Citrus Sinensis ID: 011273

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKDNLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHcHHHHHHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEHHHHHccHHHHccccccHHHHHHHHHHHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHHHHHHHHHHHcccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccEEcccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcEcccccccccccccccEEEccccccHHccccccccccccccccHcccccccccccccccccccccccccccEcccEEcc
Coil and Loop (DISEMBL)
MSVDGETSRVMKGVQHGacdyllkpirMKELRNIWQHVFRKKIHevrdieniegfesihmtrsgsdqsvdgplltgedltsvrkrkdaenrhddrdcgdasstkkARVVWSIDLHQKFVKAVNqigfdkvgpkkildlmnvpwltrENVASHLQKYRLYLTRLQKDElktsvggikqkdspskdsaasfgiqnsitvhhhndvsnggyrfsgsnsvvqnvdakslegdvkgidtipvtghkrvltvdipnshkarcsqigfngsfvpghsdvnftsfdsaiptqpwsevsetqfqhehkplrlendftqlplpgprhhiqvdciqsgpsasskpsvvdkdnlkpfdctyksnypnaipigsavdtfpvqttspivnhqpfepiarttssmksqglnlscipdlEAAQRninwgvgssltsldedLQLCWLQGDcfamnlglqdinfseyndpalnsevpfhlydtmrfdyehyydptecpiidqglfia
Flexible Loop (DISEMBL)
msvdgetsrvmkgvqhgaCDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHmtrsgsdqsvdgplltgedltsvrkrkdaenrhddrdcgdasstkkarvVWSIDLHQKFVKAVNqigfdkvgpkKILDLMNVPWLTRENVASHLQKYRLYLTRLQkdelktsvggikqkdspskdsaaSFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAkslegdvkgidtipvtghkrvlTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSgpsasskpsvvdKDNLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Low Complexity Region (SEG)
MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKDNLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Disordered region (IsUnstruct)
************GVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESI***********************************************ARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQK****************************SITVHHHNDVSNGGYRFSG**SVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAI***************************************V********************LKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNH*****************LNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFI*
Disordered Region (DISOPRED)
******T***MKGVQHGACDYLLKPIRMKELRNIWQHVFRKK******************************************************************VWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRL*************************************************************************************************************************************************************************************************************************************************************************DLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Disordered Region (DISEMBL)
***********KGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSV***********************ARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSV**************ASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPWS*********EHKPLRLENDFTQLPLPGPRHHIQVDCIQS**********VDKDNLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Disordered Region (DISPRO)
******TSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH***********************************************************KKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD*****************************TVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDI*************************FTSFDSAIPTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKDNLKPFDCTYKSNYPNA*PIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKDNLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFIA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	489	2.2.26 [Sep-21-2011]
Q9FXD6	521	Two-component response re	yes	no	0.860	0.808	0.427	2e-75
Q9ZWJ9	664	Two-component response re	no	no	0.329	0.242	0.532	1e-38
Q940D0	690	Two-component response re	no	no	0.368	0.260	0.476	9e-38
Q8L9Y3	382	Two-component response re	no	no	0.329	0.421	0.497	1e-37
P62598	596	Two-component response re	no	no	0.419	0.343	0.398	6e-36
Q9FGT7	635	Two-component response re	no	no	0.327	0.251	0.485	5e-32
O49397	552	Two-component response re	no	no	0.382	0.338	0.384	1e-30
Q7Y0W3	341	Two-component response re	N/A	no	0.304	0.436	0.394	7e-26
Q7Y0W5	341	Two-component response re	no	no	0.304	0.436	0.394	7e-26
Q9FJ16	292	Putative two-component re	no	no	0.310	0.520	0.4	7e-22

>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana GN=ARR11 PE=1 SV=1

 Score =  283 bits (725), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 214/501 (42%), Positives = 274/501 (54%), Gaps = 80/501 (15%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFE--SI 58
           MSVDGETSRVMKGVQHGACDYLLKPIRMKEL+ IWQHV RKK+ EVRDIE   G+E  + 
Sbjct: 89  MSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGC-GYEGGAD 147

Query: 59  HMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRH---DDRDCGDASSTKKARVVWSIDLH 115
            +TR      + G    GED++  +KRKD +       D     +SS+KKARVVWS +LH
Sbjct: 148 WITRYDEAHFLGG----GEDVSFGKKRKDFDFEKKLLQDESDPSSSSSKKARVVWSFELH 203

Query: 116 QKFVKAVNQIGFD-KVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQK-DELKTSVG 173
            KFV AVNQIG D K GPKKILDLMNVPWLTRENVASHLQKYRLYL+RL+K  ELK   G
Sbjct: 204 HKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLEKGKELKCYSG 263

Query: 174 GIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGID 233
           G+K  DS  KD   + G Q+              Y FSG NS++Q    K+ E D K + 
Sbjct: 264 GVKNADSSPKDVEVNSGYQSP---------GRSSYVFSGGNSLIQ----KATEIDPKPLA 310

Query: 234 TIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPWSEVSETQ 293
           +  ++     L  D+    K + ++IGF+         ++ ++FDS +   PW++V E  
Sbjct: 311 SASLSD----LNTDVIMPPKTKKTRIGFD-------PPISSSAFDSLL---PWNDVPEVL 356

Query: 294 FQHEHKPLRLENDFT-QLPLPGPRHHIQVDCIQSGPSASSKPSVVDKDNLKPFDCTYKSN 352
              E KP+  EN F  Q PLP           QS   A+S PS+++++   P++     +
Sbjct: 357 ---ESKPVLYENSFLQQQPLPS----------QSSYVANSAPSLMEEEMKPPYETPAGGS 403

Query: 353 YPNAIPIGSAVDTFPV-QTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNIN 411
             NA       D F + Q   P V  Q  +P     S+MK Q  N       EA  R++N
Sbjct: 404 SVNA-------DEFLMPQDKIPTVTLQDLDP-----SAMKLQEFN------TEAILRSLN 445

Query: 412 WGVGSS--LTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFD 469
           W +  S    SLD DL L WLQG+ F  N GLQ  ++S             + Y   R  
Sbjct: 446 WELPESHHSVSLDTDLDLTWLQGERFLANTGLQFQDYSSSPSLLSELPAHLNWYGNERLP 505

Query: 470 YEHYYDPTECP-IIDQGLFIA 489
                DP E   ++DQGLFI+
Sbjct: 506 -----DPDEYSFMVDQGLFIS 521

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana GN=ARR2 PE=1 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 111/171 (64%), Gaps = 10/171 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MS D   S V+KGV HGA DYL+KP+R++ L+NIWQHV RKK +E    E+  G  SI  
Sbjct: 106 MSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGG--SIED 163

Query: 61  TRSGSDQSVDGPLLTGEDLTSV--------RKRKDAENRHDDRDCGDASSTKKARVVWSI 112
           T    D+          + +SV        RKRK+ E      D  D+SS KK RVVWS+
Sbjct: 164 TGGDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKEDSSSLKKPRVVWSV 223

Query: 113 DLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163
           +LHQ+FV AVNQ+G DK  PKKIL++MNVP LTRENVASHLQKYR+YL RL
Sbjct: 224 ELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway.

Arabidopsis thaliana (taxid: 3702)

>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana GN=ARR1 PE=1 SV=2

 Score =  158 bits (399), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/214 (47%), Positives = 126/214 (58%), Gaps = 34/214 (15%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESI-- 58
           MS D   S V+KGV HGA DYL+KP+RM+ L+NIWQHV RK+  E    E+    E    
Sbjct: 115 MSADDSKSVVLKGVTHGAVDYLIKPVRMEALKNIWQHVVRKRRSEWSVPEHSGSIEETGE 174

Query: 59  -----------HMTRSGSDQSVD---GPLLTGEDL-TSVRKRKD--AENRHDDRDCGDAS 101
                          SG + +VD     +  G +  +S RKRKD   E + DD+D  DAS
Sbjct: 175 RQQQQHRGGGGGAAVSGGEDAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKDE-DAS 233

Query: 102 STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLT 161
           + KK RVVWS++LHQ+FV AVNQ+G +K  PKKIL+LMNVP LTRENVASHLQKYR+YL 
Sbjct: 234 NLKKPRVVWSVELHQQFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLR 293

Query: 162 RLQKDELKTSVGGIKQKDSPSKDSA-----ASFG 190
           RL         GG+ Q      +S      ASFG
Sbjct: 294 RL---------GGVSQHQGNLNNSFMTGQDASFG 318

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana GN=ARR14 PE=1 SV=2

 Score =  157 bits (398), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/171 (49%), Positives = 116/171 (67%), Gaps = 10/171 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDG T+ VM G+ HGACDYL+KPIR +EL+NIWQHV R+K    +++ + +  E    
Sbjct: 90  MSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALED--N 147

Query: 61  TRSGSDQSV--------DGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSI 112
             SGS ++V        +  L+   +    +KR    + ++D    D  ++KK+RVVWSI
Sbjct: 148 KNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNSKKSRVVWSI 207

Query: 113 DLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163
           +LHQ+FV AVN++G DK  PK+IL+LMNVP L+RENVASHLQK+RLYL RL
Sbjct: 208 ELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana GN=ARR12 PE=2 SV=2

 Score =  152 bits (384), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/236 (39%), Positives = 130/236 (55%), Gaps = 31/236 (13%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVR------DIENIEG 54
           +S   +   VMKGV HGACDYLLKP+R++EL+NIWQHV R +  + R      D  +  G
Sbjct: 95  LSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFDKNRGSNNNGDKRDGSG 154

Query: 55  FESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKD---AENRHDDRDCGDASSTKKARVVWS 111
            E +      SDQ+         +    RKRKD    +   D  D  D+ + KK RVVW+
Sbjct: 155 NEGV----GNSDQN---------NGKGNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWT 201

Query: 112 IDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTS 171
           ++LH+KFV AVNQ+G++K  PKKILDLMNV  LTRENVASHLQK+RLYL R         
Sbjct: 202 VELHKKFVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKR--------- 252

Query: 172 VGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEG 227
           + G+  + +   +S   F   N +   HH  +  G  ++ G    +++     + G
Sbjct: 253 ISGVANQQAIMANSELHFMQMNGLDGFHHRPIPVGSGQYHGGAPAMRSFPPNGILG 308

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2

 Score =  139 bits (350), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 107/169 (63%), Gaps = 9/169 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESI-H 59
           +S   +   VMKG+ HGACDYL+KP+ +KEL+NIW HV +K I     +      +S+  
Sbjct: 95  LSAHSDYDSVMKGIIHGACDYLVKPVGLKELQNIWHHVVKKNIKSYAKLLPPSESDSVPS 154

Query: 60  MTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASST-KKARVVWSIDLHQKF 118
            +R   D+  D    +G++  S R+  D E    D   GD S T KK RVVWS +LHQKF
Sbjct: 155 ASRKRKDKVND----SGDEDDSDREEDDGEGSEQD---GDGSGTRKKPRVVWSQELHQKF 207

Query: 119 VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDE 167
           V AV Q+G DK  PKKILDLM++  LTRENVASHLQKYRLYL ++ + +
Sbjct: 208 VSAVQQLGLDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKKIDEGQ 256

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana GN=ARR10 PE=1 SV=1

 Score =  134 bits (338), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/229 (38%), Positives = 123/229 (53%), Gaps = 42/229 (18%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           +S   +   VMKGV+HGACDYLLKP+R++EL+NIWQHV RK   +        G      
Sbjct: 95  LSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNKSNVSNG------ 148

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKD------AENRHDDRDCGDASSTKKARVVWSIDL 114
                         +G    + RKRK+       E R +D D  D ++ KK RV+W+ +L
Sbjct: 149 --------------SGNCDKANRKRKEQYEEEEEEERGNDND--DPTAQKKPRVLWTHEL 192

Query: 115 HQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGG 174
           H KF+ AV+ +G ++  PKKILDLMNV  LTRENVASHLQK+R+ L ++  D        
Sbjct: 193 HNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDD-------A 245

Query: 175 IKQKDSPSKDSAASFGIQNSIT-----VHHHNDVSNGGYRFSGSNSVVQ 218
           I+Q +  + DS   F   NS        HHH  +  G  +F G  ++++
Sbjct: 246 IQQANRAAIDS--HFMQMNSQKGLGGFYHHHRGIPVGSGQFHGGTTMMR 292

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica PE=2 SV=1

 Score =  119 bits (297), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 31/180 (17%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFE---- 56
           M+  G+T+ VMK V +GA D+LLKP+R++EL NIWQH+FRK++ + ++   +   E    
Sbjct: 89  MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 148

Query: 57  ----------SIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRH----DDRDCGDASS 102
                     +   TRS + ++   PL           R D  N +    D RD G    
Sbjct: 149 PPSILAMARATPATTRSTATEASLAPL-------ENEVRDDMVNYNGEITDIRDLG---- 197

Query: 103 TKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
             K+R+ W+  LH++F+ AVN +G DK  PKKIL +M V  LTRE VASHLQKYR+ L +
Sbjct: 198 --KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates Hd3a and other FT-like genes independently from Hd1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp. japonica GN=EHD1 PE=1 SV=1

 Score =  119 bits (297), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/180 (39%), Positives = 101/180 (56%), Gaps = 31/180 (17%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFE---- 56
           M+  G+T+ VMK V +GA D+LLKP+R++EL NIWQH+FRK++ + ++   +   E    
Sbjct: 89  MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 148

Query: 57  ----------SIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRH----DDRDCGDASS 102
                     +   TRS + ++   PL           R D  N +    D RD G    
Sbjct: 149 PPSILAMARATPATTRSTATEASLAPL-------ENEVRDDMVNYNGEITDIRDLG---- 197

Query: 103 TKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
             K+R+ W+  LH++F+ AVN +G DK  PKKIL +M V  LTRE VASHLQKYR+ L +
Sbjct: 198 --KSRLTWTTQLHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255

Transcriptional activator that acts as floral inducer to promote short-day (SD) flowering pathway. Activates HD3A and other FT-like genes independently from HD1. May also activate MADS-box transcription factors involved in flowering regulation.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=3 SV=1

 Score =  105 bits (262), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 62/155 (40%), Positives = 94/155 (60%), Gaps = 3/155 (1%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESI-H 59
           +S D     V K + +GA DYL+KPIR ++LR +++H+  KK+ E R +   E  ++   
Sbjct: 120 ISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV-KKMRERRSVVTGEAEKAAGE 178

Query: 60  MTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFV 119
            + S  D ++  P  +    + +    + E+RHD  D   ASS KK RVVW  +LHQ F+
Sbjct: 179 KSSSVGDSTIRNPNKSKRS-SCLEAEVNEEDRHDHNDRACASSAKKRRVVWDEELHQNFL 237

Query: 120 KAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQ 154
            AV+ +G ++  PKKILD+M V +++RENVASHLQ
Sbjct: 238 NAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272

Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
225425924	594	PREDICTED: two-component response regula	0.993	0.818	0.608	1e-161
224102357	642	type-b response regulator [Populus trich	0.979	0.746	0.573	1e-157
255547918	584	two-component sensor histidine kinase ba	0.985	0.825	0.579	1e-155
298103728	594	putative B-type response regulator 14 [P	0.979	0.806	0.563	1e-153
356528234	581	PREDICTED: LOW QUALITY PROTEIN: two-comp	0.971	0.817	0.536	1e-137
356510875	584	PREDICTED: two-component response regula	0.971	0.813	0.536	1e-132
298103724	563	putative B-type response regulator 21 [P	0.910	0.790	0.525	1e-132
356538109	585	PREDICTED: two-component response regula	0.975	0.815	0.554	1e-132
356569201	557	PREDICTED: two-component response regula	0.932	0.818	0.542	1e-131
357463135	570	Response regulator [Medicago truncatula]	0.952	0.817	0.537	1e-125

>gi|225425924|ref|XP_002267616.1| PREDICTED: two-component response regulator ARR11 [Vitis vinifera] gi|297738324|emb|CBI27525.3| unnamed protein product [Vitis vinifera]

 Score =  575 bits (1483), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 306/503 (60%), Positives = 373/503 (74%), Gaps = 17/503 (3%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI+EVRDIE+ E  +   +
Sbjct: 95  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKINEVRDIESHESIDDFQI 154

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
            R+G +QS DG L++G D TSV+KRKD EN+HDDRD  D SS KKARVVWS+DLHQKFV+
Sbjct: 155 MRNGPEQSDDGYLVSG-DPTSVKKRKDTENKHDDRDHCDPSSVKKARVVWSVDLHQKFVR 213

Query: 121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQK-DELKTSVGGIKQKD 179
           AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL+RLQK D+LKTS GGIK  D
Sbjct: 214 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKEDDLKTSCGGIKHSD 273

Query: 180 SPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQ--NVDAKSLEGDVKGIDTIPV 237
              KDS  SFG+ N +T  H ND +N GY FSG+  +VQ  ++D K  EGD+KGI ++P 
Sbjct: 274 LSPKDSTGSFGLSN-LTNMHQNDAANSGYGFSGNKKLVQSIDIDPKVQEGDLKGIISLPR 332

Query: 238 TGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQ-PWS--EVSETQF 294
           T  K++LT +  +  KAR SQ+GFN SF     DVN+ +FDS+I  Q  WS  +V E QF
Sbjct: 333 TEQKKMLTGEASDPQKARSSQMGFNDSFGSIEQDVNYAAFDSSISAQYSWSGEKVPEAQF 392

Query: 295 QHEHKP-LRLENDFTQLPLPGPRHHIQVDCIQ-SGPSASSKPSVVDKD-----NLKPFDC 347
           Q EH+P ++LE  F QLP+PGP+HHIQVDC+Q + P  S   S  ++D      +KP   
Sbjct: 393 QEEHRPSVQLETSFNQLPVPGPQHHIQVDCLQPTLPPISPGSSRKERDKASPAKIKPLYA 452

Query: 348 TYKSNY-PNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAA 406
           +Y S++  N    GS +D F VQ+   +VN Q FEPI+  T +M++QG N S + DLE+ 
Sbjct: 453 SYDSHHVSNVSSAGSEIDLFSVQSKCQMVNPQAFEPISNITLNMRNQGHNQSGVNDLESF 512

Query: 407 QRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTM 466
           QRN+  G GS+L SL EDLQ+ WLQGDC  MNLGL++I FS+Y+D  L +EVPFHLYD +
Sbjct: 513 QRNLISGSGSALESL-EDLQVHWLQGDCNPMNLGLRNIEFSDYHDQKLITEVPFHLYDPL 571

Query: 467 RFDYEHYYDPTECPIIDQGLFIA 489
           + DYE+  D TE PI+DQGLFIA
Sbjct: 572 KLDYEYLSDLTEYPIMDQGLFIA 594

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102357|ref|XP_002312648.1| type-b response regulator [Populus trichocarpa] gi|222852468|gb|EEE90015.1| type-b response regulator [Populus trichocarpa]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/509 (57%), Positives = 361/509 (70%), Gaps = 30/509 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIE +E  ES  M
Sbjct: 144 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIETLERVESFQM 203

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
           TR+GSDQ  DG +L GEDLTS++KRK  E++HD++D GD+ STKKARVVWS+DLHQKFVK
Sbjct: 204 TRNGSDQYEDGHVLCGEDLTSIKKRKHIESKHDEKDTGDSISTKKARVVWSVDLHQKFVK 263

Query: 121 AVNQIGFD------------------KVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
           AVNQIGFD                  +VGPKKILD+MNVPWLTRENVASHLQKYRLYL+R
Sbjct: 264 AVNQIGFDTTSLPSFDGAMTGSVCLAEVGPKKILDMMNVPWLTRENVASHLQKYRLYLSR 323

Query: 163 LQKD-ELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVD 221
           LQK+ + K   GGIKQ DSP +DSA SFG QNSI +  HNDVSNG YRFSGS+ VV N D
Sbjct: 324 LQKENDFKNPAGGIKQSDSPLRDSAGSFGSQNSINL-QHNDVSNGSYRFSGSSLVVHNGD 382

Query: 222 AKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAI 281
            +S + D K + + PV   KR LTV++PN    R SQ+ F     P  S+V+F + DS  
Sbjct: 383 PRSHDSDRKRLVSTPVEEPKRTLTVNVPNPCIPRSSQMEFGHPLAPPQSEVDFGALDSTF 442

Query: 282 PTQ-PWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKD 340
           PT+ PW  + E Q + EH PL L ++F+ LPLPG +   Q D  Q  P+ SS PS     
Sbjct: 443 PTKYPWCGIPEIQLKKEHNPLHLNDEFSHLPLPGQKQLTQADYPQPAPAISSAPS----- 497

Query: 341 NLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCI 400
            L P    Y+SN  +A     AVD+ P+QT + + NHQ  E I+++T S+++QG N++ I
Sbjct: 498 -LTPSHNEYRSNVNHASSTAIAVDSSPIQTKTNVANHQAIELISKSTPSLENQGFNMNSI 556

Query: 401 PDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPF 460
            + E++++NIN G+    T+L+EDLQ+CW+ GDC+ MNLGLQ+I   EY DP L ++VP 
Sbjct: 557 TEFESSRKNINLGM-LPFTTLEEDLQVCWVPGDCY-MNLGLQNIEVLEYFDPGLITDVPV 614

Query: 461 HLYDTMRFDYEHYYDPTECPIIDQGLFIA 489
           +L D +RFDYE + DPTE  +IDQ LFIA
Sbjct: 615 NLNDGLRFDYE-FNDPTEYSLIDQSLFIA 642

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547918|ref|XP_002515016.1| two-component sensor histidine kinase bacteria, putative [Ricinus communis] gi|223546067|gb|EEF47570.1| two-component sensor histidine kinase bacteria, putative [Ricinus communis]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 288/497 (57%), Positives = 360/497 (72%), Gaps = 15/497 (3%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIE +EG ESI M
Sbjct: 95  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIEILEGMESIQM 154

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
            R GSD S DG L  GEDLTSV+KRKD EN+HDD+D G++S+TKKARVVWS+DLHQKFVK
Sbjct: 155 ARIGSDHSDDGYLFCGEDLTSVKKRKDIENKHDDKD-GESSTTKKARVVWSVDLHQKFVK 213

