Citrus Sinensis ID: 011305
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 489 | 2.2.26 [Sep-21-2011] | |||||||
| Q8IYT4 | 538 | Katanin p60 ATPase-contai | yes | no | 0.642 | 0.583 | 0.583 | 1e-100 | |
| A0JMA9 | 542 | Katanin p60 ATPase-contai | yes | no | 0.642 | 0.579 | 0.580 | 2e-99 | |
| Q9D3R6 | 539 | Katanin p60 ATPase-contai | yes | no | 0.629 | 0.571 | 0.583 | 5e-99 | |
| Q3B8D5 | 505 | Katanin p60 ATPase-contai | N/A | no | 0.564 | 0.546 | 0.504 | 4e-78 | |
| Q5RII9 | 485 | Katanin p60 ATPase-contai | no | no | 0.613 | 0.618 | 0.491 | 2e-77 | |
| Q5XIK7 | 488 | Katanin p60 ATPase-contai | no | no | 0.621 | 0.622 | 0.480 | 3e-76 | |
| Q0IIR9 | 492 | Katanin p60 ATPase-contai | no | no | 0.599 | 0.595 | 0.486 | 5e-76 | |
| Q9SEX2 | 523 | Katanin p60 ATPase-contai | no | no | 0.597 | 0.558 | 0.468 | 5e-76 | |
| Q8K0T4 | 488 | Katanin p60 ATPase-contai | yes | no | 0.621 | 0.622 | 0.477 | 8e-76 | |
| Q9BW62 | 490 | Katanin p60 ATPase-contai | no | no | 0.621 | 0.620 | 0.480 | 9e-76 |
| >sp|Q8IYT4|KATL2_HUMAN Katanin p60 ATPase-containing subunit A-like 2 OS=Homo sapiens GN=KATNAL2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/322 (58%), Positives = 239/322 (74%), Gaps = 8/322 (2%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + + L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
L + TEGYSGSDI+LV +EAAM+P+R++ LE Q + D Q+ + D L
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515
Query: 464 NTRPSAHLHAHRYEKFNADYGS 485
+T+PSA A RY + ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 3 |
| >sp|A0JMA9|KATL2_XENTR Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus tropicalis GN=katnal2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (931), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 187/322 (58%), Positives = 238/322 (73%), Gaps = 8/322 (2%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KP+ ++E R LA + RDI +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTGPGGEHEGSRRMKTELLVQMDGLARSDDLVF 399
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM + LP + +G E L Y
Sbjct: 400 VLAASNLPWELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPVSNSSGVELRTDLDYST 459
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
L T+GYSGSDIRLV KEAAM+P+R++ LE + + + + D L
Sbjct: 460 LGAETDGYSGSDIRLVCKEAAMRPVRKIFDALENHHSEHKNLPVISLDTVTTSDFLEVLA 519
Query: 464 NTRPSAHLHAHRYEKFNADYGS 485
+T+PSA A +Y + ++ S
Sbjct: 520 HTKPSAKSLAEKYAAWQKEFES 541
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9D3R6|KATL2_MOUSE Katanin p60 ATPase-containing subunit A-like 2 OS=Mus musculus GN=Katnal2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 362 bits (928), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 189/324 (58%), Positives = 241/324 (74%), Gaps = 16/324 (4%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES------LPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + + L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 461
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + LP Q+ + +D
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514
Query: 462 LKNTRPSAHLHAHRY----EKFNA 481
L +T+PSA RY EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q3B8D5|KATL2_XENLA Katanin p60 ATPase-containing subunit A-like 2 OS=Xenopus laevis GN=katnal2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (748), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 163/323 (50%), Positives = 208/323 (64%), Gaps = 47/323 (14%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KP+ ++E R LA + RDI +P+V+W+ I GL+ AKRL+KEAVV PI+
Sbjct: 220 SERLIKPVGAFIGGNSEMRELAAVISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIR 279
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 280 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 339
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350
+VLFELAR+HAPSTIFLDE+++++SQRG
Sbjct: 340 RVLFELARYHAPSTIFLDELESVMSQRGTG------------------------------ 369
Query: 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP---SQTGEE---SLPYDLL 404
P ELD AMLRRLEKRILV LP EAR+AM + LP + +G E L Y L
Sbjct: 370 ------PGELDYAMLRRLEKRILVDLPSKEARQAMIQHWLPPISNSSGVELRMDLDYSTL 423
Query: 405 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG--PIRPEDVEIAL 462
E T+GYSGSDIRLV KEAAM+P+R++ LE + +LP I + D L
Sbjct: 424 GEETDGYSGSDIRLVCKEAAMRPVRKIFDALENHH--SEHKKLPVISLETVTTSDFSEVL 481
Query: 463 KNTRPSAHLHAHRYEKFNADYGS 485
+T+PSA A +Y + ++ S
Sbjct: 482 AHTKPSAKSLAEKYSAWQNEFES 504
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Xenopus laevis (taxid: 8355) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q5RII9|KTNA1_DANRE Katanin p60 ATPase-containing subunit A1 OS=Danio rerio GN=katna1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 153/311 (49%), Positives = 214/311 (68%), Gaps = 11/311 (3%)
Query: 183 FD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 241
FD E + L ++L RDII +P+V W+ I LE AK+LLKEAVV+P+ P++F G+ P
Sbjct: 177 FDRGGEDKDLIDALERDIISQNPNVTWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRP 236
Query: 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA 301
WKG+L+ GPPGTGKT+LAKAVATEC+TTFFN+S+S++ SK+RG+SEKL+++LFE+AR +A
Sbjct: 237 WKGVLMVGPPGTGKTLLAKAVATECRTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYA 296
Query: 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE-----LVFVLAATNL 356
P+TIF+DEID+I S+RG + EHEASRR+K ELL+QMDG+ + E +V VLAATN
Sbjct: 297 PTTIFIDEIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGTSENDPSKMVMVLAATNF 355
Query: 357 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 416
PW++D A+ RRLEKRI +PLP + R + + L + D + E+ EGYSG+DI
Sbjct: 356 PWDIDEALRRRLEKRIYIPLPSAKGRVDLLKINLKELDLANDVNMDKIAEQMEGYSGADI 415
Query: 417 RLVSKEAAMQPLRRLMVLLEGRQ-EVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAH 474
V ++A++ +RR + L + P DE+ P ED E ALK S +
Sbjct: 416 TNVCRDASLMAMRRRIEGLTPEEIRNLPKDEMHM--PTTMEDFETALKKVSKSVSAADLE 473
Query: 475 RYEKFNADYGS 485
+YEK+ A++GS
Sbjct: 474 KYEKWIAEFGS 484
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays, such as that seen during disassembly of interphase microtubules at the G2-M transition. May also be required for microtubule release from the centrosome after nucleation. In mitotic spindles this could allow depolymerization of the microtubule end proximal to the centrosome, and subsequent poleward microtubule flux. Danio rerio (taxid: 7955) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q5XIK7|KATL1_RAT Katanin p60 ATPase-containing subunit A-like 1 OS=Rattus norvegicus GN=Katnal1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 219/314 (69%), Gaps = 10/314 (3%)
Query: 180 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 238
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235
Query: 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 298
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295
Query: 299 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---QSDE---LVFVLA 352
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ ++D+ +V VLA
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 354
Query: 353 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + E+TEGYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDIHLEDIAEKTEGYS 414
Query: 413 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 471
G+DI + ++A++ +RR + L + A E Q+ P+ D+E+ALK S +
Sbjct: 415 GADITNICRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDLELALKKIAKSVSAA 473
Query: 472 HAHRYEKFNADYGS 485
+YEK+ ++GS
Sbjct: 474 DLEKYEKWMVEFGS 487
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Rattus norvegicus (taxid: 10116) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q0IIR9|KTNA1_XENTR Katanin p60 ATPase-containing subunit A1 OS=Xenopus tropicalis GN=katna1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (730), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 149/306 (48%), Positives = 211/306 (68%), Gaps = 13/306 (4%)
Query: 189 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 248
+ L E+L RDII +P+++W+ I LE AK+LLKEAVV+P+ P++F G+ PWKG+L+
Sbjct: 190 KDLIEALERDIISQNPNIRWDDIADLEEAKKLLKEAVVLPMWMPEFFKGIRRPWKGVLMV 249
Query: 249 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 308
GPPGTGKT+LAKAVATECKTTFFNIS+S++ SK+RG+SEKL+++LFE+AR +AP+TIF+D
Sbjct: 250 GPPGTGKTLLAKAVATECKTTFFNISSSTLTSKYRGESEKLVRLLFEMARFYAPTTIFID 309
Query: 309 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE------LVFVLAATNLPWELDA 362
EID+I S+RG + EHEASRR+K ELL+QMDG+ + E +V VLAATN PW++D
Sbjct: 310 EIDSICSRRGTS-EEHEASRRVKAELLVQMDGVGGASENEDPSKMVMVLAATNFPWDIDE 368
Query: 363 AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKE 422
A+ RRLEKRI +PLP + R + L + + + + E +GYSG+DI V ++
Sbjct: 369 ALRRRLEKRIYIPLPSAKGREELLRINLKELELADDVNIECIAENMDGYSGADITNVCRD 428
Query: 423 AAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKF 479
A++ +RR + L E + ++ DD P ED E+ALK S +YEK+
Sbjct: 429 ASLMAMRRRIEGLTPEEIRNLSRDD---MHMPTTMEDFEMALKKVSKSVSASDIEKYEKW 485
Query: 480 NADYGS 485
++GS
Sbjct: 486 IEEFGS 491
|
Catalytic subunit of a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays and the release of microtubules from the centrosome following nucleation. Xenopus tropicalis (taxid: 8364) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A1 OS=Arabidopsis thaliana GN=AAA1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (729), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 214/305 (70%), Gaps = 13/305 (4%)
Query: 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 250
LA L RD++ +P V+W+ + GL AKRLL+EAVV+P+ P+YF G+ PWKG+L+FGP
Sbjct: 221 LAAMLERDVLDSTPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGP 280
Query: 251 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 310
PGTGKT+LAKAVATEC TTFFN+S++++ SKWRG+SE++++ LF+LAR +APSTIF+DEI
Sbjct: 281 PGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEI 340
Query: 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWELDAA 363
D++ + RG EHE+SRR+K+ELL+Q+DG++ S ++V VLAATN PW++D A
Sbjct: 341 DSLCNSRG-GSGEHESSRRVKSELLVQVDGVSNTATNEDGSRKIVMVLAATNFPWDIDEA 399
Query: 364 MLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 423
+ RRLEKRI +PLPD E+R+A+ L + + + + RTEGYSG D+ V ++A
Sbjct: 400 LRRRLEKRIYIPLPDFESRKALININLRTVEVASDVNIEDVARRTEGYSGDDLTNVCRDA 459
Query: 424 AMQPLRRLMVLLEGRQEVA--PDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFN 480
+M +RR + + R E+ D++ P+ D E A++ +PS + ++EK+
Sbjct: 460 SMNGMRR-KIAGKTRDEIKNMSKDDISN-DPVAMCDFEEAIRKVQPSVSSSDIEKHEKWL 517
Query: 481 ADYGS 485
+++GS
Sbjct: 518 SEFGS 522
|
Severs microtubules in an ATP-dependent manner. May be required for reorientation of cortical microtubule arrays during cellular elongation. Failure to correctly orient these arrays drastically compromises fiber length, cell wall thickness and mechanical strength. May also be required for the spatial organization of developmental cues within the root. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q8K0T4|KATL1_MOUSE Katanin p60 ATPase-containing subunit A-like 1 OS=Mus musculus GN=Katnal1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 285 bits (728), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 150/314 (47%), Positives = 219/314 (69%), Gaps = 10/314 (3%)
Query: 180 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 238
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 176 IPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 235
Query: 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 298
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 236 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 295
Query: 299 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---QSDE---LVFVLA 352
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ ++D+ +V VLA
Sbjct: 296 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 354
Query: 353 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + ++TEGYS
Sbjct: 355 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKISLREVELDPDVHLEDIADKTEGYS 414
Query: 413 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 471
G+DI + ++A++ +RR + L + A E Q+ P+ D+E+ALK S +
Sbjct: 415 GADITNICRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTRGDLELALKKIAKSVSAA 473
Query: 472 HAHRYEKFNADYGS 485
+YEK+ ++GS
Sbjct: 474 DLEKYEKWMVEFGS 487
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
| >sp|Q9BW62|KATL1_HUMAN Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 151/314 (48%), Positives = 217/314 (69%), Gaps = 10/314 (3%)
Query: 180 LPNFDSAE-TRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 238
+P FD A + L E+L RDI+ +P + W+ I LE AK+LL+EAVV+P+ P +F G+
Sbjct: 178 MPKFDGAGYDKDLVEALERDIVSRNPSIHWDDIADLEEAKKLLREAVVLPMWMPDFFKGI 237
Query: 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 298
PWKG+L+ GPPGTGKTMLAKAVATEC TTFFN+S+S++ SK+RG+SEKL+++LFE+AR
Sbjct: 238 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMAR 297
Query: 299 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---QSDE---LVFVLA 352
+AP+TIF+DEID+I S+RG + EHEASRR+K+ELLIQMDG+ ++D+ +V VLA
Sbjct: 298 FYAPTTIFIDEIDSICSRRGTS-DEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLA 356
Query: 353 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412
ATN PW++D A+ RRLEKRI +PLP + R + + L + + + + E+ EGYS
Sbjct: 357 ATNFPWDIDEALRRRLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYS 416
Query: 413 GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHL 471
G+DI V ++A++ +RR + L + A E Q+ P+ D E+ALK S +
Sbjct: 417 GADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQM-PVTKGDFELALKKIAKSVSAA 475
Query: 472 HAHRYEKFNADYGS 485
+YEK+ ++GS
Sbjct: 476 DLEKYEKWMVEFGS 489
|
Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 489 | ||||||
| 255557305 | 408 | Katanin p60 ATPase-containing subunit, p | 0.799 | 0.958 | 0.795 | 0.0 | |
| 297740706 | 397 | unnamed protein product [Vitis vinifera] | 0.797 | 0.982 | 0.798 | 0.0 | |
| 359483871 | 406 | PREDICTED: katanin p60 ATPase-containing | 0.797 | 0.960 | 0.780 | 0.0 | |
| 388503432 | 404 | unknown [Lotus japonicus] | 0.797 | 0.965 | 0.774 | 1e-177 | |
| 356512187 | 403 | PREDICTED: katanin p60 ATPase-containing | 0.797 | 0.967 | 0.764 | 1e-176 | |
| 356524963 | 405 | PREDICTED: katanin p60 ATPase-containing | 0.797 | 0.962 | 0.760 | 1e-175 | |
| 224078976 | 384 | predicted protein [Populus trichocarpa] | 0.754 | 0.960 | 0.770 | 1e-174 | |
| 357476445 | 402 | Katanin p60 ATPase-containing subunit A- | 0.801 | 0.975 | 0.742 | 1e-169 | |
| 224113079 | 314 | predicted protein [Populus trichocarpa] | 0.642 | 1.0 | 0.894 | 1e-163 | |
| 222619270 | 406 | hypothetical protein OsJ_03507 [Oryza sa | 0.764 | 0.921 | 0.755 | 1e-160 |
| >gi|255557305|ref|XP_002519683.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] gi|223541100|gb|EEF42656.1| Katanin p60 ATPase-containing subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 327/411 (79%), Positives = 356/411 (86%), Gaps = 20/411 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDG--------SSLNSNGH 138
MADEP TRW+FQ FGRKK+ E + G + V++G ++ N NGH
Sbjct: 1 MADEPSVTRWSFQDFKLFYDAKFGRKKMSETQNG-VAGPAVANGIGNSSTSNATSNGNGH 59
Query: 139 VQNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRD 198
V+NTSDMA+YEQYR Q + S + NGVL N I++R QK LLP FDSAETRALAE LCRD
Sbjct: 60 VKNTSDMAIYEQYRNQDRSSNHS--NGVLPNGIDDRPQKSLLPAFDSAETRALAEGLCRD 117
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
I+RG+PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML
Sbjct: 118 IVRGNPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 177
Query: 259 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318
AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIF+DEIDAIISQRG
Sbjct: 178 AKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFIDEIDAIISQRG 237
Query: 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 378
E RSEHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 238 EGRSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPE 297
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
EARRAM+E LLP Q E+ LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRRLM LLE R
Sbjct: 298 PEARRAMYEELLPPQPDEDKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRLMALLEDR 357
Query: 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
QEV PDDELP++GPI PED+E ALKNTRPSAHLHAHRYEKFNADYGS+ILQ
Sbjct: 358 QEVVPDDELPKVGPITPEDIETALKNTRPSAHLHAHRYEKFNADYGSQILQ 408
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297740706|emb|CBI30888.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 651 bits (1679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/401 (79%), Positives = 356/401 (88%), Gaps = 11/401 (2%)
Query: 96 MADEPMPTRWTFQFGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHVQNTSDMAVY 148
MADEP TRW+FQFGRKK EPEK + E +PVS+G+S N GHV+NTSD+A+Y
Sbjct: 1 MADEPFLTRWSFQFGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHVKNTSDLAIY 58
Query: 149 EQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKW 208
EQYRTQ +GS + NGVL++ +E+ QK LLP+F+SA+ RAL ESL RDIIRGSPDVKW
Sbjct: 59 EQYRTQERGSANG--NGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDIIRGSPDVKW 116
Query: 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 268
+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT
Sbjct: 117 DSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 176
Query: 269 TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASR 328
TFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE RSEHEASR
Sbjct: 177 TFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGEGRSEHEASR 236
Query: 329 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 388
RLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARRAMFE
Sbjct: 237 RLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEE 296
Query: 389 LLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 448
LLPS GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM LE + EV P++ELP
Sbjct: 297 LLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKAEVVPEEELP 356
Query: 449 QIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 357 KVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 397
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483871|ref|XP_002276286.2| PREDICTED: katanin p60 ATPase-containing subunit A-like 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/410 (78%), Positives = 356/410 (86%), Gaps = 20/410 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITE---RPVSDGSS----LNSNGHV 139
MADEP TRW+FQ FGRKK EPEK + E +PVS+G+S N GHV
Sbjct: 1 MADEPFLTRWSFQDFKMFYDVKFGRKK--EPEKHDAAESSGKPVSNGNSSNGTANGGGHV 58
Query: 140 QNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDI 199
+NTSD+A+YEQYRTQ +GS + NGVL++ +E+ QK LLP+F+SA+ RAL ESL RDI
Sbjct: 59 KNTSDLAIYEQYRTQERGSANG--NGVLSDRYDEKPQKSLLPSFESADMRALGESLSRDI 116
Query: 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA 259
IRGSPDVKW+SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA
Sbjct: 117 IRGSPDVKWDSIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLA 176
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
KAVATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDA+ISQRGE
Sbjct: 177 KAVATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDALISQRGE 236
Query: 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 379
RSEHEASRRLKTELL+QMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 237 GRSEHEASRRLKTELLVQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEP 296
Query: 380 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 439
EARRAMFE LLPS GEE LPYDL+VERTEGYSGSDIRL+ KEAAMQPLRRLM LE +
Sbjct: 297 EARRAMFEELLPSVPGEEKLPYDLMVERTEGYSGSDIRLLCKEAAMQPLRRLMAHLEDKA 356
Query: 440 EVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
EV P++ELP++GPI+ +D+E ALKNTRPSAHLH HRY+KFN DYGS+ILQ
Sbjct: 357 EVVPEEELPKVGPIKHDDIETALKNTRPSAHLHVHRYDKFNTDYGSQILQ 406
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388503432|gb|AFK39782.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 629 bits (1622), Expect = e-177, Method: Compositional matrix adjust.
Identities = 316/408 (77%), Positives = 350/408 (85%), Gaps = 18/408 (4%)
Query: 96 MADE-PMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGSSL----NSNGHVQN 141
MADE PMPTRW+FQ FGRKK+ + GE ++ V +GSS+ N N H +
Sbjct: 1 MADEEPMPTRWSFQDFKLYYDSKFGRKKVVQ--NGENADKAVGNGSSMSVVSNGNVHSKR 58
Query: 142 TSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIR 201
+SDMA+YEQ R+Q Q T N V N ++ER QK LLP F+SAE R LAESL RDIIR
Sbjct: 59 SSDMAIYEQLRSQGQNGIHT--NDVSPNNMDERPQKSLLPPFESAEMRTLAESLSRDIIR 116
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 261
GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA
Sbjct: 117 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 176
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VATECKTTFFNISASSVVSKWRGDSEKL+KVLF+LARHHAPSTIFLDEIDAIISQRGEAR
Sbjct: 177 VATECKTTFFNISASSVVSKWRGDSEKLVKVLFQLARHHAPSTIFLDEIDAIISQRGEAR 236
Query: 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEA 381
SEHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EA
Sbjct: 237 SEHEASRRLKTELLIQMDGLTRTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEA 296
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEV 441
R AMFE LLP Q EES+PYDLLV +TEGYSGSDIRL+ KE AMQPLRRLM LE R+++
Sbjct: 297 RVAMFEELLPPQPDEESIPYDLLVNQTEGYSGSDIRLLCKEVAMQPLRRLMSQLEQREDL 356
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
P++ELP++GPIRPED++ ALKNTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 357 VPEEELPKVGPIRPEDIQAALKNTRPSAHLHAHKYDKFNADYGSQILQ 404
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356512187|ref|XP_003524802.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 624 bits (1609), Expect = e-176, Method: Compositional matrix adjust.
Identities = 311/407 (76%), Positives = 349/407 (85%), Gaps = 17/407 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGSSLN----SNGHVQNT 142
MAD+PMPTRW+FQ FGRKK+ E T++ VS+G+S+ SNG+ +
Sbjct: 1 MADDPMPTRWSFQDFKLYYDAKFGRKKVAE-NGDTATDKAVSNGNSVTVTIVSNGN-KRA 58
Query: 143 SDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRG 202
S+MAVYEQ+R + G NG + +++ER QK LLP F+SAE RALAESL RDIIRG
Sbjct: 59 SEMAVYEQFRGE--GLNQIHTNGFVPTIVDERPQKSLLPPFESAEMRALAESLSRDIIRG 116
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 262
SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV
Sbjct: 117 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 176
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
ATECKTTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARS
Sbjct: 177 ATECKTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARS 236
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 382
EHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ AR
Sbjct: 237 EHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPVAR 296
Query: 383 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 442
RAMFE LLP Q EE +PYD+LV++TEGYSGSDIRL+ KE AMQPLRRLM LE Q+V
Sbjct: 297 RAMFEELLPQQPDEEPIPYDILVDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQSQDVV 356
Query: 443 PDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
P++ELP++GPI+ ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 357 PEEELPKVGPIKSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 403
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356524963|ref|XP_003531097.1| PREDICTED: katanin p60 ATPase-containing subunit A-like 2-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 311/409 (76%), Positives = 349/409 (85%), Gaps = 19/409 (4%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 140
MAD+PMPTRW+FQ FGRKK+ E + + VS+G+ ++ SNG+ +
Sbjct: 1 MADDPMPTRWSFQDFKLCYDAKFGRKKVAE-NGDDAAGKAVSNGNGNSVTVAIVSNGN-K 58
Query: 141 NTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDII 200
S+MAVYEQ+R++ Q T NG + + +ER QK LLP F+SAE RALAESL RDII
Sbjct: 59 RASEMAVYEQFRSEGQNQIHT--NGFVPTLTDERPQKSLLPPFESAEMRALAESLSRDII 116
Query: 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 260
RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK
Sbjct: 117 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 176
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVATEC TTFFNISASSVVSKWRGDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEA
Sbjct: 177 AVATECNTTFFNISASSVVSKWRGDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEA 236
Query: 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTE 380
RSEHEASRRLKTELLIQMDGLT++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+
Sbjct: 237 RSEHEASRRLKTELLIQMDGLTKTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPV 296
Query: 381 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440
ARRAMFE LLP Q GEES+PYD+L ++TEGYSGSDIRL+ KE AMQPLRRLM LE Q+
Sbjct: 297 ARRAMFEELLPQQPGEESIPYDILEDKTEGYSGSDIRLLCKETAMQPLRRLMSQLEQNQD 356
Query: 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
V P++ELP++GPIR ED+E AL+NTRPSAHLHAH+Y+KFNADYGS+ILQ
Sbjct: 357 VVPEEELPKVGPIRSEDIETALRNTRPSAHLHAHKYDKFNADYGSQILQ 405
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224078976|ref|XP_002305703.1| predicted protein [Populus trichocarpa] gi|222848667|gb|EEE86214.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 315/409 (77%), Positives = 335/409 (81%), Gaps = 40/409 (9%)
Query: 96 MADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGS------SLNSNGHVQ 140
MADEP TRW+FQ FGRKK E S + + N NGHV
Sbjct: 1 MADEPSVTRWSFQDFKTFYDGKFGRKKAAAAAAAEAEAASDSQQNGQTTVVASNGNGHVN 60
Query: 141 NTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDII 200
N+SDMA+YEQ +K LLP FDSAETRALAESLCRDII
Sbjct: 61 NSSDMAIYEQ-------------------------KKSLLPAFDSAETRALAESLCRDII 95
Query: 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 260
RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK
Sbjct: 96 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 155
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA
Sbjct: 156 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 215
Query: 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTE 380
RSEHEASRRLKTELLIQMDGLT+++ELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ E
Sbjct: 216 RSEHEASRRLKTELLIQMDGLTRTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPE 275
Query: 381 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440
AR AMFE LLPSQ EE LPYDLLVERTEG+SGSDIRL+ KEAAMQPLRR+M LLE +E
Sbjct: 276 ARAAMFEELLPSQPDEEKLPYDLLVERTEGFSGSDIRLLCKEAAMQPLRRIMTLLEDTEE 335
Query: 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
V P+DELP++GPIRPED+E ALKNTRPSAHLHAHRY+KFNADYGS+ILQ
Sbjct: 336 VVPEDELPKVGPIRPEDIETALKNTRPSAHLHAHRYDKFNADYGSQILQ 384
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476445|ref|XP_003608508.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] gi|355509563|gb|AES90705.1| Katanin p60 ATPase-containing subunit A-like protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/404 (74%), Positives = 336/404 (83%), Gaps = 12/404 (2%)
Query: 95 AMADEPMPTRWTFQ---------FGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDM 145
A DEPMPTRW+F+ GRKK+ E + ++ S G + N N H + TSD
Sbjct: 2 AADDEPMPTRWSFEEFKKYYDVRLGRKKLVENGENAVSNG-NSSGIASNGNSHGKVTSDR 60
Query: 146 AVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPD 205
A+Y+Q+ Q QG T NG N ++E+ +K LLP F+SAE R LAESL RDIIRGSP+
Sbjct: 61 AIYDQF--QSQGQNPTHTNGFGPNGVDEKPKKSLLPPFESAEMRTLAESLSRDIIRGSPN 118
Query: 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265
VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE
Sbjct: 119 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 178
Query: 266 CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 325
C TTFFNISASS+VSKWRGDSEKL+KVLFELARHHAP+TIFLDEIDAIISQRGE RSEHE
Sbjct: 179 CNTTFFNISASSIVSKWRGDSEKLVKVLFELARHHAPATIFLDEIDAIISQRGEGRSEHE 238
Query: 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAM 385
ASRRLKTELLIQMDGL ++DELVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EARRAM
Sbjct: 239 ASRRLKTELLIQMDGLARTDELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAM 298
Query: 386 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 445
FE LLP Q EE +PYDLLV+RTEGYSGSDIRL+ KE AMQPLRRLM LE +V P++
Sbjct: 299 FEELLPLQPDEEPMPYDLLVDRTEGYSGSDIRLLCKETAMQPLRRLMTQLEQEPDVVPEE 358
Query: 446 ELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
ELP++GP+ PEDVE AL+NTRPSAHL AH+Y+ FNADYGS+ILQ
Sbjct: 359 ELPKVGPVVPEDVEAALRNTRPSAHLLAHKYDTFNADYGSQILQ 402
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113079|ref|XP_002332658.1| predicted protein [Populus trichocarpa] gi|222832704|gb|EEE71181.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 581 bits (1498), Expect = e-163, Method: Compositional matrix adjust.
