160	c.25.1.4 (A:519-678) NADPH-cytochrome p450 reducta	0.004

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 143	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 46.4 bits (109), Expect = 7e-07
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 6/113 (5%)

Query: 200 LLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQ 259
           + L++ G+G TP L++L  +A A          +V   +  ++       + +  L  + 
Sbjct: 9   VTLISAGVGQTPMLAMLDTLAKAGHTA------QVNWFHAAENGDVHAFADEVKELGQSL 62

Query: 260 QSKKWHLTLKVFVTQEEQSSVTVREVLNDLSLVRAVRFGTQSNYAVNGLESLI 312
                H   +     +        E L DLS +          + + G    +
Sbjct: 63  PRFTAHTWYRQPSEADRAKGQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFM 115

PyMOL of d1gvha3

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]} Length = 158	Back information, alignment and structure

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]} Length = 162	Back information, alignment and structure

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 160	Back information, alignment and structure

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]} Length = 133	Back information, alignment and structure

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]} Length = 141	Back information, alignment and structure

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]} Length = 154	Back information, alignment and structure

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]} Length = 148	Back information, alignment and structure

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]} Length = 135	Back information, alignment and structure

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]} Length = 142	Back information, alignment and structure

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 165	Back information, alignment and structure

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]} Length = 146	Back information, alignment and structure

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 160	Back information, alignment and structure

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 147	Back information, alignment and structure

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 120	Back information, alignment and structure

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]} Length = 153	Back information, alignment and structure

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 160	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		489
d1cqxa3		142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	99.65
d1qfja1		97	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.62
d1tvca2		141	Methane monooxygenase component C, MmoC {Methyloco	99.62
d1umka2		147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.61
d1gvha3		143	Flavohemoglobin, C-terminal domain {Escherichia co	99.57
d2piaa2		120	Phthalate dioxygenase reductase {Pseudomonas cepac	99.56
d1a8pa1		99	Ferredoxin reductase (flavodoxin reductase) N-term	99.53
d1krha2		133	Benzoate dioxygenase reductase {Acinetobacter sp.	99.51
d1qfja2		135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	99.48
d1tvca1		109	Methane monooxygenase component C, MmoC {Methyloco	99.47
d1fdra1		99	Ferredoxin reductase (flavodoxin reductase) N-term	99.43
d1krha1		100	Benzoate dioxygenase reductase {Acinetobacter sp.	99.42
d1fnda2		160	Ferredoxin reductase (flavodoxin reductase) {Spina	99.41
d2cnda2		146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	99.4
d1ep3b1		101	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.39
d1fdra2		148	Ferredoxin reductase (flavodoxin reductase) {Esche	99.39
d1jb9a2		154	Ferredoxin reductase (flavodoxin reductase) {Maize	99.37
d2bmwa2		162	Ferredoxin reductase (flavodoxin reductase) {Cyano	99.33
d1cqxa2		111	Flavohemoglobin, central domain {Alcaligenes eutro	99.33
d1ddga2		153	Sulfite reductase flavoprotein {Escherichia coli [	99.31
d1ja1a3		160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	99.3
d1f20a2		165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	99.3
d1gvha2		107	Flavohemoglobin, central domain {Escherichia coli	99.25
d1a8pa2		158	Ferredoxin reductase (flavodoxin reductase) {Azoto	99.22
d2piaa1		103	Phthalate dioxygenase reductase {Pseudomonas cepac	99.21
d1ep3b2		160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	99.19
d2cnda1		114	Nitrate reductase core domain {Corn (Zea mays) [Ta	99.12
d1umka1		124	cytochrome b5 reductase {Human (Homo sapiens) [Tax	99.04
d1fnda1		136	Ferredoxin reductase (flavodoxin reductase) N-term	99.02
d2bmwa1		133	Ferredoxin reductase (flavodoxin reductase) N-term	98.94
d1jb9a1		157	Ferredoxin reductase (flavodoxin reductase) N-term	98.38
d1tvca2		141	Methane monooxygenase component C, MmoC {Methyloco	95.65
d1krha2		133	Benzoate dioxygenase reductase {Acinetobacter sp.	95.31
d1qfja2		135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	94.97
d1fdra2		148	Ferredoxin reductase (flavodoxin reductase) {Esche	94.7
d1a8pa2		158	Ferredoxin reductase (flavodoxin reductase) {Azoto	93.59
d2bmwa2		162	Ferredoxin reductase (flavodoxin reductase) {Cyano	93.21
d1umka2		147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	87.35
d1jb9a2		154	Ferredoxin reductase (flavodoxin reductase) {Maize	87.0
d1fnda2		160	Ferredoxin reductase (flavodoxin reductase) {Spina	86.72
d1f20a2		165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	84.25
d1ep3b2		160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	83.66
d2cnda2		146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	82.64
d1ddga1		221	Sulfite reductase flavoprotein {Escherichia coli [	82.38