Query: 121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSVGGIKQKD 179
           AVNQIG DKVGPKKILDLMNVPWLTRENVASHLQKYRLYL+RLQK+ + KTS+GGIKQ +
Sbjct: 214 AVNQIGPDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDSKTSIGGIKQSE 273

Query: 180 SPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTG 239
           S   +SA SFG QNSI +    DVSNG Y FSG++  VQN + ++ E + KGI       
Sbjct: 274 SSLGESAGSFGTQNSINM-QQKDVSNGNYGFSGNSLFVQNTEPRNHESEKKGIVLKNAAE 332

Query: 240 HKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQ-PWSEVSETQFQHEH 298
            +R LTVDIP + K+R SQ+ F  SF+   S+VNF +  S+ PTQ  W E+ + Q + E 
Sbjct: 333 SRRALTVDIPETRKSRSSQVEFGHSFISTASEVNFGAIGSSFPTQYSWCEIPQIQMKQEP 392

Query: 299 KPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKD----NLKPFDCTYKSNYP 354
           KPL+L++ F +L LPG + HIQ D  Q  P   S  S+ ++D     +KP     K N  
Sbjct: 393 KPLQLDDGFNKLQLPGQQQHIQADYPQPVPPVISGSSITERDIDGPKIKPL-YESKQNAS 451

Query: 355 NAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNINWGV 414
           +    G A+D+  +QT + + N+Q FEP   +TS++K+QG N +CI D+E+AQ+++NWG 
Sbjct: 452 HVTSTGGAIDSSHIQTKTFVPNNQVFEPNCTSTSTIKNQGFNPNCISDVESAQKSVNWG- 510

Query: 415 GSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEH-- 472
              ++ LD+D Q+CW QGD +AMN+G Q+I   E  DP L ++VP HLYD +RFD +   
Sbjct: 511 ---MSPLDDDFQVCWFQGDYYAMNVGRQNIELPENYDPGLIADVPTHLYDAVRFDCDSTL 567

Query: 473 YYDPTECPIIDQGLFIA 489
            YD TE  +++QGLFIA
Sbjct: 568 LYDLTEYSLVEQGLFIA 584

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103728|emb|CBM42565.1| putative B-type response regulator 14 [Populus x canadensis]

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 287/509 (56%), Positives = 358/509 (70%), Gaps = 30/509 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIE +E  ES  M
Sbjct: 96  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIETLERVESFQM 155

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
           TR+GSDQ  DG +L GEDLTS++KRK  E++HD++D GD+ STKKARVVWS+DLHQKFVK
Sbjct: 156 TRNGSDQYEDGHVLCGEDLTSIKKRKHFESKHDEKDTGDSISTKKARVVWSVDLHQKFVK 215

Query: 121 AVNQIGFD------------------KVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
           AVNQIGFD                  +VGPKKILD+MNVPWLTRENVASHLQKYRLYL+R
Sbjct: 216 AVNQIGFDTTSLPSFDGAMTGSVCLAEVGPKKILDMMNVPWLTRENVASHLQKYRLYLSR 275

Query: 163 LQKD-ELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVD 221
           LQK+ + K   GG KQ DSP +DSA SFG QNSI +   NDVSNG YRFSGS+ VV N D
Sbjct: 276 LQKENDFKNPAGGTKQSDSPLRDSARSFGSQNSINL-QPNDVSNGSYRFSGSSLVVHNGD 334

Query: 222 AKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAI 281
            +S + D K + + PV   KR LTV++PN    R SQ+ F     P  S+V+F + DS  
Sbjct: 335 PRSHDSDRKRLVSTPVEEPKRTLTVNVPNPCIPRSSQMEFGHPLAPPQSEVDFGALDSTF 394

Query: 282 PTQ-PWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKD 340
           PT+ PW  + E Q + EH PL L ++F+ LPLPG +   Q D  Q  P+ SS PS     
Sbjct: 395 PTKYPWCGIPEIQLKKEHNPLHLNDEFSHLPLPGQKQLTQADYPQPAPAISSAPS----- 449

Query: 341 NLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCI 400
            L P    Y+SN  +A     AVD+  +Q+ + + NHQ  E I+++T S+++QG N++ I
Sbjct: 450 -LTPSHNEYRSNVNHASSTAIAVDSSTIQSKTSVANHQAIELISKSTPSLENQGFNMNSI 508

Query: 401 PDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPF 460
            + E++++NIN G+    T+L+EDL++CW+ GDC+ MNLGLQ+I   EY DP L ++VP 
Sbjct: 509 TEFESSRKNINLGM-LPFTTLEEDLRVCWVPGDCY-MNLGLQNIEVLEYFDPGLLTDVPV 566

Query: 461 HLYDTMRFDYEHYYDPTECPIIDQGLFIA 489
           +L D +RFDYE + DPTE  +IDQ LFIA
Sbjct: 567 NLNDGLRFDYE-FNDPTEYSLIDQSLFIA 594

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356528234|ref|XP_003532710.1| PREDICTED: LOW QUALITY PROTEIN: two-component response regulator ARR11-like [Glycine max]

 Score =  493 bits (1269), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 269/501 (53%), Positives = 334/501 (66%), Gaps = 26/501 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGF--ESI 58
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK++HE RD E+ EGF  E I
Sbjct: 95  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFDFEGI 154

Query: 59  HMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKF 118
           H+ R+GSD S DG L   E+ TS++KRKDA+N+HDD++ GD   TKKARVVWS+DLHQKF
Sbjct: 155 HLMRNGSDHSDDGNLFAVEETTSIKKRKDADNKHDDKEFGDHFPTKKARVVWSVDLHQKF 214

Query: 119 VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSVGGIKQ 177
           VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL+RLQK+ + K+S  GIK 
Sbjct: 215 VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKH 274

Query: 178 KDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPV 237
            DSPSKD   SF   N+      ND++   + +S    ++Q +DA S EGD+KGI + P 
Sbjct: 275 SDSPSKD-LGSFSFLNTAN-KQQNDIATDSFSYSDGTLLIQ-MDATSYEGDLKGIVSEPT 331

Query: 238 TGHKRVLTVDIPNSHKARCSQIGFNGSFVPGH-SDVNFTSFDSAIPTQ-PWSEVSETQFQ 295
           T  +R  T +IP+    + SQ   N  F     S+ N   FD  IPT+  WSE  +   +
Sbjct: 332 TEKRRASTSEIPDPKVQKSSQKSLNKPFTSVESSEANHAVFDCTIPTEYSWSEFPKGPLK 391

Query: 296 HEHK-PLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKD-----NLKPFDCTY 349
            E K P++LE+   QLPL G +HHIQ+D  QS  S +S PS+ +++       KP    Y
Sbjct: 392 EEQKTPVQLEDSLCQLPLHGTQHHIQIDQSQSIASINSNPSITEEEVAAKLETKPLYAGY 451

Query: 350 KSNYPNAI-PIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQR 408
           +S+Y N +  IGSAV+ F  Q+ S +V+ Q  EP   +  S+K+QG NL CI DL+  QR
Sbjct: 452 ESDYVNPVSSIGSAVEAFRSQSKSLMVSDQSSEPTFTSNLSLKTQGFNLDCISDLDFYQR 511

Query: 409 NINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRF 468
           N+  G   +   LDEDL    LQ +C+ MN GLQ+I+ SEY DP L +EVP H YD+   
Sbjct: 512 NLLLGGEVASAPLDEDLNFFLLQSECYNMNFGLQNIDMSEYYDPRLTAEVPSHFYDSA-- 569

Query: 469 DYEHYYDPTECPIIDQGLFIA 489
           DY           +DQ LFIA
Sbjct: 570 DYSS---------VDQSLFIA 581

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510875|ref|XP_003524159.1| PREDICTED: two-component response regulator ARR11-like [Glycine max]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 270/503 (53%), Positives = 336/503 (66%), Gaps = 28/503 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGF--ESI 58
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK++HE RD E+ EGF  E I
Sbjct: 96  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRMHEARDFESHEGFDFEGI 155

Query: 59  HMTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKF 118
           H+ R+GSD S DG L   E++TS++KRKDA+N+HDD++ GD S  KKARVVWS+DLHQKF
Sbjct: 156 HLMRNGSDHSDDGNLFAVEEITSIKKRKDADNKHDDKEFGDHSPMKKARVVWSVDLHQKF 215

Query: 119 VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSVGGIKQ 177
           VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL+RLQK+ + K+S  GIK 
Sbjct: 216 VKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQKSSSSGIKH 275

Query: 178 KDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPV 237
            DSPSKD   SF I ++      NDV+   + +S  + ++Q +DA S EG++KGI + P 
Sbjct: 276 SDSPSKD-PGSFSILDTAN-KQQNDVAIDSFSYSDGSLLLQ-MDATSHEGNLKGIVSEPT 332

Query: 238 TGHKRVLTVDIPNSHKARCSQIGFNGSFVPGH-SDVNFTSFDSAIPTQ-PWSEVSETQFQ 295
           T  +R  T DIP+    + SQ   N  F     S+ N   FD  IPTQ  WSE  +   +
Sbjct: 333 TEKRRGSTGDIPDPKIQKSSQKSLNQPFTSVESSEANHAVFDCTIPTQYSWSEFPKGPLK 392

Query: 296 HEHKPL-RLENDFTQLPL--PGPRHHIQVDCIQSGPSASSKPSVVDKD-----NLKPFDC 347
            E K L +LE+  +QLPL   G +HHI VD  QS  S +S PS+ +++       KP   
Sbjct: 393 EEQKTLVQLEDSLSQLPLHGNGTQHHIHVDQSQSIASINSNPSITEEEVAAKLETKPLYA 452

Query: 348 TYKSNYPNAI-PIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAA 406
            Y+S+Y + +  IGSAV+ FP Q+ S +VN Q  EP   +  S+K+QG N  CI DL+  
Sbjct: 453 GYESDYVSPVSSIGSAVEVFPSQSKSLMVNDQSSEPTFTSNLSLKAQGFNRDCISDLDFY 512

Query: 407 QRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTM 466
           QRN+  G   +   L+EDL    LQ +C+ MN GLQ+I+ SEY DP L +EVP H YD+ 
Sbjct: 513 QRNLLLGGEVASAPLEEDLNFFLLQTECYNMNFGLQNIDMSEYYDPRLIAEVPSHFYDSA 572

Query: 467 RFDYEHYYDPTECPIIDQGLFIA 489
             DY           +DQ LFIA
Sbjct: 573 --DYSS---------VDQSLFIA 584

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298103724|emb|CBM42563.1| putative B-type response regulator 21 [Populus x canadensis]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 269/512 (52%), Positives = 331/512 (64%), Gaps = 67/512 (13%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIE +EG ES  M
Sbjct: 95  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIEILEGIESFQM 154

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
           TR+GSDQ  DG  L GEDLT ++KRKD E++HD++D GD +S KKARVVWS++LHQKFVK
Sbjct: 155 TRNGSDQYEDGHFLCGEDLTLIKKRKDIESKHDEKDNGDNTSAKKARVVWSVELHQKFVK 214

Query: 121 AVNQIGFD------------------KVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
           AVNQIGFD                  +VGPKKILDLMNVP LTRENVASHLQKYRLYL+R
Sbjct: 215 AVNQIGFDTTSLSCFYRAMTSNVCLAEVGPKKILDLMNVPRLTRENVASHLQKYRLYLSR 274

Query: 163 LQK-DELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVD 221
           LQK ++    VG IKQ DSP  DS  SFG QNSI +    DVSNG Y FS S+ V+ NVD
Sbjct: 275 LQKGNDFNNPVGMIKQSDSPLSDSVGSFGSQNSINLQPI-DVSNGCYGFSVSSLVLHNVD 333

Query: 222 AKSLEGDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAI 281
            +S +GD K + T PV   KR LTVD PN  K R SQ+ F     P  +D          
Sbjct: 334 PRSHDGDRKILVTTPVAEPKRGLTVDAPNPRKPRISQMEFGHPLAPHFND---------- 383

Query: 282 PTQPWSEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKD- 340
                                    F+ LP+PG +   + D  Q   + SS PS+ +++ 
Sbjct: 384 ------------------------GFSHLPMPGQKQLTRADYPQPARAVSSAPSLTEREI 419

Query: 341 ----NLKPFDCTYKSNYPNAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLN 396
                +KP    Y SN  +     +AVD+ P+QT +   NHQ       +TSSM++QGLN
Sbjct: 420 GCPVKIKPSRNDYGSNASHVNSTANAVDSIPLQTKTNSTNHQ-----VSSTSSMENQGLN 474

Query: 397 LSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNS 456
           ++C+ D+E++++NIN G+      LDEDLQ+ ++ GD + M+LGLQ+I   EY DP+L +
Sbjct: 475 MNCLTDVESSRKNINLGM-PPFAPLDEDLQVRFVPGD-YYMSLGLQNIEVPEYFDPSLLT 532

Query: 457 EVPFHLYDTMRFDYEHYYDPTECPIIDQGLFI 488
           +VP HL D +RFDYE +YDPTE  +IDQ LFI
Sbjct: 533 DVPIHLNDGLRFDYE-FYDPTEYSLIDQSLFI 563

Source: Populus x canadensis

Species: Populus x canadensis

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538109|ref|XP_003537547.1| PREDICTED: two-component response regulator ARR11-like [Glycine max]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 279/503 (55%), Positives = 343/503 (68%), Gaps = 26/503 (5%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV RK+IHE ++ E+ E FESIH+
Sbjct: 95  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKRIHEAKEFESFESFESIHL 154

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
            R+GS+ S DG L   ED+TS +KRKDA+N+HDD++C D SSTKKARVVWS+DLHQKFVK
Sbjct: 155 MRNGSELSDDGNLFAVEDVTSTKKRKDADNKHDDKECLDPSSTKKARVVWSVDLHQKFVK 214

Query: 121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSVGGIKQKD 179
           AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL+R+QK+ + ++S  G+K  D
Sbjct: 215 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGLKHSD 274

Query: 180 SPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTG 239
            P KD   SFG QNS+     NDV+   Y  S  +  +QNV+ KS E D KGI +     
Sbjct: 275 FPLKD-MRSFGFQNSVNNQQQNDVAIDSYNHSDGSLQLQNVETKSHEADPKGIVSQSTIA 333

Query: 240 HK-RVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPT-QPWSEVSETQFQHE 297
            K R+LT +I +++     ++G N +F P  S+ N   FD ++PT   W+EV   Q + E
Sbjct: 334 KKGRILTGNIADTNMRESLRVGLNQTFAPLESEENHAVFDCSMPTPYTWTEVPHMQLKEE 393

Query: 298 HKPL-RLENDFTQLPLPGP-RHHIQVDCIQSGPSASSKPSVVDKD-----NLKPFDCTYK 350
           HK +  LE+ F QLPL G  + HIQVD  QS  S SS P + +++       KP    YK
Sbjct: 394 HKSIVHLEDSFNQLPLHGKQQQHIQVDQSQSVASISSAPLITEEEVAACKEPKPLFADYK 453

Query: 351 SNYPNAI-PIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGL-NLSCIPDLEAAQR 408
           ++Y N++  IG+AV TFP+Q  S I+N Q  EPI+ T S +K+QG  NLS I DLE  Q 
Sbjct: 454 NDYANSVSSIGNAVGTFPIQPGSLIMNGQSSEPISTTNSGLKTQGYNNLSSISDLEIYQS 513

Query: 409 NINWGVG-SSLTSLDEDLQLCWLQGDCF-AMNLGLQDINFSEYNDPALNSEVPFHLYDTM 466
           N+  G   +S  SLDEDL   WLQG+C+  MN  LQ+I  SEY DP L SE P HLYD+ 
Sbjct: 514 NLLLGGEVASAPSLDEDLHFYWLQGECYNNMNFSLQNIGMSEYYDPGLISEAPTHLYDSA 573

Query: 467 RFDYEHYYDPTECPIIDQGLFIA 489
             DY          +IDQGLFIA
Sbjct: 574 --DYS---------VIDQGLFIA 585

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569201|ref|XP_003552793.1| PREDICTED: two-component response regulator ARR11-like [Glycine max]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 269/496 (54%), Positives = 333/496 (67%), Gaps = 40/496 (8%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETS+VMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHE ++ E+   FESIH+
Sbjct: 95  MSVDGETSKVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEAKEFES---FESIHL 151

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
            R+GS+ S DG L   ED+TS +KRKDA+++HDD++C D SSTKKARVVWS+DLHQKFVK
Sbjct: 152 MRNGSELSDDGNLFAVEDVTSSKKRKDADSKHDDKECLDPSSTKKARVVWSVDLHQKFVK 211

Query: 121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSVGGIKQKD 179
           AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL+R+QK+ + ++S  G+K  D
Sbjct: 212 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRIQKENDQRSSSSGMKHSD 271

Query: 180 SPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTG 239
            PSKD   SFG QNS+ +   NDV+   Y  S  +  +QNV+ KS E D KGI +     
Sbjct: 272 FPSKD-MGSFGFQNSV-IKQQNDVAIDNYNHSDGSLQLQNVETKSHEADPKGIVSQSTIA 329

Query: 240 HK-RVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPT-QPWSEVSETQFQHE 297
            K R+LT +I +++     ++G N +F P  S+ N   FD ++PT   W+EV   Q + E
Sbjct: 330 KKGRILTGNIADTNMRESLRVGLNQTFPPLESEGNHAVFDCSMPTPYSWTEVPHMQLKEE 389

Query: 298 HKPL-RLENDFTQLPLPGP-RHHIQVDCIQSGPSASSKPSVVDKDNLKPFDCTYKSNYPN 355
           HK L  LE+ F QLPL G  + HI VD  QS  S SS PS+ +++               
Sbjct: 390 HKSLVYLEDSFNQLPLHGKQQQHIHVDQSQSVASISSAPSITEEE--------------- 434

Query: 356 AIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGL-NLSCIPDLEAAQRNINWGV 414
                +AV TFP+Q  S I+N Q  E I+ TTS +K+Q   NLS I D E  QRN+  G 
Sbjct: 435 -AAAWNAVATFPIQPGSLIMNGQSSERISTTTSGLKTQEYNNLSSISDQEIYQRNL-LGC 492

Query: 415 GSSLTSLDEDLQLCWLQGDCF-AMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDYEHY 473
            ++  SLDEDL   WL+G+C+  MN GLQ+I  SEY DP L SE P HLYD+   DY   
Sbjct: 493 EAASASLDEDLHFYWLEGECYNNMNFGLQNIGMSEYYDPGLISEAPIHLYDSA--DYS-- 548

Query: 474 YDPTECPIIDQGLFIA 489
                  ++DQGLFIA
Sbjct: 549 -------VMDQGLFIA 557

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463135|ref|XP_003601849.1| Response regulator [Medicago truncatula] gi|355490897|gb|AES72100.1| Response regulator [Medicago truncatula]

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 268/499 (53%), Positives = 328/499 (65%), Gaps = 33/499 (6%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK+IHEVR+ EN E FES+H+
Sbjct: 95  MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHL 154

Query: 61  TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
            R+GS+ S +G L   ED+TS +KRKD ++RHDD++  D+SS+KKARVVWS+DLHQKFVK
Sbjct: 155 MRNGSEMSEEGNLFALEDMTSTKKRKDVDSRHDDKEFLDSSSSKKARVVWSVDLHQKFVK 214

Query: 121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSVGGIKQKD 179
           AVNQIGFDKVGPKKILDLMNVPWL+RENVASHLQKYRLYL+RLQKD E K+S  G+K  D
Sbjct: 215 AVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSD 274

Query: 180 SPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGIDTIPVTG 239
            PSKD   +FG  NS      ND S   Y +S  +   QN++ KS EG+ KGI       
Sbjct: 275 LPSKD-VGNFGFPNSAN-KQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVPHSTAA 332

Query: 240 HK-RVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPT-QPWSEVSETQFQHE 297
            K R LT +I ++     +    N  F P  S+    +FD  + T   W+E+ +TQ + E
Sbjct: 333 EKARALTGNITDA-----TDTALNKPFAPLESERKRGAFDCNMSTPYSWTEIPKTQLKKE 387

Query: 298 HKP-LRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKD-----NLKPFDCTYKS 351
            K  + LE+ F  LPL G +H+IQVD  QS  S SS PS+ ++D       KP    YK 
Sbjct: 388 QKSVVHLEDKFNLLPLNGKQHNIQVDQSQSIASISSTPSITEQDVAACVETKPTFSDYKK 447

Query: 352 NYP-NAIPIGSAVDTFPVQTTSPIVNHQPFEPIARTTSSMKSQGLNLSCIPDLEAAQRNI 410
           +Y  +   I S+VDTFP Q  S ++N QP +PI+ T   +K+Q  NLSCI DLE+ QRN+
Sbjct: 448 DYTSSVSSIRSSVDTFPFQPGSLMMNDQPTQPISTTNFGLKTQTSNLSCISDLESYQRNL 507

Query: 411 NWGVGSSLTSLDEDLQLCWLQGDCFAMNLGLQDINFSEYNDPALNSEVPFHLYDTMRFDY 470
             G  ++   LDEDL   W       MN G Q+I  SEY DP L  EVP HLYD+   DY
Sbjct: 508 LLGGEAASAPLDEDLYFYW-----HNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSA--DY 560

Query: 471 EHYYDPTECPIIDQGLFIA 489
                     +IDQGLFIA
Sbjct: 561 S---------VIDQGLFIA 570

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
TAIR|locus:2008585	521	ARR11 "response regulator 11"	0.488	0.458	0.537	1.8e-74
TAIR|locus:2065398	382	RR14 "response regulator 14" [	0.329	0.421	0.520	9.5e-42
TAIR|locus:2040194	596	RR12 "response regulator 12" [	0.431	0.354	0.417	4.1e-38
TAIR|locus:2130095	664	RR2 "response regulator 2" [Ar	0.329	0.242	0.526	4e-37
TAIR|locus:2093668	690	RR1 "response regulator 1" [Ar	0.251	0.178	0.522	3.5e-34
TAIR|locus:2116587	552	RR10 "response regulator 10" [	0.406	0.360	0.374	3.8e-29
UNIPROTKB|Q7Y0W3	341	Q7Y0W3 "Two-component response	0.327	0.469	0.396	8.3e-26
UNIPROTKB|Q7Y0W5	341	EHD1 "Two-component response r	0.327	0.469	0.396	8.3e-26
TAIR|locus:2155954	292	APRR4 "pseudo-response regulat	0.310	0.520	0.4	1.1e-23
TAIR|locus:2141020	535	APRR2 [Arabidopsis thaliana (t	0.206	0.188	0.379	5.8e-15