Identities = 281/314 (89%), Positives = 299/314 (95%)
Query: 176 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 235
QKPL+P FDS+ETRALAESLCRDIIRGSP+VKWESIKGLENAKRLLKEAVVMPIKYPKYF
Sbjct: 1 QKPLIPAFDSSETRALAESLCRDIIRGSPNVKWESIKGLENAKRLLKEAVVMPIKYPKYF 60
Query: 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 295
TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE
Sbjct: 61 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 120
Query: 296 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355
LARHHAPSTIFLDEIDAIISQRGEA SEHEASRRLKTELLIQMDGLT++ ELVFVLAATN
Sbjct: 121 LARHHAPSTIFLDEIDAIISQRGEASSEHEASRRLKTELLIQMDGLTRTKELVFVLAATN 180
Query: 356 LPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415
LPWELDAAMLRRLEKRILVPLP+ EARR MFE LLPSQ E+ LPYDLLVERTEG+SGSD
Sbjct: 181 LPWELDAAMLRRLEKRILVPLPEPEARRTMFEELLPSQPDEDMLPYDLLVERTEGFSGSD 240
Query: 416 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR 475
IRL+ KEAAMQPLRRLM LLE R+E+ PDDELP++GP+R ED+E ALKNTRPSAHLHAHR
Sbjct: 241 IRLLCKEAAMQPLRRLMTLLEDREEIVPDDELPKVGPLRSEDIETALKNTRPSAHLHAHR 300
Query: 476 YEKFNADYGSEILQ 489
+EKFN+DYGS+ILQ
Sbjct: 301 HEKFNSDYGSQILQ 314
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|222619270|gb|EEE55402.1| hypothetical protein OsJ_03507 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 572 bits (1475), Expect = e-160, Method: Compositional matrix adjust.
Identities = 291/385 (75%), Positives = 332/385 (86%), Gaps = 11/385 (2%)
Query: 105 WTFQFGRKKIKEPEKGEITERPVSDGSSLNSNGHV-QNTSDMAVYEQYRTQFQGSGSTCL 163
W +FG KK +EPE+ + ++ +NG V + TSD+AVYEQ+ + Q +
Sbjct: 27 WESRFGGKKEQEPEQ--------NGHANGVANGSVRKRTSDLAVYEQF--EQQARQTEVR 76
Query: 164 NGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKE 223
+ + + +QKPLLP+F+SAE R LAE+L RDIIRGSPDVKWESIKGLENAKRLLKE
Sbjct: 77 AAAIRDGNADAIQKPLLPSFESAEMRNLAETLLRDIIRGSPDVKWESIKGLENAKRLLKE 136
Query: 224 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283
AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS+VSKWR
Sbjct: 137 AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSIVSKWR 196
Query: 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343
GDSEKL+KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT+
Sbjct: 197 GDSEKLVKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTK 256
Query: 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL 403
+++LVFVLAATNLPWELDAAMLRRLEKRILVPLP+ EAR AMFE LLPS T + +PYD
Sbjct: 257 TNDLVFVLAATNLPWELDAAMLRRLEKRILVPLPEAEARHAMFEELLPSTTSKLEVPYDT 316
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
LVE+TEGYSGSDIRLV KEAAMQPLRRLM +LE R E+ P++ELP++GP++PED+E+AL+
Sbjct: 317 LVEKTEGYSGSDIRLVCKEAAMQPLRRLMSVLEARDELVPEEELPEVGPLKPEDIEVALR 376
Query: 464 NTRPSAHLHAHRYEKFNADYGSEIL 488
NTRPSAHLHAHRYEKFN DYGS+IL
Sbjct: 377 NTRPSAHLHAHRYEKFNQDYGSQIL 401
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 489 | ||||||
| TAIR|locus:2062274 | 393 | CCP1 "conserved in ciliated sp | 0.775 | 0.964 | 0.722 | 3.5e-146 | |
| UNIPROTKB|Q8IYT4 | 538 | KATNAL2 "Katanin p60 ATPase-co | 0.642 | 0.583 | 0.590 | 3.9e-92 | |
| UNIPROTKB|E2RK60 | 535 | KATNAL2 "Uncharacterized prote | 0.638 | 0.583 | 0.586 | 6.3e-92 | |
| UNIPROTKB|J9P5W4 | 378 | KATNAL2 "Uncharacterized prote | 0.638 | 0.825 | 0.586 | 6.3e-92 | |
| UNIPROTKB|E1BAN2 | 534 | KATNAL2 "Uncharacterized prote | 0.638 | 0.584 | 0.583 | 1e-91 | |
| UNIPROTKB|E1BZ64 | 466 | KATNAL2 "Uncharacterized prote | 0.642 | 0.673 | 0.583 | 1.7e-91 | |
| UNIPROTKB|J9PBP3 | 598 | KATNAL2 "Uncharacterized prote | 0.619 | 0.506 | 0.6 | 4.5e-91 | |
| MGI|MGI:1924234 | 539 | Katnal2 "katanin p60 subunit A | 0.629 | 0.571 | 0.583 | 5.7e-91 | |
| RGD|1564708 | 522 | Katnal2 "katanin p60 subunit A | 0.633 | 0.593 | 0.583 | 1.2e-90 | |
| ZFIN|ZDB-GENE-051113-156 | 485 | katnal2 "katanin p60 subunit A | 0.611 | 0.616 | 0.554 | 9.7e-80 |
| TAIR|locus:2062274 CCP1 "conserved in ciliated species and in the land plants 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1428 (507.7 bits), Expect = 3.5e-146, P = 3.5e-146
Identities = 291/403 (72%), Positives = 332/403 (82%)
Query: 98 DEPMPTRWTF---------QFGRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVY 148
DEP TRW+F +FGRKK+ E + ++P DGSS +NG V N S V
Sbjct: 4 DEPSQTRWSFLEFKTFYDAKFGRKKLPEEDVSN-KDQP-EDGSSNGNNGDVNNNSS-PVT 60
Query: 149 EQYRTQFQGSGSTCL-NGVLANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVK 207
Q G+T L NG NVI E+ +K + P F+SAETR LAESL RDIIRG+P++K
Sbjct: 61 NQ-------DGNTALANG---NVIREKPKKSMFPPFESAETRTLAESLSRDIIRGNPNIK 110
Query: 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267
WESIKGLENAK+LLKEAVVMPIKYP YF GLL+PWKGILLFGPPGTGKTMLAKAVATEC
Sbjct: 111 WESIKGLENAKKLLKEAVVMPIKYPTYFNGLLTPWKGILLFGPPGTGKTMLAKAVATECN 170
Query: 268 TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG-EARSEHEA 326
TTFFNISASSVVSKWRGDSEKLI+VLF+LARHHAPSTIFLDEIDAIISQRG E RSEHEA
Sbjct: 171 TTFFNISASSVVSKWRGDSEKLIRVLFDLARHHAPSTIFLDEIDAIISQRGGEGRSEHEA 230
Query: 327 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 386
SRRLKTELLIQMDGL +++ELVFVLAATNLPWELDAAMLRRLEKRILVPLPD EARR MF
Sbjct: 231 SRRLKTELLIQMDGLQKTNELVFVLAATNLPWELDAAMLRRLEKRILVPLPDPEARRGMF 290
Query: 387 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDE 446
E L+PSQ G+E LP+D+LVE++EGYSGSDIR++ KEAAMQPLRR + +LE R++V P+DE
Sbjct: 291 EMLIPSQPGDEPLPHDVLVEKSEGYSGSDIRILCKEAAMQPLRRTLAILEDREDVVPEDE 350
Query: 447 LPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
LP+IGPI PED++ AL NTRPSAHLHAH Y+KFN DYGS+IL+
Sbjct: 351 LPKIGPILPEDIDRALSNTRPSAHLHAHLYDKFNDDYGSQILK 393
|
|
| UNIPROTKB|Q8IYT4 KATNAL2 "Katanin p60 ATPase-containing subunit A-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
Identities = 190/322 (59%), Positives = 240/322 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 275
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTASGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP S+ E L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARQAMIYHWLPPVSKSRALELHTELEYSV 455
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
L + TEGYSGSDI+LV +EAAM+P+R++ LE Q + D Q+ + D L
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPVRKIFDALENHQSESSDLPRIQLDIVTTADFLDVLT 515
Query: 464 NTRPSAHLHAHRYEKFNADYGS 485
+T+PSA A RY + ++ S
Sbjct: 516 HTKPSAKNLAQRYSDWQREFES 537
|
|
| UNIPROTKB|E2RK60 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 190/324 (58%), Positives = 241/324 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 213 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 272
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 273 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 332
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 333 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 392
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 393 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 452
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 461
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 453 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 510
Query: 462 LKNTRPSAHLHAHRYEKFNADYGS 485
L +T+PSA RY + +++ S
Sbjct: 511 LAHTKPSAKNLTQRYSAWQSEFES 534
|
|
| UNIPROTKB|J9P5W4 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 190/324 (58%), Positives = 241/324 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 56 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 115
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 116 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 175
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 176 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 235
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 236 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 295
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 461
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 296 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 353
Query: 462 LKNTRPSAHLHAHRYEKFNADYGS 485
L +T+PSA RY + +++ S
Sbjct: 354 LAHTKPSAKNLTQRYSAWQSEFES 377
|
|
| UNIPROTKB|E1BAN2 KATNAL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 189/324 (58%), Positives = 239/324 (73%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 212 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 271
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 272 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 331
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 332 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 391
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR AM LP+ + +L Y L
Sbjct: 392 VLAASNLPWELDCAMLRRLEKRILVDLPSQEAREAMIHHWLPAVSRSSALELRADLEYSL 451
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 461
L TEGYSGSDI+LV +EAAM+P+R++ LE Q + LP Q+ + D
Sbjct: 452 LSRETEGYSGSDIKLVCREAAMRPVRKIFNALENHQ--SGSSNLPGIQLDTVTTADFLDV 509
Query: 462 LKNTRPSAHLHAHRYEKFNADYGS 485
L +T+PSA RY + +++ S
Sbjct: 510 LAHTKPSAKSLTQRYAAWQSEFES 533
|
|
| UNIPROTKB|E1BZ64 KATNAL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
Identities = 188/322 (58%), Positives = 239/322 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL + E R LA + +DI +P+VKW+ I GL+ AKRL+KEAVV PI+
Sbjct: 144 SERLLKPLSAFIGMNGEMRELATVVSKDIYLHNPNVKWDDIIGLDAAKRLVKEAVVYPIR 203
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATEC TTFFNISAS++VSKWRGDSEKL+
Sbjct: 204 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECNTTFFNISASTIVSKWRGDSEKLV 263
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG + EHE SRR+KTELL+QMDGL +SD+LVF
Sbjct: 264 RVLFELARYHAPSTIFLDELESVMSQRGTISGGEHEGSRRMKTELLVQMDGLARSDDLVF 323
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP--SQTG----EESLPYDL 403
VLAA+NLPWELD+AMLRRLEKRILV LP+ EAR+AM LP S +G L Y L
Sbjct: 324 VLAASNLPWELDSAMLRRLEKRILVDLPNQEARQAMIRHWLPPLSNSGGVELRTDLDYSL 383
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
L T+GYSGSDI+LV KEAAM+P+R++ LE Q + + I D +
Sbjct: 384 LGRETDGYSGSDIKLVCKEAAMRPVRKVFDALENHQPGNSNLAAVHLDMITTADFLDVIA 443
Query: 464 NTRPSAHLHAHRYEKFNADYGS 485
+T+PSA + +Y + ++ S
Sbjct: 444 HTKPSAKKLSQKYTAWQREFES 465
|
|
| UNIPROTKB|J9PBP3 KATNAL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 908 (324.7 bits), Expect = 4.5e-91, P = 4.5e-91
Identities = 189/315 (60%), Positives = 236/315 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW+ I GL+ AK+L+KEAVV PI+
Sbjct: 216 SERLLKPLSAFIGMNSEMRELAAMVSRDIYLHNPNIKWDDIIGLDTAKQLVKEAVVYPIR 275
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 276 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 335
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG A EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 336 RVLFELARYHAPSTIFLDELESVMSQRGTAPGGEHEGSLRMKTELLVQMDGLARSEDLVF 395
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP----SQTGE--ESLPYDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EARRAM LP S+ E L Y +
Sbjct: 396 VLAASNLPWELDCAMLRRLEKRILVDLPSREARRAMIYHWLPPVSKSRALELRTELEYGV 455
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 461
L + TEGYSGSDI+LV +EAAM+P+R++ LE + LP Q+ + D
Sbjct: 456 LSQETEGYSGSDIKLVCREAAMRPMRKIFSALENHP--SESSNLPGIQLDTVTTADFLDV 513
Query: 462 LKNTRPSAHLHAHRY 476
L +T+PSA RY
Sbjct: 514 LAHTKPSAKNLTQRY 528
|
|
| MGI|MGI:1924234 Katnal2 "katanin p60 subunit A-like 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 907 (324.3 bits), Expect = 5.7e-91, P = 5.7e-91
Identities = 189/324 (58%), Positives = 241/324 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 217 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 276
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 277 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 336
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 337 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 396
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + +L Y +
Sbjct: 397 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELHTQLEYSV 456
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP--QIGPIRPEDVEIA 461
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + LP Q+ + +D
Sbjct: 457 LSQETEGYSGSDIKLVCREAAMRPVRKIFSVLENNQ--SESNNLPGIQLDTVTTQDFLDV 514
Query: 462 LKNTRPSAHLHAHRY----EKFNA 481
L +T+PSA RY EKF +
Sbjct: 515 LAHTKPSAKNLTERYLAWQEKFES 538
|
|
| RGD|1564708 Katnal2 "katanin p60 subunit A-like 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
Identities = 188/322 (58%), Positives = 239/322 (74%)
Query: 172 NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIK 230
+ERL KPL ++E R LA + RDI +P++KW I GL+ AK+L+KEAVV PI+
Sbjct: 200 SERLLKPLSAFIGMNSEMRELAAVVSRDIYLHNPNIKWNDIIGLDAAKQLVKEAVVYPIR 259
Query: 231 YPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLI 290
YP+ FTG+LSPWKG+LL+GPPGTGKT+LAKAVATECKTTFFNISAS++VSKWRGDSEKL+
Sbjct: 260 YPQLFTGILSPWKGLLLYGPPGTGKTLLAKAVATECKTTFFNISASTIVSKWRGDSEKLV 319
Query: 291 KVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVF 349
+VLFELAR+HAPSTIFLDE+++++SQRG EHE S R+KTELL+QMDGL +S++LVF
Sbjct: 320 RVLFELARYHAPSTIFLDELESVMSQRGMVPGGEHEGSLRMKTELLVQMDGLARSEDLVF 379
Query: 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP------YDL 403
VLAA+NLPWELD AMLRRLEKRILV LP EAR+AM LP + +L Y +
Sbjct: 380 VLAASNLPWELDCAMLRRLEKRILVDLPSQEARQAMIYHWLPPVSKNHALELRTQLEYSV 439
Query: 404 LVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
L + TEGYSGSDI+LV +EAAM+P+R++ +LE Q + + Q+ + ED L
Sbjct: 440 LSQETEGYSGSDIKLVCREAAMRPVRKIFNVLENHQSESSNLLGIQLDTVTTEDFLDVLA 499
Query: 464 NTRPSAHLHAHRY----EKFNA 481
+T+PSA RY EKF +
Sbjct: 500 HTKPSAKNLTERYLAWQEKFES 521
|
|
| ZFIN|ZDB-GENE-051113-156 katnal2 "katanin p60 subunit A-like 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 174/314 (55%), Positives = 218/314 (69%)
Query: 110 GRKKIKEPEKGEITERPVSDGSSLNSNGHVQNTSDMAVYEQ---YRTQFQGSGSTCLNGV 166
GR K + +T G LN + ++N ++ + + YR Q + N
Sbjct: 136 GRDFSKSSDGDRLTSADTL-GFGLNVSPIIRNGAEEGTHMRKIDYRNLIQDAVRGAANDT 194
Query: 167 LANVI---NERLQKPLLPNFD-SAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLK 222
L N ERL KP+ +++ + LA + RDI +P+V+W+ I GLE AKRL+K
Sbjct: 195 LHNADFTEQERLLKPVSALIGMNSDMKELAAVISRDIYLHNPNVRWDDIIGLEAAKRLVK 254
Query: 223 EAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282
EAVV PIKYP+ FTG+LSPWKG+LL+GPPGTGKTMLAKAVATEC TTFFNISASS+VSKW
Sbjct: 255 EAVVYPIKYPQLFTGILSPWKGLLLYGPPGTGKTMLAKAVATECNTTFFNISASSIVSKW 314
Query: 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGL 341
RGDSEKL++VLFELAR+HAPSTIFLDE+++++SQRG + +HE SRR+KTELL+QMDGL
Sbjct: 315 RGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGVGQGGDHEGSRRMKTELLVQMDGL 374
Query: 342 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP--SQTG---- 395
+S++LVFVLAA+NLPWELD AMLRRLEKRILV LP AR+AM LP S TG
Sbjct: 375 ARSNDLVFVLAASNLPWELDHAMLRRLEKRILVSLPSAPARQAMISHWLPPVSNTGGVEL 434
Query: 396 EESLPYDLLVERTE 409
L YD L + E
Sbjct: 435 RTELDYDSLAQVQE 448
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.3 | 0.914 |
| 3rd Layer | 3.6.4 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 489 | |||
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 9e-77 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 3e-66 | |
| COG1222 | 406 | COG1222, RPT1, ATP-dependent 26S proteasome regula | 4e-64 | |
| PRK03992 | 389 | PRK03992, PRK03992, proteasome-activating nucleoti | 4e-60 | |
| TIGR01242 | 364 | TIGR01242, 26Sp45, 26S proteasome subunit P45 fami | 7e-54 | |
| TIGR01243 | 733 | TIGR01243, CDC48, AAA family ATPase, CDC48 subfami | 5e-53 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 5e-52 | |
| PTZ00454 | 398 | PTZ00454, PTZ00454, 26S protease regulatory subuni | 3e-50 | |
| PTZ00361 | 438 | PTZ00361, PTZ00361, 26 proteosome regulatory subun | 1e-44 | |
| TIGR01241 | 495 | TIGR01241, FtsH_fam, ATP-dependent metalloprotease | 3e-43 | |
| COG1223 | 368 | COG1223, COG1223, Predicted ATPase (AAA+ superfami | 9e-39 | |
| CHL00176 | 638 | CHL00176, ftsH, cell division protein; Validated | 5e-37 | |
| COG0465 | 596 | COG0465, HflB, ATP-dependent Zn proteases [Posttra | 3e-34 | |
| PRK10733 | 644 | PRK10733, hflB, ATP-dependent metalloprotease; Rev | 4e-32 | |
| TIGR03689 | 512 | TIGR03689, pup_AAA, proteasome ATPase | 5e-30 | |
| COG0464 | 494 | COG0464, SpoVK, ATPases of the AAA+ class [Posttra | 3e-29 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 5e-23 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-15 | |
| CHL00195 | 489 | CHL00195, ycf46, Ycf46; Provisional | 1e-11 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 3e-07 | |
| pfam07724 | 168 | pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | 1e-05 | |
| COG0714 | 329 | COG0714, COG0714, MoxR-like ATPases [General funct | 3e-05 | |
| COG1224 | 450 | COG1224, TIP49, DNA helicase TIP49, TBP-interactin | 5e-05 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 8e-05 | |
| TIGR02639 | 730 | TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi | 2e-04 | |
| pfam13479 | 201 | pfam13479, AAA_24, AAA domain | 2e-04 | |
| pfam06068 | 395 | pfam06068, TIP49, TIP49 C-terminus | 2e-04 | |
| pfam01078 | 207 | pfam01078, Mg_chelatase, Magnesium chelatase, subu | 6e-04 | |
| PRK00080 | 328 | PRK00080, ruvB, Holliday junction DNA helicase Ruv | 7e-04 | |
| TIGR03922 | 557 | TIGR03922, T7SS_EccA, type VII secretion AAA-ATPas | 8e-04 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 8e-04 | |
| PRK11034 | 758 | PRK11034, clpA, ATP-dependent Clp protease ATP-bin | 0.001 | |
| COG0606 | 490 | COG0606, COG0606, Predicted ATPase with chaperone | 0.001 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 0.002 | |
| TIGR00635 | 305 | TIGR00635, ruvB, Holliday junction DNA helicase, R | 0.003 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 248 bits (635), Expect = 9e-77
Identities = 122/281 (43%), Positives = 169/281 (60%), Gaps = 30/281 (10%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
DV + I GLE AK LKEA+ P+K P+ F L L P KG+LL+GPPGTGKT+LAKAV
Sbjct: 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAV 296
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
A E ++ F ++ S ++SKW G+SEK I+ LFE AR APS IF+DEID++ S RG S
Sbjct: 297 ALESRSRFISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGP--S 354
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 380
E + RR+ +LL ++DG+ +++ V V+AATN P +LD A+LR R ++ I VPLPD E
Sbjct: 355 EDGSGRRVVGQLLTELDGIEKAEG-VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE 413
Query: 381 ARRAMFESLLPSQ--TGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
R +F+ L + E + + L E TEGYSG+DI + +EAA++ LR
Sbjct: 414 ERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE-------- 465
Query: 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 479
A E+ +D ALK +PS YE++
Sbjct: 466 ---ARRREVTL------DDFLDALKKIKPSV-----TYEEW 492
|
Length = 494 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 226 bits (577), Expect = 3e-66
Identities = 122/295 (41%), Positives = 173/295 (58%), Gaps = 6/295 (2%)
Query: 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPG 252
S R+++ P+V+W I GLE K+ L+EAV P+K+P+ F + + P KG+LLFGPPG
Sbjct: 438 SAIREVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPG 497
Query: 253 TGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312
TGKT+LAKAVATE F + ++SKW G+SEK I+ +F AR AP+ IF DEIDA
Sbjct: 498 TGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDA 557
Query: 313 IISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEK 370
I RG AR + + R+ +LL +MDG+ + +V V+AATN P LD A+LR R ++
Sbjct: 558 IAPARG-ARFDTSVTDRIVNQLLTEMDGIQELSNVV-VIAATNRPDILDPALLRPGRFDR 615
Query: 371 RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
ILVP PD EAR+ +F+ S E + + L E TEGY+G+DI V +EAAM LR
Sbjct: 616 LILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRE 675
Query: 431 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 484
+ + ++E + + ALK +PS + RYE+ +
Sbjct: 676 SIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELK 730
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 212 bits (543), Expect = 4e-64
Identities = 102/248 (41%), Positives = 148/248 (59%), Gaps = 13/248 (5%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
PDV +E I GL+ + ++E V +P+K P+ F L + P KG+LL+GPPGTGKT+LAKA
Sbjct: 145 KPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKA 204
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA + TF + S +V K+ G+ +L++ LFELAR APS IF+DEIDAI ++R ++
Sbjct: 205 VANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSG 264
Query: 322 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
+ + E R + ELL Q+DG V V+ ATN P LD A+LR R +++I PLP
Sbjct: 265 TSGDREVQRTM-LELLNQLDGFDPRGN-VKVIMATNRPDILDPALLRPGRFDRKIEFPLP 322
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437
D E R + + + + +LL TEG+SG+D++ + EA M +R E
Sbjct: 323 DEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIR------ER 376
Query: 438 RQEVAPDD 445
R EV +D
Sbjct: 377 RDEVTMED 384
|
Length = 406 |
| >gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (515), Expect = 4e-60
Identities = 104/248 (41%), Positives = 149/248 (60%), Gaps = 13/248 (5%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
SP+V +E I GLE R ++EAV +P+K P+ F + + P KG+LL+GPPGTGKT+LAKA
Sbjct: 125 SPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKA 184
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA E TF + S +V K+ G+ +L++ LFELAR APS IF+DEIDAI ++R ++
Sbjct: 185 VAHETNATFIRVVGSELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG 244
Query: 322 S--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
+ + E R L +LL +MDG V ++AATN LD A+LR R ++ I VPLP
Sbjct: 245 TSGDREVQRTL-MQLLAEMDGFDPRGN-VKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437
D E R + + + + + L E TEG SG+D++ + EA M +R +
Sbjct: 303 DEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIR------DD 356
Query: 438 RQEVAPDD 445
R EV +D
Sbjct: 357 RTEVTMED 364
|
Length = 389 |
| >gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Score = 184 bits (469), Expect = 7e-54
Identities = 102/247 (41%), Positives = 149/247 (60%), Gaps = 13/247 (5%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
P+V +E I GLE R ++EAV +P+K+P+ F + + P KG+LL+GPPGTGKT+LAKAV
Sbjct: 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAV 176
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
A E TF + S +V K+ G+ +L++ +FELA+ APS IF+DEIDAI ++R ++ +
Sbjct: 177 AHETNATFIRVVGSELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGT 236
Query: 323 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
+ E R L +LL ++DG V V+AATN P LD A+LR R ++ I VPLPD
Sbjct: 237 SGDREVQRTL-MQLLAELDGFDPRGN-VKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
E R + + E + + + + TEG SG+D++ + EA M +R E R
Sbjct: 295 FEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIR------EER 348
Query: 439 QEVAPDD 445
V DD
Sbjct: 349 DYVTMDD 355
|
Many proteins may score above the trusted cutoff because an internal. Length = 364 |
| >gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Score = 190 bits (483), Expect = 5e-53
Identities = 113/293 (38%), Positives = 171/293 (58%), Gaps = 13/293 (4%)
Query: 184 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPW 242
++ E + + +I R P V +E I GL+ AK ++E V +P+K+P+ F L + P
Sbjct: 153 EATEVEIREKPVREEIERKVPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPP 212
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 302
KG+LL+GPPGTGKT+LAKAVA E F +I+ ++SK+ G+SE+ ++ +F+ A +AP
Sbjct: 213 KGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAEENAP 272
Query: 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362
S IF+DEIDAI +R E E E +R+ +LL MDGL V V+ ATN P LD
Sbjct: 273 SIIFIDEIDAIAPKREEVTGEVE--KRVVAQLLTLMDGLKGRGR-VIVIGATNRPDALDP 329
Query: 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 420
A+ R R ++ I++ +PD AR+ + + + E + D L E T G+ G+D+ ++
Sbjct: 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALA 389
Query: 421 KEAAMQPLRRLMVLLEGR----QEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469
KEAAM LRR + EG+ E P + L ++ + +D ALK PSA
Sbjct: 390 KEAAMAALRR--FIREGKINFEAEEIPAEVLKEL-KVTMKDFMEALKMVEPSA 439
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 172 bits (437), Expect = 5e-52
Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 3/133 (2%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL+GPPGTGKT LAKAVA E F IS S +VSK+ G+SEK ++ LFE A+ AP
Sbjct: 1 LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVSKYVGESEKRLRELFEAAKKLAPCV 60
Query: 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 364
IF+DEIDA+ RG SRR+ +LL ++DG T S V V+AATN P +LD A+
Sbjct: 61 IFIDEIDALAGSRG--SGGDSESRRVVNQLLTELDGFTSSLSKVIVIAATNRPDKLDPAL 118
Query: 365 LR-RLEKRILVPL 376
LR R ++ I PL
Sbjct: 119 LRGRFDRIIEFPL 131
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (447), Expect = 3e-50
Identities = 94/232 (40%), Positives = 144/232 (62%), Gaps = 7/232 (3%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
PDV + I GL+ K+ ++EAV +P+ P+ + + + P +G+LL+GPPGTGKTMLAKAV
Sbjct: 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAV 199
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
A TF + S V K+ G+ ++++ +F LAR +APS IF+DE+D+I ++R +A++
Sbjct: 200 AHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 259
Query: 323 --EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
+ E R L ELL QMDG Q+ V V+ ATN LD A+LR RL+++I PLPD
Sbjct: 260 GADREVQRIL-LELLNQMDGFDQTTN-VKVIMATNRADTLDPALLRPGRLDRKIEFPLPD 317
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
+R +F+++ E + + V R E S +DI + +EA MQ +R+
Sbjct: 318 RRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRK 369
|
Length = 398 |
| >gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 1e-44
Identities = 91/233 (39%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
+P + I GLE + +KEAV +P+ +P+ + + + P KG++L+GPPGTGKT+LAKA
Sbjct: 177 APLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKA 236
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA E TF + S ++ K+ GD KL++ LF +A +APS +F+DEIDAI ++R +A
Sbjct: 237 VANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDAT 296
Query: 322 S--EHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
S E E R + ELL Q+DG ++ D V V+ ATN LD A++R R++++I P
Sbjct: 297 SGGEKEIQRTM-LELLNQLDGFDSRGD--VKVIMATNRIESLDPALIRPGRIDRKIEFPN 353
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429
PD + +R +FE T E + + + + SG+DI+ + EA + LR
Sbjct: 354 PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALR 406
|
Length = 438 |
| >gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Score = 159 bits (404), Expect = 3e-43
Identities = 91/254 (35%), Positives = 141/254 (55%), Gaps = 16/254 (6%)
Query: 182 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFT--GLL 239
+F ++ + L E P V ++ + G++ AK L E +V +K P FT G
Sbjct: 36 SFGKSKAKLLNE--------EKPKVTFKDVAGIDEAKEELME-IVDFLKNPSKFTKLGAK 86
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
P KG+LL GPPGTGKT+LAKAVA E FF+IS S V + G ++ LFE A+
Sbjct: 87 IP-KGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKK 145
Query: 300 HAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358
+AP IF+DEIDA+ QRG ++ + +LL++MDG + ++ V+AATN P
Sbjct: 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI-VIAATNRPD 204
Query: 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 416
LD A+LR R +++++V LPD + R + + ++ + + RT G+SG+D+
Sbjct: 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADL 264
Query: 417 RLVSKEAAMQPLRR 430
+ EAA+ R+
Sbjct: 265 ANLLNEAALLAARK 278
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495 |
| >gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 9e-39
Identities = 89/267 (33%), Positives = 134/267 (50%), Gaps = 26/267 (9%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMP-IKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 262
D+ + + G E AKR K ++M ++ P+ F G +P K +L +GPPGTGKTM+AKA+
Sbjct: 116 SDITLDDVIGQEEAKR--KCRLIMEYLENPERF-GDWAP-KNVLFYGPPGTGKTMMAKAL 171
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
A E K + A+ ++ + GD + I L+E AR AP +F+DE+DAI R
Sbjct: 172 ANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQEL 231
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 382
+ S + LL ++DG+ +++ +V + AATN P LD A+ R E+ I LP+ E R
Sbjct: 232 RGDVSEIVNA-LLTELDGIKENEGVVTI-AATNRPELLDPAIRSRFEEEIEFKLPNDEER 289
Query: 383 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQP-LRRLMVLLEGRQEV 441
+ E L +T+G SG DI KE ++ L R + E R++V
Sbjct: 290 LEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDI----KEKVLKTALHR--AIAEDREKV 343
Query: 442 APDDELPQIGPIRPEDVEIALKNTRPS 468
ED+E ALK R
Sbjct: 344 ------------EREDIEKALKKERKR 358
|
Length = 368 |
| >gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 5e-37
Identities = 86/230 (37%), Positives = 133/230 (57%), Gaps = 6/230 (2%)
Query: 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVA 263
+ + I G+E AK +E VV +K P+ FT + KG+LL GPPGTGKT+LAKA+A
Sbjct: 179 GITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIA 237
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RS 322
E + FF+IS S V + G ++ LF+ A+ ++P +F+DEIDA+ QRG
Sbjct: 238 GEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGG 297
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 380
++ + +LL +MDG + ++ V+AATN LDAA+LR R +++I V LPD E
Sbjct: 298 GNDEREQTLNQLLTEMDGFKGNKGVI-VIAATNRVDILDAALLRPGRFDRQITVSLPDRE 356
Query: 381 ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
R + + ++ + +L+ RT G+SG+D+ + EAA+ RR
Sbjct: 357 GRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARR 406
|
Length = 638 |
| >gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 3e-34
Identities = 89/228 (39%), Positives = 129/228 (56%), Gaps = 8/228 (3%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLA 259
V + + G++ AK L E +V +K PK + L P KG+LL GPPGTGKT+LA
Sbjct: 143 DQVKVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIP-KGVLLVGPPGTGKTLLA 200
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
KAVA E FF+IS S V + G ++ LFE A+ +AP IF+DEIDA+ QRG
Sbjct: 201 KAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGA 260
Query: 320 AR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
++ + +LL++MDG + E V V+AATN P LD A+LR R +++ILV L
Sbjct: 261 GLGGGNDEREQTLNQLLVEMDGFGGN-EGVIVIAATNRPDVLDPALLRPGRFDRQILVEL 319
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAA 424
PD + R + + ++ E + + T G+SG+D+ + EAA
Sbjct: 320 PDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAA 367
|
Length = 596 |
| >gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Score = 129 bits (326), Expect = 4e-32
Identities = 85/248 (34%), Positives = 135/248 (54%), Gaps = 14/248 (5%)
Query: 182 NFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSP 241
+F ++ R L E D I+ + + + G + AK + E +V ++ P F L
Sbjct: 133 SFGKSKARMLTE----DQIKTT----FADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGK 183
Query: 242 W-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 300
KG+L+ GPPGTGKT+LAKA+A E K FF IS S V + G ++ +FE A+
Sbjct: 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA 243
Query: 301 APSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359
AP IF+DEIDA+ QRG H+ + ++L++MDG + +E + V+AATN P
Sbjct: 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDV 302
Query: 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIR 417
LD A+LR R +++++V LPD R + + + + ++ T G+SG+D+
Sbjct: 303 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362
Query: 418 LVSKEAAM 425
+ EAA+
Sbjct: 363 NLVNEAAL 370
|
Length = 644 |
| >gnl|CDD|200312 TIGR03689, pup_AAA, proteasome ATPase | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 5e-30
Identities = 73/232 (31%), Positives = 120/232 (51%), Gaps = 29/232 (12%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
PDV + I GL + +++AV +P +P+ + L P KG+LL+GPPG GKT++AKAV
Sbjct: 177 PDVTYADIGGLGSQIEQIRDAVELPFLHPELYREYGLKPPKGVLLYGPPGCGKTLIAKAV 236
Query: 263 ATEC----------KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA----PSTIFLD 308
A K+ F NI +++K+ G++E+ I+++F+ AR A P +F D
Sbjct: 237 ANSLAARIGAEGGGKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASEGRPVIVFFD 296
Query: 309 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-- 366
E+D++ RG S + + +LL ++DG+ D V V+ A+N +D A+LR
Sbjct: 297 EMDSLFRTRGSGVSS-DVETTVVPQLLAEIDGVESLDN-VIVIGASNREDMIDPAILRPG 354
Query: 367 RLEKRILVPLPDTEARRAMF----------ESLLPSQTGEESLPYDLLVERT 408
RL+ +I + PD EA +F L + G+ L++R
Sbjct: 355 RLDVKIRIERPDAEAAADIFAKYLTDDLPLPEDLAAHDGDREATAAALIQRV 406
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity [Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 512 |
| >gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 3e-29
Identities = 93/243 (38%), Positives = 131/243 (53%), Gaps = 20/243 (8%)
Query: 227 MPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 285
+P+K P+ F L + P KG+LL GPPGTGKT+LA+A+A F +I+ ++SK+ G+
Sbjct: 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALA-NEGAEFLSINGPEILSKYVGE 60
Query: 286 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345
SE ++ LFE A APS IF+DEIDA+ +R + E E RR+ +LL MDGL +
Sbjct: 61 SELRLRELFEEAEKLAPSIIFIDEIDALAPKRSSDQGEVE--RRVVAQLLALMDGLKRGQ 118
Query: 346 ELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARR------AMFESLLPSQTGEE 397
+V ATN P LD A R R ++ I V LPD R L P TG+
Sbjct: 119 VIVI--GATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKT 176
Query: 398 SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457
L RT G SG+D+ ++KEAA++ LRR + L+ V DD + + P
Sbjct: 177 ------LAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKKVLPSR 230
Query: 458 VEI 460
+
Sbjct: 231 GVL 233
|
Length = 494 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 5e-23
Identities = 58/176 (32%), Positives = 82/176 (46%), Gaps = 36/176 (20%)
Query: 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KT 268
G E A L+EA+ L P K +LL+GPPGTGKT LA+A+A E
Sbjct: 1 VGQEEAIEALREAL------------ELPPPKNLLLYGPPGTGKTTLARAIANELFRPGA 48
Query: 269 TFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHE 325
F ++AS ++ L+++LFELA P +F+DEID++
Sbjct: 49 PFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL------------ 96
Query: 326 ASRRLKTELLIQMDGL---TQSDELVFVLAATNLPWELDAAM--LRRLEKRILVPL 376
SR + LL ++ L E V V+ ATN P D RL+ RI++PL
Sbjct: 97 -SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 73.6 bits (180), Expect = 1e-15
Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 26/156 (16%)
Query: 241 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS--------------SVVSKWR 283
P + IL+ GPPG+GKT LA+A+A E I K
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKAS 60
Query: 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343
G E +++ LAR P + LDEI +++ EA L +++ L +
Sbjct: 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEA--------LLLLLEELRLLLLLK 112
Query: 344 SDELVFVLAATNLP-WELDAAMLRRLEKRILVPLPD 378
S++ + V+ TN A + RR ++RI++ L
Sbjct: 113 SEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|177094 CHL00195, ycf46, Ycf46; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-11
Identities = 62/232 (26%), Positives = 107/232 (46%), Gaps = 24/232 (10%)
Query: 203 SPDVKWESIKGLENAKRLLKE-AVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 261
S + K I GL+N K LK+ + + Y GL +P +G+LL G GTGK++ AKA
Sbjct: 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQASNY--GLPTP-RGLLLVGIQGTGKSLTAKA 278
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
+A + + + + G+SE ++ + +A +P +++DEID S E++
Sbjct: 279 IANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAEALSPCILWIDEIDKAFSNS-ESK 337
Query: 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN----LPWELDAAMLR--RLEKRILVP 375
+ + R+ + L++ VFV+A N LP E +LR R ++ +
Sbjct: 338 GDSGTTNRVLATFITW---LSEKKSPVFVVATANNIDLLPLE----ILRKGRFDEIFFLD 390
Query: 376 LPDTEARRAMFESLL----PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 423
LP E R +F+ L P + L + + +SG++I EA
Sbjct: 391 LPSLEEREKIFKIHLQKFRPKSW--KKYDIKKLSKLSNKFSGAEIEQSIIEA 440
|
Length = 489 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-07
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPS- 303
++L+GPPGTGKT LA+ +A F +SA + K ++ + E AR +
Sbjct: 39 MILWGPPGTGKTTLARIIAGATDAPFEALSAVT-------SGVKDLREVIEEARQRRSAG 91
Query: 304 --TI-FLDEI 310
TI F+DEI
Sbjct: 92 RRTILFIDEI 101
|
Length = 413 |
| >gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily) | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 1e-05
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 245 ILLFGPPGTGKTMLAKAVA-----TECKTTFFNISA---SSVVSKWRGDSEKLIKV---- 292
L GP G GKT LAKA+A E ++S VS+ G +
Sbjct: 6 FLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYMEEHSVSRLIGAPPGYVGYEEGG 65
Query: 293 -LFELARHHAPSTIFLDEIDAI 313
L E R S + +DEI+
Sbjct: 66 QLTEAVRRKPYSIVLIDEIEKA 87
|
This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168 |
| >gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 45/178 (25%), Positives = 64/178 (35%), Gaps = 31/178 (17%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNIS------ASSVVSKWRGDSEKLIKVLFELAR 298
+LL GPPG GKT+LA+A+A F I S ++ + + L F
Sbjct: 46 VLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVP 105
Query: 299 ----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQSD--ELVF 349
+ LDEI+ A E + + L L + + GLT
Sbjct: 106 GPLFAAVRVILLLDEIN-------RAPPEVQNA--LLEALEERQVTVPGLTTIRLPPPFI 156
Query: 350 VLAATNLPW-----ELDAAMLRRLEKRILV--PLPDTEARRAMFESLLPSQTGEESLP 400
V+A N L A+L R RI V P + E R + + ESL
Sbjct: 157 VIATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLV 214
|
Length = 329 |
| >gnl|CDD|224145 COG1224, TIP49, DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVL 293
+GIL+ GPPGTGKT LA +A E F IS S + S +E L + L
Sbjct: 66 RGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEALTQAL 118
|
Length = 450 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 8e-05
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 247 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH---HAPS 303
L+GPPGTGKT LA+ +A F +SA + K ++ + E AR
Sbjct: 53 LWGPPGTGKTTLARLIAGTTNAAFEALSAVT-------SGVKDLREIIEEARKNRLLGRR 105
Query: 304 TI-FLDEI 310