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=99.65  E-value=5.3e-16  Score=134.49  Aligned_cols=73  Identities=23%  Similarity=0.337  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEEeCCChhhHHHHHHHHHHhhcccCCCCCceEEEEEEeCCcchhhhHHhHhHHhhhccCCCcceEEEEEEe
Q 011270          194 FLRYDSLLLVAGGIGITPFLSILQEIASAQSNRKYRFPSKVQLIYVIKSSQEICLLNSISPLLSNQQSKKWHLTLKVFVT  273 (489)
Q Consensus       194 ~~~~~~vvlIAGGiGITP~lsil~~l~~~~~~~~~~~~~~i~lvw~~r~~~~l~~~~~l~~~l~~~~~~~~~l~v~~~vT  273 (489)
                      .+...++|||||||||||++||+++++.+       ..++++|+|++|+.+++.+.+++.....+    ..+++++.+++
T Consensus         2 ~d~~~plvliagGtGIaP~~sil~~~~~~-------~~~~i~li~~~r~~~~l~~~~~~~~~~~~----~~~~~~~~~~~   70 (142)
T d1cqxa3           2 VDAKTPIVLISGGVGLTPMVSMLKVALQA-------PPRQVVFVHGARNSAVHAMRDRLREAAKT----YENLDLFVFYD   70 (142)
T ss_dssp             TTCCSCEEEEESSCCHHHHHHHHHHHTCS-------SCCCEEEEEEESCSSSCHHHHHHHHHHHH----CTTEEEEEEES
T ss_pred             CCCCCCEEEEEcceeHHHHHHHHHHHHHc-------CCCcEEEEeeccChhhhhhHHHHHHHHHh----CCCeEEEEEEc
Confidence            34567899999999999999999987753       24689999999999999999888765442    36788898988


Q ss_pred             CCCC
Q 011270          274 QEEQ  277 (489)
Q Consensus       274 r~~~  277 (489)
                      ++..
T Consensus        71 ~~~~   74 (142)
T d1cqxa3          71 QPLP   74 (142)
T ss_dssp             SCCT
T ss_pred             ccCC
Confidence            7653

PyMOL of d1cqxa3

>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}	Back information, alignment and structure

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}	Back information, alignment and structure

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}	Back information, alignment and structure

>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain {Alcaligenes eutrophus [TaxId: 106590]}	Back information, alignment and structure

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}	Back information, alignment and structure

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}	Back information, alignment and structure

>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}	Back information, alignment and structure

>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin reductase) N-terminal domain {Maize (Zea mays), root isoform [TaxId: 4577]}	Back information, alignment and structure

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}	Back information, alignment and structure

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}	Back information, alignment and structure

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}	Back information, alignment and structure

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}	Back information, alignment and structure

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}	Back information, alignment and structure

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}	Back information, alignment and structure

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}	Back information, alignment and structure

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}	Back information, alignment and structure

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}	Back information, alignment and structure