TAIR|locus:2008585 ARR11 "response regulator 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 599 (215.9 bits), Expect = 1.8e-74, Sum P(2) = 1.8e-74
 Identities = 145/270 (53%), Positives = 176/270 (65%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFE--SI 58
             MSVDGETSRVMKGVQHGACDYLLKPIRMKEL+ IWQHV RKK+ EVRDIE   G+E  + 
Sbjct:    89 MSVDGETSRVMKGVQHGACDYLLKPIRMKELKIIWQHVLRKKLQEVRDIEGC-GYEGGAD 147

Query:    59 HMTRSGSDQSVDGPLLTGEDLTSVRKRKDA--ENR--HDDRDCGDASSTKKARVVWSIDL 114
              +TR      + G    GED++  +KRKD   E +   D+ D   +SS+KKARVVWS +L
Sbjct:   148 WITRYDEAHFLGG----GEDVSFGKKRKDFDFEKKLLQDESD-PSSSSSKKARVVWSFEL 202

Query:   115 HQKFVKAVNQIGFD-KVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD-ELKTSV 172
             H KFV AVNQIG D K GPKKILDLMNVPWLTRENVASHLQKYRLYL+RL+K  ELK   
Sbjct:   203 HHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLEKGKELKCYS 262

Query:   173 GGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEGDVKGI 232
             GG+K  DS  KD   + G Q+              Y FSG NS++Q    K+ E D K +
Sbjct:   263 GGVKNADSSPKDVEVNSGYQSP---------GRSSYVFSGGNSLIQ----KATEIDPKPL 309

Query:   233 DTIPVTGHKRVLTVDIPNSHKARCSQIGFN 262
              +  ++     L  D+    K + ++IGF+
Sbjct:   310 ASASLSD----LNTDVIMPPKTKKTRIGFD 335

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2065398 RR14 "response regulator 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 89/171 (52%), Positives = 117/171 (68%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
             MSVDG T+ VM G+ HGACDYL+KPIR +EL+NIWQHV R+K    +++ + +  E    
Sbjct:    90 MSVDGRTTTVMTGINHGACDYLIKPIRPEELKNIWQHVVRRKCVMKKELRSSQALED--N 147

Query:    61 TRSGSDQSVDGPL--LTGEDLTSVRKRKDAENRHDDRDCG------DASSTKKARVVWSI 112
               SGS ++V   +   + E L   R +K  + R  DRD        D  ++KK+RVVWSI
Sbjct:   148 KNSGSLETVVVSVSECSEESLMKCRNKKKKKKRSVDRDDNEDDLLLDPGNSKKSRVVWSI 207

Query:   113 DLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163
             +LHQ+FV AVN++G DK  PK+IL+LMNVP L+RENVASHLQK+RLYL RL
Sbjct:   208 ELHQQFVNAVNKLGIDKAVPKRILELMNVPGLSRENVASHLQKFRLYLKRL 258

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2040194 RR12 "response regulator 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 4.1e-38, P = 4.1e-38
 Identities = 96/230 (41%), Positives = 133/230 (57%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
             +S   +   VMKGV HGACDYLLKP+R++EL+NIWQHV R +  + R   N  G +    
Sbjct:    95 LSAHSDPKYVMKGVTHGACDYLLKPVRIEELKNIWQHVVRSRFDKNRGSNN-NGDKR--- 150

Query:    61 TRSGSDQSVDGPLLTGEDLTSVRKRKDA--ENRHDDRDCGDAS-STKKARVVWSIDLHQK 117
               SG++   +     G+     RKRKD   E+  +DRD  D S + KK RVVW+++LH+K
Sbjct:   151 DGSGNEGVGNSDQNNGK---GNRKRKDQYNEDEDEDRDDNDDSCAQKKQRVVWTVELHKK 207

Query:   118 FVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQ 177
             FV AVNQ+G++K  PKKILDLMNV  LTRENVASHLQK+RLYL R         + G+  
Sbjct:   208 FVAAVNQLGYEKAMPKKILDLMNVEKLTRENVASHLQKFRLYLKR---------ISGVAN 258

Query:   178 KDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLEG 227
             + +   +S   F   N +   HH  +  G  ++ G    +++     + G
Sbjct:   259 QQAIMANSELHFMQMNGLDGFHHRPIPVGSGQYHGGAPAMRSFPPNGILG 308

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

TAIR|locus:2130095 RR2 "response regulator 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 4.0e-37, P = 4.0e-37
 Identities = 90/171 (52%), Positives = 116/171 (67%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIEN----IE--G 54
             MS D   S V+KGV HGA DYL+KP+R++ L+NIWQHV RKK +E    E+    IE  G
Sbjct:   106 MSADDSKSVVLKGVTHGAVDYLIKPVRIEALKNIWQHVVRKKRNEWNVSEHSGGSIEDTG 165

Query:    55 FESIHMTRSGSDQSVDGPLLTGEDLTSVRKRKDAE--NRHDDRDCGDASSTKKARVVWSI 112
              +     +   D   +   +   +  S RKRK+ E  ++ DD++  D+SS KK RVVWS+
Sbjct:   166 GDRDRQQQHREDADNNSSSVNEGNGRSSRKRKEEEVDDQGDDKE--DSSSLKKPRVVWSV 223

Query:   113 DLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL 163
             +LHQ+FV AVNQ+G DK  PKKIL++MNVP LTRENVASHLQKYR+YL RL
Sbjct:   224 ELHQQFVAAVNQLGVDKAVPKKILEMMNVPGLTRENVASHLQKYRIYLRRL 274

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IEP;IGI

GO:0010150 "leaf senescence" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0007623 "circadian rhythm" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2093668 RR1 "response regulator 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 3.5e-34, Sum P(2) = 3.5e-34
 Identities = 70/134 (52%), Positives = 87/134 (64%)

Query:    63 SGSDQSVD---GPLLTGEDL-TSVRKRKDAENRH--DDRDCGDASSTKKARVVWSIDLHQ 116
             SG + +VD     +  G +  +S RKRKD E     DD+D  DAS+ KK RVVWS++LHQ
Sbjct:   190 SGGEDAVDDNSSSVNEGNNWRSSSRKRKDEEGEEQGDDKD-EDASNLKKPRVVWSVELHQ 248

Query:   117 KFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIK 176
             +FV AVNQ+G +K  PKKIL+LMNVP LTRENVASHLQKYR+YL RL    +    G + 
Sbjct:   249 QFVAAVNQLGVEKAVPKKILELMNVPGLTRENVASHLQKYRIYLRRL--GGVSQHQGNLN 306

Query:   177 QKDSPSKDSAASFG 190
                   +D  ASFG
Sbjct:   307 NSFMTGQD--ASFG 318

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

TAIR|locus:2116587 RR10 "response regulator 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 341 (125.1 bits), Expect = 3.8e-29, P = 3.8e-29
 Identities = 82/219 (37%), Positives = 124/219 (56%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
             +S   +   VMKGV+HGACDYLLKP+R++EL+NIWQHV RK   + ++  N+        
Sbjct:    95 LSAHSDPKYVMKGVKHGACDYLLKPVRIEELKNIWQHVVRKSKLK-KNKSNVS------- 146

Query:    61 TRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFVK 120
               +GS           E      + ++ E R +D D  D ++ KK RV+W+ +LH KF+ 
Sbjct:   147 --NGSGNCDKANRKRKEQY----EEEEEEERGNDND--DPTAQKKPRVLWTHELHNKFLA 198

Query:   121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKDELKTSVGGIKQKDS 180
             AV+ +G ++  PKKILDLMNV  LTRENVASHLQK+R+ L ++  D ++ +       DS
Sbjct:   199 AVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVSDDAIQQA--NRAAIDS 256

Query:   181 PSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQN 219
                   +  G+      HHH  +  G  +F G  +++++
Sbjct:   257 HFMQMNSQKGLGGFY--HHHRGIPVGSGQFHGGTTMMRH 293

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009736 "cytokinin mediated signaling pathway" evidence=IGI;RCA;TAS

GO:0009735 "response to cytokinin stimulus" evidence=IGI

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IGI

GO:0031537 "regulation of anthocyanin metabolic process" evidence=IGI;RCA

GO:0048367 "shoot system development" evidence=IGI

GO:0080022 "primary root development" evidence=IGI

GO:0010029 "regulation of seed germination" evidence=RCA

GO:0048831 "regulation of shoot system development" evidence=RCA

UNIPROTKB|Q7Y0W3 Q7Y0W3 "Two-component response regulator EHD1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 296 (109.3 bits), Expect = 8.3e-26, P = 8.3e-26
 Identities = 67/169 (39%), Positives = 100/169 (59%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRD---IENIE--GF 55
             M+  G+T+ VMK V +GA D+LLKP+R++EL NIWQH+FRK++ + ++   + N+E  G 
Sbjct:    89 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 148

Query:    56 ESIHMTRSGSDQSVDGPLLTGEDLTSVRK--RKDAENRHDDRDCGDASSTKKARVVWSID 113
                 +  + +  +      T   L  +    R D  N + +    D     K+R+ W+  
Sbjct:   149 PPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGE--ITDIRDLGKSRLTWTTQ 206

Query:   114 LHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
             LH++F+ AVN +G DK  PKKIL +M V  LTRE VASHLQKYR+ L +
Sbjct:   207 LHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255

GO:0003677 "DNA binding" evidence=IDA

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

UNIPROTKB|Q7Y0W5 EHD1 "Two-component response regulator EHD1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 296 (109.3 bits), Expect = 8.3e-26, P = 8.3e-26
 Identities = 67/169 (39%), Positives = 100/169 (59%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRD---IENIE--GF 55
             M+  G+T+ VMK V +GA D+LLKP+R++EL NIWQH+FRK++ + ++   + N+E  G 
Sbjct:    89 MASSGDTNTVMKYVANGAFDFLLKPVRIEELSNIWQHIFRKQMQDHKNNNMVGNLEKPGH 148

Query:    56 ESIHMTRSGSDQSVDGPLLTGEDLTSVRK--RKDAENRHDDRDCGDASSTKKARVVWSID 113
                 +  + +  +      T   L  +    R D  N + +    D     K+R+ W+  
Sbjct:   149 PPSILAMARATPATTRSTATEASLAPLENEVRDDMVNYNGE--ITDIRDLGKSRLTWTTQ 206

Query:   114 LHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR 162
             LH++F+ AVN +G DK  PKKIL +M V  LTRE VASHLQKYR+ L +
Sbjct:   207 LHRQFIAAVNHLGEDKAVPKKILGIMKVKHLTREQVASHLQKYRMQLKK 255

GO:0048576 "positive regulation of short-day photoperiodism, flowering" evidence=IMP

TAIR|locus:2155954 APRR4 "pseudo-response regulator 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 62/155 (40%), Positives = 94/155 (60%)

Query:     1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESI-H 59
             +S D     V K + +GA DYL+KPIR ++LR +++H+  KK+ E R +   E  ++   
Sbjct:   120 ISEDDSVKSVKKWMINGAADYLIKPIRPEDLRIVFKHLV-KKMRERRSVVTGEAEKAAGE 178

Query:    60 MTRSGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKFV 119
              + S  D ++  P  +    + +    + E+RHD  D   ASS KK RVVW  +LHQ F+
Sbjct:   179 KSSSVGDSTIRNPNKSKRS-SCLEAEVNEEDRHDHNDRACASSAKKRRVVWDEELHQNFL 237

Query:   120 KAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQ 154
              AV+ +G ++  PKKILD+M V +++RENVASHLQ
Sbjct:   238 NAVDFLGLERAVPKKILDVMKVDYISRENVASHLQ 272

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2141020 APRR2 [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
 Identities = 41/108 (37%), Positives = 66/108 (61%)

Query:    66 DQSVDGPLLTGE-DLTSVRKRKDAENRHDDRDCG----DASSTKKARVVWSIDLHQKFVK 120
             ++   G L++ + D   + K++D E +  ++  G      + T + +V W+ +LH+KFV+
Sbjct:   253 EEGETGDLISEKTDSVDIHKKED-ETKPINKSSGIKNVSGNKTSRKKVDWTPELHKKFVQ 311

Query:   121 AVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTR-LQKDE 167
             AV Q+G D+  P +IL+LM V  LTR NVASHLQK+R +    L KD+
Sbjct:   312 AVEQLGVDQAIPSRILELMKVGTLTRHNVASHLQKFRQHRKNILPKDD 359

GO:0000156 "phosphorelay response regulator activity" evidence=IEA;ISS

GO:0000160 "phosphorelay signal transduction system" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=RCA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FXD6	ARR11_ARATH	No assigned EC number	0.4271	0.8609	0.8080	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: RRb5 SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (594 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	489
TIGR01557	57	TIGR01557, myb_SHAQKYF, myb-like DNA-binding domai	1e-18
PLN03162	526	PLN03162, PLN03162, golden-2 like transcription fa	2e-14
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	2e-05

>gnl|CDD|130620 TIGR01557, myb_SHAQKYF, myb-like DNA-binding domain, SHAQKYF class

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 33/55 (60%), Positives = 42/55 (76%), Gaps = 1/55 (1%)

Query: 105 KARVVWSIDLHQKFVKAVNQIG-FDKVGPKKILDLMNVPWLTRENVASHLQKYRL 158
           K RVVW+ DLH +F++AV ++G  D   PK+IL+LM V  LTR+ VASHLQKYRL
Sbjct: 1   KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL 55

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif. Length = 57

>gnl|CDD|178707 PLN03162, PLN03162, golden-2 like transcription factor; Provisional

 Score = 75.2 bits (184), Expect = 2e-14
 Identities = 37/80 (46%), Positives = 53/80 (66%), Gaps = 1/80 (1%)

Query: 89  ENRHDDRDCGDAS-STKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRE 147
           +N+   + C +A+   KKA+V W+ +LH++FV AV Q+G +K  P +IL+LM V  LTR 
Sbjct: 218 DNQASPKSCKNAAPGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRH 277

Query: 148 NVASHLQKYRLYLTRLQKDE 167
           N+ASHLQKYR +   L   E
Sbjct: 278 NIASHLQKYRSHRRHLAARE 297

Length = 526

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 41.7 bits (99), Expect = 2e-05
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYR 157
           R  W+ +  +  ++AV + G       KI   +  P  T     +    Y 
Sbjct: 1   RGPWTPEEDELLIEAVKKHGNGN--WSKIAKHL--PGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	489
PLN03162	526	golden-2 like transcription factor; Provisional	99.86
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	99.74
COG4565	224	CitB Response regulator of citrate/malate metaboli	99.31
COG0745	229	OmpR Response regulators consisting of a CheY-like	97.81
COG2204	464	AtoC Response regulator containing CheY-like recei	97.11
COG4566	202	TtrR Response regulator [Signal transduction mecha	97.04
PRK10046	225	dpiA two-component response regulator DpiA; Provis	96.73
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	96.08
PRK10529	225	DNA-binding transcriptional activator KdpE; Provis	95.72
COG4753	475	Response regulator containing CheY-like receiver d	95.7
PRK11173	237	two-component response regulator; Provisional	95.68
PRK10766	221	DNA-binding transcriptional regulator TorR; Provis	95.66
COG4567	182	Response regulator consisting of a CheY-like recei	95.58
PRK09836	227	DNA-binding transcriptional activator CusR; Provis	95.49
TIGR03787	227	marine_sort_RR proteobacterial dedicated sortase s	95.47
PRK10816	223	DNA-binding transcriptional regulator PhoP; Provis	95.45
PRK10643	222	DNA-binding transcriptional regulator BasR; Provis	95.24
PRK10161	229	transcriptional regulator PhoB; Provisional	95.11
PRK10336	219	DNA-binding transcriptional regulator QseB; Provis	95.01
PRK09468	239	ompR osmolarity response regulator; Provisional	94.98
PRK10701	240	DNA-binding transcriptional regulator RstA; Provis	94.82
PRK10955	232	DNA-binding transcriptional regulator CpxR; Provis	94.8
CHL00148	240	orf27 Ycf27; Reviewed	94.8
PRK11517	223	transcriptional regulatory protein YedW; Provision	94.71
PRK13856	241	two-component response regulator VirG; Provisional	94.6
PRK09581	457	pleD response regulator PleD; Reviewed	94.56
TIGR01387	218	cztR_silR_copR heavy metal response regulator. Mem	94.51
TIGR02154	226	PhoB phosphate regulon transcriptional regulatory	94.49
PRK11083	228	DNA-binding response regulator CreB; Provisional	94.45
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	94.23
COG3437	360	Response regulator containing a CheY-like receiver	94.22
PLN03029	222	type-a response regulator protein; Provisional	94.2
PRK10360	196	DNA-binding transcriptional activator UhpA; Provis	94.19
PRK10693	303	response regulator of RpoS; Provisional	94.08
PRK09958	204	DNA-binding transcriptional activator EvgA; Provis	94.0
PRK10430	239	DNA-binding transcriptional activator DcuR; Provis	93.82
COG3706	435	PleD Response regulator containing a CheY-like rec	93.66
PRK10610	129	chemotaxis regulatory protein CheY; Provisional	93.63
PRK15479	221	transcriptional regulatory protein TctD; Provision	93.36
PRK09935	210	transcriptional regulator FimZ; Provisional	93.35
PRK10840	216	transcriptional regulator RcsB; Provisional	93.15
TIGR02875	262	spore_0_A sporulation transcription factor Spo0A.	93.11
COG3707	194	AmiR Response regulator with putative antiterminat	92.14
PRK10710	240	DNA-binding transcriptional regulator BaeR; Provis	92.04
PRK11475	207	DNA-binding transcriptional activator BglJ; Provis	91.51
PRK09483	217	response regulator; Provisional	91.45
PRK09581	457	pleD response regulator PleD; Reviewed	91.33
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	90.55
smart00426	68	TEA TEA domain.	90.43
PRK10403	215	transcriptional regulator NarP; Provisional	90.37
PRK15369	211	two component system sensor kinase SsrB; Provision	90.29
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	90.17
COG0784	130	CheY FOG: CheY-like receiver [Signal transduction	90.04
COG2197	211	CitB Response regulator containing a CheY-like rec	90.03
PRK13435	145	response regulator; Provisional	89.62
PRK15115	444	response regulator GlrR; Provisional	89.51
PRK11697	238	putative two-component response-regulatory protein	89.27
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	89.19
PRK11107	919	hybrid sensory histidine kinase BarA; Provisional	89.15
PRK14084	246	two-component response regulator; Provisional	88.95
PRK10365	441	transcriptional regulatory protein ZraR; Provision	88.73
PRK10651	216	transcriptional regulator NarL; Provisional	88.53
PRK15347	921	two component system sensor kinase SsrA; Provision	88.13
PRK11466	914	hybrid sensory histidine kinase TorS; Provisional	86.62
PRK09390	202	fixJ response regulator FixJ; Provisional	85.39
TIGR02956	968	TMAO_torS TMAO reductase sytem sensor TorS. This p	84.8
cd00156	113	REC Signal receiver domain; originally thought to	84.76
PRK09959	1197	hybrid sensory histidine kinase in two-component r	83.72

>PLN03162 golden-2 like transcription factor; Provisional

Probab=99.86  E-value=2e-22  Score=205.58  Aligned_cols=67  Identities=51%  Similarity=0.778  Sum_probs=63.0

Q ss_pred             CCccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhhhhh
Q 011273          100 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRLQKD  166 (489)
Q Consensus       100 ~~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~~~~  166 (489)
                      ....||+|++||+|||++||+||++||++|||||+||++|+|+||||+||||||||||++++++...
T Consensus       230 ~~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~r  296 (526)
T PLN03162        230 APGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAR  296 (526)
T ss_pred             CCCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccch
Confidence            3458999999999999999999999999999999999999999999999999999999999986544

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=99.74  E-value=1.7e-18  Score=136.31  Aligned_cols=55  Identities=60%  Similarity=0.914  Sum_probs=52.9

Q ss_pred             cceEecchhHHHHHHHHHHHhCC-CCCChHHHHhhcCCCcchHHHHHHhhhhhhhh
Q 011273          105 KARVVWSIDLHQKFVKAVNQIGF-DKVGPKKILDLMNVPWLTRENVASHLQKYRLY  159 (489)
Q Consensus       105 K~R~~WT~eLH~~Fv~AV~~LG~-~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~  159 (489)
                      |+|+.||+|+|.+|++|++.+|. +.||||+|+++|++++||+.||+|||||||+.
T Consensus         1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k   56 (57)
T TIGR01557         1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK   56 (57)
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence            68999999999999999999995 99999999999999999999999999999974

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]

Probab=99.31  E-value=3.2e-13  Score=131.16  Aligned_cols=121  Identities=15%  Similarity=0.280  Sum_probs=96.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh-cccccccccccccccccCCCCCCCCCCCCccCCcc
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH-EVRDIENIEGFESIHMTRSGSDQSVDGPLLTGEDL   79 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~-~~~~~~~~e~vds~q~~~~gs~~~~~g~~~~~~~~   79 (489)
                      +||.++.+++..|+++||+|||+|||.+++|.+.+.++.+++.. .+....+|+.+|.+                  .+.
T Consensus        80 iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l~~~~~~sQ~~lD~l------------------~~~  141 (224)
T COG4565          80 ITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHALESHQQLSQKELDQL------------------FNI  141 (224)
T ss_pred             EeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHH------------------Hhc
Confidence            58999999999999999999999999999999999999888766 55566777777765                  222