TI FLDEI
Sbjct: 106 TILFLDEI 113
|
Length = 436 |
| >gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 246 LLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVV--SKWRGDSEKLIK-V 292
LL G PG GKT + + +A +++ +++ +K+RGD E+ +K V
Sbjct: 206 LLVGEPGVGKTAIVEGLALRIAEGKVPERLKNAKIYSLDMGTLLAGTKYRGDFEERLKAV 265
Query: 293 LFELARHHAPSTI-FLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351
+ E+ + P+ I F+DEI I+ + +AS LK L S ++ +
Sbjct: 266 VSEIEKE--PNAILFIDEIHTIVGAGATSGGSMDASNLLKPAL--------SSGKIRCIG 315
Query: 352 AAT----NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392
+ T +E D A+ RR +K I V P E + + L
Sbjct: 316 STTYEEYKNHFEKDRALSRRFQK-IDVGEPSIEETVKILKGLKEQ 359
|
[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730 |
| >gnl|CDD|222163 pfam13479, AAA_24, AAA domain | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 17/100 (17%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS------EKLIKVL 293
K +L++GPPG GKT LAK KT F ++ A + RGD+ + L L
Sbjct: 2 KNIK-VLIYGPPGIGKTSLAKT-LPP-KTLFLDLDAGTTKVLSRGDNVDIRSWQDLRDFL 58
Query: 294 FELARHHAP-STIFLDEIDAI-------ISQRGEARSEHE 325
ELA A T+ +D I + I ++ + +SE
Sbjct: 59 DELAEDLAEYDTLVIDTITKLERLCLAWIKKQNKKKSERT 98
|
This AAA domain is found in a wide variety of presumed phage proteins. Length = 201 |
| >gnl|CDD|147949 pfam06068, TIP49, TIP49 C-terminus | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVS 280
+ +L+ GPPGTGKT LA A++ E T F IS S V S
Sbjct: 51 RAVLIAGPPGTGKTALAIAISKELGEDTPFCPISGSEVYS 90
|
This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the pfam00004 domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities.TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases. Length = 395 |
| >gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 20/57 (35%)
Query: 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKG---ILLFGPPGTGKTMLAKAVAT 264
+KG E AKR L+ A G +L+ GPPG+GKTMLAK +
Sbjct: 5 VKGQEQAKRALEIAAA-----------------GGHNLLMIGPPGSGKTMLAKRLPG 44
|
Magnesium-chelatase is a three-component enzyme that catalyzes the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. Due to this, it is thought that Mg-chelatase has an important role in channelling inter- mediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weight between 38-42 kDa. Length = 207 |
| >gnl|CDD|234619 PRK00080, ruvB, Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 7e-04
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL+GPPG GKT LA +A E S + K GD L +L L
Sbjct: 54 VLLYGPPGLGKTTLANIIANEMGVNIRITSG-PALEK-PGD---LAAILTNLEEG---DV 105
Query: 305 IFLDEI 310
+F+DEI
Sbjct: 106 LFIDEI 111
|
Length = 328 |
| >gnl|CDD|188437 TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 8e-04
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 213 GLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-C-- 266
GLE KR LK + M + + + +L GPPGTGKT +A+ VA C
Sbjct: 280 GLERVKRQVAALKSSTAMALARAERGLPVAQTSNHMLFAGPPGTGKTTIARVVAKIYCGL 339
Query: 267 ----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
K +S + ++ ++ G+SE + + A +FLDE ++ +
Sbjct: 340 GVLRKPLVREVSRADLIGQYIGESEAKTNEIIDSALGGV---LFLDEAYTLVETGYGQKD 396
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLA 352
LL +M+ D LV + A
Sbjct: 397 PFGLE--AIDTLLARME--NDRDRLVVIGA 422
|
This model represents the AAA family ATPase, EccA, of the actinobacterial flavor of type VII secretion systems. Species such as Mycobacterium tuberculosis have several instances of this system per genome, designated EccA1, EccA2, etc [Protein fate, Protein and peptide secretion and trafficking]. Length = 557 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LLFGPPG GKT LA +A E S ++ GD L +L L
Sbjct: 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 106
Query: 305 IFLDEIDAI 313
+F+DEI +
Sbjct: 107 LFIDEIHRL 115
|
Length = 332 |
| >gnl|CDD|236828 PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 42/149 (28%), Positives = 66/149 (44%), Gaps = 23/149 (15%)
Query: 246 LLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSEKLIKVL 293
LL G G GKT +A+ +A +C +I + +K+RGD EK K L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 294 FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTEL---LIQMDGLTQSDELVFV 350
+ S +F+DEI II + + +A+ +K L I++ G T E
Sbjct: 271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEF--- 327
Query: 351 LAATNLPWELDAAMLRRLEK-RILVPLPD 378
+N+ +E D A+ RR +K I P +
Sbjct: 328 ---SNI-FEKDRALARRFQKIDITEPSIE 352
|
Length = 758 |
| >gnl|CDD|223679 COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 14/50 (28%)
Query: 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAK 260
+KG E AKR L+ A G +LL GPPGTGKTMLA
Sbjct: 181 VKGQEQAKRALEIAA----------AG----GHNLLLVGPPGTGKTMLAS 216
|
Length = 490 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 23/125 (18%), Positives = 42/125 (33%), Gaps = 27/125 (21%)
Query: 181 PNFDSAE-TRALAESLCRDII---RGSPDVKWE--SIKGLENAKRLLKEAVVMPIKY--- 231
F++ + + + D I V ++ S G+ +K
Sbjct: 1 EEFNAKAWVKNFRKLIDSDPIYYKPYKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTR 60
Query: 232 ----------PKYFT------GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275
K F GL+ P + ++ G PG+G + L K +A T F+I
Sbjct: 61 GFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIA--SNTDGFHIGV 118
Query: 276 SSVVS 280
V++
Sbjct: 119 EGVIT 123
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|129721 TIGR00635, ruvB, Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304
+LL+GPPG GKT LA +A E S ++ GD L +L L
Sbjct: 33 LLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP--GD---LAAILTNLEEG---DV 84
Query: 305 IFLDEIDAI 313
+F+DEI +
Sbjct: 85 LFIDEIHRL 93
|
All proteins in this family for which functions are known are 5'-3' DNA helicases that, as part of a complex with RuvA homologs serve as a 5'-3' Holliday junction helicase. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions [DNA metabolism, DNA replication, recombination, and repair]. Length = 305 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 489 | |||
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 100.0 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 100.0 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 100.0 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 100.0 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 100.0 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 100.0 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 100.0 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 100.0 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 100.0 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 100.0 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 100.0 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 100.0 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 100.0 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 100.0 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 100.0 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 100.0 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 100.0 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.98 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.98 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.97 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.97 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.97 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.96 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.96 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.9 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.89 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.89 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.88 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.88 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 99.86 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.86 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.84 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.84 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.8 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.78 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.77 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.77 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.75 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.75 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 99.74 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.74 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 99.73 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 99.73 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 99.72 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.71 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.71 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 99.71 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 99.7 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 99.7 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.69 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.69 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 99.69 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 99.69 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 99.68 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.68 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 99.67 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 99.67 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 99.66 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 99.65 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 99.65 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 99.65 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 99.65 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 99.65 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 99.65 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 99.64 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 99.64 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 99.64 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 99.64 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.63 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 99.63 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 99.63 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.63 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.62 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 99.62 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.62 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.62 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 99.62 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.62 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.62 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.61 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.61 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.6 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.6 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.6 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 99.6 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 99.59 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 99.59 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.59 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.59 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.59 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 99.58 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.58 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 99.58 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.58 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.58 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.58 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 99.57 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.57 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.57 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.57 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.56 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.56 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.56 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.55 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 99.55 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.55 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 99.54 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.54 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.54 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.53 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 99.53 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 99.52 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.51 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.49 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.49 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.48 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 99.47 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.47 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.46 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.45 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.45 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.44 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.43 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.42 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 99.41 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.4 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.39 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.38 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.38 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.38 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.37 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 99.37 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.36 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.35 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.34 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.34 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.34 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.33 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.33 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.32 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.31 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.31 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.31 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 99.3 | |
| PHA02244 | 383 | ATPase-like protein | 99.29 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.28 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 99.28 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.28 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.27 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 99.27 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.27 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.26 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.26 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.26 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.24 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 99.24 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.24 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.23 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 99.22 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.22 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.21 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 99.21 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.19 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.18 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.17 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.17 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 99.17 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 99.17 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 99.16 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 99.15 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 99.14 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.14 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.13 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.12 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.11 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 99.1 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 99.09 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 99.07 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 99.07 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 99.06 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 99.06 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.05 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.05 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 99.05 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 99.05 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.02 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 98.99 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.99 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.99 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 98.98 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 98.98 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.98 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 98.98 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.95 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.95 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.94 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 98.94 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.93 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 98.92 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 98.92 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.91 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 98.87 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 98.86 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.86 | |
| PRK08181 | 269 | transposase; Validated | 98.86 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.85 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.84 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.82 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 98.81 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 98.77 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 98.76 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.76 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 98.74 | |
| PRK06526 | 254 | transposase; Provisional | 98.72 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.69 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 98.66 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.64 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.64 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 98.64 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.63 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 98.57 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 98.57 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.55 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 98.54 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 98.54 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 98.53 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 98.52 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 98.49 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 98.47 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 98.41 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 98.4 | |
| PF05729 | 166 | NACHT: NACHT domain | 98.36 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 98.33 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 98.33 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 98.33 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.32 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.27 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 98.25 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 98.21 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 98.17 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.14 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 98.13 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 98.12 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 98.07 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 98.06 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 98.06 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.06 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 98.04 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 98.04 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 98.03 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 98.01 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 97.97 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 97.97 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.96 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 97.95 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 97.93 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 97.86 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.85 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 97.8 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 97.8 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 97.79 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 97.75 | |
| PF09336 | 62 | Vps4_C: Vps4 C terminal oligomerisation domain; In | 97.73 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 97.72 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.72 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 97.71 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.71 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.69 | |
| COG1485 | 367 | Predicted ATPase [General function prediction only | 97.67 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 97.67 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 97.67 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 97.67 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 97.66 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 97.65 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 97.63 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 97.63 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 97.62 | |
| PHA02624 | 647 | large T antigen; Provisional | 97.62 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 97.61 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 97.6 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.59 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 97.58 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 97.57 | |
| cd00983 | 325 | recA RecA is a bacterial enzyme which has roles in | 97.56 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.56 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 97.55 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 97.54 | |
| PHA02774 | 613 | E1; Provisional | 97.53 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 97.51 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 97.51 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.49 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 97.47 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.46 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 97.45 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.45 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 97.43 | |
| COG3854 | 308 | SpoIIIAA ncharacterized protein conserved in bacte | 97.43 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.42 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 97.41 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 97.4 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 97.39 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 97.38 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.35 | |
| PRK03839 | 180 | putative kinase; Provisional | 97.35 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 97.34 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 97.33 | |
| KOG2383 | 467 | consensus Predicted ATPase [General function predi | 97.33 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 97.32 | |
| PRK00625 | 173 | shikimate kinase; Provisional | 97.3 | |
| PRK04328 | 249 | hypothetical protein; Provisional | 97.3 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 97.3 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.29 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 97.27 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 97.26 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 97.25 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 97.25 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 97.25 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 97.23 | |
| PRK13695 | 174 | putative NTPase; Provisional | 97.23 | |
| PRK09354 | 349 | recA recombinase A; Provisional | 97.23 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 97.23 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.22 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 97.21 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.21 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 97.21 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 97.21 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.21 | |
| TIGR03880 | 224 | KaiC_arch_3 KaiC domain protein, AF_0351 family. T | 97.21 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 97.2 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 97.2 | |
| PRK13949 | 169 | shikimate kinase; Provisional | 97.18 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 97.17 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.17 | |
| PRK06217 | 183 | hypothetical protein; Validated | 97.17 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 97.15 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.14 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 97.14 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.13 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 97.12 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.12 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 97.11 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 97.09 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 97.09 | |
| PRK13948 | 182 | shikimate kinase; Provisional | 97.08 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 97.08 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 97.08 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 97.08 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 97.08 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.06 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 97.06 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 97.05 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 97.04 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 97.04 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 97.04 | |
| COG2874 | 235 | FlaH Predicted ATPases involved in biogenesis of a | 97.04 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 97.02 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 97.02 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 97.01 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 97.01 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 97.01 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.0 | |
| COG0703 | 172 | AroK Shikimate kinase [Amino acid transport and me | 97.0 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 96.99 | |
| PRK03731 | 171 | aroL shikimate kinase II; Reviewed | 96.98 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.98 | |
| PLN02674 | 244 | adenylate kinase | 96.98 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 96.98 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 96.98 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 96.97 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 96.97 | |
| cd02027 | 149 | APSK Adenosine 5'-phosphosulfate kinase (APSK) cat | 96.97 | |
| PTZ00088 | 229 | adenylate kinase 1; Provisional | 96.97 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 96.96 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 96.96 | |
| PRK08154 | 309 | anaerobic benzoate catabolism transcriptional regu | 96.96 | |
| PRK13946 | 184 | shikimate kinase; Provisional | 96.96 | |
| PRK05057 | 172 | aroK shikimate kinase I; Reviewed | 96.96 | |
| PF08433 | 270 | KTI12: Chromatin associated protein KTI12 ; InterP | 96.94 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 96.94 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 96.94 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.93 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 96.92 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 96.91 | |
| PRK13764 | 602 | ATPase; Provisional | 96.9 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 96.9 | |
| COG1066 | 456 | Sms Predicted ATP-dependent serine protease [Postt | 96.9 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 96.88 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 96.88 | |
| PRK06696 | 223 | uridine kinase; Validated | 96.88 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 96.87 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 96.87 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 96.86 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 96.84 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 96.84 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 96.83 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 96.83 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 96.83 | |
| PLN02200 | 234 | adenylate kinase family protein | 96.82 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 96.82 | |
| PTZ00035 | 337 | Rad51 protein; Provisional | 96.81 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 96.81 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 96.8 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.79 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 96.79 | |
| TIGR02239 | 316 | recomb_RAD51 DNA repair protein RAD51. This eukary | 96.78 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 96.78 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 96.77 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 96.76 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 96.76 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 96.76 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 96.75 | |
| PF08303 | 168 | tRNA_lig_kinase: tRNA ligase kinase domain; InterP | 96.75 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 96.75 | |
| PF13479 | 213 | AAA_24: AAA domain | 96.75 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 96.74 | |
| PF06414 | 199 | Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e | 96.74 | |
| PRK14526 | 211 | adenylate kinase; Provisional | 96.73 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 96.72 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 96.71 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 96.71 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 96.71 | |
| cd02019 | 69 | NK Nucleoside/nucleotide kinase (NK) is a protein | 96.71 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.71 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 96.71 | |
| PF00625 | 183 | Guanylate_kin: Guanylate kinase; InterPro: IPR0081 | 96.7 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 96.69 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 96.69 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.68 | |
| PF13481 | 193 | AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C. | 96.68 | |
| COG0324 | 308 | MiaA tRNA delta(2)-isopentenylpyrophosphate transf | 96.67 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 96.67 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 96.66 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 96.66 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 96.65 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 96.64 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 96.64 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 96.64 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 96.63 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 96.63 | |
| PRK04182 | 180 | cytidylate kinase; Provisional | 96.62 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 96.62 | |
| PRK01184 | 184 | hypothetical protein; Provisional | 96.6 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.58 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 96.58 | |
| PF01580 | 205 | FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00 | 96.57 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 96.57 | |
| PF01583 | 156 | APS_kinase: Adenylylsulphate kinase; InterPro: IPR | 96.56 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 96.55 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 96.55 | |
| TIGR02173 | 171 | cyt_kin_arch cytidylate kinase, putative. Proteins | 96.54 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 96.54 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 96.54 | |
| PRK09519 | 790 | recA DNA recombination protein RecA; Reviewed | 96.53 | |
| TIGR01526 | 325 | nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr | 96.53 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 96.52 | |
| PLN02459 | 261 | probable adenylate kinase | 96.51 | |
| PF13521 | 163 | AAA_28: AAA domain; PDB: 1LW7_A. | 96.51 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 96.51 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 96.5 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 96.5 | |
| PRK10263 | 1355 | DNA translocase FtsK; Provisional | 96.5 | |
| PRK08099 | 399 | bifunctional DNA-binding transcriptional repressor | 96.46 | |
| COG0529 | 197 | CysC Adenylylsulfate kinase and related kinases [I | 96.44 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 96.43 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 96.42 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 96.42 | |
| COG5245 | 3164 | DYN1 Dynein, heavy chain [Cytoskeleton] | 96.42 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 96.41 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 96.4 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 96.4 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 96.38 | |
| PRK09302 | 509 | circadian clock protein KaiC; Reviewed | 96.37 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 96.37 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 96.34 | |
| PF08423 | 256 | Rad51: Rad51; InterPro: IPR013632 This domain is f | 96.34 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.33 | |
| COG0467 | 260 | RAD55 RecA-superfamily ATPases implicated in signa | 96.33 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 96.29 | |
| TIGR00174 | 287 | miaA tRNA isopentenyltransferase (miaA). Catalyzes | 96.28 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 96.27 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 96.26 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 96.24 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 96.23 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.23 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 96.23 |
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-57 Score=447.35 Aligned_cols=306 Identities=54% Similarity=0.884 Sum_probs=285.0
Q ss_pred CCCCCchHHHH-HHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHH
Q 011305 179 LLPNFDSAETR-ALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTM 257 (489)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~ 257 (489)
..+.|...+.. .+++.+.+++....|+++|+||.|++++|+.|+|+|..|+..|++|.+...|+++||++||||||||+
T Consensus 181 ~~~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTl 260 (491)
T KOG0738|consen 181 EDKKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTL 260 (491)
T ss_pred ccCCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHH
Confidence 34566666555 78889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 258 LAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 258 lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
||+|+|.+++..|+.|+.+.+.++|.|++++.++-+|+.|+.++|++|||||||+|...|+.. .+|+.++++.++||.+
T Consensus 261 LAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQ 339 (491)
T KOG0738|consen 261 LAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQ 339 (491)
T ss_pred HHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998764 7899999999999999
Q ss_pred hcCCccCCCc---EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHH
Q 011305 338 MDGLTQSDEL---VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 414 (489)
Q Consensus 338 ldg~~~~~~~---viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~ 414 (489)
|||+...... |+|+++||.||.+|+|++|||.+.|++|+|+.+.|..+++..++......+++++.|++.++||||+
T Consensus 340 mDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGa 419 (491)
T KOG0738|consen 340 MDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGA 419 (491)
T ss_pred hhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChH
Confidence 9999776665 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-hhHHHHHHHHHHhchh
Q 011305 415 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 486 (489)
Q Consensus 415 Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-~~~~~y~~~~~~~g~~ 486 (489)
||..+|++|++.++||.++.+..+.......+... .|++++||+.|+++++||++ .++.+|++|.+.|||.