Q ss_pred             ccccccccccccCCCCCCCCCCccccceEecchhHHHHH--HHHHHHhCCCCCChHHHHhhcCCCcch
Q 011273           80 TSVRKRKDAENRHDDRDCGDASSTKKARVVWSIDLHQKF--VKAVNQIGFDKVGPKKILDLMNVPWLT  145 (489)
Q Consensus        80 ~s~kKRKd~~~kg~D~~~~d~~t~kK~R~~WT~eLH~~F--v~AV~~LG~~kAtPKrILElM~v~gLT  145 (489)
                      .++...++..+||+++.     |+.+++-.+. +..+.|  .++.+.+|++++|.|||||+|...|+-
T Consensus       142 ~~k~~~~~~LPkGi~~~-----Tl~~i~~~~~-~~~~~~Taeela~~~giSRvTaRRYLeyl~~~~~l  203 (224)
T COG4565         142 QSKEQPPDDLPKGLDEL-----TLQKVREALK-EPDQELTAEELAQALGISRVTARRYLEYLVSNGIL  203 (224)
T ss_pred             cccccCcccCCCCcCHH-----HHHHHHHHHh-CcCCccCHHHHHHHhCccHHHHHHHHHHHHhcCee
Confidence            22333344555787665     8888876665 445677  899999999999999999999876653

>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=97.81  E-value=1.8e-05  Score=77.67  Aligned_cols=44  Identities=25%  Similarity=0.447  Sum_probs=41.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +||.++..+.+.++++||+|||.|||+++||.++++.++|+...
T Consensus        78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~~  121 (229)
T COG0745          78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNAG  121 (229)
T ss_pred             EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCcC
Confidence            58899999999999999999999999999999999999988754

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=97.11  E-value=0.00054  Score=74.15  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=41.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      ||++++.+++..|++.||+|||.|||++++|...+++++..+..
T Consensus        82 ~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~  125 (464)
T COG2204          82 MTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL  125 (464)
T ss_pred             EeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence            79999999999999999999999999999999999999976543

>COG4566 TtrR Response regulator [Signal transduction mechanisms]

Probab=97.04  E-value=0.00043  Score=67.23  Aligned_cols=44  Identities=18%  Similarity=0.419  Sum_probs=40.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      ||+++++....+|++.||.|||.|||+..+|...+++++++...
T Consensus        82 iTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~~~  125 (202)
T COG4566          82 LTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARDAS  125 (202)
T ss_pred             EeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999877543

>PRK10046 dpiA two-component response regulator DpiA; Provisional

Probab=96.73  E-value=0.0025  Score=60.74  Aligned_cols=43  Identities=26%  Similarity=0.438  Sum_probs=37.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+...+.+++++||.+||.||++.++|...++++.+.+.
T Consensus        84 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~  126 (225)
T PRK10046         84 TTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKH  126 (225)
T ss_pred             EEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHH
Confidence            3677788899999999999999999999999999998875543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=96.08  E-value=0.0097  Score=44.60  Aligned_cols=48  Identities=29%  Similarity=0.307  Sum_probs=41.2

Q ss_pred             eEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhh
Q 011273          107 RVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYR  157 (489)
Q Consensus       107 R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR  157 (489)
                      |..||.+-+.+|++||.+.|..  .-++|.+.|. .+-|..++++|.++|+
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence            4679999999999999999944  5788999988 8999999999999985

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PRK10529 DNA-binding transcriptional activator KdpE; Provisional

Probab=95.72  E-value=0.015  Score=53.69  Aligned_cols=42  Identities=31%  Similarity=0.486  Sum_probs=37.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...+++++||++||.||++.++|..+++.++++.
T Consensus        78 lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~  119 (225)
T PRK10529         78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH  119 (225)
T ss_pred             EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            356777888899999999999999999999999999988764

>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]

Probab=95.70  E-value=0.01  Score=64.66  Aligned_cols=44  Identities=30%  Similarity=0.380  Sum_probs=40.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|++++.+.+.+|+++|+.|||+||++..+|...+.++..+...
T Consensus        82 LSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~~  125 (475)
T COG4753          82 LSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLEE  125 (475)
T ss_pred             EeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999876544

>PRK11173 two-component response regulator; Provisional

Probab=95.68  E-value=0.015  Score=54.64  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=37.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+......++++||++||.||++.++|..++++++++..
T Consensus        81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~~  122 (237)
T PRK11173         81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRTM  122 (237)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhccc
Confidence            566777788899999999999999999999999999987753

>PRK10766 DNA-binding transcriptional regulator TorR; Provisional

Probab=95.66  E-value=0.015  Score=53.50  Aligned_cols=41  Identities=22%  Similarity=0.395  Sum_probs=36.7

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ++..+.....+++++||++||.||++.++|..+++.++++.
T Consensus        80 ~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~  120 (221)
T PRK10766         80 TGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI  120 (221)
T ss_pred             ECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence            56677788889999999999999999999999999988764

>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]

Probab=95.58  E-value=0.0075  Score=57.26  Aligned_cols=37  Identities=24%  Similarity=0.464  Sum_probs=33.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQH   37 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~   37 (489)
                      +|+++++.+.+.|+++|||+||.||-+.+++...+..
T Consensus        87 LTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~  123 (182)
T COG4567          87 LTGYASIATAVEAVKLGACDYLAKPADADDILAALLR  123 (182)
T ss_pred             EecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHhh
Confidence            5899999999999999999999999999998766643

>PRK09836 DNA-binding transcriptional activator CusR; Provisional

Probab=95.49  E-value=0.02  Score=53.12  Aligned_cols=41  Identities=32%  Similarity=0.546  Sum_probs=36.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.+....++++||++||.||++.++|..+++.++++
T Consensus        78 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~  118 (227)
T PRK09836         78 LTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR  118 (227)
T ss_pred             EEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence            35677888899999999999999999999999999998765

>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator

Probab=95.47  E-value=0.023  Score=52.56  Aligned_cols=42  Identities=26%  Similarity=0.423  Sum_probs=37.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+....++++||++||.||++.++|..+++.++++.
T Consensus        80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  121 (227)
T TIGR03787        80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA  121 (227)
T ss_pred             EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence            356777888899999999999999999999999999988764

This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.

>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional

Probab=95.45  E-value=0.02  Score=52.95  Aligned_cols=41  Identities=22%  Similarity=0.363  Sum_probs=36.6

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+......++++||++||.||++.++|..+++.++++.
T Consensus        79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~  119 (223)
T PRK10816         79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN  119 (223)
T ss_pred             EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence            56677788899999999999999999999999999988763

>PRK10643 DNA-binding transcriptional regulator BasR; Provisional

Probab=95.24  E-value=0.028  Score=51.24  Aligned_cols=42  Identities=26%  Similarity=0.506  Sum_probs=37.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+......++++||.+||.||++.++|..+++.++++.
T Consensus        78 ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~  119 (222)
T PRK10643         78 LTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH  119 (222)
T ss_pred             EECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence            356777888999999999999999999999999999887654

>PRK10161 transcriptional regulator PhoB; Provisional

Probab=95.11  E-value=0.032  Score=51.79  Aligned_cols=40  Identities=35%  Similarity=0.582  Sum_probs=36.1

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+.....+++++||.+||.||++.++|..+++.++++
T Consensus        83 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~  122 (229)
T PRK10161         83 TARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR  122 (229)
T ss_pred             ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence            5667778889999999999999999999999999998875

>PRK10336 DNA-binding transcriptional regulator QseB; Provisional

Probab=95.01  E-value=0.035  Score=50.66  Aligned_cols=42  Identities=24%  Similarity=0.470  Sum_probs=36.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+......++++||.+||.||++.++|..+++.++++.
T Consensus        78 lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~  119 (219)
T PRK10336         78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT  119 (219)
T ss_pred             EECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence            356677788899999999999999999999999999887654

>PRK09468 ompR osmolarity response regulator; Provisional

Probab=94.98  E-value=0.031  Score=52.42  Aligned_cols=41  Identities=34%  Similarity=0.536  Sum_probs=36.4

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ++..+......++++||++||.||++.++|..+++.++++.
T Consensus        84 s~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~  124 (239)
T PRK09468         84 TAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ  124 (239)
T ss_pred             ECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence            55677788889999999999999999999999999988764

>PRK10701 DNA-binding transcriptional regulator RstA; Provisional

Probab=94.82  E-value=0.041  Score=51.71  Aligned_cols=41  Identities=22%  Similarity=0.316  Sum_probs=35.8

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ++..+......++++||++||.||++..+|..+++.++++.
T Consensus        79 ~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~  119 (240)
T PRK10701         79 TSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN  119 (240)
T ss_pred             ECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence            45566777889999999999999999999999999988764

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional

Probab=94.80  E-value=0.041  Score=50.78  Aligned_cols=42  Identities=29%  Similarity=0.479  Sum_probs=36.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.....+++++||.+||.||++.++|..+++.++++.
T Consensus        77 lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~  118 (232)
T PRK10955         77 LTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS  118 (232)
T ss_pred             EECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence            356677778889999999999999999999999999888654

>CHL00148 orf27 Ycf27; Reviewed

Probab=94.80  E-value=0.044  Score=50.85  Aligned_cols=42  Identities=33%  Similarity=0.575  Sum_probs=36.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.....+++++||.+||.||++.++|..+++.++++.
T Consensus        83 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~  124 (240)
T CHL00148         83 LTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT  124 (240)
T ss_pred             EECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            356677788889999999999999999999999999887654

>PRK11517 transcriptional regulatory protein YedW; Provisional

Probab=94.71  E-value=0.044  Score=50.30  Aligned_cols=40  Identities=28%  Similarity=0.497  Sum_probs=35.7

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+.+...+++++||++||.||++.++|..+++.++++
T Consensus        78 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~  117 (223)
T PRK11517         78 TARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ  117 (223)
T ss_pred             ECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            5667788899999999999999999999999999988764

>PRK13856 two-component response regulator VirG; Provisional

Probab=94.60  E-value=0.05  Score=51.55  Aligned_cols=37  Identities=22%  Similarity=0.394  Sum_probs=33.0

Q ss_pred             chHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            6 ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         6 d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +.....+++++||++||.||++.++|..+++.++++.
T Consensus        84 ~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~  120 (241)
T PRK13856         84 EEADKVVALELGATDFIAKPFGTREFLARIRVALRVR  120 (241)
T ss_pred             cHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence            5566789999999999999999999999999988764

>PRK09581 pleD response regulator PleD; Reviewed

Probab=94.56  E-value=0.031  Score=57.09  Aligned_cols=42  Identities=29%  Similarity=0.534  Sum_probs=37.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+.+.+|+..||+|||.||++.++|...+....+++
T Consensus       234 ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~~  275 (457)
T PRK09581        234 LVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRRK  275 (457)
T ss_pred             EeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHHH
Confidence            467888999999999999999999999999999988766543

>TIGR01387 cztR_silR_copR heavy metal response regulator

Probab=94.51  E-value=0.051  Score=49.41  Aligned_cols=41  Identities=29%  Similarity=0.512  Sum_probs=35.9

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+.....+++++||++||.||++.++|..+++.++++.
T Consensus        77 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  117 (218)
T TIGR01387        77 TARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS  117 (218)
T ss_pred             EcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence            55677788889999999999999999999999999887653

Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.

>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB

Probab=94.49  E-value=0.051  Score=49.56  Aligned_cols=41  Identities=32%  Similarity=0.549  Sum_probs=36.1

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+.....+++++||++||.||++.++|...++.++++.
T Consensus        83 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  123 (226)
T TIGR02154        83 TARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI  123 (226)
T ss_pred             ecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence            56677788899999999999999999999999999887653

PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.

>PRK11083 DNA-binding response regulator CreB; Provisional

Probab=94.45  E-value=0.046  Score=50.05  Aligned_cols=41  Identities=22%  Similarity=0.426  Sum_probs=35.5

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+......++++||++||.||++.++|...++.++++.
T Consensus        82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~  122 (228)
T PRK11083         82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV  122 (228)
T ss_pred             EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence            55667777889999999999999999999999998887654

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=94.23  E-value=0.056  Score=56.79  Aligned_cols=41  Identities=24%  Similarity=0.417  Sum_probs=36.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ||+..+.+...++++.||++||.||++.++|..+++++++.
T Consensus        79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~  119 (445)
T TIGR02915        79 ITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHL  119 (445)
T ss_pred             EecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhh
Confidence            46778889999999999999999999999999999887654

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]

Probab=94.22  E-value=0.034  Score=58.63  Aligned_cols=42  Identities=29%  Similarity=0.379  Sum_probs=37.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...+|+..||+|||.||+++.+|..++...++.+
T Consensus        95 lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k  136 (360)
T COG3437          95 LTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK  136 (360)
T ss_pred             EeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            488999999999999999999999999999999997666544

>PLN03029 type-a response regulator protein; Provisional

Probab=94.20  E-value=0.066  Score=51.85  Aligned_cols=43  Identities=28%  Similarity=0.611  Sum_probs=36.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||+........+++++||.+||.||+...+|..++.++++.+.
T Consensus       108 ls~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~~  150 (222)
T PLN03029        108 MSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTKS  150 (222)
T ss_pred             EeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHHH
Confidence            3566777888899999999999999999999888888776543

>PRK10360 DNA-binding transcriptional activator UhpA; Provisional

Probab=94.19  E-value=0.067  Score=48.21  Aligned_cols=40  Identities=25%  Similarity=0.215  Sum_probs=35.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |...+.+....+++.||++||.||++.++|...++.+++.
T Consensus        79 s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~  118 (196)
T PRK10360         79 SVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATG  118 (196)
T ss_pred             ECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcC
Confidence            4566778888999999999999999999999999988754

>PRK10693 response regulator of RpoS; Provisional

Probab=94.08  E-value=0.069  Score=54.08  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=35.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.+.+.++++.||+|||.||+ +.++|..+++++++.
T Consensus        51 lt~~~~~~~~~~al~~Ga~dyl~KP~~~~~~L~~~i~~~l~~   92 (303)
T PRK10693         51 ISATENMADIAKALRLGVQDVLLKPVKDLNRLREMVFACLYP   92 (303)
T ss_pred             EECCCCHHHHHHHHHCCCcEEEECCCCcHHHHHHHHHHHhhh
Confidence            36777888999999999999999999 599999999887754

>PRK09958 DNA-binding transcriptional activator EvgA; Provisional

Probab=94.00  E-value=0.076  Score=48.16  Aligned_cols=40  Identities=13%  Similarity=0.057  Sum_probs=35.4

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+......++..||++||.||++.++|...++.+++.
T Consensus        80 s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~  119 (204)
T PRK09958         80 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG  119 (204)
T ss_pred             eCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcC
Confidence            5567778889999999999999999999999999988754

>PRK10430 DNA-binding transcriptional activator DcuR; Provisional

Probab=93.82  E-value=0.1  Score=50.17  Aligned_cols=42  Identities=21%  Similarity=0.423  Sum_probs=36.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+...+.++++.||.+||.||++.++|...+.+++.++
T Consensus        83 ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~  124 (239)
T PRK10430         83 ISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK  124 (239)
T ss_pred             EECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence            467788888999999999999999999999999998876543

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Probab=93.66  E-value=0.081  Score=57.28  Aligned_cols=44  Identities=30%  Similarity=0.470  Sum_probs=39.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +++.++...+.+|++.||.|||.||+...+|..++...+++.+.
T Consensus       212 ~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~  255 (435)
T COG3706         212 LSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRY  255 (435)
T ss_pred             EecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhH
Confidence            46778899999999999999999999999999999999887663

>PRK10610 chemotaxis regulatory protein CheY; Provisional

Probab=93.63  E-value=0.14  Score=40.85  Aligned_cols=38  Identities=24%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             CCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            4 DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         4 ~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ..+......+++.|+.+|+.||++.++|...+++++++
T Consensus        89 ~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~  126 (129)
T PRK10610         89 EAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK  126 (129)
T ss_pred             CCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence            44566778899999999999999999999999988765

>PRK15479 transcriptional regulatory protein TctD; Provisional

Probab=93.36  E-value=0.13  Score=46.81  Aligned_cols=41  Identities=29%  Similarity=0.525  Sum_probs=35.7

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |...+.....++++.||++||.||+..++|...++.++++.
T Consensus        79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~  119 (221)
T PRK15479         79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS  119 (221)
T ss_pred             ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence            45667778889999999999999999999999999887654

>PRK09935 transcriptional regulator FimZ; Provisional

Probab=93.35  E-value=0.11  Score=46.83  Aligned_cols=40  Identities=18%  Similarity=0.165  Sum_probs=35.1

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+.....+++..||++|+.||++.++|...++.++++
T Consensus        84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~  123 (210)
T PRK09935         84 SSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSG  123 (210)
T ss_pred             ECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcC
Confidence            5566777888999999999999999999999999887764

>PRK10840 transcriptional regulator RcsB; Provisional

Probab=93.15  E-value=0.13  Score=48.36  Aligned_cols=40  Identities=8%  Similarity=0.076  Sum_probs=34.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR   40 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR   40 (489)
                      +|+..+...+.+++++||.+||.||+++++|...++.+..
T Consensus        86 ls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~  125 (216)
T PRK10840         86 LTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK  125 (216)
T ss_pred             EEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence            3566778888999999999999999999999999988754

>TIGR02875 spore_0_A sporulation transcription factor Spo0A

Probab=93.11  E-value=0.13  Score=49.79  Aligned_cols=41  Identities=24%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||.+||.||++.++|..+++++++.
T Consensus        84 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~  124 (262)
T TIGR02875        84 LSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG  124 (262)
T ss_pred             EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            36677888889999999999999999999999999887654

Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.

>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]

Probab=92.14  E-value=0.19  Score=49.18  Aligned_cols=42  Identities=14%  Similarity=0.328  Sum_probs=37.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++++...+.++++.||..||+||++...|+.++.-+..+.
T Consensus        83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf  124 (194)
T COG3707          83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRF  124 (194)
T ss_pred             EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHH
Confidence            478999999999999999999999999999999887766554

>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional

Probab=92.04  E-value=0.24  Score=46.01  Aligned_cols=41  Identities=24%  Similarity=0.362  Sum_probs=34.7

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ++..+......++.+||.+||.||++.++|..+++.++++.
T Consensus        88 ~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~  128 (240)
T PRK10710         88 TAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC  128 (240)
T ss_pred             EcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence            44556677788999999999999999999999998887653

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional

Probab=91.51  E-value=0.24  Score=48.06  Aligned_cols=41  Identities=12%  Similarity=0.081  Sum_probs=33.5

Q ss_pred             CCCCCchHHHHHHH-hcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGV-QHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kAL-elGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++.+...+.+++ ++||++||.||++.++|...++.+++.
T Consensus        74 lt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G  115 (207)
T PRK11475         74 IADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG  115 (207)
T ss_pred             EeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence            46666666666666 799999999999999999999988754

>PRK09483 response regulator; Provisional

Probab=91.45  E-value=0.27  Score=45.05  Aligned_cols=40  Identities=28%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |...+.....+++..||++||.||++.++|...++.+++.
T Consensus        82 s~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g  121 (217)
T PRK09483         82 TVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSG  121 (217)
T ss_pred             eCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence            4566777888999999999999999999999999887654

>PRK09581 pleD response regulator PleD; Reviewed

Probab=91.33  E-value=0.32  Score=49.69  Aligned_cols=40  Identities=25%  Similarity=0.332  Sum_probs=35.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+.....+++..||.+||.||++.++|..++..+++.
T Consensus        83 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~  122 (457)
T PRK09581         83 TALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRL  122 (457)
T ss_pred             ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
Confidence            4566778889999999999999999999999999887754

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=90.55  E-value=0.26  Score=51.79  Aligned_cols=41  Identities=29%  Similarity=0.519  Sum_probs=36.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.+....+++.||.+||.||++.++|...++++++.
T Consensus        82 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~  122 (457)
T PRK11361         82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQL  122 (457)
T ss_pred             EeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccc
Confidence            46778888999999999999999999999999988876643

>smart00426 TEA TEA domain

Probab=90.43  E-value=0.3  Score=40.46  Aligned_cols=48  Identities=29%  Similarity=0.275  Sum_probs=30.8

Q ss_pred             EecchhHHHHHHHHHHHhCCCCCChHHHHh-------------hcC---CCcchHHHHHHhhhh
Q 011273          108 VVWSIDLHQKFVKAVNQIGFDKVGPKKILD-------------LMN---VPWLTRENVASHLQK  155 (489)
Q Consensus       108 ~~WT~eLH~~Fv~AV~~LG~~kAtPKrILE-------------lM~---v~gLT~~~V~SHLQK  155 (489)
                      -+|.+++...|++|...+=...+.+-+++.             ++-   =.--|+.||.||+|-
T Consensus         4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tGk~Rt~KQVsShIQv   67 (68)
T smart00426        4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQV   67 (68)
T ss_pred             CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhCCccchhhhcchhee
Confidence            379999999999999987522222112221             111   134577999999994

>PRK10403 transcriptional regulator NarP; Provisional

Probab=90.37  E-value=0.39  Score=43.15  Aligned_cols=40  Identities=25%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +...+......++..||++|+.||++.++|...++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~  126 (215)
T PRK10403         87 TVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKG  126 (215)
T ss_pred             eCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCC
Confidence            4456677788899999999999999999999999887643

>PRK15369 two component system sensor kinase SsrB; Provisional

Probab=90.29  E-value=0.43  Score=42.39  Aligned_cols=40  Identities=23%  Similarity=0.179  Sum_probs=34.5

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+......++..||.+|+.||++..+|...++.+++.
T Consensus        84 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~  123 (211)
T PRK15369         84 TARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVG  123 (211)
T ss_pred             eCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence            5566777888999999999999999999999999887644

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=90.17  E-value=0.41  Score=50.77  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=37.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||+..+.+....+++.||.+||.||++.++|...+++++...
T Consensus        81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~  122 (469)
T PRK10923         81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY  122 (469)
T ss_pred             EECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence            467788888999999999999999999999999999887643

>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]

Probab=90.04  E-value=0.53  Score=39.71  Aligned_cols=41  Identities=24%  Similarity=0.438  Sum_probs=31.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKE-LRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eE-L~~i~q~vLRr   41 (489)
                      +|++.......++++.|+.+||.||+...+ |...+++++..
T Consensus        85 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~  126 (130)
T COG0784          85 LTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR  126 (130)
T ss_pred             EEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence            356666666778899999999999977777 77777765543

>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]

Probab=90.03  E-value=0.46  Score=46.04  Aligned_cols=42  Identities=24%  Similarity=0.347  Sum_probs=38.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+...+.+++++||..|+.|..++++|...++.+....
T Consensus        80 lt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~  121 (211)
T COG2197          80 LTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGG  121 (211)
T ss_pred             EeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence            478899999999999999999999999999999999887544

>PRK13435 response regulator; Provisional

Probab=89.62  E-value=0.51  Score=41.13  Aligned_cols=33  Identities=12%  Similarity=0.160  Sum_probs=28.7

Q ss_pred             HHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273           11 MKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus        11 ~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ..++..||.+||.||++.++|...+++++.++.
T Consensus        91 ~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~  123 (145)
T PRK13435         91 VPHDFAGALGVIAKPYSPRGVARALSYLSARRV  123 (145)
T ss_pred             HHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence            567889999999999999999999998875543

>PRK15115 response regulator GlrR; Provisional

Probab=89.51  E-value=0.34  Score=50.95  Aligned_cols=41  Identities=17%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||.+||.||+..++|...++.+++.
T Consensus        83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~  123 (444)
T PRK15115         83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ  123 (444)
T ss_pred             EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence            46677888899999999999999999999999999988764

>PRK11697 putative two-component response-regulatory protein YehT; Provisional

Probab=89.27  E-value=0.68  Score=43.67  Aligned_cols=34  Identities=29%  Similarity=0.435  Sum_probs=30.2

Q ss_pred             HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            8 SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         8 e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +....+++.||.+||.||+..++|...+.++.+.
T Consensus        85 ~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~  118 (238)
T PRK11697         85 EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE  118 (238)
T ss_pred             HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence            4677899999999999999999999999988654

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=89.19  E-value=0.52  Score=49.76  Aligned_cols=41  Identities=22%  Similarity=0.433  Sum_probs=36.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++.+.....++++.||.+||.||+..++|...+++++..
T Consensus        76 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~  116 (463)
T TIGR01818        76 MTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH  116 (463)
T ss_pred             EeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence            36677788899999999999999999999999999887754

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK11107 hybrid sensory histidine kinase BarA; Provisional

Probab=89.15  E-value=0.41  Score=54.27  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=36.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.+...+|++.||++||.||++.++|...+.++++.
T Consensus       747 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  787 (919)
T PRK11107        747 VTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG  787 (919)
T ss_pred             EeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence            47788889999999999999999999999999998887644

>PRK14084 two-component response regulator; Provisional

Probab=88.95  E-value=0.74  Score=43.86  Aligned_cols=35  Identities=29%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            8 SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         8 e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +...++++.||.+||.||+..++|...++++.+..
T Consensus        85 ~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~  119 (246)
T PRK14084         85 QFAVKAFELNATDYILKPFEQKRIEQAVNKVRATK  119 (246)
T ss_pred             HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence            45678999999999999999999999999887543

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=88.73  E-value=0.34  Score=50.63  Aligned_cols=42  Identities=21%  Similarity=0.490  Sum_probs=37.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+.+..+++.||.+||.||++.++|...+++++++.
T Consensus        83 lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~  124 (441)
T PRK10365         83 MTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT  124 (441)
T ss_pred             EECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            466778889999999999999999999999999999887653

>PRK10651 transcriptional regulator NarL; Provisional

Probab=88.53  E-value=0.71  Score=41.63  Aligned_cols=40  Identities=28%  Similarity=0.384  Sum_probs=34.4

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ++..+......+++.||.+||.||++.++|...++.+++.
T Consensus        87 ~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~  126 (216)
T PRK10651         87 SVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAG  126 (216)
T ss_pred             eCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence            4456677788999999999999999999999999988754

>PRK15347 two component system sensor kinase SsrA; Provisional

Probab=88.13  E-value=0.66  Score=52.72  Aligned_cols=41  Identities=15%  Similarity=0.328  Sum_probs=36.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||++||.||++.++|..++.++++.
T Consensus       772 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  812 (921)
T PRK15347        772 LTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAEY  812 (921)
T ss_pred             EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhh
Confidence            46778888899999999999999999999999999887653

>PRK11466 hybrid sensory histidine kinase TorS; Provisional

Probab=86.62  E-value=0.76  Score=52.43  Aligned_cols=41  Identities=12%  Similarity=0.103  Sum_probs=36.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++.......++++.|+++||.||++.++|...+.++++.
T Consensus       760 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~  800 (914)
T PRK11466        760 FSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQL  800 (914)
T ss_pred             EeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhh
Confidence            46677778889999999999999999999999999998754

>PRK09390 fixJ response regulator FixJ; Provisional

Probab=85.39  E-value=0.73  Score=40.72  Aligned_cols=40  Identities=18%  Similarity=0.376  Sum_probs=34.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+......+++.|+.+|+.||+..++|...++.+++.
T Consensus        82 ~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~  121 (202)
T PRK09390         82 TGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ  121 (202)
T ss_pred             ECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence            4556777888999999999999999999999988877754

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS

Probab=84.80  E-value=1.1  Score=51.20  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=36.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++...+...++++.|+++||.||++.++|..++.+++..
T Consensus       783 lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  823 (968)
T TIGR02956       783 FSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG  823 (968)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence            46777888899999999999999999999999999887753

This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).

>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers

Probab=84.76  E-value=0.76  Score=34.48  Aligned_cols=34  Identities=29%  Similarity=0.490  Sum_probs=28.4

Q ss_pred             CchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 011273            5 GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV   38 (489)
Q Consensus         5 ~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~v   38 (489)
                      ........++..|+.+|+.||+..++|...++.+
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~  112 (113)
T cd00156          79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL  112 (113)
T ss_pred             ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence            3456677889999999999999999998888654

>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional

Probab=83.72  E-value=1.3  Score=52.28  Aligned_cols=40  Identities=18%  Similarity=0.389  Sum_probs=35.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR   40 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR   40 (489)
                      +|+..+.....++++.||++||.||++.++|...++++.+
T Consensus      1036 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959       1036 LTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred             EECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence            4677888889999999999999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	489
1irz_A	64	Solution Structure Of Arr10-B Belonging To The Garp		3e-15

>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family Of Plant Myb-Related Dna Binding Motifs Of The Arabidopsis Response Regulators Length = 64

Iteration: 1
 Score = 80.1 bits (196), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 50/63 (79%)
Query: 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL 160
           ++ KK RV+W+ +LH KF+ AV+ +G ++  PKKILDLMNV  LTRENVASHLQK+R+ L
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 161 TRL 163
            ++
Sbjct: 61  KKV 63

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	489
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	3e-27
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	3e-04
3hdg_A	137	Uncharacterized protein; two-component sensor acti	4e-04
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	5e-04
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	5e-04

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11 Length = 64

 Score =  103 bits (257), Expect = 3e-27
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL 160
           ++ KK RV+W+ +LH KF+ AV+ +G ++  PKKILDLMNV  LTRENVASHLQK+R+ L
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Query: 161 TRL 163
            ++
Sbjct: 61  KKV 63

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 68/523 (13%), Positives = 144/523 (27%), Gaps = 179/523 (34%)

Query: 3   VDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHMTR 62
           +D ET       Q+   D L               VF     +  D ++++         
Sbjct: 7   MDFETGEH----QYQYKDIL--------------SVFEDAFVDNFDCKDVQDMPK----- 43

Query: 63  SGSDQSVDGPLLTGEDLTSVRKRKDAENRHDDRDCGDASSTKKARVVWSI-----DLHQK 117
                     +L+ E++  +   KDA +                R+ W++     ++ QK
Sbjct: 44  ---------SILSKEEIDHIIMSKDAVSGTL-------------RLFWTLLSKQEEMVQK 81

Query: 118 FVKAVNQIGFD---------KVGPKKILDLMNVPWLTRENVASHLQKYRLY-LTRLQK-D 166
           FV+ V +I +          +  P  +  +       R+ + +  Q +  Y ++RLQ   
Sbjct: 82  FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE---QRDRLYNDNQVFAKYNVSRLQPYL 138

Query: 167 ELKTSVGGIKQKDSPSKDSAASFGIQNSITVHHHNDVSNGGYRFSGSNSVVQNVDAKSLE 226
           +L+ ++     +  P+K+          + +        G                    
Sbjct: 139 KLRQAL----LELRPAKN----------VLID-------G-------------------- 157

Query: 227 GDVKGIDTIPVTGHKRVLTVDIPNSHKARCSQIGFNGSFVPGHSDVNFTSFDSAIPTQPW 286
             V G       G K  + +D+  S+K +C                +F  F        W
Sbjct: 158 --VLGS------G-KTWVALDVCLSYKVQCKM--------------DFKIF--------W 186

Query: 287 SEVSETQFQHEHKPLRLENDFTQLPLPGPRHHIQVDCIQSGPSASSKPSVVDKDNLKPFD 346
             +       E     L+    Q+    P    + D   +            +  L+   
Sbjct: 187 LNLKNCN-SPETVLEMLQKLLYQI---DPNWTSRSDHSSNIKL----RIHSIQAELRRL- 237

Query: 347 CTYKSNYPNAIPI------GSAVDTFPVQ-----TT--SPIVNHQPFEPIARTTSSMKSQ 393
                 Y N + +        A + F +      TT    + +          +    S 
Sbjct: 238 -LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296

Query: 394 GLNLSCIPDLEAAQRNINWGVGSSLTSLDEDLQLCWLQGDCFAMNL---GLQD-----IN 445
            L        E     + + +      L    ++     +   +++    ++D      N
Sbjct: 297 TLTPD-----EVKSLLLKY-LDCRPQDLPR--EVL--TTNPRRLSIIAESIRDGLATWDN 346

Query: 446 FSEYNDPALNSEVPFHLYDTMRFDYEHYYDPTECPIIDQGLFI 488
           +   N   L + +   L      +Y   +D     +      I
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFD--RLSVFPPSAHI 387

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg} Length = 141

 Score = 39.8 bits (94), Expect = 3e-04
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 12  KGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIE 53
             ++  A  Y+ KPI   E+ +  +    + + + +  ++ E
Sbjct: 94  AAIKFRAIRYVEKPIDPSEIMDALKQS-IQTVLQHQAQQDSE 134

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} Length = 137

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%)

Query: 5   GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHE 45
            E    +K ++ G   +L KPI    L    +     K+ +
Sbjct: 89  SEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLAK 129

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 37.8 bits (88), Expect = 5e-04
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 100 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLY 159
           +S +    V W+I+  + F + + + G       KI  L  +   T   V S+ ++Y   
Sbjct: 2   SSGSSGYSVKWTIEEKELFEQGLAKFGRRW---TKISKL--IGSRTVLQVKSYARQYFKN 56

Query: 160 LTRLQKDE 167
             +   D+
Sbjct: 57  KVKCGLDK 64

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 100 ASSTKKARVVWSIDLHQKFVKAVNQIGFDKVGP---KKILDLMNVPWLTRENVASHLQKY 156
            SS      +W+++  +K  + + +   ++V     +KI D   +   T + VAS +QKY
Sbjct: 1   GSSGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD--ELGNRTAKQVASQVQKY 58

Query: 157 RLYLTRLQKDELKTSVG 173
            + LT+        S G
Sbjct: 59  FIKLTKAGIPVSGPSSG 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	489
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	99.93
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	97.22
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	97.19
2pl1_A	121	Transcriptional regulatory protein PHOP; CHEY-like	97.18
3t6k_A	136	Response regulator receiver; flavodoxin-like, stru	97.17
3h1g_A	129	Chemotaxis protein CHEY homolog; sulfate-bound CHE	97.15
2r25_B	133	Osmosensing histidine protein kinase SLN1; alpha5-	97.12
1zgz_A	122	Torcad operon transcriptional regulatory protein;	97.11
1xhf_A	123	DYE resistance, aerobic respiration control protei	97.06
3kht_A	144	Response regulator; PSI-II, 11023K, structural gen	97.04
1jbe_A	128	Chemotaxis protein CHEY; signaling protein; 1.08A	97.03
3crn_A	132	Response regulator receiver domain protein, CHEY-;	97.03
1zh2_A	121	KDP operon transcriptional regulatory protein KDPE	97.02
2a9o_A	120	Response regulator; essential protein, YYCF/YYCG h	97.02
1p6q_A	129	CHEY2; chemotaxis, signal transduction, response r	97.01
2qzj_A	136	Two-component response regulator; 11017X, PSI-II,	97.01
1dbw_A	126	Transcriptional regulatory protein FIXJ; doubly wo	97.0
3cfy_A	137	Putative LUXO repressor protein; structural genomi	96.98
3hdg_A	137	Uncharacterized protein; two-component sensor acti	96.98
3kto_A	136	Response regulator receiver protein; PSI-II,struct	96.95
1dcf_A	136	ETR1 protein; beta-alpha five sandwich, transferas	96.93
1dz3_A	130	Stage 0 sporulation protein A; response regulator,	96.93
1k68_A	140	Phytochrome response regulator RCPA; phosphorylate	96.92
3jte_A	143	Response regulator receiver protein; structural ge	96.91
3lua_A	140	Response regulator receiver protein; two-component	96.88
1i3c_A	149	Response regulator RCP1; phytochrome, signaling pr	96.85
3b2n_A	133	Uncharacterized protein Q99UF4; structural genomic	96.82
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	96.81
1tmy_A	120	CHEY protein, TMY; chemotaxis, phosphoryl transfer	96.8
3cnb_A	143	DNA-binding response regulator, MERR family; signa	96.8
2zay_A	147	Response regulator receiver protein; structural ge	96.8
3hv2_A	153	Response regulator/HD domain protein; PSI-2, NYSGX	96.76
1srr_A	124	SPO0F, sporulation response regulatory protein; as	96.75
3gt7_A	154	Sensor protein; structural genomics, signal receiv	96.74
3cg0_A	140	Response regulator receiver modulated diguanylate	96.72
4e7p_A	150	Response regulator; DNA binding, cytosol, transcri	96.72
3cu5_A	141	Two component transcriptional regulator, ARAC FAM;	96.72
3r0j_A	250	Possible two component system response transcript	96.7
3heb_A	152	Response regulator receiver domain protein (CHEY);	96.65
3eul_A	152	Possible nitrate/nitrite response transcriptional	96.64
3m6m_D	143	Sensory/regulatory protein RPFC; RPFF, REC, enoyl-	96.63
2jba_A	127	Phosphate regulon transcriptional regulatory PROT;	96.62
3hdv_A	136	Response regulator; PSI-II, structural genomics, P	96.61
3eod_A	130	Protein HNR; response regulator, phosphoprotein, t	96.61
3rqi_A	184	Response regulator protein; structural genomics, s	96.6
1mb3_A	124	Cell division response regulator DIVK; signal tran	96.58
2qxy_A	142	Response regulator; regulation of transcription, N	96.55
1qo0_D	196	AMIR; binding protein, gene regulator, receptor; 2	96.55
3nhm_A	133	Response regulator; protein structure initiative I	96.48
3f6c_A	134	Positive transcription regulator EVGA; structural	96.48
3h5i_A	140	Response regulator/sensory box protein/ggdef domai	96.47
1qkk_A	155	DCTD, C4-dicarboxylate transport transcriptional r	96.47
1mvo_A	136	PHOP response regulator; phosphate regulon, transc	96.46
3grc_A	140	Sensor protein, kinase; protein structure initiati	96.46
2qr3_A	140	Two-component system response regulator; structura	96.45
3n53_A	140	Response regulator receiver modulated diguanylate;	96.44
1dc7_A	124	NTRC, nitrogen regulation protein; receiver domain	96.43
3kcn_A	151	Adenylate cyclase homolog; SGX, PSI 2, structural	96.36
1a04_A	215	Nitrate/nitrite response regulator protein NARL; s	96.35
3cz5_A	153	Two-component response regulator, LUXR family; str	96.27
3q9s_A	249	DNA-binding response regulator; DNA binding protei	96.25
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	96.22
1s8n_A	205	Putative antiterminator; RV1626, structural genomi	96.2
2rjn_A	154	Response regulator receiver:metal-dependent phosph	96.13
1p2f_A	220	Response regulator; DRRB, OMPR/PHOB, transcription	96.13
2qsj_A	154	DNA-binding response regulator, LUXR family; struc	96.12
2jk1_A	139	HUPR, hydrogenase transcriptional regulatory prote	96.09
2qvg_A	143	Two component response regulator; NYSGXRC, PSI-2,	96.07
3lte_A	132	Response regulator; structural genomics, PSI, prot	96.02
3cg4_A	142	Response regulator receiver domain protein (CHEY-;	96.02
1yio_A	208	Response regulatory protein; transcription regulat	96.02
1kgs_A	225	DRRD, DNA binding response regulator D; DNA-bindin	96.01
2qv0_A	143	Protein MRKE; structural genomics, transcription,	95.97
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	95.9
2hqr_A	223	Putative transcriptional regulator; phosporylation	95.87
1w25_A	459	Stalked-cell differentiation controlling protein;	95.86
3klo_A	225	Transcriptional regulator VPST; REC domain, HTH do	95.81
3i42_A	127	Response regulator receiver domain protein (CHEY-	95.81
3eqz_A	135	Response regulator; structural genomics, unknown f	95.64
2gkg_A	127	Response regulator homolog; social motility, recei	95.62
3bre_A	358	Probable two-component response regulator; protein	95.46
2oqr_A	230	Sensory transduction protein REGX3; response regul	95.36
3eq2_A	394	Probable two-component response regulator; adaptor	95.3
1ys7_A	233	Transcriptional regulatory protein PRRA; response	95.29
3c3m_A	138	Response regulator receiver protein; structural ge	95.05
3c3w_A	225	Two component transcriptional regulatory protein;	95.05
2gwr_A	238	DNA-binding response regulator MTRA; two-component	94.99
3kyj_B	145	CHEY6 protein, putative histidine protein kinase;	93.99
3sy8_A	400	ROCR; TIM barrel phosphodiesterase-A, transcriptio	93.71
2rdm_A	132	Response regulator receiver protein; structural ge	93.08
3a10_A	116	Response regulator; phosphoacceptor, signaling pro	92.93
2lpm_A	123	Two-component response regulator; transcription re	92.07
3c97_A	140	Signal transduction histidine kinase; structural g	91.46
2j48_A	119	Two-component sensor kinase; pseudo-receiver, circ	90.9
3luf_A	259	Two-component system response regulator/ggdef doma	90.38
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	89.89
3t8y_A	164	CHEB, chemotaxis response regulator protein-glutam	89.21
1a2o_A	349	CHEB methylesterase; bacterial chemotaxis, adaptat	88.89
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	87.14
2pln_A	137	HP1043, response regulator; signaling protein; 1.8	86.72
2hzd_A	82	Transcriptional enhancer factor TEF-1; DNA-binding	86.58
1w25_A	459	Stalked-cell differentiation controlling protein;	84.82
3q7r_A	121	Transcriptional regulatory protein; CHXR, receiver	82.85
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	82.84

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=99.93  E-value=4.1e-27  Score=187.65  Aligned_cols=63  Identities=57%  Similarity=0.936  Sum_probs=60.6

Q ss_pred             CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhh
Q 011273          101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL  163 (489)
Q Consensus       101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~  163 (489)
                      ++.+|+|++||+|||++||+||++||.++||||+||++|+|+|||++||+|||||||++++|.
T Consensus         1 ~~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~   63 (64)
T 1irz_A            1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence            367899999999999999999999999999999999999999999999999999999999874

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=97.22  E-value=0.00019  Score=58.96  Aligned_cols=41  Identities=24%  Similarity=0.401  Sum_probs=36.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||++||.||++.++|..++++++++
T Consensus        79 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~  119 (120)
T 3f6p_A           79 LTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR  119 (120)
T ss_dssp             EEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred             EECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence            35677788889999999999999999999999999988764

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=97.19  E-value=0.00029  Score=58.19  Aligned_cols=40  Identities=15%  Similarity=0.254  Sum_probs=36.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR   40 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR   40 (489)
                      +|+..+.+...+++++||++||.||++.++|..+++++++
T Consensus        82 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~  121 (122)
T 3gl9_A           82 LTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN  121 (122)
T ss_dssp             EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred             EecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence            4677888899999999999999999999999999998764

>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A

Probab=97.18  E-value=0.00045  Score=55.83  Aligned_cols=42  Identities=21%  Similarity=0.377  Sum_probs=37.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.....++++.||++||.||++.++|..++++++++.
T Consensus        78 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~  119 (121)
T 2pl1_A           78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN  119 (121)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence            356777888899999999999999999999999999988764

>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0

Probab=97.17  E-value=0.00032  Score=58.96  Aligned_cols=43  Identities=28%  Similarity=0.512  Sum_probs=37.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...+++++||++||.||++.++|..++++++++..
T Consensus        84 ~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~  126 (136)
T 3t6k_A           84 LTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTT  126 (136)
T ss_dssp             EECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC--
T ss_pred             EecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccC
Confidence            4677888889999999999999999999999999999987653

>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A

Probab=97.15  E-value=0.00026  Score=58.66  Aligned_cols=41  Identities=20%  Similarity=0.493  Sum_probs=36.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+...+.+++++||++||.||++.++|..+++.++++
T Consensus        87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~  127 (129)
T 3h1g_A           87 ITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT  127 (129)
T ss_dssp             EESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred             EeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence            46778888899999999999999999999999999988753

>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B

Probab=97.12  E-value=0.00029  Score=59.04  Aligned_cols=42  Identities=19%  Similarity=0.355  Sum_probs=37.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+.+.+++++||++||.||++.++|...+++++.+.
T Consensus        87 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~  128 (133)
T 2r25_B           87 LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAAY  128 (133)
T ss_dssp             EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTTC
T ss_pred             EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHhh
Confidence            467788889999999999999999999999999998876543

>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1

Probab=97.11  E-value=0.00051  Score=55.73  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=37.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...+++++||++||.||++.++|..++++++++.
T Consensus        79 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~  120 (122)
T 1zgz_A           79 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI  120 (122)
T ss_dssp             EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence            356777888899999999999999999999999999988764

>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A

Probab=97.06  E-value=0.00058  Score=55.47  Aligned_cols=41  Identities=22%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+.....+++++||++||.||++.++|..++++++++.
T Consensus        81 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~  121 (123)
T 1xhf_A           81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT  121 (123)
T ss_dssp             ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             ECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence            56677788899999999999999999999999999988664

>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0

Probab=97.04  E-value=0.00072  Score=56.74  Aligned_cols=44  Identities=11%  Similarity=0.138  Sum_probs=39.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+++++||++||.||+ +.++|..+++++++++..
T Consensus        87 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~~  131 (144)
T 3kht_A           87 LTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWLT  131 (144)
T ss_dssp             EETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHHh
Confidence            35677888999999999999999999 999999999999988765

>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...