T Consensus 420 DI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~-~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS~ 491 (491)
T KOG0738|consen 420 DITNVCREASMMAMRRKIAGLTPREIRQLAKEEPK-MPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGSC 491 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccc-cccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999998887766655554444445 68999999999999999998 6899999999999984
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=417.72 Aligned_cols=270 Identities=43% Similarity=0.666 Sum_probs=252.2
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+...+.|+++|+||+|++++|++|++.+.+|+++|+.|.++ ..|++|||||||||||||++||++|++.+.+|+.
T Consensus 419 sa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFls 498 (693)
T KOG0730|consen 419 SALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLS 498 (693)
T ss_pred hhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeee
Confidence 455777888999999999999999999999999999999999997 6999999999999999999999999999999999
Q ss_pred EeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 011305 273 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (489)
Q Consensus 273 v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIa 352 (489)
|++.++.++|+|++++.++.+|++|+..+|||||+||||++...|++. .+.+..+++++||++|||+... .+|+||+
T Consensus 499 vkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~--~~~v~~RVlsqLLtEmDG~e~~-k~V~ViA 575 (693)
T KOG0730|consen 499 VKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS--SSGVTDRVLSQLLTEMDGLEAL-KNVLVIA 575 (693)
T ss_pred ccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC--ccchHHHHHHHHHHHccccccc-CcEEEEe
Confidence 999999999999999999999999999999999999999999999743 3378899999999999999755 4599999
Q ss_pred EeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011305 353 ATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 353 tTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR 430 (489)
+||+|+.+|+|++| ||+..|++|+||.+.|.+||+.++++.+...++|+++||+.|+||||+||..+|++|+..++++
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRE 655 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHH
Q 011305 431 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 482 (489)
Q Consensus 431 ~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~ 482 (489)
... ...|+.+||++|++..+||.+. +++.|++|.+.
T Consensus 656 ~i~----------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 656 SIE----------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred hcc----------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 554 1239999999999999999886 58999998764
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-49 Score=372.97 Aligned_cols=300 Identities=30% Similarity=0.424 Sum_probs=257.7
Q ss_pred ccCcchHHHHHHHHhhhcCCccccCchhHHHhhhhhcCCCCCCCchHH-------------HHHHHHHhhhhh-hcCCCC
Q 011305 140 QNTSDMAVYEQYRTQFQGSGSTCLNGVLANVINERLQKPLLPNFDSAE-------------TRALAESLCRDI-IRGSPD 205 (489)
Q Consensus 140 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-~~~~~~ 205 (489)
.-..++.+|+.|++.||.+..+..++++| + +.++|+|.+-- +..+..+-.++. ....++
T Consensus 45 vv~dn~~~F~~YArdQW~Ge~v~eg~ylF---D----~~~~pdyAfkvI~~~P~~~~i~~st~i~vl~~~~~~~~e~~~~ 117 (368)
T COG1223 45 VVDDNPEVFNIYARDQWLGEVVREGDYLF---D----TRMFPDYAFKVIRVVPSGGGIITSTTIFVLETPREEDREIISD 117 (368)
T ss_pred eecCCHHHHHHHHHHhhcceeeecCceEe---e----cccccccceeEEEEeCCCCceecceEEEEecCcchhhhhhhcc
Confidence 44559999999999999999999998887 4 56778877621 111111111222 224578
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccc
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGD 285 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~ 285 (489)
++|+|++|++++|++++- +..++.+|+.|..|. |++||||||||||||++|+++|++.+.|++.+++.++.++++|+
T Consensus 118 it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGd 194 (368)
T COG1223 118 ITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGD 194 (368)
T ss_pred ccHhhhhchHHHHHHHHH-HHHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhh
Confidence 899999999999999985 445688999998764 48999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHH
Q 011305 286 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML 365 (489)
Q Consensus 286 ~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~ 365 (489)
..+.++.+++.|+..+|||+||||+|+++.+|..+...++++ +++++||++|||+. .+.+|+.|++||+|+.||++++
T Consensus 195 gar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVs-EiVNALLTelDgi~-eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 195 GARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVS-EIVNALLTELDGIK-ENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred HHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHH-HHHHHHHHhccCcc-cCCceEEEeecCChhhcCHHHH
Confidence 999999999999999999999999999999998877776665 48899999999997 5566999999999999999999
Q ss_pred hhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH-HHHHHHhHHHHHHHHHhhhhhccCCC
Q 011305 366 RRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL-VSKEAAMQPLRRLMVLLEGRQEVAPD 444 (489)
Q Consensus 366 rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~-l~~~A~~~a~rR~~~~le~~~~~~~~ 444 (489)
+||...|+|.+|+.++|..|++.++++.++..+.+++.+++.|.|+||+||.. +++.|.+.|+.. ++.
T Consensus 273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~e------d~e----- 341 (368)
T COG1223 273 SRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAE------DRE----- 341 (368)
T ss_pred hhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHh------chh-----
Confidence 99999999999999999999999999999999999999999999999999987 777777776553 222
Q ss_pred CCCCCCCCCCHHHHHHHHhhhCCCh
Q 011305 445 DELPQIGPIRPEDVEIALKNTRPSA 469 (489)
Q Consensus 445 ~~~~~~~~It~eDf~~AL~~~~ps~ 469 (489)
.|+.+||+.|+++.++.-
T Consensus 342 -------~v~~edie~al~k~r~~r 359 (368)
T COG1223 342 -------KVEREDIEKALKKERKRR 359 (368)
T ss_pred -------hhhHHHHHHHHHhhcccc
Confidence 389999999999877653
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-48 Score=385.22 Aligned_cols=249 Identities=41% Similarity=0.657 Sum_probs=229.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|+++++||+|+++.+++++|.+..|+.+|++|... ..||+|||||||||||||+||||+|++.+..|+.|.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 456799999999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+|+|+..+.++.+|..|+.++||||||||||+++.+|.+.. +.....++..-+||++|||+...+ +|-||+|||++
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ATNR~ 300 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIMATNRP 300 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEEecCCc
Confidence 9999999999999999999999999999999999999986432 222334567789999999997654 58899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.|||||+| ||++.|+||+||.+.|.+||+.|.+++....++|++.||+.++|+||+||+++|.+|.+.|+|.-
T Consensus 301 D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~---- 376 (406)
T COG1222 301 DILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRER---- 376 (406)
T ss_pred cccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc----
Confidence 999999999 99999999999999999999999999999999999999999999999999999999999999852
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+ ..+|++||.+|..++..
T Consensus 377 --R------------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 --R------------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred --c------------CeecHHHHHHHHHHHHh
Confidence 1 13999999999988754
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=403.52 Aligned_cols=286 Identities=33% Similarity=0.590 Sum_probs=256.6
Q ss_pred HHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 192 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
..+..|+.....|+++|+||+|+++++.+|..++.+|.++|+.|..+ ...|.|||||||||||||.+|+|+|++.+.+|
T Consensus 494 QPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 494 QPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 33456777778899999999999999999999999999999999987 77889999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+.|.+.+|.++|+|++++.++.+|..|+..+|||||+||+|+|.+.|+... ...+.+++++||.+|||+..+.+ |.|
T Consensus 574 isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~~R~g-V~v 650 (802)
T KOG0733|consen 574 ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLEERRG-VYV 650 (802)
T ss_pred EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccccccc-eEE
Confidence 999999999999999999999999999999999999999999999998654 56678999999999999976554 999
Q ss_pred EEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcC--CCCCCCCCCHHHHHHHhc--CCcHHHHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP--SQTGEESLPYDLLVERTE--GYSGSDIRLVSKEAA 424 (489)
Q Consensus 351 IatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~--~~~~~~~~dl~~La~~t~--G~sg~Di~~l~~~A~ 424 (489)
|++||+|+.+|+|++| ||++.+++++|+.++|..||+.+.+ +.++..++|++.||+.+. ||||+||..||++|+
T Consensus 651 iaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAs 730 (802)
T KOG0733|consen 651 IAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREAS 730 (802)
T ss_pred EeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999999 667788999999999876 999999999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCC---CCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhch
Q 011305 425 MQPLRRLMVLLEGRQEVAPDDELPQ---IGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 485 (489)
Q Consensus 425 ~~a~rR~~~~le~~~~~~~~~~~~~---~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~ 485 (489)
..++++.+...+.... +... ...+|..||++|+++++||+++ +...|+..++.||.
T Consensus 731 i~AL~~~~~~~~~~~~-----~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~L 790 (802)
T KOG0733|consen 731 ILALRESLFEIDSSED-----DVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRSL 790 (802)
T ss_pred HHHHHHHHhhccccCc-----ccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhcc
Confidence 9999987763332211 1111 1138899999999999999986 67999999999984
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=375.28 Aligned_cols=298 Identities=49% Similarity=0.841 Sum_probs=267.0
Q ss_pred HHHHHHHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 186 AETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+..++...++..++.+.|+++|+|+.|++.+|+.|++.+..|.+.|++|.+...|++++||||||||||+.||+|+|.+
T Consensus 110 pe~kKLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 110 PEKKKLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATE 189 (439)
T ss_pred hhHHHHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhh
Confidence 34566777788889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 266 CKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 266 l~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
.+..|+.|+.++|+++|.|++++.++.+|+.|+.++|+||||||||++++.|+.. +.+.++++..+||.+|+|+-..+
T Consensus 190 AnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 190 ANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred cCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhccccCC
Confidence 9999999999999999999999999999999999999999999999999988754 56778999999999999998888
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
+.|+|+++||-||.||.+++|||++.|++|+|+...|..+++.++...+.. .+.|+..|+++|+||||+||.-+++.|.
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDal 347 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDAL 347 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhh
Confidence 999999999999999999999999999999999999999999999887765 4668999999999999999999999999
Q ss_pred hHHHHHHHHHhh-----h-------hhcc---C--------------CCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHH
Q 011305 425 MQPLRRLMVLLE-----G-------RQEV---A--------------PDDELPQIGPIRPEDVEIALKNTRPSAHL-HAH 474 (489)
Q Consensus 425 ~~a~rR~~~~le-----~-------~~~~---~--------------~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~ 474 (489)
+.++|+...... + .... . +.+.+ -..+||+.||.++|++.+|.+.. ++.
T Consensus 348 mePvRkvqsAthFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl-~eP~vt~~D~~k~l~~tkPTvn~~Dl~ 426 (439)
T KOG0739|consen 348 MEPVRKVQSATHFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKL-LEPPVTMRDFLKSLSRTKPTVNEDDLL 426 (439)
T ss_pred hhhHHHhhhhhhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhc-cCCCccHHHHHHHHhhcCCCCCHHHHH
Confidence 999998643211 0 0000 0 11111 13469999999999999999875 699
Q ss_pred HHHHHHHHhchh
Q 011305 475 RYEKFNADYGSE 486 (489)
Q Consensus 475 ~y~~~~~~~g~~ 486 (489)
+.++|+++||+|
T Consensus 427 k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 427 KHEKFTEDFGQE 438 (439)
T ss_pred HHHHHHHhhccC
Confidence 999999999986
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-47 Score=404.14 Aligned_cols=284 Identities=32% Similarity=0.552 Sum_probs=259.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
..+.|+++|+||+|++++|..+.+.+..|++||++|...+.+..|||||||||||||.+|||+|.++...|+.|.+.++.
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 34679999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~viVIatTn~p~ 358 (489)
+.|+|+++++++++|++|+..+|||||+||+|+++++|+..+..+.+..+++++||.+|||++. ....|+||++||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 9999999999999999999999999999999999999998888899999999999999999976 667899999999999
Q ss_pred cccHHHHh--hcccccccCCC-CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhc-CCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 359 ELDAAMLR--RLEKRILVPLP-DTEARRAMFESLLPSQTGEESLPYDLLVERTE-GYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~-G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
.||++++| ||++.+++..+ |.+.+..+|+...++..++.++|+.++|+.+. .|||+|+..+|..|++.|++|....
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~~ 902 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIHD 902 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999998 66779999999999999999999999999985 8999999999999999999998876
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhc
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 484 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g 484 (489)
.+....-..+.+ +...-|++|||.+++++.+||.+. +++.|+.....|.
T Consensus 903 ie~g~~~~~e~~-~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 903 IESGTISEEEQE-SSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred hhhccccccccC-CceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 664422112222 222349999999999999999875 7999999888774
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=353.29 Aligned_cols=285 Identities=40% Similarity=0.686 Sum_probs=253.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
+....-.++|+||.|++.+++++++.+..|+++|++|... +.|++||||+||||||||++|+++|++.+.+|+.|+.+
T Consensus 82 v~p~~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s 161 (386)
T KOG0737|consen 82 VPPSEIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS 161 (386)
T ss_pred cchhhceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeecc
Confidence 3334456889999999999999999999999999999653 88999999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC-CcEEEEEEeC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-ELVFVLAATN 355 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~-~~viVIatTn 355 (489)
.+.++|.|+.++.++.+|..|...+|+||||||+|++...| ...+|+..+.+.++|...+||+.... ..|+|+++||
T Consensus 162 ~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R--~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 162 NLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR--RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred ccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc--ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999999998 36789999999999999999996554 4799999999
Q ss_pred CCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 356 LPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 356 ~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+|..+|+|++||+...+++++|+..+|.+||+-+++....+.++|+..+|+.|+||||+||.++|..|++.++|..+..-
T Consensus 240 RP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~ 319 (386)
T KOG0737|consen 240 RPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSE 319 (386)
T ss_pred CCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred ---hhhhc-cCCCCCCC------CCCCCCHHHHHHHHhhhCCChhh---hHHHHHHHHHHhch
Q 011305 436 ---EGRQE-VAPDDELP------QIGPIRPEDVEIALKNTRPSAHL---HAHRYEKFNADYGS 485 (489)
Q Consensus 436 ---e~~~~-~~~~~~~~------~~~~It~eDf~~AL~~~~ps~~~---~~~~y~~~~~~~g~ 485 (489)
.+... ..+....+ ..++++++||.++++++-+|... .....+.|++.||.
T Consensus 320 ~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 320 TGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred ccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 11111 11111111 16899999999999999988553 36889999999986
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-44 Score=372.18 Aligned_cols=283 Identities=35% Similarity=0.531 Sum_probs=248.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.++++|++|+|++....+|.+++.. +.+|+.|..+ +.|++|||||||||||||+||+++|.++++||+.|++.++++.
T Consensus 184 ~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSG 262 (802)
T KOG0733|consen 184 ESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSG 262 (802)
T ss_pred CCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcc
Confidence 4578999999999999999998877 9999998876 8999999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC---CCcEEEEEEeCCCC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS---DELVFVLAATNLPW 358 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~---~~~viVIatTn~p~ 358 (489)
+.|+++++++.+|+.|....|||+||||||++.++|... ..+-.++++.+||+.||++... +..|+||++||+|+
T Consensus 263 vSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~a--qreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPD 340 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEA--QREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPD 340 (802)
T ss_pred cCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhH--HHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCc
Confidence 999999999999999999999999999999999999864 3455689999999999999654 56799999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.||++|+| ||++.|.+..|+..+|.+||+..++...+..++|+..||+.|.||.|+|+..||.+|+..+++|.+...+
T Consensus 341 slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 341 SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 99999999 9999999999999999999999999999999999999999999999999999999999999999877433
Q ss_pred hhhccC-----------------------------------------CCC---CCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 437 GRQEVA-----------------------------------------PDD---ELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 437 ~~~~~~-----------------------------------------~~~---~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
.-.... ++. +....-.|+.+||..|+..+|||+..+
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 100000 000 001122489999999999999999876
Q ss_pred ---HHHHHHHHHHhchhhc
Q 011305 473 ---AHRYEKFNADYGSEIL 488 (489)
Q Consensus 473 ---~~~y~~~~~~~g~~~~ 488 (489)
-..-+.|.+..+.+.+
T Consensus 501 GF~tVPdVtW~dIGaL~~v 519 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGALEEV 519 (802)
T ss_pred cceecCCCChhhcccHHHH
Confidence 3667788888887643
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=345.80 Aligned_cols=240 Identities=35% Similarity=0.569 Sum_probs=219.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
.+++|+|+.|++++|++|+|++ .+++.|+.|.++ ..-|+||||.||||||||+||||+|.+.++||++.+++++...+
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 4788999999999999999955 568899999987 77889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
+|..++.++.+|..|+..+||||||||||++.++|...... ..++.+++||.+|||+.. +.+|+||++||.|+.||+
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~q-NeGiIvigATNfpe~LD~ 454 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFKQ-NEGIIVIGATNFPEALDK 454 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcCc-CCceEEEeccCChhhhhH
Confidence 99999999999999999999999999999999998765432 678999999999999975 456999999999999999
Q ss_pred HHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 363 al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
||.| ||+++|.+|.||...|.+||+.|+.+.....++|++-||+-|.||+|+||.++++.|+..|+.. +.
T Consensus 455 AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d------ga-- 526 (752)
T KOG0734|consen 455 ALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD------GA-- 526 (752)
T ss_pred HhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc------Cc--
Confidence 9999 9999999999999999999999999999999999999999999999999999999999876542 11
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..+++.|++-|-.++
T Consensus 527 ----------~~VtM~~LE~akDrI 541 (752)
T KOG0734|consen 527 ----------EMVTMKHLEFAKDRI 541 (752)
T ss_pred ----------ccccHHHHhhhhhhe
Confidence 138999998887665
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=367.92 Aligned_cols=287 Identities=41% Similarity=0.655 Sum_probs=249.3
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++.....|.++|++|+|++.+|+.|++.+.+++.+++.+... ..+++++|||||||||||++|+++|++++.+|+.+++
T Consensus 441 ~~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 441 REVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred chhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 344455688999999999999999999999999999998875 6788999999999999999999999999999999999
Q ss_pred cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
+++.++|+|++++.++.+|..|+...|+||||||+|.+++.++... .....++++++|+..|+++... .+++||+|||
T Consensus 521 ~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~-~~~~~~~~~~~lL~~ldg~~~~-~~v~vI~aTn 598 (733)
T TIGR01243 521 PEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARF-DTSVTDRIVNQLLTEMDGIQEL-SNVVVIAATN 598 (733)
T ss_pred HHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCC-CccHHHHHHHHHHHHhhcccCC-CCEEEEEeCC
Confidence 9999999999999999999999999999999999999998876432 2345678999999999998654 4589999999
Q ss_pred CCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 356 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 356 ~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
+|+.+|++++| ||+..+++|+|+.++|.+||+.+.++.+...+.+++.+|+.|+||||+||..+|++|+..++++...
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999998 9999999999999999999999999888888899999999999999999999999999999998654
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhch
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGS 485 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~ 485 (489)
..................+|+++||.+|+++++||.++ ++..|++|.+.||.
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 32211000000001122469999999999999999886 57999999999973
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=343.48 Aligned_cols=289 Identities=51% Similarity=0.803 Sum_probs=258.7
Q ss_pred HHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 192 AESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
...+.+++....+++.|+|+.|++.+|+.+.+.+.+|..+++.|.+...+.+++||.||||+|||+|+++||.|++..|+
T Consensus 136 ~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff 215 (428)
T KOG0740|consen 136 IEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFF 215 (428)
T ss_pred hHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEe
Confidence 44566788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEE
Q 011305 272 NISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFV 350 (489)
Q Consensus 272 ~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~viV 350 (489)
.++++.+.++|+|+.++.++.+|..|+..+|+|+||||+|.++.+|. ..+++.++++..+++..+++... .+++|+|
T Consensus 216 ~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs--~~e~e~srr~ktefLiq~~~~~s~~~drvlv 293 (428)
T KOG0740|consen 216 NISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRS--DNEHESSRRLKTEFLLQFDGKNSAPDDRVLV 293 (428)
T ss_pred eccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcC--CcccccchhhhhHHHhhhccccCCCCCeEEE
Confidence 99999999999999999999999999999999999999999999984 45677788999999999998854 4568999
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
|+|||.|+.+|.+++|||..++++|+|+.+.|..+|+.++.+.+.. .+.+++.+++.|+||+++||..+|++|++...+
T Consensus 294 igaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r 373 (428)
T KOG0740|consen 294 IGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLR 373 (428)
T ss_pred EecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchh
Confidence 9999999999999999999999999999999999999999888443 457899999999999999999999999999988
Q ss_pred HHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchhh
Q 011305 430 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 487 (489)
Q Consensus 430 R~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~~ 487 (489)
..... .....+ .....++++..||+.+++.++|+.+. .++.|.+|.+.||+..
T Consensus 374 ~~~~~-~~~~~~----~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~~~ 427 (428)
T KOG0740|consen 374 ELGGT-TDLEFI----DADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGSSE 427 (428)
T ss_pred hcccc-hhhhhc----chhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcccc
Confidence 75542 011111 12334789999999999999999886 5899999999999863
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=335.62 Aligned_cols=257 Identities=46% Similarity=0.725 Sum_probs=234.0
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcc-cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
++....+.++|++++|++.+|+.+++.+.+++.+++.|.. ...+++++|||||||||||++|+++|++++.+|+.++.+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4555678999999999999999999999999999999887 467888999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
++.++|+|+++++++.+|..|+..+||||||||+|++++.++.... ....+++++++.+|+++....+ |+||++||+
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~--~~~~r~~~~lL~~~d~~e~~~~-v~vi~aTN~ 387 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED--GSGRRVVGQLLTELDGIEKAEG-VLVIAATNR 387 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc--hHHHHHHHHHHHHhcCCCccCc-eEEEecCCC
Confidence 9999999999999999999999999999999999999999875432 2236899999999999976554 889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCC--CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTG--EESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~--~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
|+.+|++++| ||+..+++|+||.++|.+|++.++..... ..+.++..+++.|+||+|+||..+|++|++.+.++..
T Consensus 388 p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~ 467 (494)
T COG0464 388 PDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR 467 (494)
T ss_pred ccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999 99999999999999999999999986554 4678999999999999999999999999999988754
Q ss_pred HHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhHHHHHHH
Q 011305 433 VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKF 479 (489)
Q Consensus 433 ~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~~~y~~~ 479 (489)
...+|.+||..|+++.+||+. |++|
T Consensus 468 -----------------~~~~~~~~~~~a~~~~~p~~~-----~~~~ 492 (494)
T COG0464 468 -----------------RREVTLDDFLDALKKIKPSVT-----YEEW 492 (494)
T ss_pred -----------------cCCccHHHHHHHHHhcCCCCC-----hhhc
Confidence 134999999999999999987 8888
|
|
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=294.40 Aligned_cols=254 Identities=37% Similarity=0.583 Sum_probs=229.0
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+-.++++.|+.+++-+.|++...+++++.+..|.++|++|..+ .+.|+|+|||||||||||.+|+++|....+.|+.|+
T Consensus 134 sLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvs 213 (404)
T KOG0728|consen 134 SLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVS 213 (404)
T ss_pred HHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEec
Confidence 3446678899999999999999999999999999999999987 788899999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+++++.+|.|+..+.++++|-.|+..+|+|||+||||++...|.+++.. ....++..-+||+++||+.... ++-||.+
T Consensus 214 gselvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk-nikvima 292 (404)
T KOG0728|consen 214 GSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK-NIKVIMA 292 (404)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc-ceEEEEe
Confidence 9999999999999999999999999999999999999999987643322 2233456678899999997544 4889999
Q ss_pred eCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 354 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 354 Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
||+.+-||++++| |+++.|+||+|+.+.|.+||+.+.++.++...+++..+|+...|.||+++..+|.+|.+.++|.-
T Consensus 293 tnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 293 TNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred ccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999998841
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
+ ..+|.|||+-|+.++-.-
T Consensus 373 ------r------------vhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 373 ------R------------VHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ------h------------ccccHHHHHHHHHHHHhc
Confidence 1 139999999999877543
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=335.57 Aligned_cols=246 Identities=38% Similarity=0.595 Sum_probs=221.7
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
....++|+|+.|++++|++|.|++ .++++|+.|..+ ...|+|+||+||||||||+||+|+|.|.++||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 345589999999999999999965 568899998887 788899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc--cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE--ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~--~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.++|.....++.+|..|+.++|||+||||||++...|+. ....+...+..+++||.+|||+... ..|+|+++||+|+
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi~~a~tnr~d 461 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVIVLAATNRPD 461 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEEEEeccCCcc
Confidence 999999999999999999999999999999999999852 2234445577899999999999766 6699999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
.||+|++| ||++.++++.|+...|.+|++.|++..... .+.++..+|.+|.||+|+||.++|++|+..++|+..