Probab=97.03  E-value=0.00076  Score=55.16  Aligned_cols=42  Identities=21%  Similarity=0.495  Sum_probs=37.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus        85 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~  126 (128)
T 1jbe_A           85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL  126 (128)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence            356777888999999999999999999999999999988653

>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}

Probab=97.03  E-value=0.00073  Score=56.19  Aligned_cols=43  Identities=14%  Similarity=0.258  Sum_probs=37.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...+++++||++||.||++.++|...+++++++..
T Consensus        81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  123 (132)
T 3crn_A           81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQE  123 (132)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhccc
Confidence            3667788889999999999999999999999999999886643

>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A

Probab=97.02  E-value=0.00067  Score=54.64  Aligned_cols=42  Identities=31%  Similarity=0.486  Sum_probs=37.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.....++++.||.+||.||++.++|...+++++++.
T Consensus        78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~  119 (121)
T 1zh2_A           78 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH  119 (121)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence            356677888899999999999999999999999999988754

>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*

Probab=97.02  E-value=0.0006  Score=54.82  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=36.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||.+||.||++.++|..++++++++
T Consensus        78 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~  118 (120)
T 2a9o_A           78 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR  118 (120)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred             EecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence            35667778888999999999999999999999999988765

>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A

Probab=97.01  E-value=0.0007  Score=55.46  Aligned_cols=41  Identities=24%  Similarity=0.468  Sum_probs=37.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....++++.||.+||.||++.++|..++++++++
T Consensus        87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~  127 (129)
T 1p6q_A           87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA  127 (129)
T ss_dssp             CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred             EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            57778888899999999999999999999999999988764

>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}

Probab=97.01  E-value=0.00075  Score=56.68  Aligned_cols=43  Identities=23%  Similarity=0.458  Sum_probs=37.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus        81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~  123 (136)
T 2qzj_A           81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRMN  123 (136)
T ss_dssp             EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHhh
Confidence            3567778889999999999999999999999999999887654

>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*

Probab=97.00  E-value=0.00058  Score=56.04  Aligned_cols=41  Identities=15%  Similarity=0.329  Sum_probs=36.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus        81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~  121 (126)
T 1dbw_A           81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH  121 (126)
T ss_dssp             EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred             EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence            36677888899999999999999999999999999988754

>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.98  E-value=0.00086  Score=56.38  Aligned_cols=43  Identities=23%  Similarity=0.364  Sum_probs=37.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...++++.||.+||.||++.++|..++++++++..
T Consensus        82 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  124 (137)
T 3cfy_A           82 ATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAK  124 (137)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            3566778889999999999999999999999999999887644

>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0

Probab=96.98  E-value=0.00086  Score=55.64  Aligned_cols=44  Identities=23%  Similarity=0.275  Sum_probs=39.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+...+++++||++||.||++.++|...++++++....
T Consensus        85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  128 (137)
T 3hdg_A           85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA  128 (137)
T ss_dssp             CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence            57778888999999999999999999999999999999887654

>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0

Probab=96.95  E-value=0.00083  Score=56.13  Aligned_cols=44  Identities=16%  Similarity=0.274  Sum_probs=38.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+++++||++||.||++.++|..+++++++....
T Consensus        86 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~  129 (136)
T 3kto_A           86 MASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE  129 (136)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred             EEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence            46778888899999999999999999999999999999877643

>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2

Probab=96.93  E-value=0.00062  Score=56.59  Aligned_cols=41  Identities=22%  Similarity=0.409  Sum_probs=36.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||++||.||++.++|...++++++.
T Consensus        89 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~  129 (136)
T 1dcf_A           89 LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP  129 (136)
T ss_dssp             EESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred             EeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence            35677788889999999999999999999999999988754

>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*

Probab=96.93  E-value=0.00041  Score=57.29  Aligned_cols=43  Identities=28%  Similarity=0.479  Sum_probs=37.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...+++++||++||.||++.++|...+++++++..
T Consensus        83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~  125 (130)
T 1dz3_A           83 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKTT  125 (130)
T ss_dssp             EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC-
T ss_pred             EecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCCC
Confidence            3566778889999999999999999999999999999886643

>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1

Probab=96.92  E-value=0.0011  Score=54.37  Aligned_cols=44  Identities=11%  Similarity=0.114  Sum_probs=38.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+++++||++||.||++.++|...+++++++...
T Consensus        91 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  134 (140)
T 1k68_A           91 LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLS  134 (140)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred             EecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHcc
Confidence            35667788899999999999999999999999999999877643

>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}

Probab=96.91  E-value=0.001  Score=55.53  Aligned_cols=44  Identities=20%  Similarity=0.425  Sum_probs=38.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+...+++++||++||.||++.++|...++++++++..
T Consensus        83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~  126 (143)
T 3jte_A           83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL  126 (143)
T ss_dssp             EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence            35677888899999999999999999999999999999877643

>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}

Probab=96.88  E-value=0.00061  Score=56.95  Aligned_cols=44  Identities=20%  Similarity=0.281  Sum_probs=37.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+++++||++||.||++.++|..++++++++...
T Consensus        87 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~  130 (140)
T 3lua_A           87 ATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR  130 (140)
T ss_dssp             EESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred             EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence            46778888999999999999999999999999999999876543

>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A

Probab=96.85  E-value=0.0012  Score=56.22  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=37.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.+++++||.+||.||++.++|..+++++++...
T Consensus        97 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  139 (149)
T 1i3c_A           97 LTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL  139 (149)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             EECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHHh
Confidence            3566778889999999999999999999999999999887654

>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}

Probab=96.82  E-value=0.00094  Score=55.59  Aligned_cols=42  Identities=19%  Similarity=0.174  Sum_probs=36.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...++++.||.+||.||++.++|...+++++++.
T Consensus        83 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~  124 (133)
T 3b2n_A           83 VTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE  124 (133)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred             EecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence            366778888999999999999999999999999999987553

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=96.81  E-value=0.0015  Score=54.36  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=38.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+...+++++||++||.||++.++|...+++++++...
T Consensus        98 ~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  141 (149)
T 1k66_A           98 MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD  141 (149)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred             EeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhhh
Confidence            35667788899999999999999999999999999999887643

>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y

Probab=96.80  E-value=0.00096  Score=53.92  Aligned_cols=39  Identities=23%  Similarity=0.434  Sum_probs=34.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF   39 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vL   39 (489)
                      +|+..+.+...++++.||.+||.||++.++|...+++++
T Consensus        81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~  119 (120)
T 1tmy_A           81 CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS  119 (120)
T ss_dssp             EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred             EeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence            356777888899999999999999999999999998764

>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}

Probab=96.80  E-value=0.0014  Score=54.36  Aligned_cols=43  Identities=19%  Similarity=0.166  Sum_probs=37.7

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+.....+++++||++||.||++.++|...+++++++...
T Consensus        91 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~  133 (143)
T 3cnb_A           91 TGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA  133 (143)
T ss_dssp             ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred             eCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence            5667788889999999999999999999999999999876543

>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}

Probab=96.80  E-value=0.0013  Score=55.26  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=38.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+...+++++||++||.||++.++|..++++++++...
T Consensus        88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~  131 (147)
T 2zay_A           88 LSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYE  131 (147)
T ss_dssp             EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred             EeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            35677788899999999999999999999999999999877543

>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}

Probab=96.76  E-value=0.0017  Score=55.27  Aligned_cols=44  Identities=20%  Similarity=0.315  Sum_probs=39.4

Q ss_pred             CCCCCchHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelG-A~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+++++| |++||.||++.++|..+++++++++..
T Consensus        92 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~  136 (153)
T 3hv2_A           92 LTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS  136 (153)
T ss_dssp             ECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence            46778888999999999 999999999999999999999877644

>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E

Probab=96.75  E-value=0.00067  Score=55.35  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=35.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR   40 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR   40 (489)
                      +|+..+.+...++++.||.+||.||++.++|...++++++
T Consensus        81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~  120 (124)
T 1srr_A           81 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP  120 (124)
T ss_dssp             EESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred             EEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence            3667778889999999999999999999999999988764

>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}

Probab=96.74  E-value=0.0014  Score=56.17  Aligned_cols=44  Identities=16%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+++++||++||.||++.++|..++++++++...
T Consensus        87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~  130 (154)
T 3gt7_A           87 LTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVKR  130 (154)
T ss_dssp             EECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTCC
T ss_pred             EECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            35677888999999999999999999999999999999877543

>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}

Probab=96.72  E-value=0.0015  Score=54.02  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=38.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+...++++.||++||.||++.++|...+++++++...
T Consensus        88 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~  131 (140)
T 3cg0_A           88 ITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL  131 (140)
T ss_dssp             EECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence            35677788889999999999999999999999999999877654

>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A

Probab=96.72  E-value=0.0012  Score=55.98  Aligned_cols=43  Identities=16%  Similarity=0.250  Sum_probs=38.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...+++++||++||.||++.++|..+++++++++.
T Consensus       100 ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~  142 (150)
T 4e7p_A          100 VTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK  142 (150)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred             EeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence            3667788899999999999999999999999999999887653

>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}

Probab=96.72  E-value=0.0006  Score=57.67  Aligned_cols=44  Identities=18%  Similarity=0.289  Sum_probs=31.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.++++.||.+||.||++.++|...+++++++...
T Consensus        83 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~  126 (141)
T 3cu5_A           83 MSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTVLQ  126 (141)
T ss_dssp             ECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            35666666778899999999999999999999999998876543

>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}

Probab=96.70  E-value=0.0015  Score=60.88  Aligned_cols=43  Identities=19%  Similarity=0.385  Sum_probs=39.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.+|+++||++||.||++.++|..+++.++++..
T Consensus       101 lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~  143 (250)
T 3r0j_A          101 LTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG  143 (250)
T ss_dssp             EECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence            4677888999999999999999999999999999999987653

>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0

Probab=96.65  E-value=0.0021  Score=54.54  Aligned_cols=43  Identities=14%  Similarity=0.227  Sum_probs=37.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.+++++||++||.||++.++|...++++.+...
T Consensus        95 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~  137 (152)
T 3heb_A           95 LTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS  137 (152)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             EecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            3667788889999999999999999999999999999876553

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=96.64  E-value=0.0018  Score=54.96  Aligned_cols=43  Identities=23%  Similarity=0.304  Sum_probs=37.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.+++++||++||.||++.++|...++.+++++.
T Consensus        95 ~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~  137 (152)
T 3eul_A           95 ISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD  137 (152)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred             EEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence            3667788889999999999999999999999999999987654

>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}

Probab=96.63  E-value=0.0015  Score=55.50  Aligned_cols=41  Identities=22%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.+.+.+++++||++||.||++.++|...++.+...
T Consensus        96 ~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~  136 (143)
T 3m6m_D           96 LSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS  136 (143)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred             EeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence            36677888899999999999999999999999999887543

>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A

Probab=96.62  E-value=0.00057  Score=55.66  Aligned_cols=41  Identities=32%  Similarity=0.484  Sum_probs=35.9

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+.+...++++.||.+||.||++.++|...+++++++.
T Consensus        83 s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~  123 (127)
T 2jba_A           83 TARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI  123 (127)
T ss_dssp             EETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred             eCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence            55667778889999999999999999999999999988654

>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0

Probab=96.61  E-value=0.0017  Score=53.79  Aligned_cols=43  Identities=21%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...+++++||++||.||++.++|..+++++.+...
T Consensus        87 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~  129 (136)
T 3hdv_A           87 VSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGE  129 (136)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC---
T ss_pred             EeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCch
Confidence            3567788889999999999999999999999999998875543

>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}

Probab=96.61  E-value=0.0011  Score=54.41  Aligned_cols=42  Identities=24%  Similarity=0.408  Sum_probs=34.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...+++++||++||.||+ +.++|...++++++++
T Consensus        85 ~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~  127 (130)
T 3eod_A           85 ISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS  127 (130)
T ss_dssp             EECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred             EEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence            35677888889999999999999999 9999999999988654

>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}

Probab=96.60  E-value=0.00089  Score=59.56  Aligned_cols=43  Identities=19%  Similarity=0.267  Sum_probs=38.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|++.+.+.+.+|+++||++||.||++.++|...++.++++..
T Consensus        85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~  127 (184)
T 3rqi_A           85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ  127 (184)
T ss_dssp             EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred             EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence            4778888999999999999999999999999999998876654

>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A

Probab=96.58  E-value=0.00096  Score=54.08  Aligned_cols=40  Identities=13%  Similarity=0.193  Sum_probs=30.6

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+.+...++++.||.+||.||++.++|...+++++++
T Consensus        82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~  121 (124)
T 1mb3_A           82 TAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER  121 (124)
T ss_dssp             C------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred             ECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence            5566677788999999999999999999999999887643

>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}

Probab=96.55  E-value=0.0019  Score=53.91  Aligned_cols=43  Identities=26%  Similarity=0.448  Sum_probs=36.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus        81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~  123 (142)
T 2qxy_A           81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP  123 (142)
T ss_dssp             EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred             EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence            3566778889999999999999999999999999999987654

>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3

Probab=96.55  E-value=0.0018  Score=57.76  Aligned_cols=43  Identities=5%  Similarity=0.027  Sum_probs=38.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|++.+.+.+.+++++||++||.||++.++|...++.++++..
T Consensus        85 lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~  127 (196)
T 1qo0_D           85 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE  127 (196)
T ss_dssp             EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred             EEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence            4677888899999999999999999999999999999886643

>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}

Probab=96.48  E-value=0.0014  Score=53.89  Aligned_cols=42  Identities=17%  Similarity=0.104  Sum_probs=31.9

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+... .+++++||++||.||++.++|..++++++++...
T Consensus        84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~  125 (133)
T 3nhm_A           84 SGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA  125 (133)
T ss_dssp             ESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred             eCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence            45555555 7899999999999999999999999999987654

>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}

Probab=96.48  E-value=0.00087  Score=55.25  Aligned_cols=42  Identities=12%  Similarity=0.029  Sum_probs=34.5

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+.+...++++.||++||.||++.++|...++++++++.
T Consensus        81 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~  122 (134)
T 3f6c_A           81 SAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYC  122 (134)
T ss_dssp             ECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred             eCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCE
Confidence            556666778899999999999999999999999999886643

>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}

Probab=96.47  E-value=0.00058  Score=57.37  Aligned_cols=43  Identities=21%  Similarity=0.130  Sum_probs=36.8

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+.+.+.+++++||++||.||++.++|..++++++++++.
T Consensus        85 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~  127 (140)
T 3h5i_A           85 TAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA  127 (140)
T ss_dssp             ESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            4555666677899999999999999999999999999987654

>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A

Probab=96.47  E-value=0.0028  Score=53.94  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=37.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...++++.||++||.||++.++|...++++++++.
T Consensus        81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~  123 (155)
T 1qkk_A           81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR  123 (155)
T ss_dssp             EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHH
Confidence            3556677888999999999999999999999999999987654

>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1

Probab=96.46  E-value=0.0015  Score=53.96  Aligned_cols=41  Identities=24%  Similarity=0.440  Sum_probs=35.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+......++++||++||.||++.++|..++++++++.
T Consensus        82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~  122 (136)
T 1mvo_A           82 TAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS  122 (136)
T ss_dssp             ECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred             ECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence            45556667788999999999999999999999999988654

>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}

Probab=96.46  E-value=0.0013  Score=54.83  Aligned_cols=43  Identities=14%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             CCCCchHHHH-HHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVM-KGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~-kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+..... .++++||++||.||++.++|..++++++++...
T Consensus        87 s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~  130 (140)
T 3grc_A           87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE  130 (140)
T ss_dssp             CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred             ecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence            4555555666 889999999999999999999999999987654

>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}

Probab=96.45  E-value=0.0015  Score=53.97  Aligned_cols=42  Identities=17%  Similarity=0.358  Sum_probs=36.3

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+.+...+++++||++||.||++.++|..++++++++..
T Consensus        87 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~  128 (140)
T 2qr3_A           87 TAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAK  128 (140)
T ss_dssp             EEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC-
T ss_pred             ECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhcc
Confidence            456677888999999999999999999999999999886543

>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0

Probab=96.44  E-value=0.00081  Score=56.17  Aligned_cols=43  Identities=23%  Similarity=0.351  Sum_probs=34.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+.+.+.+++++||++||.||++.++|..+++++++++..
T Consensus        83 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~  125 (140)
T 3n53_A           83 FSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY  125 (140)
T ss_dssp             ECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence            4556667778899999999999999999999999999877643

>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*

Probab=96.43  E-value=0.00049  Score=55.50  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...++++.||.+||.||++.++|..+++++++++
T Consensus        81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~  122 (124)
T 1dc7_A           81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY  122 (124)
T ss_dssp             BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred             EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence            355666677788999999999999999999999999988654

>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}

Probab=96.36  E-value=0.0031  Score=53.51  Aligned_cols=44  Identities=16%  Similarity=0.320  Sum_probs=38.3

Q ss_pred             CCCCCchHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelG-A~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.++++.| |++||.||++.++|...++.+++++..
T Consensus        82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~  126 (151)
T 3kcn_A           82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL  126 (151)
T ss_dssp             EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence            35667788899999999 999999999999999999999876543

>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A

Probab=96.35  E-value=0.0031  Score=56.81  Aligned_cols=42  Identities=24%  Similarity=0.376  Sum_probs=37.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+.+.+++++||++||.||++.++|...++++++..
T Consensus        85 ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~  126 (215)
T 1a04_A           85 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE  126 (215)
T ss_dssp             EECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred             EECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCC
Confidence            467778889999999999999999999999999999988653

>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}

Probab=96.27  E-value=0.0024  Score=54.23  Aligned_cols=42  Identities=17%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+.+...++++.||++||.||++.++|..+++++++++.
T Consensus        86 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~  127 (153)
T 3cz5_A           86 TMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRR  127 (153)
T ss_dssp             ESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCC
T ss_pred             ECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCc
Confidence            566778889999999999999999999999999999876543

>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}

Probab=96.25  E-value=0.0025  Score=59.95  Aligned_cols=42  Identities=24%  Similarity=0.369  Sum_probs=38.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+.+.+|+++||++||.||++.++|..+++.++++.
T Consensus       114 lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~  155 (249)
T 3q9s_A          114 LTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQR  155 (249)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCC
T ss_pred             EECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhc
Confidence            467888899999999999999999999999999999988654

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=96.22  E-value=0.0033  Score=63.75  Aligned_cols=43  Identities=21%  Similarity=0.449  Sum_probs=39.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++.+.+.+.+|+++||++||.||++.++|...+++++++..
T Consensus        78 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~  120 (368)
T 3dzd_A           78 ITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS  120 (368)
T ss_dssp             EECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred             EeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence            5788889999999999999999999999999999999987653

>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A

Probab=96.20  E-value=0.0019  Score=57.97  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=37.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|++.+.+.+.+++++||++||.||++.++|...+++++++..
T Consensus        91 lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~  133 (205)
T 1s8n_A           91 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR  133 (205)
T ss_dssp             EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            3566778888999999999999999999999999999987653

>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}

Probab=96.13  E-value=0.0055  Score=52.02  Aligned_cols=43  Identities=16%  Similarity=0.312  Sum_probs=37.2

Q ss_pred             CCCCCchHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHG-ACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelG-A~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...++++.| |++||.||++.++|...+++++++..
T Consensus        85 ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~  128 (154)
T 2rjn_A           85 ISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF  128 (154)
T ss_dssp             EECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence            35666778889999998 99999999999999999999987654

>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*

Probab=96.13  E-value=0.0049  Score=55.70  Aligned_cols=42  Identities=24%  Similarity=0.431  Sum_probs=38.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+...+++++||++||.||++.++|...+++++++.
T Consensus        77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~  118 (220)
T 1p2f_A           77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE  118 (220)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred             EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence            467788889999999999999999999999999999998764

>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}

Probab=96.12  E-value=0.003  Score=53.52  Aligned_cols=43  Identities=14%  Similarity=0.204  Sum_probs=34.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+...++++.||.+||.||++.++|...+++++++..
T Consensus        84 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~  126 (154)
T 2qsj_A           84 ISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEI  126 (154)
T ss_dssp             C-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCC
T ss_pred             EeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCE
Confidence            4666777888999999999999999999999999999886644

>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B

Probab=96.09  E-value=0.0055  Score=51.09  Aligned_cols=42  Identities=17%  Similarity=0.265  Sum_probs=35.0

Q ss_pred             CCCCCchHHHHHHHhc-CCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQH-GACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALel-GA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.....+++.. ||.+||.||++.++|..+++++++..
T Consensus        78 ~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~  120 (139)
T 2jk1_A           78 ITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF  120 (139)
T ss_dssp             EESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence            3566667788888876 59999999999999999999988654

>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}

Probab=96.07  E-value=0.005  Score=51.20  Aligned_cols=40  Identities=10%  Similarity=0.039  Sum_probs=34.3

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      |+..+.+...+++++||.+||.||++.++|..++.+....
T Consensus        96 s~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~  135 (143)
T 2qvg_A           96 TAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM  135 (143)
T ss_dssp             ESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred             eCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence            5566778899999999999999999999999997775544

>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}

Probab=96.02  E-value=0.0042  Score=50.92  Aligned_cols=37  Identities=24%  Similarity=0.417  Sum_probs=31.1

Q ss_pred             chHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            6 ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         6 d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +.+.+.+++++||++||.||++.++|..+++++....
T Consensus        90 ~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~  126 (132)
T 3lte_A           90 DKAKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG  126 (132)
T ss_dssp             CSHHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred             ChHHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence            3347889999999999999999999999999887544

>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}

Probab=96.02  E-value=0.001  Score=55.39  Aligned_cols=43  Identities=19%  Similarity=0.227  Sum_probs=36.1

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+.+...+++++||++||.||++.++|..++++++++.+.
T Consensus        88 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~  130 (142)
T 3cg4_A           88 TAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN  130 (142)
T ss_dssp             ECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence            4445555667888999999999999999999999999987654

>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A

Probab=96.02  E-value=0.0024  Score=57.18  Aligned_cols=42  Identities=17%  Similarity=0.408  Sum_probs=36.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+.+.+++++||++||.||++.++|...++++++..
T Consensus        82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~  123 (208)
T 1yio_A           82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN  123 (208)
T ss_dssp             EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhh
Confidence            356667777889999999999999999999999999988764

>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*

Probab=96.01  E-value=0.0036  Score=56.50  Aligned_cols=43  Identities=30%  Similarity=0.479  Sum_probs=38.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.+++++||++||.||++.++|..++++++++..
T Consensus        80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~  122 (225)
T 1kgs_A           80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS  122 (225)
T ss_dssp             EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence            3667778889999999999999999999999999999987653

>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}

Probab=95.97  E-value=0.0065  Score=50.63  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=32.5

Q ss_pred             HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            9 RVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         9 ~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      ...++++.||.+||.||++.++|...++++++++.+
T Consensus        95 ~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~  130 (143)
T 2qv0_A           95 HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWEQ  130 (143)
T ss_dssp             THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHHh
Confidence            567899999999999999999999999999877654

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=95.90  E-value=0.0052  Score=62.50  Aligned_cols=42  Identities=19%  Similarity=0.419  Sum_probs=38.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++.+.+.+.+|++.||++||.||++.++|..+++++++.+
T Consensus        78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~  119 (387)
T 1ny5_A           78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR  119 (387)
T ss_dssp             EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence            477888999999999999999999999999999999988654

>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}

Probab=95.87  E-value=0.0042  Score=56.28  Aligned_cols=42  Identities=24%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.+.+.+++++||++||.||+ +.++|...+++++++.
T Consensus        74 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~  116 (223)
T 2hqr_A           74 SSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW  116 (223)
T ss_dssp             EESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred             EECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence            46778889999999999999999999 9999999999987553

>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*

Probab=95.86  E-value=0.0068  Score=61.47  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=38.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||+..+.+.+.+|+++||.+||.||++.++|..+++.+++..
T Consensus        81 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~  122 (459)
T 1w25_A           81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK  122 (459)
T ss_dssp             EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence            477888999999999999999999999999999999988654

>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*

Probab=95.81  E-value=0.0023  Score=58.56  Aligned_cols=42  Identities=5%  Similarity=0.000  Sum_probs=36.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+....++++||++||.||+++++|..+++.++++.
T Consensus        89 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~  130 (225)
T 3klo_A           89 INCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDE  130 (225)
T ss_dssp             EEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTC
T ss_pred             EECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCC
Confidence            356677778889999999999999999999999999988654

>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0

Probab=95.81  E-value=0.0019  Score=52.76  Aligned_cols=40  Identities=25%  Similarity=0.102  Sum_probs=30.7

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+... .+++..||++||.||++.++|...+++..+..
T Consensus        84 s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~  123 (127)
T 3i42_A           84 SGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH  123 (127)
T ss_dssp             ECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred             ECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence            44455555 78889999999999999999999999876554

>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0

Probab=95.64  E-value=0.0033  Score=51.43  Aligned_cols=35  Identities=11%  Similarity=0.157  Sum_probs=30.7

Q ss_pred             HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            8 SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         8 e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +.+.+++.+||++||.||++.++|...++++....
T Consensus        92 ~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~  126 (135)
T 3eqz_A           92 ETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ  126 (135)
T ss_dssp             HHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred             HHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence            66778999999999999999999999999876543

>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A

Probab=95.62  E-value=0.0076  Score=48.43  Aligned_cols=37  Identities=14%  Similarity=0.142  Sum_probs=32.2

Q ss_pred             CchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            5 GETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         5 ~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      .+.+...++++.||.+||.||++.++|..+++++++.
T Consensus        89 ~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~  125 (127)
T 2gkg_A           89 PDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF  125 (127)
T ss_dssp             GGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred             CCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence            4556778899999999999999999999999988643

>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*

Probab=95.46  E-value=0.014  Score=56.77  Aligned_cols=40  Identities=28%  Similarity=0.210  Sum_probs=36.1

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR   40 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLR   40 (489)
                      +|+..+.+.+.+|+++||.+||.||++.++|..+++.+++
T Consensus        99 ~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~  138 (358)
T 3bre_A           99 LSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR  138 (358)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence            4778888999999999999999999999999999988754

>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}

Probab=95.36  E-value=0.0055  Score=55.64  Aligned_cols=42  Identities=26%  Similarity=0.408  Sum_probs=36.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|+..+.....+++++||++||.||++.++|...+++++++.
T Consensus        81 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~  122 (230)
T 2oqr_A           81 VTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG  122 (230)
T ss_dssp             EECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred             EeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            356667778899999999999999999999999999988654

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=95.30  E-value=0.012  Score=58.86  Aligned_cols=42  Identities=26%  Similarity=0.495  Sum_probs=34.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPI-RMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~-~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+.+.+|++.||++||.||+ ..++|...+++++++.
T Consensus        83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~  125 (394)
T 3eq2_A           83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA  125 (394)
T ss_dssp             C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence            57888899999999999999999999 6899998888887653

>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A

Probab=95.29  E-value=0.0038  Score=56.71  Aligned_cols=42  Identities=29%  Similarity=0.461  Sum_probs=36.3

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+.+...+++++||++||.||++.++|...+++++++..
T Consensus        86 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~  127 (233)
T 1ys7_A           86 SARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG  127 (233)
T ss_dssp             ECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence            556666677889999999999999999999999999987653

>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}

Probab=95.05  E-value=0.0099  Score=49.60  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+......+..+||.+||.||++.++|...++++++++
T Consensus        84 s~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~  124 (138)
T 3c3m_A           84 TAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARR  124 (138)
T ss_dssp             ESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC
T ss_pred             ECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHh
Confidence            44444445555666778999999999999999999887543

>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}

Probab=95.05  E-value=0.0042  Score=57.02  Aligned_cols=43  Identities=19%  Similarity=0.261  Sum_probs=38.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.++++.||++||.||++.++|...++.++++..
T Consensus        81 lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~  123 (225)
T 3c3w_A           81 LTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRS  123 (225)
T ss_dssp             GGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCe
Confidence            4677888999999999999999999999999999999987643

>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A

Probab=94.99  E-value=0.0054  Score=56.53  Aligned_cols=41  Identities=32%  Similarity=0.538  Sum_probs=35.3

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      |+..+...+.+++++||++||.||++.++|...++.++++.
T Consensus        83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~  123 (238)
T 2gwr_A           83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN  123 (238)
T ss_dssp             EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred             eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence            55666677889999999999999999999999999887543

>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*

Probab=93.99  E-value=0.0096  Score=49.96  Aligned_cols=33  Identities=12%  Similarity=0.005  Sum_probs=23.0

Q ss_pred             CCchHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 011273            4 DGETSRVMKGVQHGACDYLLKPIRMKELRNIWQ   36 (489)
Q Consensus         4 ~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q   36 (489)
                      ..+.+.+.+++++||++||.||++.++|..+++
T Consensus        98 ~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~  130 (145)
T 3kyj_B           98 VSGSPHAARARELGADGVVAKPSGTVSHDLEEK  130 (145)
T ss_dssp             STTSSHHHHHHHTTCSCCCBCCCSCC------C
T ss_pred             cCChHHHHHHHhCCCCEEEeCCCCHHHHHHHHH
Confidence            455667889999999999999999777766543

>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}

Probab=93.71  E-value=0.034  Score=56.12  Aligned_cols=42  Identities=10%  Similarity=0.080  Sum_probs=35.3

Q ss_pred             CCCCch-----HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGET-----SRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~-----e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+.     ..+.+|+++||.+||.||++.++|...+++++++..
T Consensus        84 s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~~  130 (400)
T 3sy8_A           84 SEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARRQ  130 (400)
T ss_dssp             CCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHTT
T ss_pred             cCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhhh
Confidence            445554     667889999999999999999999999999887654

>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}

Probab=93.08  E-value=0.048  Score=44.38  Aligned_cols=41  Identities=17%  Similarity=0.147  Sum_probs=31.8

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      |+..+.+...++++.|  +||.||++.++|..+++++++....
T Consensus        86 s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~~  126 (132)
T 2rdm_A           86 SGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAREG  126 (132)
T ss_dssp             ESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred             eCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCCC
Confidence            4555666667777666  7999999999999999998876543

>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*

Probab=92.93  E-value=0.035  Score=44.25  Aligned_cols=29  Identities=17%  Similarity=0.314  Sum_probs=25.5

Q ss_pred             HHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273           11 MKGVQHGACDYLLKPIRMKELRNIWQHVF   39 (489)
Q Consensus        11 ~kALelGA~DYLvKP~~~eEL~~i~q~vL   39 (489)
                      .++++.||.+||.||++.++|...+++++
T Consensus        87 ~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~  115 (116)
T 3a10_A           87 SDMSSWAADEYVVKSFNFDELKEKVKKLL  115 (116)
T ss_dssp             GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred             HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence            46778899999999999999999988764

>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}

Probab=92.07  E-value=0.019  Score=49.99  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=23.8

Q ss_pred             HHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 011273           13 GVQHGACDYLLKPIRMKELRNIWQHVFR   40 (489)
Q Consensus        13 ALelGA~DYLvKP~~~eEL~~i~q~vLR   40 (489)
                      +.++||++||.|||++++|..+++++++
T Consensus        94 ~~~~g~~~yl~KP~~~~~L~~~l~~~~~  121 (123)
T 2lpm_A           94 DTRYSNIPLLTKPFLDSELEAVLVQISK  121 (123)
T ss_dssp             CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred             HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence            3467999999999999999998877643

>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}

Probab=91.46  E-value=0.11  Score=43.13  Aligned_cols=28  Identities=18%  Similarity=0.317  Sum_probs=24.0

Q ss_pred             hcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273           15 QHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus        15 elGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      .+||++||.||++.++|..+++.+++..
T Consensus       104 ~~g~~~~l~KP~~~~~L~~~i~~~~~~~  131 (140)
T 3c97_A          104 GAELDEYVSKPLNPNQLRDVVLTCHSEG  131 (140)
T ss_dssp             CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred             hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence            6799999999999999999999887543

>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}

Probab=90.90  E-value=0.038  Score=43.29  Aligned_cols=28  Identities=21%  Similarity=0.136  Sum_probs=25.1

Q ss_pred             HHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273           12 KGVQHGACDYLLKPIRMKELRNIWQHVF   39 (489)
Q Consensus        12 kALelGA~DYLvKP~~~eEL~~i~q~vL   39 (489)
                      .+++.||.+||.||++.++|...+++++
T Consensus        89 ~~~~~g~~~~l~kp~~~~~l~~~l~~~~  116 (119)
T 2j48_A           89 PLLTAQASAILSKPLDPQLLLTTLQGLC  116 (119)
T ss_dssp             HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred             hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence            6788999999999999999999887654

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=90.38  E-value=0.28  Score=46.39  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=24.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRM   28 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~   28 (489)
                      +|++.+.+...+|+++||++||.||+..
T Consensus        80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~  107 (259)
T 3luf_A           80 LTADISEDKREAWLEAGVLDYVMKDSRH  107 (259)
T ss_dssp             EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred             EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence            5788999999999999999999999743

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=89.89  E-value=0.067  Score=59.30  Aligned_cols=42  Identities=0%  Similarity=-0.112  Sum_probs=36.0

Q ss_pred             CCCCc-hHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHhhh
Q 011273            2 SVDGE-TSRVMKGVQHGACDYLLKPIRMKE-LRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d-~e~v~kALelGA~DYLvKP~~~eE-L~~i~q~vLRrr~   43 (489)
                      |+.++ .+.+..++..||+|||.||++..+ |..++++++|+..
T Consensus        92 Ta~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~~  135 (755)
T 2vyc_A           92 GDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRYR  135 (755)
T ss_dssp             ECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHHH
T ss_pred             ecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHhh
Confidence            45555 667788999999999999999999 8899999998864

>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}

Probab=89.21  E-value=0.099  Score=45.17  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=20.3

Q ss_pred             HHHHHHHhcCCceEEeCCCCHHHH
Q 011273            8 SRVMKGVQHGACDYLLKPIRMKEL   31 (489)
Q Consensus         8 e~v~kALelGA~DYLvKP~~~eEL   31 (489)
                      ..+.+++++||++||.||++.++|
T Consensus       113 ~~~~~~~~~ga~~~l~KP~~~~~l  136 (164)
T 3t8y_A          113 AITIEALRNGAVDFITKPHGSISL  136 (164)
T ss_dssp             HHHHHHHHTTCCEEEECSSSSSCG
T ss_pred             HHHHHHHHcCcCEEEeCCCCHHHH
Confidence            467799999999999999995444

>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1

Probab=88.89  E-value=0.24  Score=49.78  Aligned_cols=35  Identities=17%  Similarity=0.295  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCCceEEeCCCCH---------HHHHHHHHHHHHhh
Q 011273            8 SRVMKGVQHGACDYLLKPIRM---------KELRNIWQHVFRKK   42 (489)
Q Consensus         8 e~v~kALelGA~DYLvKP~~~---------eEL~~i~q~vLRrr   42 (489)
                      +...+++++||++||.||++.         ++|...++++.+.+
T Consensus        91 ~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~  134 (349)
T 1a2o_A           91 EVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR  134 (349)
T ss_dssp             HHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence            458899999999999999984         77777777776543

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=87.14  E-value=0.29  Score=43.98  Aligned_cols=40  Identities=20%  Similarity=0.387  Sum_probs=32.0

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKP--IRMKELRNIWQHVFRK   41 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP--~~~eEL~~i~q~vLRr   41 (489)
                      +.....+.+.++++.||++||.||  ++..+|...+.+.+..
T Consensus        60 ~~~~~~~~~~~~~~~Ga~~~l~kp~~~~~~~l~~~i~~~~~~  101 (237)
T 3cwo_X           60 SAMGQQAMVIEAIKAGAKDFIVNTAAVENPSLITQIAQTFGS  101 (237)
T ss_dssp             CCSSTHHHHHHHHHTTCCEEEESHHHHHCTHHHHHHHHHHTG
T ss_pred             ECCCCHHHHHHHHHCCHHheEeCCcccChHHHHHHHHHHhCC
Confidence            344457889999999999999999  7888888887776643

>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A

Probab=86.72  E-value=0.37  Score=39.59  Aligned_cols=27  Identities=30%  Similarity=0.482  Sum_probs=23.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCC
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIR   27 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~   27 (489)
                      +|+..+.+...++++.||++||.||+.
T Consensus        92 ls~~~~~~~~~~~~~~g~~~~l~kP~~  118 (137)
T 2pln_A           92 SSDNPTSEEEVHAFEQGADDYIAKPYR  118 (137)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSCS
T ss_pred             EeCCCCHHHHHHHHHcCCceeeeCCCC
Confidence            356777888999999999999999975

>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}

Probab=86.58  E-value=0.62  Score=38.71  Aligned_cols=57  Identities=26%  Similarity=0.268  Sum_probs=36.8

Q ss_pred             cceEecchhHHHHHHHHHHHhCC-CCCChH---------------HHHhhcCCCcchHHHHHHhhhhhhhhHh
Q 011273          105 KARVVWSIDLHQKFVKAVNQIGF-DKVGPK---------------KILDLMNVPWLTRENVASHLQKYRLYLT  161 (489)
Q Consensus       105 K~R~~WT~eLH~~Fv~AV~~LG~-~kAtPK---------------rILElM~v~gLT~~~V~SHLQKyR~~~~  161 (489)
                      +..-+|.++|...|++|.+.+=. .+.+.+               .|+.+---.--|+.+|.||||--|...+
T Consensus         4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~   76 (82)
T 2hzd_A            4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKS   76 (82)
T ss_dssp             GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHT
T ss_pred             CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHh
Confidence            34568999999999999998652 122211               1111111245688999999998666544

>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*

Probab=84.82  E-value=0.95  Score=45.68  Aligned_cols=42  Identities=24%  Similarity=0.343  Sum_probs=35.8

Q ss_pred             CCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            2 SVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         2 SA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      |+..+.....++++.||.||+.||+..+++..++..+++++.
T Consensus       231 t~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~  272 (459)
T 1w25_A          231 VDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKR  272 (459)
T ss_dssp             ECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHH
Confidence            556677778899999999999999999999999988776543

>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A

Probab=82.85  E-value=1.7  Score=37.83  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=32.8

Q ss_pred             chHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            6 ETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         6 d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +++.+.+-+..||. ||+.|+.+.-|.+.|++.+|..
T Consensus        84 ~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh  119 (121)
T 3q7r_A           84 DEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH  119 (121)
T ss_dssp             CHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence            57889999999999 9999999999999999998753

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.84  E-value=1.2  Score=35.10  Aligned_cols=52  Identities=25%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             cceEecchhHHHHHHHHHHHhCCCCCCh---HHHHhhcCCCcchHHHHHHhhhhhhh
Q 011273          105 KARVVWSIDLHQKFVKAVNQIGFDKVGP---KKILDLMNVPWLTRENVASHLQKYRL  158 (489)
Q Consensus       105 K~R~~WT~eLH~~Fv~AV~~LG~~kAtP---KrILElM~v~gLT~~~V~SHLQKyR~  158 (489)
                      ..+-.||.|=+.+|+++|+..|.+...+   ..|-++|  +|-|..+|+.|-|+|-.
T Consensus         6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~~l~   60 (75)
T 2yum_A            6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQKYFI   60 (75)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHHHHG
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            3455799999999999999999654334   3455554  68999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	489
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	6e-26
d1dcfa_	134	c.23.1.2 (A:) Receiver domain of the ethylene rece	3e-05
d1dz3a_	123	c.23.1.1 (A:) Sporulation response regulator Spo0A	4e-05
d1jbea_	128	c.23.1.1 (A:) CheY protein {Escherichia coli [TaxI	5e-05
d2ayxa1	133	c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C	1e-04
d2a9pa1	117	c.23.1.1 (A:2-118) DNA-binding response regulator	1e-04
d1ys7a2	121	c.23.1.1 (A:7-127) Transcriptional regulatory prot	2e-04
d1p2fa2	120	c.23.1.1 (A:1-120) Response regulator DrrB {Thermo	2e-04
d1kgsa2	122	c.23.1.1 (A:2-123) PhoB receiver domain {Thermotog	3e-04
d1ny5a1	137	c.23.1.1 (A:1-137) Transcriptional activator sigm5	4e-04
d2pl1a1	119	c.23.1.1 (A:1-119) PhoP receiver domain {Escherich	4e-04
d1zesa1	121	c.23.1.1 (A:3-123) PhoB receiver domain {Escherich	4e-04
d1zh2a1	119	c.23.1.1 (A:2-120) Transcriptional regulatory prot	4e-04
d1p6qa_	129	c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti	5e-04
d1mvoa_	121	c.23.1.1 (A:) PhoP receiver domain {Bacillus subti	5e-04
d1zgza1	120	c.23.1.1 (A:2-121) TorCAD operon transcriptional r	5e-04
d1a04a2	138	c.23.1.1 (A:5-142) Nitrate/nitrite response regula	6e-04
d1mb3a_	123	c.23.1.1 (A:) Cell division response regulator Div	6e-04
d1yioa2	128	c.23.1.1 (A:3-130) Response regulatory protein Sty	8e-04
d1dbwa_	123	c.23.1.1 (A:) Transcriptional regulatory protein F	8e-04
d1k68a_	140	c.23.1.1 (A:) Response regulator for cyanobacteria	0.001
d1w25a1	139	c.23.1.1 (A:2-140) Response regulator PleD, receiv	0.001
d1peya_	119	c.23.1.1 (A:) Sporulation response regulator Spo0F	0.001
d1k66a_	149	c.23.1.1 (A:) Response regulator for cyanobacteria	0.001
d1xhfa1	121	c.23.1.1 (A:2-122) Aerobic respiration control pro	0.002
d1w25a2	153	c.23.1.1 (A:141-293) Response regulator PleD, rece	0.002
d1u0sy_	118	c.23.1.1 (Y:) CheY protein {Thermotoga maritima [T	0.002
d2r25b1	128	c.23.1.1 (B:1087-1214) Response regulator Sin1 {Ba	0.002
d1krwa_	123	c.23.1.1 (A:) NTRC receiver domain {Salmonella typ	0.003

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 98.1 bits (244), Expect = 6e-26
 Identities = 36/63 (57%), Positives = 50/63 (79%)

Query: 101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYL 160
           ++ KK RV+W+ +LH KF+ AV+ +G ++  PKKILDLMNV  LTRENVASHLQK+R+ L
Sbjct: 1   TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60

Query: 161 TRL 163
            ++
Sbjct: 61  KKV 63

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 9/43 (20%), Positives = 21/43 (48%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI 43
           +S + + S   K +  G    LLKP+ +  +R++   +   ++
Sbjct: 89  LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPRV 131

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]} Length = 123

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++  G+     K V+ GA  ++LKP  M+ L +  + V+ K
Sbjct: 82  LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK 122

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++ + +   ++   Q GA  Y++KP     L      +F K
Sbjct: 85  VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 40.1 bits (93), Expect = 1e-04
 Identities = 6/48 (12%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRD 48
           ++ +       + ++ G    L KP+ +  ++         ++ + RD
Sbjct: 86  VTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAE-RVRKSRD 132

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 11/41 (26%), Positives = 21/41 (51%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           +S        + G++ GA DY+ KP   +EL+   + + R+
Sbjct: 77  LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 117