T Consensus 462 ~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~--- 538 (774)
T KOG0731|consen 462 ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL--- 538 (774)
T ss_pred ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc---
Confidence 99999999 999999999999999999999999998885 667888899999999999999999999999988622
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
..|+.+||+.|++++.-
T Consensus 539 ---------------~~i~~~~~~~a~~Rvi~ 555 (774)
T KOG0731|consen 539 ---------------REIGTKDLEYAIERVIA 555 (774)
T ss_pred ---------------CccchhhHHHHHHHHhc
Confidence 24999999999995543
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-37 Score=325.46 Aligned_cols=236 Identities=35% Similarity=0.624 Sum_probs=218.2
Q ss_pred hhhhc-CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 197 RDIIR-GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 197 ~~~~~-~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
|.+.. ......|+||.|+.++|+.|.+.+.+|.+||..|... ++.+.|||||||||||||.||-++|..++..|+.|.
T Consensus 654 R~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK 733 (952)
T KOG0735|consen 654 RGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK 733 (952)
T ss_pred hhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec
Confidence 44433 3345899999999999999999999999999999875 777789999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.++.++|.|.++..++.+|..|+..+|||||+||+|+++++|+. .......+++++||++|||... -.+|.|+++|
T Consensus 734 GPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGh--DsTGVTDRVVNQlLTelDG~Eg-l~GV~i~aaT 810 (952)
T KOG0735|consen 734 GPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGH--DSTGVTDRVVNQLLTELDGAEG-LDGVYILAAT 810 (952)
T ss_pred CHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCC--CCCCchHHHHHHHHHhhccccc-cceEEEEEec
Confidence 999999999999999999999999999999999999999999874 3456678999999999999987 4559999999
Q ss_pred CCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 355 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 355 n~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
.+|+.+|||++| |+++.++.+.|+..+|.+|++.+........++|++.+|.+|+||||+|+..++..|.+.++.+.+
T Consensus 811 sRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l 890 (952)
T KOG0735|consen 811 SRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEIL 890 (952)
T ss_pred CCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999989999999999999999999999999999999999999877
Q ss_pred HHh
Q 011305 433 VLL 435 (489)
Q Consensus 433 ~~l 435 (489)
...
T Consensus 891 ~~~ 893 (952)
T KOG0735|consen 891 KRE 893 (952)
T ss_pred Hhc
Confidence 643
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=318.17 Aligned_cols=251 Identities=39% Similarity=0.648 Sum_probs=223.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|+++|+||+|++.+|+++++.+.+|+.+|+.|... ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 346799999999999999999999999999999998875 6788999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
..+|.|+.++.++.+|..|+..+|+||||||+|.+...+.... .......+++..++..++++... .+++||++||++
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~-~~v~VI~aTN~~ 294 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT-TNVKVIMATNRA 294 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC-CCEEEEEecCCc
Confidence 9999999999999999999999999999999999987764322 11223456778899999987544 358899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|++++| ||+..|+++.|+.++|..||+.++.+.....++++..++..|+||||+||..+|++|++.++++.
T Consensus 295 d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~---- 370 (398)
T PTZ00454 295 DTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN---- 370 (398)
T ss_pred hhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999998 99999999999999999999999999888889999999999999999999999999999988752
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCCh
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~ 469 (489)
+ ..|+.+||.+|++++....
T Consensus 371 --~------------~~i~~~df~~A~~~v~~~~ 390 (398)
T PTZ00454 371 --R------------YVILPKDFEKGYKTVVRKT 390 (398)
T ss_pred --C------------CccCHHHHHHHHHHHHhcc
Confidence 1 2499999999999876543
|
|
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=291.93 Aligned_cols=248 Identities=35% Similarity=0.583 Sum_probs=225.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.+.|..+++||+|++..+++|.+.++.|+.+++.|.++ ..||+|+|+|||||||||++||+.|.+.+..|+.+-+..+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 345688899999999999999999999999999999987 8999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~--~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+..|+|+.++.++..|..|+..+|+||||||+|++..+|.... .+.+ ..+..-+||+++||++... .|-||++||+
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDRE-VQRTMLELLNQLDGFss~~-~vKviAATNR 319 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDRE-VQRTMLELLNQLDGFSSDD-RVKVIAATNR 319 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHH-HHHHHHHHHHhhcCCCCcc-ceEEEeeccc
Confidence 9999999999999999999999999999999999999875432 2222 3455668889999997554 4889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
.+.|||+++| |.++.|+||.|+.+.|.+|++.+.++.....++++++||+.|++|+|++.+.+|-+|.+.++||-.
T Consensus 320 vDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr~a-- 397 (424)
T KOG0652|consen 320 VDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRRGA-- 397 (424)
T ss_pred ccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhccc--
Confidence 9999999998 999999999999999999999999999999999999999999999999999999999999998732
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
..|+.+||.+.+..++.
T Consensus 398 ----------------tev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 398 ----------------TEVTHEDFMEGILEVQA 414 (424)
T ss_pred ----------------ccccHHHHHHHHHHHHH
Confidence 13899999999887754
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=289.11 Aligned_cols=247 Identities=38% Similarity=0.620 Sum_probs=223.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.|.+++.|++|++-.|+++++.+..|+.+.+++... ..||+|||+|||||||||+||+++|+.....|+.|.+++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 45689999999999999999999999999999998875 89999999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.+|.|+..++++.+|+.|+.++|+||||||+|+++.+|-.. ........+++-+||++|||+... .++-||++||+.+
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~-~nvkvimatnrad 305 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT-TNVKVIMATNRAD 305 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc-cceEEEEecCccc
Confidence 99999999999999999999999999999999999987532 222334567888999999999644 4588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+||+++| |.++.|+||+||..+++-++.....++.+..++|++.+..+-+..|++||..+|++|.+.++|...
T Consensus 306 tldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr---- 381 (408)
T KOG0727|consen 306 TLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVRENR---- 381 (408)
T ss_pred ccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999988521
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
--+...||+++-+..-
T Consensus 382 --------------yvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 382 --------------YVVLQKDFEKAYKTVV 397 (408)
T ss_pred --------------eeeeHHHHHHHHHhhc
Confidence 1278999999887653
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-37 Score=296.59 Aligned_cols=247 Identities=36% Similarity=0.626 Sum_probs=223.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.++.|..++.|+.|+++..+++++.+..|+.||+++... ..||+||+|||+||||||.||+|+|+.....|+.+-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 345688899999999999999999999999999999886 8899999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~--~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
..+|.|+..+.++++|+.|..++|+|+||||||++..+|-+.. .+.+. .+..-+||+++||+..+++ |-||.+||+
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEi-QrtmLELLNQldGFdsrgD-vKvimATnr 333 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREI-QRTMLELLNQLDGFDSRGD-VKVIMATNR 333 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHH-HHHHHHHHHhccCccccCC-eEEEEeccc
Confidence 9999999999999999999999999999999999999885432 23333 3445588999999987665 889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
.+.|||++.| |+++.|.||.||...+..|+..+...+.+..+++++.+...-+.+||+||.++|.+|.+.|+|.-..
T Consensus 334 ie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRerRm- 412 (440)
T KOG0726|consen 334 IETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRERRM- 412 (440)
T ss_pred ccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHHHHh-
Confidence 9999999999 9999999999999999999999999999999999999999889999999999999999999874221
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
.++++||.+|.+++-
T Consensus 413 -----------------~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 413 -----------------KVTMEDFKKAKEKVL 427 (440)
T ss_pred -----------------hccHHHHHHHHHHHH
Confidence 289999999987653
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=318.97 Aligned_cols=255 Identities=24% Similarity=0.343 Sum_probs=217.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
.++.+|++|+|++.+|+.+.+....+... ....+..+++|+||+||||||||++|+++|++++.+++.++++.+.++|
T Consensus 222 ~~~~~~~dvgGl~~lK~~l~~~~~~~~~~--~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 222 SVNEKISDIGGLDNLKDWLKKRSTSFSKQ--ASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHhhHH--HHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 36778999999999999998755432211 1122357789999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
+|+++..++.+|..|+..+||||||||+|.++..++.. .+.....+++..++..|+. ...+++||+|||+++.+|+
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~---~~~~V~vIaTTN~~~~Ld~ 375 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSE---KKSPVFVVATANNIDLLPL 375 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhc---CCCceEEEEecCChhhCCH
Confidence 99999999999999999999999999999998764432 2344567888999998874 3456999999999999999
Q ss_pred HHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCC--CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE--ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 363 al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~--~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
+++| ||++.++++.|+.++|.+||+.++.+.... .+.+++.+++.|.||||+||+++|.+|+..+..+
T Consensus 376 allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~-------- 447 (489)
T CHL00195 376 EILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE-------- 447 (489)
T ss_pred HHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc--------
Confidence 9998 999999999999999999999999886543 4678999999999999999999999998876542
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh---hhHHHHHHHHHH
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNAD 482 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~---~~~~~y~~~~~~ 482 (489)
.++++.+||..|++++.|++. ++++.+++|...
T Consensus 448 -----------~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~ 483 (489)
T CHL00195 448 -----------KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASS 483 (489)
T ss_pred -----------CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHc
Confidence 135999999999999999853 468999999874
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-36 Score=311.12 Aligned_cols=255 Identities=40% Similarity=0.604 Sum_probs=225.1
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.....|+++|++|+|+++.++.+++.+..++.+++.|... ..+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 121 ~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~ 200 (389)
T PRK03992 121 EVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE 200 (389)
T ss_pred eecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHH
Confidence 3456789999999999999999999999999999998876 678899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+...|.|+.++.++.+|..++...|+||||||+|.+...+...... .....+.+..++..+++.... ..+.||+|||+
T Consensus 201 l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~-~~v~VI~aTn~ 279 (389)
T PRK03992 201 LVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR-GNVKIIAATNR 279 (389)
T ss_pred HhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC-CCEEEEEecCC
Confidence 9999999999999999999999999999999999998876543221 222345667788888877543 35889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
++.+|+++++ ||+..+++|.|+.++|.+||+.++.......+.++..++..|.||+|+||+.+|++|++.++++.
T Consensus 280 ~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~--- 356 (389)
T PRK03992 280 IDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD--- 356 (389)
T ss_pred hhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999998888888999999999999999999999999999887751
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
...|+.+||.+|++.++++....
T Consensus 357 ---------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 ---------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ---------------CCCcCHHHHHHHHHHHhcccccc
Confidence 12499999999999999986544
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=287.66 Aligned_cols=249 Identities=35% Similarity=0.562 Sum_probs=224.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+++.|+++++|+.|+.+.++.+++.+..|+.+|+.|-.+ ..||+|||+|||||||||.+||++|+..+.-|+.|-+++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 3456799999999999999999999999999999999887 899999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc--chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~--~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
++.+|+|+.++.++++|+.|+..+.||||+||+|++.+.|-.. +.+.+ .++..-+|++++||+..++ ++-|+.+||
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdne-vqrtmleli~qldgfdprg-nikvlmatn 324 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNE-VQRTMLELINQLDGFDPRG-NIKVLMATN 324 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHH-HHHHHHHHHHhccCCCCCC-CeEEEeecC
Confidence 9999999999999999999999999999999999999987543 23333 3456678889999997654 488999999
Q ss_pred CCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 356 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 356 ~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
+|+.|||+++| |+++.++|.+||.+.|..|++.+.+.+....++.++-+|..+..-+|++|+.+|.+|.+.++|--.
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfairarr- 403 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR- 403 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh-
Confidence 99999999999 999999999999999999999999999999999999999999999999999999999999987321
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+..|..||.+|+.++-.
T Consensus 404 -----------------k~atekdfl~av~kvvk 420 (435)
T KOG0729|consen 404 -----------------KVATEKDFLDAVNKVVK 420 (435)
T ss_pred -----------------hhhhHHHHHHHHHHHHH
Confidence 12788999999987643
|
|
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=316.58 Aligned_cols=245 Identities=38% Similarity=0.576 Sum_probs=223.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.....++|.|+.|.+++|+++.|.+ .+++.|+.|..+ ..-|+|+||+||||||||+|||++|.+.++||+.+++++++
T Consensus 142 ~~~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FV 220 (596)
T COG0465 142 EDQVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 220 (596)
T ss_pred ccccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhh
Confidence 3357789999999999999999965 557788887765 67789999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..++|..+..++.+|..|+.++|||+||||+|++...|+.+ +..++.-++.+++||.+|||+. .+..|+|+++||+|+
T Consensus 221 emfVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-~~~gviviaaTNRpd 299 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-GNEGVIVIAATNRPD 299 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC-CCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999988643 3455566789999999999997 456799999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
-+|+|++| ||++++.++.||...|.+|++.++++.+...++++..+|+.|.||+|+|+.+++++|+..++|+..
T Consensus 300 VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 300 VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence 99999999 999999999999999999999999999999999999999999999999999999999999988632
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|++.||.+|..++
T Consensus 376 --------------~~i~~~~i~ea~drv 390 (596)
T COG0465 376 --------------KEITMRDIEEAIDRV 390 (596)
T ss_pred --------------eeEeccchHHHHHHH
Confidence 248999999999877
|
|
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=303.92 Aligned_cols=249 Identities=37% Similarity=0.584 Sum_probs=220.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|.++|+||.|++..++++++.+..++.+|+.+..+ ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL 253 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSEL 253 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchh
Confidence 456788999999999999999999999999999998876 6788999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
...|.|.....++.+|..|....|+||||||+|.+..++..... ......+.+..++..++++.... .+.||++||++
T Consensus 254 ~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~ATNr~ 332 (438)
T PTZ00361 254 IQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMATNRI 332 (438)
T ss_pred hhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEecCCh
Confidence 99999999999999999999999999999999999987643221 11223455677888898875443 58899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|++++| ||+..|+|+.|+.++|.+||+.++.+.....+++++.++..+.||+|+||..+|++|++.|+++-
T Consensus 333 d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~---- 408 (438)
T PTZ00361 333 ESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER---- 408 (438)
T ss_pred HHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 999999987 99999999999999999999999999888888999999999999999999999999999988752
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+ ..|+.+||.+|+.++..
T Consensus 409 --r------------~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 --R------------MKVTQADFRKAKEKVLY 426 (438)
T ss_pred --C------------CccCHHHHHHHHHHHHh
Confidence 1 13999999999998744
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-34 Score=309.06 Aligned_cols=247 Identities=37% Similarity=0.574 Sum_probs=216.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...+.++|+||+|++++|+++++.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999997765 7788777654 67779999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.|...+.++.+|..|+..+|+||||||+|.+...++... ........+++.|+..||++... ..++||+|||+|+
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~-~~v~vI~aTn~~~ 204 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN-TGVIVIAATNRPD 204 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC-CCeEEEEecCChh
Confidence 999999999999999999999999999999999998876432 22334567889999999988654 4588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+|++++| ||+..++++.|+.++|.+||+.++.......+.++..++..+.||+++||+.++++|+..+.++.
T Consensus 205 ~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~----- 279 (495)
T TIGR01241 205 VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN----- 279 (495)
T ss_pred hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----
Confidence 99999998 99999999999999999999999988777778889999999999999999999999988765531
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
..+|+.+||..|+.++..
T Consensus 280 -------------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 -------------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred -------------CCCCCHHHHHHHHHHHhc
Confidence 124999999999998754
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=285.55 Aligned_cols=247 Identities=40% Similarity=0.647 Sum_probs=215.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
....|.++|++|+|+++.++.+++.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.+.++++
T Consensus 113 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l 192 (364)
T TIGR01242 113 VEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 192 (364)
T ss_pred eccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHH
Confidence 346689999999999999999999999999999988775 6778999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
...+.|.....++.+|..++...|+||||||+|.+...+...... .....+.+..++..++++... .++.||+|||++
T Consensus 193 ~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~-~~v~vI~ttn~~ 271 (364)
T TIGR01242 193 VRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR-GNVKVIAATNRP 271 (364)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEecCCh
Confidence 999999999999999999999999999999999998765432211 122344567778888876443 458899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|+++++ ||+..++++.|+.++|.+||+.++.......+.++..+++.+.||+|+||..+|++|++.++++.
T Consensus 272 ~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~---- 347 (364)
T TIGR01242 272 DILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE---- 347 (364)
T ss_pred hhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999997 99999999999999999999999988887777899999999999999999999999999987751
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+ ..|+.+||.+|+.++
T Consensus 348 --~------------~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 --R------------DYVTMDDFIKAVEKV 363 (364)
T ss_pred --C------------CccCHHHHHHHHHHh
Confidence 1 239999999999865
|
Many proteins may score above the trusted cutoff because an internal |
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=294.86 Aligned_cols=257 Identities=34% Similarity=0.563 Sum_probs=235.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
+++. .++.|+......+++.+.+++.++..+... .++++++|+|||||||||.+++++|++.+..++.++++++.+++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5566 799999999999999999999999998765 78889999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
.|++++.++..|+.|...+ |++|||||+|.+.+++..... ..+++..+|+..||+... ...++|+++||+|+.||
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~~-~~~vivl~atnrp~sld 334 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLKP-DAKVIVLAATNRPDSLD 334 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCcC-cCcEEEEEecCCccccC
Confidence 9999999999999999999 999999999999998765332 578899999999999873 45588999999999999
Q ss_pred HHHHh-hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 362 AAMLR-RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 362 ~al~r-Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
++++| ||+..+.+..|+..+|.+|++.+.+.++...+.++..+|..+.||+|+|+..+|.+|+..+.++
T Consensus 335 ~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~---------- 404 (693)
T KOG0730|consen 335 PALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQATRR---------- 404 (693)
T ss_pred hhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh----------
Confidence 99998 9999999999999999999999999999998899999999999999999999999999998886
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh---HHHHHHHHHHhchhhc
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEIL 488 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~---~~~y~~~~~~~g~~~~ 488 (489)
++++|..|+..++||+..+ ...-..|.++.|.|.+
T Consensus 405 -------------~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~l 442 (693)
T KOG0730|consen 405 -------------TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEEL 442 (693)
T ss_pred -------------hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHH
Confidence 5788999999999998764 2556779988888765
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=298.37 Aligned_cols=244 Identities=36% Similarity=0.580 Sum_probs=212.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..+.++|+|++|++++++.+.+.+.. ++.++.+... ...++++||+||||||||++|+++|.+++.|++.++++++..
T Consensus 176 ~~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~ 254 (638)
T CHL00176 176 ADTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE 254 (638)
T ss_pred cCCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH
Confidence 34578999999999999999997654 6777776654 566789999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
.+.|.....++.+|..|+...||||||||+|.+...++.. ...+.....+++.|+..||++... ..++||++||+++.
T Consensus 255 ~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~-~~ViVIaaTN~~~~ 333 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN-KGVIVIAATNRVDI 333 (638)
T ss_pred HhhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC-CCeeEEEecCchHh
Confidence 8888888899999999999999999999999998776432 122344567889999999988643 45889999999999
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
+|++++| ||+..+.++.|+.++|.+||+.+++......+.++..+|..+.||+++||+.++++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999998 99999999999999999999999988777778889999999999999999999999988776541
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
...|+.+||+.|+.++
T Consensus 408 ------------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------------CCCcCHHHHHHHHHHH
Confidence 1249999999999887
|
|
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=286.03 Aligned_cols=273 Identities=28% Similarity=0.488 Sum_probs=214.3
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTT------ 269 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~------ 269 (489)
..+....|+++|++|+|++..++++++.+..++.+++.|... ..+++++|||||||||||++|+++|++++.+
T Consensus 170 ~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~ 249 (512)
T TIGR03689 170 DLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETG 249 (512)
T ss_pred cceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccC
Confidence 345567899999999999999999999999999999998875 7788999999999999999999999998654
Q ss_pred ----EEEEeccchhhhhccchHHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 270 ----FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 270 ----~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
|+.++.+++.++|.|++++.++.+|..++.. .|+||||||+|.++..++... .++..+.++++|+..||++
T Consensus 250 ~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~-s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 250 DKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGV-SSDVETTVVPQLLSELDGV 328 (512)
T ss_pred CceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCc-cchHHHHHHHHHHHHhccc
Confidence 6677788899999999999999999988764 689999999999998775432 2334567889999999998
Q ss_pred ccCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCC-CCC---------CCCCHHHHHHH--
Q 011305 342 TQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ-TGE---------ESLPYDLLVER-- 407 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~-~~~---------~~~dl~~La~~-- 407 (489)
... .+++||+|||+++.||++++| ||+..|+|+.|+.++|.+||+.++... +.. ...++..+++.
T Consensus 329 ~~~-~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av 407 (512)
T TIGR03689 329 ESL-DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAV 407 (512)
T ss_pred ccC-CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHH
Confidence 654 458899999999999999999 999999999999999999999998642 221 11122222222
Q ss_pred ---------------------------hcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHH
Q 011305 408 ---------------------------TEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 460 (489)
Q Consensus 408 ---------------------------t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~ 460 (489)
++.+||++|+++|.+|...++++.+.. ....|+.+|+..
T Consensus 408 ~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~--------------~~~~~~~~~l~~ 473 (512)
T TIGR03689 408 DHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITG--------------GQVGLRIEHLLA 473 (512)
T ss_pred HHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhc--------------CCcCcCHHHHHH
Confidence 345778888888888888777765421 113599999999
Q ss_pred HHhhhCCChhh--hHHHHHHHHHHhch
Q 011305 461 ALKNTRPSAHL--HAHRYEKFNADYGS 485 (489)
Q Consensus 461 AL~~~~ps~~~--~~~~y~~~~~~~g~ 485 (489)
|+..-.....+ --..=++|..+-|-
T Consensus 474 a~~~e~~~~~~~~~~~~~~~w~~~~~~ 500 (512)
T TIGR03689 474 AVLDEFRESEDLPNTTNPDDWARISGK 500 (512)
T ss_pred HHHHhhcccccCCCCCCHHHHhhhhCC
Confidence 99765433221 12334567776553
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.7e-32 Score=265.98 Aligned_cols=248 Identities=34% Similarity=0.564 Sum_probs=217.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
...+++|+.+.|......++++.+..|+.+|++|... ..+|++++||||||||||++|+++|..++++|+.+.++++.+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 4467899999999999999999999999999999984 899999999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
+|.|++.+.+++.|..|+...|||||+||||++.+.+.... .......+.+-.|+++|+++... +.|-+|+|||+|+.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l-~rVk~ImatNrpdt 283 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTL-HRVKTIMATNRPDT 283 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhc-ccccEEEecCCccc
Confidence 99999999999999999999999999999999999875332 22223344556677788877543 45889999999999
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
|+++|+| |.++.++.|+|+...|..|++.+.........+|.+.+.+.++||.|+|++..|++|-+.+++...
T Consensus 284 LdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~----- 358 (388)
T KOG0651|consen 284 LDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER----- 358 (388)
T ss_pred cchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccchhh-----
Confidence 9999999 999999999999999999999998887777888999999999999999999999999987766321
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
. .+-+|||.+++.++...
T Consensus 359 -~------------~vl~Ed~~k~vrk~~~~ 376 (388)
T KOG0651|consen 359 -D------------EVLHEDFMKLVRKQADA 376 (388)
T ss_pred -H------------HHhHHHHHHHHHHHHHH
Confidence 1 27799999998876543
|
|
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.9e-31 Score=299.34 Aligned_cols=280 Identities=39% Similarity=0.590 Sum_probs=234.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.++++|++|+|++.+++.+++.+..++.+|+.+..+ ..+++++||+||||||||++|+++|++++.+++.++++++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 478899999999999999999999999999998876 6788999999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
+.|..+..++.+|..+....|+||||||+|.+.+.++... .+..+++++.|+..|+++... ..++||++||.++.+|
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~~-~~vivI~atn~~~~ld 328 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKGR-GRVIVIGATNRPDALD 328 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhccccC-CCEEEEeecCChhhcC
Confidence 9999999999999999999999999999999998765432 233467889999999988544 4588999999999999
Q ss_pred HHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh--
Q 011305 362 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG-- 437 (489)
Q Consensus 362 ~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~-- 437 (489)
+++++ ||+..+.++.|+.++|.+||+.+.+......+.+++.+++.+.||+++|+..+++.|+..+++|.......
T Consensus 329 ~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 329 PALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 99998 99999999999999999999999988887778899999999999999999999999999999886542111
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhH---HHHHHHHHHhchh
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA---HRYEKFNADYGSE 486 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~---~~y~~~~~~~g~~ 486 (489)
.....+.... ....++.+||..|++.++|+...+. ..-..|.+..|.+
T Consensus 409 ~~~~i~~~~~-~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~ 459 (733)
T TIGR01243 409 EAEEIPAEVL-KELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLE 459 (733)
T ss_pred ccccccchhc-ccccccHHHHHHHHhhccccccchhhccccccchhhcccHH
Confidence 0111111111 1234899999999999999975432 2234566655544
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=281.71 Aligned_cols=245 Identities=33% Similarity=0.518 Sum_probs=213.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
...+|+++.|.+..++.+.+.+.. +..++.+... ...++++||+||||||||+++++++++++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 456799999999999999998766 4455555433 45668999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
.|.....++.+|..++..+|+||||||+|.+...++.. ...+....++++.+|..||++... ..++||+|||+|+.+|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~-~~vivIaaTN~p~~lD 304 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN-EGIIVIAATNRPDVLD 304 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC-CCeeEEEecCChhhcC
Confidence 99999999999999999999999999999999877642 223344567889999999988653 4588999999999999
Q ss_pred HHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 362 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 362 ~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
++++| ||++.+.++.|+.++|.+||+.++.+.+...+.++..+++.|.||||+||.++|++|+..++++-
T Consensus 305 ~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-------- 376 (644)
T PRK10733 305 PALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------- 376 (644)
T ss_pred HHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--------
Confidence 99998 99999999999999999999999999888888999999999999999999999999999877641
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 440 EVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 440 ~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
...|+.+||++|+.++.+.
T Consensus 377 ----------~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 ----------KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred ----------CCcccHHHHHHHHHHHhcc
Confidence 1249999999999877654
|
|
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=291.86 Aligned_cols=264 Identities=34% Similarity=0.594 Sum_probs=224.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEecc
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s 276 (489)
...+.|++|+|++.++..|++.+..|+.||+.|..+ ..||++||||||||||||+.|+++|..+ ...|+.-+++
T Consensus 259 ~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkga 338 (1080)
T KOG0732|consen 259 DSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGA 338 (1080)
T ss_pred hcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCc
Confidence 356789999999999999999999999999999987 8999999999999999999999999988 4667777889
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+..++|+|+.++.++.+|+.|+..+|+|+|+||||.|++.|+.... .....++..||..|+|+..++. |+||+|||+
T Consensus 339 D~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqE--qih~SIvSTLLaLmdGldsRgq-VvvigATnR 415 (1080)
T KOG0732|consen 339 DCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQE--QIHASIVSTLLALMDGLDSRGQ-VVVIGATNR 415 (1080)
T ss_pred hhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHH--HhhhhHHHHHHHhccCCCCCCc-eEEEcccCC
Confidence 9999999999999999999999999999999999999999864322 2245689999999999987665 889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
|+.+|++++| ||++.++||+|+.+.|..|+..+..+-...... -++.+|+.|.||.|+||+.+|.+|++.+++|.-.
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~P 495 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSFP 495 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccccC
Confidence 9999999999 999999999999999999999998776644332 3677999999999999999999999999987654
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 471 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~ 471 (489)
..........-+. .. ..+..+||..|+.++.|+.+.
T Consensus 496 q~y~s~~kl~~d~-~~-ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 496 QIYSSSDKLLIDV-AL-IKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred eeecccccccccc-hh-hhhhhHhhhhhhhccCCCCCc
Confidence 4433322222111 11 128899999999998887654
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-30 Score=265.50 Aligned_cols=270 Identities=29% Similarity=0.447 Sum_probs=218.0
Q ss_pred CCCCCcc--ccCcHHHHHH-HHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEeccch
Q 011305 204 PDVKWES--IKGLENAKRL-LKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASSV 278 (489)
Q Consensus 204 ~~~~~~d--liG~e~~k~~-L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~-~~~i~v~~s~l 278 (489)
|+-.|++ |+|++.--.. .+++.....--|+...++ ....+|+|||||||||||.+||.|.+.++ .+--.|++.++
T Consensus 214 Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeI 293 (744)
T KOG0741|consen 214 PDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEI 293 (744)
T ss_pred CCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHH
Confidence 5556666 5777654433 455555555556666655 56668999999999999999999999996 44566899999
Q ss_pred hhhhccchHHHHHHHHHHHHhc--------CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 279 VSKWRGDSEKLIKVLFELARHH--------APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~--------~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
.++|+|+++.+++.+|..|... .-.||++||||+++.+|++......+...++++||.-|||+..-+ +++|
T Consensus 294 L~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-NILV 372 (744)
T KOG0741|consen 294 LNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-NILV 372 (744)
T ss_pred HHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-cEEE
Confidence 9999999999999999988531 124999999999999999888888888999999999999997544 5999
Q ss_pred EEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCC----CCCCCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 351 IatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~~~~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
|+-||+++.+|+||+| ||+.++++.+||+..|.+|++.+.+++. +..++|+++||..|..|||++|+.+++.|.
T Consensus 373 IGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVksA~ 452 (744)
T KOG0741|consen 373 IGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKSAQ 452 (744)
T ss_pred EeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHHHH
Confidence 9999999999999999 9999999999999999999999876543 457899999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh---hHHHHH
Q 011305 425 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL---HAHRYE 477 (489)
Q Consensus 425 ~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~---~~~~y~ 477 (489)
..|+.|....- ......+. ..+.. .|+++||..||..++|+.-. +++.|.
T Consensus 453 S~A~nR~vk~~-~~~~~~~~-~~e~l-kV~r~DFl~aL~dVkPAFG~see~l~~~~ 505 (744)
T KOG0741|consen 453 SFAMNRHVKAG-GKVEVDPV-AIENL-KVTRGDFLNALEDVKPAFGISEEDLERFV 505 (744)
T ss_pred HHHHHhhhccC-cceecCch-hhhhe-eecHHHHHHHHHhcCcccCCCHHHHHHHH
Confidence 99998876543 11222221 12222 39999999999999999542 355544
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=291.38 Aligned_cols=204 Identities=22% Similarity=0.272 Sum_probs=169.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh----------cc------------------------
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW----------RG------------------------ 284 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~----------~g------------------------ 284 (489)
..+++||||+||||||||+||+|+|.++++||+.|+++++...+ +|
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 57889999999999999999999999999999999999998654 11
Q ss_pred -------ch--HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--cCCCcEEEEEE
Q 011305 285 -------DS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QSDELVFVLAA 353 (489)
Q Consensus 285 -------~~--~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~~~~~viVIat 353 (489)
.. ...++.+|+.|+.++||||||||||++..+.. ....++.|+.+|++.. ....+|+||||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds--------~~ltL~qLLneLDg~~~~~s~~~VIVIAA 1778 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNES--------NYLSLGLLVNSLSRDCERCSTRNILVIAS 1778 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCcc--------ceehHHHHHHHhccccccCCCCCEEEEEe
Confidence 11 22378899999999999999999999976521 1224788999999764 23457999999
Q ss_pred eCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhc--CCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 354 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLL--PSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 354 Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l--~~~~~~~-~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
||+|+.||||++| ||++.|.++.|+..+|.+++..++ +...... ..+++.+|+.|.||+|+||.++|++|+..++
T Consensus 1779 TNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAi 1858 (2281)
T CHL00206 1779 THIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISI 1858 (2281)
T ss_pred CCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999887653 3333333 3579999999999999999999999999988
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
++.. ..|+.+||+.|+.++...
T Consensus 1859 rq~k------------------s~Id~~~I~~Al~Rq~~g 1880 (2281)
T CHL00206 1859 TQKK------------------SIIDTNTIRSALHRQTWD 1880 (2281)
T ss_pred HcCC------------------CccCHHHHHHHHHHHHhh
Confidence 8621 138999999999877544
|
|
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=247.56 Aligned_cols=186 Identities=20% Similarity=0.207 Sum_probs=151.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHh-----cCCcEEEEchhhhH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAI 313 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l 313 (489)
..+|++++||||||||||++|+++|++++.+++.++++++.++|+|++++.++.+|..|+. .+||||||||||++
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 5788999999999999999999999999999999999999999999999999999999975 46999999999999
Q ss_pred HhhhcccchhhHHHHHH-HHHHHHHhcCCc-----------cCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCH
Q 011305 314 ISQRGEARSEHEASRRL-KTELLIQMDGLT-----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 379 (489)
Q Consensus 314 ~~~r~~~~~~~~~~~~i-~~~LL~~ldg~~-----------~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~ 379 (489)
++.+... ......++ ..+|++.+|+.. .....|+||+|||+|+.||++|+| ||++.+ ..|+.
T Consensus 225 ~g~r~~~--~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~ 300 (413)
T PLN00020 225 AGRFGTT--QYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTR 300 (413)
T ss_pred CCCCCCC--CcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCH
Confidence 9987632 23333444 489999988642 335669999999999999999999 999865 58999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhHHHH
Q 011305 380 EARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 380 ~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~~a~r 429 (489)
++|.+||+.++++..+. ..++..|+..+.| |.|+--..+..++...-+.
T Consensus 301 e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~ 353 (413)
T PLN00020 301 EDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHH
Confidence 99999999999887665 4677778877766 4444334444444444333
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-23 Score=205.36 Aligned_cols=235 Identities=19% Similarity=0.235 Sum_probs=168.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc----CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 277 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~----~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~ 277 (489)
++++|++++|+++++++.+.. .++.+... ..++.++||+||||||||++|+++|+.+ ..+++.+++++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 489999999999999876633 33333322 1234579999999999999999999976 24699999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+.+.|+++.....++..+. ++||||||+|.+...+. .......++..|+..|+.. ...++||++++..
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~---~~~~~vI~ag~~~ 171 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQ---RDDLVVIFAGYKD 171 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcC---CCCEEEEEeCCcH
Confidence 999999988888888887764 38999999999865322 1223466788898888743 2346677776532
Q ss_pred C-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHH------hcCCc-HHHHHHHHHHHH
Q 011305 358 W-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVER------TEGYS-GSDIRLVSKEAA 424 (489)
Q Consensus 358 ~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~------t~G~s-g~Di~~l~~~A~ 424 (489)
. .++|++++||+..+.|+.|+.+++.+|++.++.+.....+.+ ...+... ...|. +++++++++.+.
T Consensus 172 ~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~ 251 (287)
T CHL00181 172 RMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRAR 251 (287)
T ss_pred HHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 2 246999999999999999999999999999998766543332 2333332 13344 899999999999
Q ss_pred hHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHH
Q 011305 425 MQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 460 (489)
Q Consensus 425 ~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~ 460 (489)
.....|....-. +..+ ......|+.+||.+
T Consensus 252 ~~~~~r~~~~~~---~~~~---~~~l~~~~~~d~~~ 281 (287)
T CHL00181 252 MRQANRIFESGG---RVLT---KADLVTIEAEDILK 281 (287)
T ss_pred HHHHHHHHcCCC---CCCC---HHHHhCCCHHHHhH
Confidence 988887665311 1111 11234577888754
|
|
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-22 Score=201.12 Aligned_cols=235 Identities=19% Similarity=0.225 Sum_probs=169.8
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc----CCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEeccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNISASSV 278 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~----~~~~~~vLL~GppGtGKT~lAralA~el~-------~~~i~v~~s~l 278 (489)
+++|++++|+++.+++.+ ...++.+... ..+..+++|+||||||||++|+++|+.+. .+++.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 699999999999998777 4344443322 22456899999999999999999998772 37999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP- 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p- 357 (489)
.+.+.|+++..+..+|+.+.. +||||||++.+...++. ......+++.|+..|+.. ...++||++++..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~---gvL~iDEi~~L~~~~~~----~~~~~~~~~~Ll~~le~~---~~~~~vI~a~~~~~ 171 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMG---GVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENQ---RDDLVVILAGYKDR 171 (284)
T ss_pred hHhhcccchHHHHHHHHHccC---cEEEEechhhhccCCCc----cchHHHHHHHHHHHHhcC---CCCEEEEEeCCcHH
Confidence 999999888888888887654 89999999998643221 223456778889988732 2446677776543
Q ss_pred -Cc---ccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh------c-CCcHHHHHHHHHHHHh
Q 011305 358 -WE---LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT------E-GYSGSDIRLVSKEAAM 425 (489)
Q Consensus 358 -~~---Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t------~-G~sg~Di~~l~~~A~~ 425 (489)
+. +++++.+||...+.||.++.+++..|+..++.+.....+.+ +..+.... + --+++++++++..+..
T Consensus 172 ~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~ 251 (284)
T TIGR02880 172 MDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARL 251 (284)
T ss_pred HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHH
Confidence 22 58999999999999999999999999999998765443333 23333331 2 2358999999999988
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 011305 426 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 461 (489)
Q Consensus 426 ~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~A 461 (489)
....|+...... ..+. .....|+.+|+..+
T Consensus 252 ~~~~r~~~~~~~---~~~~---~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 252 RQANRLFCDLDR---VLDK---SDLETIDPEDLLAS 281 (284)
T ss_pred HHHHHHhcCcCC---CCCH---HHHhCCCHHHHhhc
Confidence 877776543111 1111 12345888888654
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-22 Score=199.15 Aligned_cols=215 Identities=18% Similarity=0.189 Sum_probs=157.8
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhccc---CCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGL---LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASS 277 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~---~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~ 277 (489)
+++++|++.+|+++++.+.+..........+ .+...+++|+||||||||++|+++|+.+ ..+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 6789999999999999887765443322222 2334689999999999999999999875 34788999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+.++|+....+..+|..+. ++||||||+|.|.... +....+..++.|+..|+.. ...+++|+++...
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~---~~~~~vila~~~~ 153 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDN---RNEFVLILAGYSD 153 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhcc---CCCEEEEecCCcc
Confidence 999999999999999988775 3899999999996321 1122355677888888743 2334455554322
Q ss_pred -----CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh---------cCCcHHHHHHHHHH
Q 011305 358 -----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT---------EGYSGSDIRLVSKE 422 (489)
Q Consensus 358 -----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t---------~G~sg~Di~~l~~~ 422 (489)
..+++++++||...+.||.++.+++.+|++.++.......+.+ ++.+++.. ..-+++.+++++..
T Consensus 154 ~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 154 EMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred hhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHH
Confidence 2368899999998999999999999999999997765543333 34443321 12467888888888
Q ss_pred HHhHHHHHHHH
Q 011305 423 AAMQPLRRLMV 433 (489)
Q Consensus 423 A~~~a~rR~~~ 433 (489)
|......|.+.
T Consensus 234 a~~~~~~r~~~ 244 (261)
T TIGR02881 234 AIRRQAVRLLD 244 (261)
T ss_pred HHHHHHHHHhc
Confidence 88776666543
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.8e-21 Score=195.92 Aligned_cols=213 Identities=24% Similarity=0.388 Sum_probs=164.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
..+..|+++|-....++.+..+....- +... ...|.+++|||||||||||++|+.+|...|..+-.+.+.++..-.
T Consensus 349 ~gk~pl~~ViL~psLe~Rie~lA~aTa-NTK~---h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG 424 (630)
T KOG0742|consen 349 RGKDPLEGVILHPSLEKRIEDLAIATA-NTKK---HQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLG 424 (630)
T ss_pred cCCCCcCCeecCHHHHHHHHHHHHHhc-cccc---ccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccc
Confidence 345569999999999999988654422 1111 135668999999999999999999999999999999888875432
Q ss_pred ccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
. +.-..++.+|+.++... .-+|||||+|.++.+|.... -++..+..++.||..-. .....++++.+||+|..+|
T Consensus 425 ~-qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnkty-mSEaqRsaLNAlLfRTG---dqSrdivLvlAtNrpgdlD 499 (630)
T KOG0742|consen 425 A-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTY-MSEAQRSALNALLFRTG---DQSRDIVLVLATNRPGDLD 499 (630)
T ss_pred h-HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhh-hcHHHHHHHHHHHHHhc---ccccceEEEeccCCccchh
Confidence 2 34467899999998754 35889999999999886532 34556778888887653 2334577888999999999
Q ss_pred HHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC----------------------CC-CC----HHHHHHHhcCCcHH
Q 011305 362 AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE----------------------ES-LP----YDLLVERTEGYSGS 414 (489)
Q Consensus 362 ~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~----------------------~~-~d----l~~La~~t~G~sg~ 414 (489)
.++-+||+..++||+|..++|..||..|+.++... .+ .+ +.+.|++|+||||+
T Consensus 500 sAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGR 579 (630)
T KOG0742|consen 500 SAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGR 579 (630)
T ss_pred HHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHH
Confidence 99999999999999999999999999988544321 01 11 45688999999999
Q ss_pred HHHHHHHHHH
Q 011305 415 DIRLVSKEAA 424 (489)
Q Consensus 415 Di~~l~~~A~ 424 (489)
+|..|+....
T Consensus 580 EiakLva~vQ 589 (630)
T KOG0742|consen 580 EIAKLVASVQ 589 (630)
T ss_pred HHHHHHHHHH
Confidence 9998776433
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.5e-22 Score=213.00 Aligned_cols=241 Identities=22% Similarity=0.261 Sum_probs=198.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
..+||+|+||||||++++++|+++|.+++.++|.++.....+..+..+...|..|+...|+|||+-++|.+..+... +
T Consensus 432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dg-g- 509 (953)
T KOG0736|consen 432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDG-G- 509 (953)
T ss_pred eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCC-c-
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999855433 1
Q ss_pred hhHHHHHHHHHHHHH--hcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 011305 323 EHEASRRLKTELLIQ--MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP 400 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~--ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d 400 (489)
...++...+-.. .+........++||++|+..+.+++.+++-|.+++.++.|+.++|.+||+.++.......++.
T Consensus 510 ---ed~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n~~v~ 586 (953)
T KOG0736|consen 510 ---EDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLNQDVN 586 (953)
T ss_pred ---hhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccchHHH
Confidence 123333333222 333444566799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh--hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhH----H
Q 011305 401 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL--EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA----H 474 (489)
Q Consensus 401 l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l--e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~----~ 474 (489)
++.++.+|.||+.+|+..++.+....+..+..+.. ...++............+++|||.+++.++|...+..+ .
T Consensus 587 ~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKI 666 (953)
T KOG0736|consen 587 LKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKI 666 (953)
T ss_pred HHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCC
Confidence 99999999999999999999988665555544322 11222233334455667999999999999998877654 4
Q ss_pred HHHHHHHHhchhhc
Q 011305 475 RYEKFNADYGSEIL 488 (489)
Q Consensus 475 ~y~~~~~~~g~~~~ 488 (489)
..+.|.+..|.|..
T Consensus 667 PnV~WdDVGGLeev 680 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEV 680 (953)
T ss_pred CccchhcccCHHHH
Confidence 57889999998764
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-21 Score=191.25 Aligned_cols=185 Identities=31% Similarity=0.449 Sum_probs=151.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhh--cccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEec
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYF--TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISA 275 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~--~~~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~ 275 (489)
-|+.++--.++|+.|...+...+...+.. ..+....+-+|||||||||||+|++++|+.+ ...++++++
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 38899999999999998877755444322 2234555679999999999999999999998 355799999
Q ss_pred cchhhhhccchHHHHHHHHHHHHhcC---C--cEEEEchhhhHHhhhccc--chhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARHHA---P--STIFLDEIDAIISQRGEA--RSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~~~---p--~VL~IDEiD~l~~~r~~~--~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
..++++|.+++.+.+..+|++....- . ..++|||+++|+..|... ..+....-++++++|+++|.+... ++|
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~-~Nv 298 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRY-PNV 298 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccC-CCE
Confidence 99999999999999999998876421 1 356689999999988532 233334557899999999988654 558
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
++++|+|-.+.+|.|+.+|-+-..++++|+...+.+|++.++.+
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieE 342 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEE 342 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999987743
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.8e-21 Score=169.92 Aligned_cols=130 Identities=41% Similarity=0.660 Sum_probs=116.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.+...+.+..+|..+.... |+||||||+|.+....+ ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~--~~~ 78 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQ--PSS 78 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCS--TSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhcccccc--ccc
Confidence 689999999999999999999999999999999998889999999999999998887 99999999999998872 234
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHH-hhcccccccCC
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAML-RRLEKRILVPL 376 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~-rRf~~~i~~~~ 376 (489)
......+++.|+..++........++||++||.++.++++++ +||+..+++|+
T Consensus 79 ~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 79 SSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp SHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 455677889999999988777677999999999999999999 99999998874
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-20 Score=199.64 Aligned_cols=254 Identities=21% Similarity=0.241 Sum_probs=193.5
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccchhhhhcc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSVVSKWRG 284 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~l~~~~~g 284 (489)
.+++-...+|+...+....| ...+.++||+||+|||||.|++++++++. .++..++|+.+.+....
T Consensus 408 ~d~i~~~s~kke~~n~~~sp----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhccc----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 34555556666655433222 23346899999999999999999999884 56778999999888788
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc-cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHH
Q 011305 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE-ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 363 (489)
Q Consensus 285 ~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~-~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~a 363 (489)
...+.+..+|..+..++|+||++|++|.|++.... .+..+....++...+.+.+..+...+..+.+|++.+....+++.
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 88889999999999999999999999999984332 23334444444444445555555667778899999999999998
Q ss_pred HHh--hcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 364 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 364 l~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
+.+ +|+..+.+|.|+..+|.+||+..+++.... ...|++-++..|+||...|+..++.+|.+.+.......
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~------ 631 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISN------ 631 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhcc------
Confidence 887 899999999999999999999999876633 33467779999999999999999999999887432210
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhHHH--H--HHHHHHhchh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHR--Y--EKFNADYGSE 486 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~~~--y--~~~~~~~g~~ 486 (489)
.+ +-+|.++|.++|+.+.|.+.+.++. - -.|.+..|.+
T Consensus 632 ------~~--klltke~f~ksL~~F~P~aLR~ik~~k~tgi~w~digg~~ 673 (952)
T KOG0735|consen 632 ------GP--KLLTKELFEKSLKDFVPLALRGIKLVKSTGIRWEDIGGLF 673 (952)
T ss_pred ------Cc--ccchHHHHHHHHHhcChHHhhhccccccCCCCceecccHH
Confidence 11 1399999999999999988764322 1 3566666643
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-20 Score=191.45 Aligned_cols=224 Identities=23% Similarity=0.351 Sum_probs=171.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCC-ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPW-KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 284 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~-~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g 284 (489)
.+|+.|+-..+.|+.+.+-+..+.+..+++.+...++ +|.|||||||||||+++.|+|++++..++.+..++....
T Consensus 198 stF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n--- 274 (457)
T KOG0743|consen 198 STFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD--- 274 (457)
T ss_pred CCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc---
Confidence 6788999999999999999999999999998875555 799999999999999999999999999999988775322
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-----hhHHHHHHHHHHHHHhcCCcc-CCCcEEEEEEeCCCC
Q 011305 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-----EHEASRRLKTELLIQMDGLTQ-SDELVFVLAATNLPW 358 (489)
Q Consensus 285 ~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-----~~~~~~~i~~~LL~~ldg~~~-~~~~viVIatTn~p~ 358 (489)
. . ++.++..... .+||+|+|||+-+.-+..... ....+...++.||+.+||+.. .++-.|||.|||.++
T Consensus 275 -~-d-Lr~LL~~t~~--kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~E 349 (457)
T KOG0743|consen 275 -S-D-LRHLLLATPN--KSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKE 349 (457)
T ss_pred -H-H-HHHHHHhCCC--CcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChh
Confidence 2 2 6666655443 379999999987653321111 111234678999999999954 445577899999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC--CcHHHHHH-HHHH--HHhHHHHHH
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG--YSGSDIRL-VSKE--AAMQPLRRL 431 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G--~sg~Di~~-l~~~--A~~~a~rR~ 431 (489)
.|||||+| |.+.+|+++..+.+.-+.++..|+.-.. ...-++++.+...+ .||+|+.. ++.. .+..+++++
T Consensus 350 kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~--~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~dad~~lk~L 427 (457)
T KOG0743|consen 350 KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE--DHRLFDEIERLIEETEVTPAQVAEELMKNKNDADVALKGL 427 (457)
T ss_pred hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC--CcchhHHHHHHhhcCccCHHHHHHHHhhccccHHHHHHHH
Confidence 99999999 9999999999999999999999996533 11223444444333 59999976 4443 477777777
Q ss_pred HHHhhhhh
Q 011305 432 MVLLEGRQ 439 (489)
Q Consensus 432 ~~~le~~~ 439 (489)
...++...
T Consensus 428 v~~l~~~~ 435 (457)
T KOG0743|consen 428 VEALESKK 435 (457)
T ss_pred HHHHHhhh
Confidence 76665443
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.1e-19 Score=168.19 Aligned_cols=191 Identities=18% Similarity=0.182 Sum_probs=125.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
...+.+|+|++|+++++..++-.+....... .+..++|||||||+||||||+.+|++++.++..++++.+...
T Consensus 17 ~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~-------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 17 RLRPKSLDEFIGQEHLKGNLKILIRAAKKRG-------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp HTS-SSCCCS-S-HHHHHHHHHHHHHHHCTT-------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred hcCCCCHHHccCcHHHHhhhHHHHHHHHhcC-------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 3466789999999999999987665543221 234689999999999999999999999999999888654211
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-----C----------CC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-----S----------DE 346 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-----~----------~~ 346 (489)
..+..++... ....|||||||+.+.. .++..|+..|+...- . -.
T Consensus 90 ------~dl~~il~~l--~~~~ILFIDEIHRlnk-------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 90 ------GDLAAILTNL--KEGDILFIDEIHRLNK-------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp ------HHHHHHHHT----TT-EEEECTCCC--H-------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred ------HHHHHHHHhc--CCCcEEEEechhhccH-------------HHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1222333322 2347999999999853 355678888874431 1 12
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~ 421 (489)
+.-+|+||++...+++++++||.....+..++.++..+|++......+...+.+ ..++|.++.| +++-...+++
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~ 223 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLR 223 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHH
Confidence 466889999999999999999999889999999999999998887766664443 5667777776 5555444444
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.2e-18 Score=171.94 Aligned_cols=216 Identities=25% Similarity=0.310 Sum_probs=142.8
Q ss_pred CCCCCCccccCcHHHHH---HHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~---~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
..+.++++++|++.... -|..++.. ....+++|||||||||||+|+.||+..+.+|..+++..
T Consensus 18 mRP~~lde~vGQ~HLlg~~~~lrr~v~~------------~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-- 83 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEGKPLRRAVEA------------GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-- 83 (436)
T ss_pred hCCCCHHHhcChHhhhCCCchHHHHHhc------------CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--
Confidence 35678999999998763 35555433 22368999999999999999999999999999999754
Q ss_pred hhhccchHHHHHHHHHHHHhcC----CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 280 SKWRGDSEKLIKVLFELARHHA----PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~----p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
..-+.++.+++.|+... ..|||||||+.+... -++.||-.++ .+..++|-+||.
T Consensus 84 -----~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~-------------QQD~lLp~vE----~G~iilIGATTE 141 (436)
T COG2256 84 -----SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA-------------QQDALLPHVE----NGTIILIGATTE 141 (436)
T ss_pred -----ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh-------------hhhhhhhhhc----CCeEEEEeccCC
Confidence 34567888888885433 379999999988543 3456777775 333344445555
Q ss_pred CC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC--CCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 356 LP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 356 ~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~--~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
+| ..++++++||+ .++.+...+.++..+++...+.. .++. ..+.++ .+....+-..+.+..|+.
T Consensus 142 NPsF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~-----------~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 142 NPSFELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLD-----------EEALDYLVRLSNGDARRA 209 (436)
T ss_pred CCCeeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCC-----------HHHHHHHHHhcCchHHHH
Confidence 56 57999999999 67888999999999998884422 2222 011111 122222333333444555
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 471 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~ 471 (489)
++.+|.......... .++.+++++.+.+-.+...+
T Consensus 210 LN~LE~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~Dk 244 (436)
T COG2256 210 LNLLELAALSAEPDE-----VLILELLEEILQRRSARFDK 244 (436)
T ss_pred HHHHHHHHHhcCCCc-----ccCHHHHHHHHhhhhhccCC
Confidence 555554433322222 25588888888776665443
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-17 Score=168.07 Aligned_cols=189 Identities=17% Similarity=0.161 Sum_probs=133.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~ 286 (489)
+|++++|++++++.|..++...... ...+.+++|+||||||||++|+++|++++.++..+.++....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------ 68 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR-------QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------ 68 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------
Confidence 6899999999999999887543322 123468999999999999999999999998877766543221
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------cCCCcEEEE
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDELVFVL 351 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------------~~~~~viVI 351 (489)
...+...+.. ...+.+|||||+|.+.... ...|+..++... ....++.+|
T Consensus 69 ~~~l~~~l~~--~~~~~vl~iDEi~~l~~~~-------------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li 133 (305)
T TIGR00635 69 PGDLAAILTN--LEEGDVLFIDEIHRLSPAV-------------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLV 133 (305)
T ss_pred chhHHHHHHh--cccCCEEEEehHhhhCHHH-------------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEE
Confidence 1112222222 1345899999999986542 122333332111 112336788
Q ss_pred EEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 352 atTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
++|+++..+++++++||...+.++.|+.+++.++++..+.......+. .++.+++.+.|.. +.+..++..++
T Consensus 134 ~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~ 206 (305)
T TIGR00635 134 GATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVR 206 (305)
T ss_pred EecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHH
Confidence 899999999999999998889999999999999999888755544333 3667888888755 56666666544
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-17 Score=167.45 Aligned_cols=220 Identities=18% Similarity=0.130 Sum_probs=152.1
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+..+.+|++++|+++.++.+...+...... ..++.++||+||||||||++|+++|++++..+..+++..+..
T Consensus 18 ~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~-------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~- 89 (328)
T PRK00080 18 SLRPKSLDEFIGQEKVKENLKIFIEAAKKR-------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK- 89 (328)
T ss_pred hcCcCCHHHhcCcHHHHHHHHHHHHHHHhc-------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC-
Confidence 345668999999999999999877543221 234578999999999999999999999999888777654321
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------cCCC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 346 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------------~~~~ 346 (489)
...+..++... ..++||||||+|.+.... .+.++..|+... ....