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 38.8 bits (90), Expect = 2e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
           +S        + G++ GA DYL+KP  + EL    + + R++
Sbjct: 79  LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 120

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.5 bits (89), Expect = 2e-04
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
           +++  +   V+KG + GA DY+ KP   + L    +    ++
Sbjct: 77  LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]} Length = 122

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 38.6 bits (89), Expect = 3e-04
 Identities = 13/42 (30%), Positives = 23/42 (54%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
           ++   +    +KG+  GA DYL KP  ++EL    + + R+K
Sbjct: 79  LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRK 120

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 137

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 8/42 (19%), Positives = 19/42 (45%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
           ++  G     ++ ++ GA D+L KP  ++E+          +
Sbjct: 78  ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++        ++ +  GA DY+ KP  ++E+    Q + R+
Sbjct: 78  LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

 Score = 38.0 bits (88), Expect = 4e-04
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++  GE    ++G++ GA DY+ KP   KEL    + V R+
Sbjct: 80  LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 120

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           +S   E S  +  +  GA DYL KP  + EL+   +   R+
Sbjct: 77  LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 117

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 40
           ++  G+ + V K    GA + L KP  +++++   + VF 
Sbjct: 87  LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++   E    + G++ GA DY+ KP   +E+    + + R+
Sbjct: 80  LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 120

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 120

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 9/41 (21%), Positives = 23/41 (56%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++   +    + G++ GA DY+ KP+ ++EL    +++  +
Sbjct: 78  VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 118

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} Length = 138

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 10/42 (23%), Positives = 17/42 (40%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
            SV      V+  ++ GA  YLLK +  ++L          +
Sbjct: 82  FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE 123

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} Length = 123

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 5/42 (11%), Positives = 15/42 (35%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
           ++         +  + G   Y+ KPI +       + +  ++
Sbjct: 81  VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLERQ 122

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 7/42 (16%), Positives = 20/42 (47%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK 42
           ++  G+    ++ ++ GA ++L KP   + L +  +   +  
Sbjct: 80  ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN 121

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]} Length = 123

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

 Score = 37.3 bits (86), Expect = 8e-04
 Identities = 7/42 (16%), Positives = 19/42 (45%), Gaps = 4/42 (9%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKEL----RNIWQHV 38
           ++  G+    ++ ++ GA D++ KP     +        +H+
Sbjct: 81  ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]} Length = 140

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

 Score = 37.0 bits (85), Expect = 0.001
 Identities = 5/47 (10%), Positives = 13/47 (27%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVR 47
           +S       +          Y+ K   + +L  I + +    +    
Sbjct: 91  LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWLSTAT 137

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 139

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK--IHEVRDIE 50
           ++        ++G++ GA D+L KPI    L    + + R K  I E+R  E
Sbjct: 81  ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKLVIDELRQRE 132

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]} Length = 119

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 9/33 (27%), Positives = 17/33 (51%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 33
           M+  GE   + +  + GA  +  KP  + E+R+
Sbjct: 79  MTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]} Length = 149

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 6/40 (15%), Positives = 14/40 (35%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFR 40
           M+       +     +    Y++KP+ +  L    Q   +
Sbjct: 98  MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIK 137

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 9/41 (21%), Positives = 20/41 (48%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           ++        + G++ GA DY+ KP   +EL    +++  +
Sbjct: 79  LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 119

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

 Score = 36.6 bits (84), Expect = 0.002
 Identities = 13/61 (21%), Positives = 28/61 (45%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIHEVRDIENIEGFESIHM 60
           M    +  R++K ++ G  D L +PI  +EL    +   ++K +      N++    + +
Sbjct: 91  MVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYTDYLRNNLDHSLELAV 150

Query: 61  T 61
           T
Sbjct: 151 T 151

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} Length = 118

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 9/38 (23%), Positives = 20/38 (52%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHV 38
            S  G+ + V++ ++ GA D+++KP +   +      V
Sbjct: 80  CSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 117

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 128

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 8/34 (23%), Positives = 19/34 (55%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNI 34
           ++   + S + + ++ G   +L KPI+  +L+ I
Sbjct: 86  LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTI 119

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]} Length = 123

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 1   MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK 41
           M+   +    +   Q GA DYL KP  + E   + +     
Sbjct: 81  MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	489
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	99.9
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	98.01
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	97.95
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	97.95
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	97.94
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	97.92
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	97.89
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	97.87
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	97.83
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	97.82
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	97.76
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	97.76
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	97.75
d1mvoa_	121	PhoP receiver domain {Bacillus subtilis [TaxId: 14	97.73
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	97.73
d1w25a2	153	Response regulator PleD, receiver domain {Caulobac	97.72
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	97.68
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	97.57
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	97.56
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	97.54
d1p6qa_	129	CheY protein {Sinorhizobium meliloti, CheY2 [TaxId	97.54
d1yioa2	128	Response regulatory protein StyR, N-terminal domai	97.52
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	97.5
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	97.49
d1k66a_	149	Response regulator for cyanobacterial phytochrome	97.46
d1k68a_	140	Response regulator for cyanobacterial phytochrome	97.44
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	97.43
d1qo0d_	189	Positive regulator of the amidase operon AmiR {Pse	97.42
d1s8na_	190	Probable two-component system transcriptional regu	97.42
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	97.32
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	97.31
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	97.27
d1a2oa1	140	Methylesterase CheB, N-terminal domain {Salmonella	92.14
d2b4aa1	118	Hypothetical protein BH3024 {Bacillus halodurans [	91.47

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=1.1e-24  Score=171.95  Aligned_cols=63  Identities=57%  Similarity=0.936  Sum_probs=60.2

Q ss_pred             CccccceEecchhHHHHHHHHHHHhCCCCCChHHHHhhcCCCcchHHHHHHhhhhhhhhHhhh
Q 011273          101 SSTKKARVVWSIDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLTRL  163 (489)
Q Consensus       101 ~t~kK~R~~WT~eLH~~Fv~AV~~LG~~kAtPKrILElM~v~gLT~~~V~SHLQKyR~~~~~~  163 (489)
                      +..+|+|++||+|||++|++||++||.++||||+||++|+++|+|++||+|||||||+++++.
T Consensus         1 s~~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl~l~k~   63 (64)
T d1irza_           1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV   63 (64)
T ss_dssp             CCCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999999999999999999999999999999999874

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.01  E-value=2.1e-06  Score=71.98  Aligned_cols=43  Identities=23%  Similarity=0.405  Sum_probs=39.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||+.++.+.+.+|+++||+|||.|||+.++|..++++++++.+
T Consensus        77 it~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~r~r  119 (120)
T d1p2fa2          77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLEREK  119 (120)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHCC
T ss_pred             EecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHcc
Confidence            5788999999999999999999999999999999999998754

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.2e-06  Score=70.57  Aligned_cols=42  Identities=31%  Similarity=0.486  Sum_probs=39.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||+..+.+...+|+++||++||.|||+.++|..++++++||+
T Consensus        77 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrr~  118 (119)
T d1zh2a1          77 LSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH  118 (119)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhhh
Confidence            578889999999999999999999999999999999999874

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=3.7e-06  Score=70.31  Aligned_cols=41  Identities=22%  Similarity=0.379  Sum_probs=38.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++++.+...+|+++||++||.|||+.++|..++++++||
T Consensus        78 lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~lrR  118 (119)
T d2pl1a1          78 LTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR  118 (119)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred             eeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            57889999999999999999999999999999999999976

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=3.5e-06  Score=70.07  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=39.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++.+.+...+|+++||+|||.||++.++|..++++++||.
T Consensus        78 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lrR~  119 (120)
T d1zgza1          78 VTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI  119 (120)
T ss_dssp             EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEccCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHccc
Confidence            578899999999999999999999999999999999999874

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=3.9e-06  Score=70.37  Aligned_cols=42  Identities=21%  Similarity=0.373  Sum_probs=39.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++++.+...+|+++||+|||.|||++++|..+++++++|.
T Consensus        79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~v~~~l~Rs  120 (121)
T d1xhfa1          79 LTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT  120 (121)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence            578899999999999999999999999999999999999763

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.89  E-value=4.1e-06  Score=69.69  Aligned_cols=41  Identities=27%  Similarity=0.451  Sum_probs=38.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ||+..+.+...+|+++||+|||.|||++++|..++++++||
T Consensus        77 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~lrR  117 (117)
T d2a9pa1          77 LSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR  117 (117)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred             EecCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhCC
Confidence            57888999999999999999999999999999999999875

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.87  E-value=3e-06  Score=70.93  Aligned_cols=43  Identities=30%  Similarity=0.479  Sum_probs=40.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++++.+...+|+++||++||.|||++++|.+++++++|++.
T Consensus        79 lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~r~~  121 (122)
T d1kgsa2          79 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS  121 (122)
T ss_dssp             EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred             EcCCCCHHHHHHHHHcCCceeecCCCCHHHHHHHHHHHHHHhc
Confidence            5788999999999999999999999999999999999998763

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.83  E-value=4.9e-06  Score=69.83  Aligned_cols=42  Identities=24%  Similarity=0.414  Sum_probs=39.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++.+.+.+.+|+++||++||.|||+.++|..+++++++++
T Consensus        81 ~t~~~~~~~~~~a~~~Ga~dyl~KP~~~~eL~~~i~~~l~~~  122 (123)
T d1krwa_          81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY  122 (123)
T ss_dssp             SCCCSCHHHHHHHHHHTEEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred             EecCCCHHHHHHHHHcCCCeEEeCcCCHHHHHHHHHHHHHcc
Confidence            689999999999999999999999999999999999999875

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=97.82  E-value=7e-06  Score=70.42  Aligned_cols=43  Identities=21%  Similarity=0.376  Sum_probs=40.0

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++++.+.+.+|+++||+|||.||++.++|..++++++++++
T Consensus        78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~~  120 (140)
T d1qkka_          78 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRR  120 (140)
T ss_dssp             EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHcCCCEeecCCCCHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999987654

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=97.76  E-value=1e-05  Score=69.17  Aligned_cols=43  Identities=26%  Similarity=0.346  Sum_probs=39.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++++.+...+|+++||+|||.|||+.++|..+++++++++.
T Consensus        81 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~lr~~~  123 (139)
T d1w25a1          81 ITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL  123 (139)
T ss_dssp             EECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999999999999987654

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=9.8e-06  Score=67.60  Aligned_cols=41  Identities=34%  Similarity=0.591  Sum_probs=38.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ||++++.+...+|+++||++||.|||+.++|..++++++||
T Consensus        80 lt~~~~~~~~~~~~~~G~~d~l~KP~~~~~L~~~v~~~lrR  120 (121)
T d1zesa1          80 LTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR  120 (121)
T ss_dssp             EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence            58889999999999999999999999999999999999876

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.75  E-value=8.7e-06  Score=69.46  Aligned_cols=43  Identities=19%  Similarity=0.393  Sum_probs=39.6

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++++.+.+.+|+++||+|||.||++.++|..+++++++++.
T Consensus        78 lT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~  120 (137)
T d1ny5a1          78 ITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK  120 (137)
T ss_dssp             EEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             EECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999999999999999887643

>d1mvoa_ c.23.1.1 (A:) PhoP receiver domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.73  E-value=6.5e-06  Score=68.61  Aligned_cols=41  Identities=24%  Similarity=0.462  Sum_probs=37.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ||+..+.+...+|+++||++||.|||++++|..++++++||
T Consensus        80 lt~~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~lrR  120 (121)
T d1mvoa_          80 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR  120 (121)
T ss_dssp             EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred             EEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            46777778889999999999999999999999999999975

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.73  E-value=2.6e-06  Score=71.56  Aligned_cols=42  Identities=29%  Similarity=0.519  Sum_probs=38.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++++.+...+|+++||++||.|||+.++|..+++++++++
T Consensus        79 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~rr  120 (121)
T d1ys7a2          79 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR  120 (121)
T ss_dssp             EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHcC
Confidence            478888888999999999999999999999999999999875

>d1w25a2 c.23.1.1 (A:141-293) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=97.72  E-value=1.4e-05  Score=69.73  Aligned_cols=44  Identities=25%  Similarity=0.343  Sum_probs=40.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+.++.+...+|+++||+|||.|||+.++|..+++.++++++.
T Consensus        91 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~~  134 (153)
T d1w25a2          91 MVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRY  134 (153)
T ss_dssp             EECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCHHHHHHHHhcCcceEEECCCCHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999987653

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=97.68  E-value=1.4e-05  Score=67.02  Aligned_cols=41  Identities=15%  Similarity=0.329  Sum_probs=37.9

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      ||++++.+...+|+++||++||.|||+.++|..++++++++
T Consensus        81 lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~a~e~  121 (123)
T d1dbwa_          81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH  121 (123)
T ss_dssp             EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred             EEeeCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999988754

>d1jbea_ c.23.1.1 (A:) CheY protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=3.4e-05  Score=64.81  Aligned_cols=42  Identities=21%  Similarity=0.495  Sum_probs=39.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++.+.+.+.+|+++||++||.|||+..+|..++++++++.
T Consensus        85 lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~l~~~l~r~  126 (128)
T d1jbea_          85 VTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL  126 (128)
T ss_dssp             EESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHc
Confidence            588999999999999999999999999999999999999764

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=3e-05  Score=65.82  Aligned_cols=43  Identities=9%  Similarity=0.187  Sum_probs=39.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++++.+...+|+++||.+||.|||+.++|..++++++++.+
T Consensus        86 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~r~r  128 (133)
T d2ayxa1          86 VTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR  128 (133)
T ss_dssp             EESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred             EeccCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            5788899999999999999999999999999999999887654

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=97.54  E-value=2.6e-05  Score=64.97  Aligned_cols=39  Identities=23%  Similarity=0.395  Sum_probs=36.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVF   39 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vL   39 (489)
                      ||++++.+...+|+++||++||.|||+.++|..++++++
T Consensus        79 lt~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~L  117 (119)
T d1peya_          79 MTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL  117 (119)
T ss_dssp             EESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHS
T ss_pred             EecCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHC
Confidence            588999999999999999999999999999999998765

>d1p6qa_ c.23.1.1 (A:) CheY protein {Sinorhizobium meliloti, CheY2 [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Sinorhizobium meliloti, CheY2 [TaxId: 382]

Probab=97.54  E-value=3.4e-05  Score=65.02  Aligned_cols=41  Identities=24%  Similarity=0.468  Sum_probs=38.7

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++.+.+...+|+++||++||.|||+.++|..++++++++
T Consensus        87 lt~~~~~~~~~~a~~~G~~~~l~KP~~~~~L~~~i~~vl~~  127 (129)
T d1p6qa_          87 LTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA  127 (129)
T ss_dssp             CCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred             EEecCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999875

>d1yioa2 c.23.1.1 (A:3-130) Response regulatory protein StyR, N-terminal domain {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulatory protein StyR, N-terminal domain
species: Pseudomonas fluorescens [TaxId: 294]

Probab=97.52  E-value=1.4e-05  Score=67.16  Aligned_cols=42  Identities=17%  Similarity=0.408  Sum_probs=38.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++++.+...+|+++||++||.|||+.++|..+++++++..
T Consensus        80 lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~  121 (128)
T d1yioa2          80 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLN  121 (128)
T ss_dssp             EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred             EEEECCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
Confidence            477888888999999999999999999999999999998754

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=97.50  E-value=4.8e-05  Score=65.31  Aligned_cols=43  Identities=16%  Similarity=0.166  Sum_probs=39.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||+..+.+.+.+|+++||++||.||++.++|.++++++++...
T Consensus        92 lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~l~~~~~  134 (144)
T d1i3ca_          92 LTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFWL  134 (144)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred             EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence            5788999999999999999999999999999999998877654

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=2.1e-05  Score=65.81  Aligned_cols=41  Identities=29%  Similarity=0.506  Sum_probs=37.8

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++++.+...+|+++||++||.||++.++|..++++++++
T Consensus        82 ~t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~v~~k  122 (123)
T d1dz3a_          82 LTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGK  122 (123)
T ss_dssp             EEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHC
T ss_pred             EECcCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence            47788899999999999999999999999999999998864

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=97.46  E-value=6.1e-05  Score=65.01  Aligned_cols=44  Identities=14%  Similarity=0.280  Sum_probs=40.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKIH   44 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~~   44 (489)
                      +|+..+.+.+.+|+++||++||.||++.++|..+++.+++....
T Consensus        98 lT~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~~~  141 (149)
T d1k66a_          98 MTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWLD  141 (149)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHHT
T ss_pred             EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHhc
Confidence            57889999999999999999999999999999999999987543

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=97.44  E-value=6.4e-05  Score=64.21  Aligned_cols=43  Identities=12%  Similarity=0.118  Sum_probs=39.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|+..+.+.+.+|+++||++||.||++.++|..+++.+++...
T Consensus        91 ls~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~i~~~~~  133 (140)
T d1k68a_          91 LSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL  133 (140)
T ss_dssp             EESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHh
Confidence            5788899999999999999999999999999999999877654

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=3.6e-05  Score=65.10  Aligned_cols=41  Identities=20%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|++++.+...+|+++||++||.|||+.++|..++++++..
T Consensus        86 lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~  126 (128)
T d2r25b1          86 LTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA  126 (128)
T ss_dssp             EESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred             EECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence            57899999999999999999999999999999999887643

>d1qo0d_ c.23.1.3 (D:) Positive regulator of the amidase operon AmiR {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Positive regulator of the amidase operon AmiR
domain: Positive regulator of the amidase operon AmiR
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.42  E-value=4.5e-05  Score=66.88  Aligned_cols=43  Identities=5%  Similarity=0.027  Sum_probs=39.3

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      ||++.+.+.+.+|++.||++||.|||+.++|...++.++....
T Consensus        84 lta~~~~~~~~~al~~Ga~~yL~KP~~~~~L~~~i~~~~~~~~  126 (189)
T d1qo0d_          84 LVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE  126 (189)
T ss_dssp             EECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred             EeccchHHHHHHHHHcCCcEEEEecchhhHHHHHHhhcccccc
Confidence            5899999999999999999999999999999999998876544

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=2.4e-05  Score=69.58  Aligned_cols=43  Identities=19%  Similarity=0.281  Sum_probs=39.5

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKKI   43 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr~   43 (489)
                      +|++++.+.+.+|+++||+|||.||+++++|..+++.++++.+
T Consensus        81 lTa~~~~~~~~~al~~Ga~~yl~KP~~~~~L~~~i~~~~~~~~  123 (190)
T d1s8na_          81 LTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR  123 (190)
T ss_dssp             EEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred             EeCCCCHHHHHHHHHcCCCEeccCCCCHHHHHHHHHHHHHhhH
Confidence            5889999999999999999999999999999999998886644

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=97.32  E-value=4e-05  Score=63.70  Aligned_cols=41  Identities=12%  Similarity=0.201  Sum_probs=32.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRK   41 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRr   41 (489)
                      +|+..+.....+++++||++||.|||+.++|..++++++++
T Consensus        81 lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~r  121 (123)
T d1mb3a_          81 VTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER  121 (123)
T ss_dssp             EC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred             EEEecCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhC
Confidence            47777788889999999999999999999999999999865

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=8.9e-05  Score=62.82  Aligned_cols=42  Identities=24%  Similarity=0.376  Sum_probs=38.2

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      +|++.+.+.+.+|+++||.+||.||++.++|...++++++..
T Consensus        82 lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~v~~g~  123 (138)
T d1a04a2          82 FSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGE  123 (138)
T ss_dssp             EECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSC
T ss_pred             EEEECCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHCCC
Confidence            478889999999999999999999999999999999987643

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.27  E-value=8.3e-05  Score=63.05  Aligned_cols=42  Identities=21%  Similarity=0.421  Sum_probs=38.4

Q ss_pred             CCCCCchHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 011273            1 MSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKK   42 (489)
Q Consensus         1 MSA~~d~e~v~kALelGA~DYLvKP~~~eEL~~i~q~vLRrr   42 (489)
                      ||++.+.+...+|+++||++||.||++.++|..+++++++.+
T Consensus        89 lT~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~l~~r  130 (134)
T d1dcfa_          89 LSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR  130 (134)
T ss_dssp             EESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred             EeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHhhhh
Confidence            478889999999999999999999999999999999988654

>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Methylesterase CheB, N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.14  E-value=0.063  Score=44.74  Aligned_cols=21  Identities=24%  Similarity=0.512  Sum_probs=18.1

Q ss_pred             hHHHHHHHhcCCceEEeCCCC
Q 011273            7 TSRVMKGVQHGACDYLLKPIR   27 (489)
Q Consensus         7 ~e~v~kALelGA~DYLvKP~~   27 (489)
                      .+.+.+|+++||.+||.||+.
T Consensus        90 ~~~~~~al~~Ga~~yl~KP~~  110 (140)
T d1a2oa1          90 SEVTLRALELGAIDFVTKPQL  110 (140)
T ss_dssp             HHHHHHHHHHTCCEEEECSSS
T ss_pred             hHHHHHHHHcCCCEEEECCCC
Confidence            356789999999999999974

>d2b4aa1 c.23.1.1 (A:2-119) Hypothetical protein BH3024 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Hypothetical protein BH3024
species: Bacillus halodurans [TaxId: 86665]

Probab=91.47  E-value=0.017  Score=47.43  Aligned_cols=26  Identities=31%  Similarity=0.547  Sum_probs=21.8

Q ss_pred             HHHHhcCCceEEeCCCCHHHHHHHHHH
Q 011273           11 MKGVQHGACDYLLKPIRMKELRNIWQH   37 (489)
Q Consensus        11 ~kALelGA~DYLvKP~~~eEL~~i~q~   37 (489)
                      .++...|| |||.|||++++|..++++
T Consensus        89 ~~~~~~~~-dyl~KP~~~~eL~~~i~~  114 (118)
T d2b4aa1          89 IESSEHNL-SYLQKPFAISELRAAIDY  114 (118)
T ss_dssp             CCCSSSCE-EEEESSCCHHHHHHHHHH
T ss_pred             HHHhhcCC-CEEECCCCHHHHHHHHHH
Confidence            34566777 899999999999999876