T Consensus 90 -----~~~l~~~l~~l--~~~~vl~IDEi~~l~~~~-------------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 90 -----PGDLAAILTNL--EEGDVLFIDEIHRLSPVV-------------EEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred -----hHHHHHHHHhc--ccCCEEEEecHhhcchHH-------------HHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 12233333332 346899999999985431 112233332211 0112
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
.+.+|++|+++..+++++++||...+.++.|+.+++.+|++..+.......+. .++.+++.+.|.. +.+..+++.+..
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~ 228 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRD 228 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHH
Confidence 36788899999999999999999889999999999999999988776655443 3677888888744 666666665444
Q ss_pred HHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 426 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 426 ~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
.+..+ ....|+.+++..++..+...
T Consensus 229 ~a~~~------------------~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 229 FAQVK------------------GDGVITKEIADKALDMLGVD 253 (328)
T ss_pred HHHHc------------------CCCCCCHHHHHHHHHHhCCC
Confidence 33221 01237777777777766544
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.1e-17 Score=185.42 Aligned_cols=231 Identities=21% Similarity=0.223 Sum_probs=155.9
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh---------h
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------S 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---------~ 280 (489)
+++|++.+|+.+.+++........ ..+.+++|+||||||||++|+++|+.++.+++.++++.+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~------~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGK------MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcC------CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 588999999999998765432221 1234799999999999999999999999999999875432 2
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-----C-------ccCCCcE
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-----L-------TQSDELV 348 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg-----~-------~~~~~~v 348 (489)
.|+|.....+...+..+....| ||+|||+|.+....+.. ..+.|+..+|. + .....++
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 4666666677777877766665 89999999998643211 23456665552 1 1112468
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC-----CCCCC------CCCCHHHHHHH-hcCCcHHHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE------ESLPYDLLVER-TEGYSGSDI 416 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~------~~~dl~~La~~-t~G~sg~Di 416 (489)
++|+|||.++.+++++++|| ..+.|+.|+.+++..|++.++. ..++. .+..+..+++. +..+..+++
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l 543 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNL 543 (775)
T ss_pred EEEEecCCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHH
Confidence 89999999999999999999 4789999999999999988762 22221 11224445543 334555777
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 417 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 417 ~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+..+.......+++.... +.. .... .....|+.+++++.+.
T Consensus 544 ~r~i~~~~~~~~~~~~~~--~~~--~~~~--~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 544 ERQIEKICRKAAVKLVEQ--GEK--KKSE--AESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHHHHHHHhc--cCc--ccCC--cccccCCHHHHHHhcC
Confidence 776666665554443210 100 0000 0113489999888876
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-17 Score=182.70 Aligned_cols=236 Identities=20% Similarity=0.305 Sum_probs=162.3
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
....+.....+-++++++|.++..+.+.+.+.. ....+++|+||||||||++|+++|+.+
T Consensus 168 ~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~ 235 (731)
T TIGR02639 168 YTVDLTEKAKNGKIDPLIGREDELERTIQVLCR------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPEN 235 (731)
T ss_pred HhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchh
Confidence 344444555566899999999999887766533 123689999999999999999999987
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
+.+++.++++.+. .+|.|+.+..++.+++.+....|+||||||+|.+.+.........+ +.+.|...+.
T Consensus 236 l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~----~~~~L~~~l~--- 308 (731)
T TIGR02639 236 LKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMD----ASNLLKPALS--- 308 (731)
T ss_pred hcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHH----HHHHHHHHHh---
Confidence 7789999998887 4788999999999999998778899999999999876432221111 2233333332
Q ss_pred cCCCcEEEEEEeCCC-----CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC----C-CCCCHHHHHHHhcCCc
Q 011305 343 QSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG----E-ESLPYDLLVERTEGYS 412 (489)
Q Consensus 343 ~~~~~viVIatTn~p-----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~----~-~~~dl~~La~~t~G~s 412 (489)
.+.+.+|++||.. ...|+++.|||. .+.++.|+.+++.+||+........ . .+..+..++..+..|-
T Consensus 309 --~g~i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 309 --SGKLRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred --CCCeEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 2347788888863 347999999996 6999999999999999977654221 1 1223455566555554
Q ss_pred HHH-----HHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 413 GSD-----IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 413 g~D-----i~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
+.. .-.++.+|.... + +.+.. .....|+.+|+..+++...
T Consensus 386 ~~r~~P~kai~lld~a~a~~--~----------~~~~~--~~~~~v~~~~i~~~i~~~t 430 (731)
T TIGR02639 386 NDRFLPDKAIDVIDEAGASF--R----------LRPKA--KKKANVSVKDIENVVAKMA 430 (731)
T ss_pred ccccCCHHHHHHHHHhhhhh--h----------cCccc--ccccccCHHHHHHHHHHHh
Confidence 321 122333332210 0 00000 0113499999999998875
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-17 Score=177.70 Aligned_cols=191 Identities=18% Similarity=0.236 Sum_probs=137.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 345678889999999999999999887642 23467899999999999999999999865
Q ss_pred -------------------cEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH
Q 011305 269 -------------------TFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 269 -------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
.+++++..+- ..+ ..++.+.+.. ......|++|||+|.|..
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~--~gV----DdIReLie~~~~~P~~gr~KViIIDEah~Ls~---------- 138 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASN--RGV----DEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN---------- 138 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEeccccc--CCH----HHHHHHHHHHHhchhcCCceEEEEEChHhcCH----------
Confidence 2334433211 112 2334444333 233457999999999843
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLL 404 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~L 404 (489)
...+.||+.|+. ....+++|.+||+++.+.+.++||| ..+.|..++.++..+.++..+...+...+.+ ++.|
T Consensus 139 ---~AaNALLKTLEE---PP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~I 211 (700)
T PRK12323 139 ---HAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLL 211 (700)
T ss_pred ---HHHHHHHHhhcc---CCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 246788888873 3445778888999999999999999 7799999999999999988876665554433 5556
Q ss_pred HHHhcCCcHHHHHHHHHHHH
Q 011305 405 VERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 405 a~~t~G~sg~Di~~l~~~A~ 424 (489)
++.+.| +.++...++..+.
T Consensus 212 A~~A~G-s~RdALsLLdQai 230 (700)
T PRK12323 212 AQAAQG-SMRDALSLTDQAI 230 (700)
T ss_pred HHHcCC-CHHHHHHHHHHHH
Confidence 666554 5566666655443
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.6e-17 Score=174.83 Aligned_cols=222 Identities=22% Similarity=0.269 Sum_probs=149.9
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
+.+.+.++.++.+|++++|++..++.++..+.. ..+.++||+||||||||++|+++++.+
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~------------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCG------------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 345566777889999999999999999865422 234689999999999999999998753
Q ss_pred --CCcEEEEeccch-------hhhhccchHH----------------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc
Q 011305 267 --KTTFFNISASSV-------VSKWRGDSEK----------------LIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 267 --~~~~i~v~~s~l-------~~~~~g~~~~----------------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
+.+|+.++|... .....+.... .....+.. ...++|||||++.+.+.
T Consensus 119 ~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~---a~gG~L~IdEI~~L~~~----- 190 (531)
T TIGR02902 119 KEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR---AHGGVLFIDEIGELHPV----- 190 (531)
T ss_pred CCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhc---cCCcEEEEechhhCCHH-----
Confidence 368999998632 1111110000 00011222 23489999999998654
Q ss_pred hhhHHHHHHHHHHHHHhcCCc--------------------------cCCCcEEEEEEeCCCCcccHHHHhhcccccccC
Q 011305 322 SEHEASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVP 375 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ldg~~--------------------------~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~ 375 (489)
.++.|+..++.-. ...+..+|++||+.|+.+++++++|| ..+.|+
T Consensus 191 --------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~ 261 (531)
T TIGR02902 191 --------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFR 261 (531)
T ss_pred --------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCC
Confidence 3344555443210 01223556677788999999999999 568899
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCC
Q 011305 376 LPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 454 (489)
Q Consensus 376 ~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It 454 (489)
.++.+++.+|++..+++.....+.+ ++.++..+. +++++.++++.|+..+..+ ++ ..|+
T Consensus 262 pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~------~~------------~~It 321 (531)
T TIGR02902 262 PLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE------GR------------KRIL 321 (531)
T ss_pred CCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC------CC------------cEEc
Confidence 9999999999999998766553332 444554443 6788888888877644321 11 2399
Q ss_pred HHHHHHHHhhh
Q 011305 455 PEDVEIALKNT 465 (489)
Q Consensus 455 ~eDf~~AL~~~ 465 (489)
.+|++.++..-
T Consensus 322 ~~dI~~vl~~~ 332 (531)
T TIGR02902 322 AEDIEWVAENG 332 (531)
T ss_pred HHHHHHHhCCc
Confidence 99999999743
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.5e-17 Score=170.19 Aligned_cols=189 Identities=16% Similarity=0.185 Sum_probs=132.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++++|++.+.+.|+..+... ..++.+||+||+|||||++|+.+|+.++..
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 345678889999999999999999887542 234569999999999999999999998652
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.+++..- ..-..++.+.+.+. .....|++|||+|.+.. ..
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~------~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~-------------~A 137 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASN------RGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD-------------QS 137 (484)
T ss_pred CCcHHHHHHccCCccceeechhhc------ccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH-------------HH
Confidence 333333210 11223344333332 33457999999998843 35
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.||..++. ....+++|.+|+.++.+.+++++|| ..+.|..++.++....++..+...+...+. .+..|++...
T Consensus 138 ~NALLKtLEE---Pp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~ 213 (484)
T PRK14956 138 FNALLKTLEE---PPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGD 213 (484)
T ss_pred HHHHHHHhhc---CCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888863 4456778888888999999999999 558888888888888888888766654332 3555666555
Q ss_pred CCcHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKE 422 (489)
Q Consensus 410 G~sg~Di~~l~~~ 422 (489)
| +.+|.-.++..
T Consensus 214 G-d~RdAL~lLeq 225 (484)
T PRK14956 214 G-SVRDMLSFMEQ 225 (484)
T ss_pred C-hHHHHHHHHHH
Confidence 4 34444444433
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.9e-17 Score=176.46 Aligned_cols=191 Identities=19% Similarity=0.199 Sum_probs=137.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++++.+|+.+++
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~~-----------gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALDG-----------GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHhc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 34567889999999999999999988753 123467899999999999999999998864
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.+++++..+- ..-..++.+++.+. .....|++|||+|.|.. ..
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~-------------~A 135 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN-------------HA 135 (830)
T ss_pred ccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH-------------HH
Confidence 2344433221 11223444444433 23457999999998843 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.||+.|+. ....+.+|.+||+++.+.+.|+||| ..+.|..++.++..+.|+..+...+...+. .+..|++...
T Consensus 136 ~NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~ 211 (830)
T PRK07003 136 FNAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQ 211 (830)
T ss_pred HHHHHHHHHh---cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888873 3345778888999999999999999 669999999999999999988777665443 3566777776
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
|- .++.-.++.++.
T Consensus 212 Gs-mRdALsLLdQAi 225 (830)
T PRK07003 212 GS-MRDALSLTDQAI 225 (830)
T ss_pred CC-HHHHHHHHHHHH
Confidence 63 455555544444
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=170.16 Aligned_cols=178 Identities=17% Similarity=0.217 Sum_probs=126.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+..++++.+|++++|++.+++.|...+... ..++++||+||||||||++|+++|+.++.
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 345678889999999999999998876542 23467999999999999999999999864
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.++++.- ..-..++.+.+.+.. ....||+|||+|.+... .
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~------~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a 133 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASN------RGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------A 133 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCccc------CCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------H
Confidence 3555554321 112234444444332 23469999999988432 3
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~ 409 (489)
++.|+..++. .++.+++|++|+.+..+++++++|| ..+.|..++.++...+++..+...+...+ ..++.|++.+.
T Consensus 134 ~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~ 209 (472)
T PRK14962 134 FNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRAS 209 (472)
T ss_pred HHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 5667777763 2334666767777889999999999 57999999999999999998866554433 23556666555
Q ss_pred C
Q 011305 410 G 410 (489)
Q Consensus 410 G 410 (489)
|
T Consensus 210 G 210 (472)
T PRK14962 210 G 210 (472)
T ss_pred C
Confidence 4
|
|
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.3e-16 Score=152.47 Aligned_cols=190 Identities=19% Similarity=0.203 Sum_probs=140.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
-.+..|++.+|++++|++|.-++.....+. ...-|+||+||||.||||||+.+|+++|..+-..++.-+...
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~- 91 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP- 91 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh-
Confidence 456789999999999999998887755433 234689999999999999999999999999888877665322
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---------------CCCc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---------------SDEL 347 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~---------------~~~~ 347 (489)
|+ +-.++... ....|||||||+++.+. +..-|+-.|+.+.- .-.+
T Consensus 92 -gD----laaiLt~L--e~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 92 -GD----LAAILTNL--EEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -hh----HHHHHhcC--CcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 22 22223222 22379999999998654 33345555553321 1134
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~ 421 (489)
.-+|++|.+...+...+++||.....+..++.++..+|+...........+. ...++|+++.| +++-...|++
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLr 225 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLR 225 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHH
Confidence 6678999999999999999999999999999999999999988777666544 35678888876 4443333443
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=172.22 Aligned_cols=223 Identities=41% Similarity=0.597 Sum_probs=194.3
Q ss_pred ccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEE
Q 011305 229 IKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 229 l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
+.+++.+... ..++++++++||||+|||+++++++.+ +..+..+++.+..+++.|..+.....+|..+....|+++++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 4455555544 677899999999999999999999999 76668889999999999999999999999999999999999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHH
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAM 385 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~I 385 (489)
||+|.+.+.+.. ......+.+...++..+++.. ... +++++.+|.+..+++++++ ||+..+.++.|+...+.+|
T Consensus 83 d~~~~~~~~~~~--~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei 158 (494)
T COG0464 83 DEIDALAPKRSS--DQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEI 158 (494)
T ss_pred chhhhcccCccc--cccchhhHHHHHHHHhccccc-CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHH
Confidence 999999998876 344556788999999999998 666 8899999999999999988 9999999999999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 386 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 386 L~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+...........+.+.+.++..+.|++++++..+++++...+++|.. .. ......++.+|+.++++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~------~~------~~~~~~~~~~~~~~~l~~~ 226 (494)
T COG0464 159 LQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI------DL------VGEYIGVTEDDFEEALKKV 226 (494)
T ss_pred HHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh------cc------CcccccccHHHHHHHHHhc
Confidence 99998888877788999999999999999999999999999888754 00 1111238999999999999
Q ss_pred CCC
Q 011305 466 RPS 468 (489)
Q Consensus 466 ~ps 468 (489)
.|+
T Consensus 227 ~~~ 229 (494)
T COG0464 227 LPS 229 (494)
T ss_pred Ccc
Confidence 886
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.5e-16 Score=171.20 Aligned_cols=191 Identities=19% Similarity=0.185 Sum_probs=136.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 445678899999999999999999888542 234678999999999999999999998642
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++++++++- ..-..++.+.+.+. .....|++|||+|.+... .
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a 135 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------S 135 (509)
T ss_pred CCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------H
Confidence 455554321 11223444444332 233469999999998532 4
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|+..++.. +..+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..+++.+.
T Consensus 136 ~naLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~ 211 (509)
T PRK14958 136 FNALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAAN 211 (509)
T ss_pred HHHHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 57788888743 344667777788888988999999 668899999998888888888776655433 3556666665
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
| +.+++..++..+.
T Consensus 212 G-slR~al~lLdq~i 225 (509)
T PRK14958 212 G-SVRDALSLLDQSI 225 (509)
T ss_pred C-cHHHHHHHHHHHH
Confidence 4 5666666665443
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=163.20 Aligned_cols=190 Identities=16% Similarity=0.192 Sum_probs=131.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.++..+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345677889999999999999999877541 234678999999999999999999998532
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.+++++ ...-..++.+.+.+.. ....|++|||+|.+.. ..
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~-------------~a 135 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR-------------HS 135 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH-------------HH
Confidence 22222211 0122334555544332 2246999999998842 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~ 409 (489)
.+.|+..++. .+..+.+|.+|++++.+.+++++|+ ..+.++.|+.++...+++..+...+...+ ..++.++..+.
T Consensus 136 ~naLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~ 211 (363)
T PRK14961 136 FNALLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAH 211 (363)
T ss_pred HHHHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 4668888763 3334566667788888999999999 66899999999999999998877664433 33555666665
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
| +.+++..++..+
T Consensus 212 G-~~R~al~~l~~~ 224 (363)
T PRK14961 212 G-SMRDALNLLEHA 224 (363)
T ss_pred C-CHHHHHHHHHHH
Confidence 4 555555544443
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.7e-16 Score=169.26 Aligned_cols=189 Identities=19% Similarity=0.201 Sum_probs=135.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT----------- 268 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~----------- 268 (489)
.+++++.+|++|+|++.+++.|..++.. ...++.+||+||+|+|||++|+++|+.+++
T Consensus 6 arKyRPktFddVIGQe~vv~~L~~aI~~-----------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~ 74 (702)
T PRK14960 6 ARKYRPRNFNELVGQNHVSRALSSALER-----------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEV 74 (702)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCcc
Confidence 4567788999999999999999988753 123478899999999999999999999865
Q ss_pred -------------cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 269 -------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 269 -------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
.++.+++++- ..-..++.+...+. ..+..|++|||+|.|... ..
T Consensus 75 C~sC~~I~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~ 135 (702)
T PRK14960 75 CATCKAVNEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SF 135 (702)
T ss_pred CHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HH
Confidence 3445554321 11223444444332 234579999999988432 45
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. ....+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..+++.+.|
T Consensus 136 NALLKtLEE---PP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G 211 (702)
T PRK14960 136 NALLKTLEE---PPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG 211 (702)
T ss_pred HHHHHHHhc---CCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888873 2344567777888888999999999 669999999999999999988777665443 35667766654
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.+++..++..+
T Consensus 212 -dLRdALnLLDQa 223 (702)
T PRK14960 212 -SLRDALSLTDQA 223 (702)
T ss_pred -CHHHHHHHHHHH
Confidence 555555555443
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-16 Score=166.62 Aligned_cols=193 Identities=23% Similarity=0.277 Sum_probs=138.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+..++.+.++++|+|++.+++.|++++..+.. ..+++++||+||||||||++|+++|++++.+++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~--------g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWLK--------GKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 55678888999999999999999999866431 1336899999999999999999999999999999998875
Q ss_pred hhhhccchHHHHHHHHHHHHh------cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 011305 279 VSKWRGDSEKLIKVLFELARH------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIa 352 (489)
... ..+..+...+.. ..+.||+|||+|.+....+ +..+..|+..++. .. ..+|+
T Consensus 76 r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~---~~--~~iIl 135 (482)
T PRK04195 76 RTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKK---AK--QPIIL 135 (482)
T ss_pred ccH------HHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHc---CC--CCEEE
Confidence 321 223333332221 2467999999999865311 1234556666652 12 23566
Q ss_pred EeCCCCcccH-HHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 353 ATNLPWELDA-AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 353 tTn~p~~Ld~-al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
++|.+..+.. .+++|+ ..+.|+.|+.++...+++..+...+...+ ..++.|++.+.| |++.+++...
T Consensus 136 i~n~~~~~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~G----DlR~ain~Lq 204 (482)
T PRK04195 136 TANDPYDPSLRELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGG----DLRSAINDLQ 204 (482)
T ss_pred eccCccccchhhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHH
Confidence 7899888877 677777 67999999999999999999877666543 336667776554 6666555443
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-16 Score=173.32 Aligned_cols=238 Identities=21% Similarity=0.290 Sum_probs=163.3
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------- 266 (489)
...+.+......-.++.++|.+...+.+.+.+.. ....++||+||||||||++|+++|...
T Consensus 171 ~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~ 238 (758)
T PRK11034 171 NFTTNLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPE 238 (758)
T ss_pred HHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 3445555555566788999999999998886644 123678999999999999999999875
Q ss_pred ---CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 ---~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+..++.++...+. .+|.|+.+..++.++..+....++||||||+|.+.+.........+ +.+.|...+.
T Consensus 239 ~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d----~~nlLkp~L~-- 312 (758)
T PRK11034 239 VMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD----AANLIKPLLS-- 312 (758)
T ss_pred hhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHH----HHHHHHHHHh--
Confidence 4566676666655 4678899999999999888888899999999999876532211111 2222222221
Q ss_pred ccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHH-----HHHHhcC-
Q 011305 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDL-----LVERTEG- 410 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~-----La~~t~G- 410 (489)
...+.+|++|+.++ ..|+++.|||. .+.++.|+.+++..||+.+...+....++++.. ++..+..
T Consensus 313 ---~g~i~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ry 388 (758)
T PRK11034 313 ---SGKIRVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_pred ---CCCeEEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhcc
Confidence 23478898888764 47999999995 699999999999999998876655554444322 3332333
Q ss_pred ----CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 411 ----YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 411 ----~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+.|...-.++.+|+... |+... .. ....|+.+|+.+.+++..-
T Consensus 389 i~~r~lPdKaidlldea~a~~--~~~~~----------~~--~~~~v~~~~i~~v~~~~tg 435 (758)
T PRK11034 389 INDRHLPDKAIDVIDEAGARA--RLMPV----------SK--RKKTVNVADIESVVARIAR 435 (758)
T ss_pred ccCccChHHHHHHHHHHHHhh--ccCcc----------cc--cccccChhhHHHHHHHHhC
Confidence 34455666777666421 11000 00 0124888999998887753
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2e-15 Score=165.27 Aligned_cols=189 Identities=22% Similarity=0.249 Sum_probs=133.7
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.+++.
T Consensus 7 a~KyRP~~f~divGQe~vv~~L~~~l~~~-----------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~ 75 (647)
T PRK07994 7 ARKWRPQTFAEVVGQEHVLTALANALDLG-----------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGE 75 (647)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCC
Confidence 34567889999999999999999887541 234568999999999999999999998652
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++.+- ..-..++.+...+. .....|++|||+|.|.. ..+
T Consensus 76 C~~C~~i~~g~~~D~ieidaas~------~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~ 136 (647)
T PRK07994 76 CDNCREIEQGRFVDLIEIDAASR------TKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSF 136 (647)
T ss_pred CHHHHHHHcCCCCCceeeccccc------CCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHH
Confidence 334443320 01122344333322 23457999999998843 356
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
+.||+.|+. .+..+.+|.+|+++..+.+.++||| ..+.|..++.++-...|+..+...+...+ ..+..|++.+.|
T Consensus 137 NALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G 212 (647)
T PRK07994 137 NALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG 212 (647)
T ss_pred HHHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 889999873 3445667777888999999999998 77999999999999999988866555433 235566666555
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.++.-.++..+
T Consensus 213 -s~R~Al~lldqa 224 (647)
T PRK07994 213 -SMRDALSLTDQA 224 (647)
T ss_pred -CHHHHHHHHHHH
Confidence 455555555443
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.5e-16 Score=170.79 Aligned_cols=191 Identities=20% Similarity=0.228 Sum_probs=133.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++|+|++.+++.|+.++... ..++.+||+||||||||++|+++|+.+++.
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~~~-----------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALTQQ-----------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 345677889999999999999999887542 234567999999999999999999998653
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.+++.+- ..-..++.+...+. .....|++|||+|.|. ...
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~------~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT-------------~eA 135 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASR------TKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS-------------RSS 135 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------HHH
Confidence 122222110 11122344443332 2334699999999984 336
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.||..|+. .+..+.+|.+|+.+..+.+.+++|| ..+.|..++.++....|+..+...+...+. .+..|++.+.
T Consensus 136 qNALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~ 211 (944)
T PRK14949 136 FNALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAAN 211 (944)
T ss_pred HHHHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6889999873 3344666667888888999999999 669999999999999888887665444332 3566666665
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
| +.+++-.++..+.
T Consensus 212 G-d~R~ALnLLdQal 225 (944)
T PRK14949 212 G-SMRDALSLTDQAI 225 (944)
T ss_pred C-CHHHHHHHHHHHH
Confidence 4 5566666665544
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.8e-16 Score=163.91 Aligned_cols=189 Identities=20% Similarity=0.225 Sum_probs=138.2
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------- 267 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~------------- 267 (489)
+++.+.+|+||+|++.+++.|+..+.. ...++++||+||+|+|||++|+.+|+.++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~~-----------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C 73 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFTL-----------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTC 73 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcccc
Confidence 467788999999999999999987654 23457899999999999999999999763
Q ss_pred -----------CcEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHH
Q 011305 268 -----------TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (489)
Q Consensus 268 -----------~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 332 (489)
..++++++++- ..-..++.+.+.+.. ..+.|++|||+|.+.. ..++
T Consensus 74 ~~C~~i~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~N 134 (491)
T PRK14964 74 HNCISIKNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAFN 134 (491)
T ss_pred HHHHHHhccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHHH
Confidence 23456665432 122345555555432 2357999999988743 2467
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 011305 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 411 (489)
Q Consensus 333 ~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~ 411 (489)
.|+..++. .+..+.+|.+|+.+..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..+++.+.|
T Consensus 135 aLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G- 209 (491)
T PRK14964 135 ALLKTLEE---PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG- 209 (491)
T ss_pred HHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 88888874 3344667777788888999999999 668999999999999999988877765443 35666776654
Q ss_pred cHHHHHHHHHHHH
Q 011305 412 SGSDIRLVSKEAA 424 (489)
Q Consensus 412 sg~Di~~l~~~A~ 424 (489)
+.+++..++..+.
T Consensus 210 slR~alslLdqli 222 (491)
T PRK14964 210 SMRNALFLLEQAA 222 (491)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665544
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-15 Score=160.25 Aligned_cols=154 Identities=24% Similarity=0.376 Sum_probs=113.2
Q ss_pred cCCCCCCCccccCcHHHHHH---HHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 201 RGSPDVKWESIKGLENAKRL---LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~---L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+..++.++++++|++.+... +...+.. ....+++|+||||||||++|+++|+.++.+++.+++..
T Consensus 4 ~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~ 71 (413)
T PRK13342 4 ERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVT 71 (413)
T ss_pred hhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccc
Confidence 34567789999999999666 7776643 12358999999999999999999999999999998764
Q ss_pred hhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 278 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
. ....++.++..+. .....||||||+|.+... .++.|+..++. . .+++|++
T Consensus 72 ~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~----~-~iilI~a 126 (413)
T PRK13342 72 S-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVED----G-TITLIGA 126 (413)
T ss_pred c-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhc----C-cEEEEEe
Confidence 3 1223444444442 224589999999988532 33556666652 2 2455554
Q ss_pred e-CCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC
Q 011305 354 T-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 354 T-n~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
| ..+ ..+++++++|| ..+.++.++.++...+++..+..
T Consensus 127 tt~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 127 TTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred CCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 4 333 57899999999 67899999999999999987754
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=166.33 Aligned_cols=191 Identities=19% Similarity=0.208 Sum_probs=136.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.++++
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 345678889999999999999999987641 335789999999999999999999987543
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.++..+ ......++.++..+. .....|++|||+|.+.. ..
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A 135 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SA 135 (709)
T ss_pred ccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HH
Confidence 22232211 112234555555432 12347999999987732 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|++.|+. ....+.+|.+|+++..+...+++|| ..+.|+.++.++....|+..+...+...+. .+..|++.+.
T Consensus 136 ~NALLKtLEE---Pp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~ 211 (709)
T PRK08691 136 FNAMLKTLEE---PPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAA 211 (709)
T ss_pred HHHHHHHHHh---CCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 5678888873 2344667778888999999999999 668899999999999999998877665443 3566666664
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
.+.+++..++..+.
T Consensus 212 -GslRdAlnLLDqai 225 (709)
T PRK08691 212 -GSMRDALSLLDQAI 225 (709)
T ss_pred -CCHHHHHHHHHHHH
Confidence 45566666665444
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.5e-15 Score=161.17 Aligned_cols=191 Identities=20% Similarity=0.241 Sum_probs=138.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++++|++.+++.|+..+.. ...++++||+||||||||++|+++|+.++..
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~~-----------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTILN-----------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 44567888999999999999999886644 1235789999999999999999999998642
Q ss_pred -------------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHH
Q 011305 270 -------------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEA 326 (489)
Q Consensus 270 -------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~ 326 (489)
++++++.+ ......++.+++.+.. ....|++|||+|.+..
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~----------- 142 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK----------- 142 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH-----------
Confidence 22222211 1123455666665543 2346999999998842
Q ss_pred HHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHH
Q 011305 327 SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLV 405 (489)
Q Consensus 327 ~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La 405 (489)
..++.|+..++. .+..+++|.+|+.++.+.+++++|+ ..+.+..++.++...+++..+...+...+. .+..++
T Consensus 143 --~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia 216 (507)
T PRK06645 143 --GAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIA 216 (507)
T ss_pred --HHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 245678887763 3445667777888889999999999 568999999999999999999877665443 356677
Q ss_pred HHhcCCcHHHHHHHHHHHH
Q 011305 406 ERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 406 ~~t~G~sg~Di~~l~~~A~ 424 (489)
..+.| +.+++-.++..+.
T Consensus 217 ~~s~G-slR~al~~Ldkai 234 (507)
T PRK06645 217 YKSEG-SARDAVSILDQAA 234 (507)
T ss_pred HHcCC-CHHHHHHHHHHHH
Confidence 76665 6666666665554
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=157.21 Aligned_cols=187 Identities=16% Similarity=0.200 Sum_probs=128.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 269 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------------- 269 (489)
.|++|+|++.+++.|+..+.....++..+. ...++++||+||||+|||++|+++|+.+...
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999987554332222 2346789999999999999999999987443
Q ss_pred ------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 270 ------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 270 ------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
+..+.... . .-.-..++.+++.+.. ....|++|||+|.+... ..+.|++.|+
T Consensus 81 ~~~hpD~~~i~~~~---~--~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE 142 (394)
T PRK07940 81 AGTHPDVRVVAPEG---L--SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE 142 (394)
T ss_pred cCCCCCEEEecccc---c--cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence 11222111 0 0122345666665543 23469999999999533 3467888887
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 419 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l 419 (489)
.. ... +++|.+|++++.+.++++||+ ..+.|+.|+.++..+++.... +.. ......++..+.|..+..+..+
T Consensus 143 ep--~~~-~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 143 EP--PPR-TVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLA 214 (394)
T ss_pred cC--CCC-CeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHh
Confidence 32 233 445556666899999999999 679999999999888876422 222 2335567888888887666554
Q ss_pred HH
Q 011305 420 SK 421 (489)
Q Consensus 420 ~~ 421 (489)
..
T Consensus 215 ~~ 216 (394)
T PRK07940 215 TD 216 (394)
T ss_pred cC
Confidence 43
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2e-15 Score=163.44 Aligned_cols=191 Identities=19% Similarity=0.221 Sum_probs=134.1
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.|...+... ..++.+||+||||+|||++|+.+|+.+++.
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345667889999999999999999887541 234678999999999999999999998642
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.++++. ...-..++.+...+.. ....|++|||+|.+.. ..
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~-------------~a 135 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK-------------SA 135 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH-------------HH
Confidence 22333221 1122345555555432 2346999999998843 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|+..++. .+..+.+|.+|+++..+.+.+++|+ ..+.|+.++.++-...+...+...+...+. .+..+++.+.
T Consensus 136 ~naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~ 211 (527)
T PRK14969 136 FNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAA 211 (527)
T ss_pred HHHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888874 3345667777788888888899999 779999999999998888888766554333 3455666555
Q ss_pred CCcHHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAA 424 (489)
Q Consensus 410 G~sg~Di~~l~~~A~ 424 (489)
| +.+++..++..+.
T Consensus 212 G-slr~al~lldqai 225 (527)
T PRK14969 212 G-SMRDALSLLDQAI 225 (527)
T ss_pred C-CHHHHHHHHHHHH
Confidence 3 5556655555443
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.3e-15 Score=151.63 Aligned_cols=184 Identities=18% Similarity=0.195 Sum_probs=128.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+.+++.+.+|++++|++++++.|+.++... ...++||+||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 456778899999999999999998876431 124799999999999999999999983 346677
Q ss_pred eccchhhhhccchHHHHHHHHHH-HH------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 274 SASSVVSKWRGDSEKLIKVLFEL-AR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~-A~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
++++..+. ..++..... +. ...+.|++|||+|.+... .++.|+..++... .
T Consensus 71 n~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~---~ 128 (319)
T PLN03025 71 NASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYS---N 128 (319)
T ss_pred cccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhccc---C
Confidence 76654221 122222221 11 123579999999998543 2455666665332 2
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
.+.+|.+||.++.+.+++++|+ ..+.|+.|+.++....++..+...+...+ ..++.++..+.| |++.+++
T Consensus 129 ~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g----DlR~aln 199 (319)
T PLN03025 129 TTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG----DMRQALN 199 (319)
T ss_pred CceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHH
Confidence 2446668888888999999999 57999999999999999998877665533 235556665543 5544444
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-15 Score=164.65 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=134.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+++|+.+++
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 345678889999999999999999987542 23467899999999999999999999864
Q ss_pred -------------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhH
Q 011305 269 -------------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 269 -------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
.++.+++.+- ..-..++.+.+.+.. ....|++|||+|.|...
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~--------- 139 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT--------- 139 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH---------
Confidence 1333333210 112234555544332 22469999999998533
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLL 404 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~L 404 (489)
..+.|+..++. .+..+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..|
T Consensus 140 ----a~NaLLKtLEE---PP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~L 211 (618)
T PRK14951 140 ----AFNAMLKTLEE---PPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLL 211 (618)
T ss_pred ----HHHHHHHhccc---CCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 35678888863 3444666777788888888999999 779999999999999999888776665443 35667
Q ss_pred HHHhcCCcHHHHHHHHHH
Q 011305 405 VERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 405 a~~t~G~sg~Di~~l~~~ 422 (489)
++.+.| +.+++..++..
T Consensus 212 a~~s~G-slR~al~lLdq 228 (618)
T PRK14951 212 ARAARG-SMRDALSLTDQ 228 (618)
T ss_pred HHHcCC-CHHHHHHHHHH
Confidence 776665 55555555443
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-15 Score=151.62 Aligned_cols=191 Identities=20% Similarity=0.245 Sum_probs=127.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+.+++.+.+|++++|++.+++.|...+... ...++||+||||||||++|+++++++. .+++++
T Consensus 5 w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i 72 (337)
T PRK12402 5 WTEKYRPALLEDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEF 72 (337)
T ss_pred hHHhhCCCcHHHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEe
Confidence 455677888999999999999999877431 123799999999999999999999883 457888
Q ss_pred eccchhhhhc-------------cc-------hHHHHHHHHHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHH
Q 011305 274 SASSVVSKWR-------------GD-------SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASR 328 (489)
Q Consensus 274 ~~s~l~~~~~-------------g~-------~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~ 328 (489)
+++++..... +. ....++.+...... ..+.+|+|||+|.+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~------------ 140 (337)
T PRK12402 73 NVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED------------ 140 (337)
T ss_pred chhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH------------
Confidence 8876542210 00 11223333323222 23469999999987432
Q ss_pred HHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHH
Q 011305 329 RLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVER 407 (489)
Q Consensus 329 ~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~ 407 (489)
..+.|...++... .. ..+|.+++.+..+.+.+.+|+ ..+.+++|+.++...+++..+...+...+ ..++.+++.
T Consensus 141 -~~~~L~~~le~~~--~~-~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~ 215 (337)
T PRK12402 141 -AQQALRRIMEQYS--RT-CRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYY 215 (337)
T ss_pred -HHHHHHHHHHhcc--CC-CeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 2234555555332 22 334556666777788899998 56899999999999999998877665533 235566665
Q ss_pred hcCCcHHHHHHHHHH
Q 011305 408 TEGYSGSDIRLVSKE 422 (489)
Q Consensus 408 t~G~sg~Di~~l~~~ 422 (489)
+. +|++.+++.
T Consensus 216 ~~----gdlr~l~~~ 226 (337)
T PRK12402 216 AG----GDLRKAILT 226 (337)
T ss_pred cC----CCHHHHHHH
Confidence 53 355554443
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.6e-15 Score=166.99 Aligned_cols=192 Identities=20% Similarity=0.159 Sum_probs=132.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+.. ...++.+||+||+|||||++|+.+|+.+++.
T Consensus 6 ~~KyRP~~f~eiiGqe~v~~~L~~~i~~-----------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~ 74 (824)
T PRK07764 6 YRRYRPATFAEVIGQEHVTEPLSTALDS-----------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGE 74 (824)
T ss_pred HHHhCCCCHHHhcCcHHHHHHHHHHHHh-----------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcc
Confidence 4567888999999999999999988754 1233568999999999999999999998641
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
++.++..+. ..+.+.......++.........|+||||+|.|.. ...+.
T Consensus 75 C~sC~~~~~g~~~~~dv~eidaas~--~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~Na 139 (824)
T PRK07764 75 CDSCVALAPGGPGSLDVTEIDAASH--GGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNA 139 (824)
T ss_pred cHHHHHHHcCCCCCCcEEEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH-------------HHHHH
Confidence 233333211 01111222222222222234557999999999853 24678
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCc
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYS 412 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~s 412 (489)
||+.|+.. ...+++|++|++++.|.+.|++|+ ..+.|..++.++...+|+..+...+...+.+ +..++..+.| +
T Consensus 140 LLK~LEEp---P~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-d 214 (824)
T PRK07764 140 LLKIVEEP---PEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-S 214 (824)
T ss_pred HHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 89988743 344666777788888999999999 6689999999999999999887766654433 4555555554 5
Q ss_pred HHHHHHHHHH
Q 011305 413 GSDIRLVSKE 422 (489)
Q Consensus 413 g~Di~~l~~~ 422 (489)
.+++..+++.
T Consensus 215 lR~Al~eLEK 224 (824)
T PRK07764 215 VRDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHHH
Confidence 5555554444
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-15 Score=160.64 Aligned_cols=190 Identities=19% Similarity=0.166 Sum_probs=131.8
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|||||++|+++|+.+++.
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~~~-----------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALDAG-----------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 35678889999999999999999987541 234568999999999999999999988631
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRR 329 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~ 329 (489)
++.++++... .-..++.+.+.+. .....|++|||+|.+.. .
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~-------------~ 133 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT-------------A 133 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH-------------H
Confidence 3333332110 1122333333322 23346999999998843 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh
Q 011305 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT 408 (489)
Q Consensus 330 i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t 408 (489)
.++.||..|+. .+..+++|.+|+.++.+.+++++|+ ..+.|..++.++..+.++.++...+...+.+ +..++...
T Consensus 134 A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s 209 (584)
T PRK14952 134 GFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 56788888873 3345667777788899999999998 6699999999999999998887776554433 34444433
Q ss_pred cCCcHHHHHHHHHHHH
Q 011305 409 EGYSGSDIRLVSKEAA 424 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~ 424 (489)
|.+.+++..++....
T Consensus 210 -~GdlR~aln~Ldql~ 224 (584)
T PRK14952 210 -GGSPRDTLSVLDQLL 224 (584)
T ss_pred -CCCHHHHHHHHHHHH
Confidence 445555555555443
|
|
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-14 Score=142.57 Aligned_cols=187 Identities=21% Similarity=0.252 Sum_probs=135.1
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------cE
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------TF 270 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~------~~ 270 (489)
+.+.+++.+.+|+++.|++.+++.|+..+.. ....++|||||||||||+.|+++|+++.. .+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 3456677888999999999999999988754 12358999999999999999999999965 24
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHh---------cC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARH---------HA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~---------~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
...++++..+..++ ..+++. |..... .+ +.|++|||+|.+..+ .+++|...|+.
T Consensus 92 l~lnaSderGisvv--r~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~ 155 (346)
T KOG0989|consen 92 LELNASDERGISVV--REKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMED 155 (346)
T ss_pred hhhcccccccccch--hhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhc
Confidence 55566665544322 112221 222211 11 269999999999644 56778888885
Q ss_pred CccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHH
Q 011305 341 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLV 419 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l 419 (489)
.. ..+.+|..||.++.+...+.||+.+ +.|+....+.....|+....+.+...+.+ ++.+++.++| |++.+
T Consensus 156 ~s---~~trFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~G----dLR~A 227 (346)
T KOG0989|consen 156 FS---RTTRFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDG----DLRRA 227 (346)
T ss_pred cc---cceEEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC----cHHHH
Confidence 43 3356777899999999999999965 77777777777888888888888876654 5667776655 55543
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=153.46 Aligned_cols=187 Identities=21% Similarity=0.249 Sum_probs=130.5
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++++.+|++++|++.+++.+.+.+.. ...++.+||+||||+|||++|+++++.+..+
T Consensus 5 ~~~~rp~~~~~iig~~~~~~~l~~~~~~-----------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~ 73 (355)
T TIGR02397 5 ARKYRPQTFEDVIGQEHIVQTLKNAIKN-----------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNE 73 (355)
T ss_pred HHHhCCCcHhhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 3456788999999999999999987754 1234679999999999999999999987432
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++.+ ......++.++..+... ...|++|||+|.+.. ...
T Consensus 74 c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~-------------~~~ 134 (355)
T TIGR02397 74 CESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK-------------SAF 134 (355)
T ss_pred CHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH-------------HHH
Confidence 33333321 11223455666655432 235999999998742 235
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
+.|+..++. .+..+++|.+|++++.+.+++++|+ ..+.++.|+.++...+++..+...+...+ ..+..+++.+.|
T Consensus 135 ~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 210 (355)
T TIGR02397 135 NALLKTLEE---PPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG 210 (355)
T ss_pred HHHHHHHhC---CccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 667787764 2334666777888888889999999 56899999999999999998877665433 234556665554
Q ss_pred CcHHHHHHHHH
Q 011305 411 YSGSDIRLVSK 421 (489)
Q Consensus 411 ~sg~Di~~l~~ 421 (489)
+.+.+...++
T Consensus 211 -~~~~a~~~le 220 (355)
T TIGR02397 211 -SLRDALSLLD 220 (355)
T ss_pred -ChHHHHHHHH
Confidence 4444444333
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=159.73 Aligned_cols=190 Identities=16% Similarity=0.186 Sum_probs=129.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++++.+|++++|++.+++.|...+... ..++.+||+||+|+|||++|+.+|+.++.
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 345667889999999999999999877541 23456899999999999999999998853
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.+++..- . .-..++.+.+.+. .....|++|||+|.+.. ..
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~----~--gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~-------------~a 135 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASR----T--GVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK-------------QS 135 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccc----c--CHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH-------------HH
Confidence 2333433211 0 1122333333332 23456999999998843 25
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.|+..++. .++.+.+|.+|+++..+.+.+++|+ ..+.|..++.++....++..+...+...+. .+..++..+.
T Consensus 136 ~naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~ 211 (546)
T PRK14957 136 FNALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAK 211 (546)
T ss_pred HHHHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 6788888873 3344556667777888888899999 779999999999988888887766554333 3455665554
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
.+.+++-.++..+
T Consensus 212 -GdlR~alnlLek~ 224 (546)
T PRK14957 212 -GSLRDALSLLDQA 224 (546)
T ss_pred -CCHHHHHHHHHHH
Confidence 3445554444443
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.6e-15 Score=160.32 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=127.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+..++.+.+|++|+|++.+++.|+..+... ..++.+||+||||||||++|+++|+.+...
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 345678899999999999999999887641 234567999999999999999999988531
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++++- ..-..++.+...+. ...+.|++|||+|.+. ...+
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~------~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------~~a~ 133 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASN------NSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------KSAF 133 (504)
T ss_pred ChhhHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhccccCCCeEEEEECccccC-------------HHHH
Confidence 444444311 12233444433332 2345799999998763 2346
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. ....+++|.+|+.+..+.+.+.+|+. .+.|+.|+.++....++..+...+...+. .+..++..+.|
T Consensus 134 naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G 209 (504)
T PRK14963 134 NALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG 209 (504)
T ss_pred HHHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 678888763 33346667778888999999999994 69999999999999999988776665333 35556665554
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=162.25 Aligned_cols=190 Identities=22% Similarity=0.255 Sum_probs=135.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++.+.+|++++|++.+++.|+..+... ..++.+||+||+|||||++|+.+|+.+++
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345678889999999999999999887641 23467999999999999999999998853
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.++++. +..-..++.+...+.. ....|++|||+|.|.. ..
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~-------------~a 135 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST-------------GA 135 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence 234444321 1223345555555442 2346999999998842 24
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
.+.|+..++. .+..+++|.+|+.++.+.+.+++|+. .+.|+.|+.++....++..+...+...+. .+..++..+.
T Consensus 136 ~naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~ 211 (559)
T PRK05563 136 FNALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAE 211 (559)
T ss_pred HHHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5778888873 33446666677788999999999994 58899999999999999988777665443 3555666665
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
| +.++...++..+
T Consensus 212 G-~~R~al~~Ldq~ 224 (559)
T PRK05563 212 G-GMRDALSILDQA 224 (559)
T ss_pred C-CHHHHHHHHHHH
Confidence 4 555555544433
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-14 Score=147.22 Aligned_cols=162 Identities=17% Similarity=0.127 Sum_probs=115.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.+++++.+|++++|++.+++.++..+.. ...++.+||+||||+|||++|++++++++.+++.+++++
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~- 78 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVKK-----------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD- 78 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHhc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-
Confidence 45678889999999999999999988753 123456777999999999999999999999999999876
Q ss_pred hhhhccchHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+. .......+........ ...+.||+|||+|.+... .....|...++.. ...+.+|++||.+
T Consensus 79 -~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~---~~~~~~Ilt~n~~ 141 (316)
T PHA02544 79 -CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAY---SKNCSFIITANNK 141 (316)
T ss_pred -cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH------------HHHHHHHHHHHhc---CCCceEEEEcCCh
Confidence 21 2222222222221111 124689999999987221 1123344445432 2335677899999
Q ss_pred CcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 358 WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 358 ~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
..+.+++++|| ..+.++.|+.+++..+++.++
T Consensus 142 ~~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~ 173 (316)
T PHA02544 142 NGIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMI 173 (316)
T ss_pred hhchHHHHhhc-eEEEeCCCCHHHHHHHHHHHH
Confidence 99999999999 468999999999988877543
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=160.32 Aligned_cols=181 Identities=17% Similarity=0.208 Sum_probs=125.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+..++.+.+|++|+|++.+++.|...+... .-.+.+||+||+|||||++|+.+|+.+...
T Consensus 6 la~KyRP~sf~dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg 74 (624)
T PRK14959 6 LTARYRPQTFAEVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCN 74 (624)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCc
Confidence 445678889999999999999999887541 223689999999999999999999998642
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHH-HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFEL-ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~-A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
++.+++..- ..+.... .+...+.. .......||+|||+|.+.. ..++.
T Consensus 75 ~C~sC~~i~~g~hpDv~eId~a~~--~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a~na 138 (624)
T PRK14959 75 TCEQCRKVTQGMHVDVVEIDGASN--RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EAFNA 138 (624)
T ss_pred ccHHHHHHhcCCCCceEEEecccc--cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCH-------------HHHHH
Confidence 444443211 1111111 12222221 1223447999999998843 24577
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
|+..++. ....+++|++|+.+..+.+.+++|+ ..+.|+.++.++...+|+..+...+...+. .++.+++.+.|
T Consensus 139 LLk~LEE---P~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 139 LLKTLEE---PPARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHhhc---cCCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 8888874 2334667778888888988999999 568999999999999999887666554332 35556665554
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.3e-15 Score=158.91 Aligned_cols=189 Identities=17% Similarity=0.203 Sum_probs=131.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+.+++++.+|++++|++.+++.|...+.. ...++++||+||+|+|||++|+++|+.+.+
T Consensus 6 ~~~KyRP~~F~dIIGQe~iv~~L~~aI~~-----------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg 74 (605)
T PRK05896 6 FYRKYRPHNFKQIIGQELIKKILVNAILN-----------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCN 74 (605)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 45567888999999999999999987743 123478999999999999999999998742
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.++++.. ..-..++.+...+.. ....|++|||+|.+... .
T Consensus 75 ~C~sCr~i~~~~h~DiieIdaas~------igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A 135 (605)
T PRK05896 75 SCSVCESINTNQSVDIVELDAASN------NGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------A 135 (605)
T ss_pred ccHHHHHHHcCCCCceEEeccccc------cCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------H
Confidence 2333433211 112234444443332 23469999999988422 3
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~ 409 (489)
.+.|+..++. .+..+++|.+|+.+..+.+++++|+ ..+.|+.|+.++....++..+...+...+ ..+..++..+.
T Consensus 136 ~NaLLKtLEE---Pp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~ 211 (605)
T PRK05896 136 WNALLKTLEE---PPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLAD 211 (605)
T ss_pred HHHHHHHHHh---CCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 5678888873 3334667777888899999999999 46999999999999999988876654433 23555666655
Q ss_pred CCcHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKE 422 (489)
Q Consensus 410 G~sg~Di~~l~~~ 422 (489)
| +.+++..+++.
T Consensus 212 G-dlR~AlnlLek 223 (605)
T PRK05896 212 G-SLRDGLSILDQ 223 (605)
T ss_pred C-cHHHHHHHHHH
Confidence 4 44444444443
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-14 Score=147.94 Aligned_cols=170 Identities=22% Similarity=0.261 Sum_probs=116.5
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEe
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNIS 274 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---------~~~i~v~ 274 (489)
+....++++|.++..+.|...+...+. ...+.+++|+||||||||++++++++++. ..+++++
T Consensus 10 ~~~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 10 PDYVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred CCCCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 344456899999999999988765332 12346799999999999999999998763 5788889
Q ss_pred ccchhhh----------hc--c--------chHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 275 ASSVVSK----------WR--G--------DSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 275 ~s~l~~~----------~~--g--------~~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
|....+. .. | ........++.... ...+.||+|||+|.+.... ..++..
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~----------~~~L~~ 151 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD----------DDLLYQ 151 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence 8654321 10 0 11223344444433 2446799999999997221 113344
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCC---cccHHHHhhcc-cccccCCCCHHHHHHHHHHhcC
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~---~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
|+...+.....+.++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+.
T Consensus 152 l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 152 LSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred HhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 4443221122335688888998885 47888989985 6789999999999999999875
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-15 Score=158.73 Aligned_cols=164 Identities=26% Similarity=0.255 Sum_probs=129.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh---------h
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---------S 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---------~ 280 (489)
|-.|++++|+++.|.+.-.....+ ..+.-+.|+||||+|||+|+++||+.++..|+.++...+. .
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRR 397 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRR 397 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccc
Confidence 568999999999998876443322 1224578999999999999999999999999999875543 2
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------ccCCCcE
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 348 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------------~~~~~~v 348 (489)
.|+|.....+-+-+..|....| +++|||||.+..+-... -.++||.-+|-- .-.-+.|
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 4788887787777888888886 89999999997663321 123455555411 1223569
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
++|+|+|..+.++.+|++|+ .+|.++-++.+|..+|-+.|+
T Consensus 468 mFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcce-eeeeecCCChHHHHHHHHHhc
Confidence 99999999999999999999 779999999999999999987
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.2e-15 Score=160.81 Aligned_cols=187 Identities=19% Similarity=0.194 Sum_probs=132.8
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|...+... ..++.+||+||+|+|||++|+++|+.++..
T Consensus 7 ~~k~RP~~f~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~ 75 (576)
T PRK14965 7 ARKYRPQTFSDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNV 75 (576)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCc
Confidence 45678889999999999999999887541 234678999999999999999999998532
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++++++.+- ..-..++.+...+.. ....|++|||+|.+... ..
T Consensus 76 c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~ 136 (576)
T PRK14965 76 CPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AF 136 (576)
T ss_pred cHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HH
Confidence 333433221 112334555544432 23469999999988432 45
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..|+. .+..+++|.+|+.++.+.+.+++|+ ..+.|..++.++....+...+...+...+. .+..++..+.|
T Consensus 137 naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G 212 (576)
T PRK14965 137 NALLKTLEE---PPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG 212 (576)
T ss_pred HHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 788888873 3345667778888999999999999 579999999999888888888776655433 35556666665
Q ss_pred CcHHHHHHHHH
Q 011305 411 YSGSDIRLVSK 421 (489)
Q Consensus 411 ~sg~Di~~l~~ 421 (489)
+.+++..++.
T Consensus 213 -~lr~al~~Ld 222 (576)
T PRK14965 213 -SMRDSLSTLD 222 (576)
T ss_pred -CHHHHHHHHH
Confidence 3344444443
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.3e-15 Score=168.06 Aligned_cols=195 Identities=21% Similarity=0.307 Sum_probs=139.9
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
..+.+.....+-++++++|++...+++.+.+.. ....+++|+||||||||++|+.+|+.+
T Consensus 173 ~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~ 240 (852)
T TIGR03345 173 YTTDLTAQAREGKIDPVLGRDDEIRQMIDILLR------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPA 240 (852)
T ss_pred HhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhc------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcc
Confidence 445555556677899999999987777665532 223689999999999999999999987
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+.+++.++.+.+. ..+.|+.+..++.++..+.. ..+.||||||++.+.+.+...+. .+ ..+.|...+.
T Consensus 241 l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~-~d----~~n~Lkp~l~-- 313 (852)
T TIGR03345 241 LRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ-GD----AANLLKPALA-- 313 (852)
T ss_pred ccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc-cc----HHHHhhHHhh--
Confidence 3557888887765 36889999999999998864 45789999999999876432111 11 1122333332
Q ss_pred ccCCCcEEEEEEeCCC-----CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCC
Q 011305 342 TQSDELVFVLAATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGY 411 (489)
Q Consensus 342 ~~~~~~viVIatTn~p-----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-----~~~dl~~La~~t~G~ 411 (489)
+ +.+.+|+||+.. ..+|++|.|||. .|.++.|+.+++..||+.+....... .+..+..++..+.+|
T Consensus 314 --~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 314 --R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred --C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 3 346788888753 348999999995 79999999999999987766443221 223356667777666
Q ss_pred c
Q 011305 412 S 412 (489)
Q Consensus 412 s 412 (489)
.
T Consensus 390 i 390 (852)
T TIGR03345 390 I 390 (852)
T ss_pred c
Confidence 4
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.4e-15 Score=154.14 Aligned_cols=220 Identities=21% Similarity=0.292 Sum_probs=139.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhc----ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhcc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFT----GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG 284 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~----~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g 284 (489)
.|+|++.+|+.|...+..+...-.... ....+..++||+||||||||++|+++|+.++.||+.++++.+.. .|+|
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG 151 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVG 151 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCccc
Confidence 389999999999877654322211100 11224578999999999999999999999999999999988753 5776
Q ss_pred ch-HHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhh-HHHHHHHHHHHHHhcCCc----------cCCCcE
Q 011305 285 DS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEH-EASRRLKTELLIQMDGLT----------QSDELV 348 (489)
Q Consensus 285 ~~-~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~-~~~~~i~~~LL~~ldg~~----------~~~~~v 348 (489)
.. +..+..++..+ ....++||||||+|.+...+....... .....+++.||+.|++.. ......
T Consensus 152 ~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~ 231 (412)
T PRK05342 152 EDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEF 231 (412)
T ss_pred chHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCe
Confidence 53 33444444322 234679999999999987633221111 112357889999998642 011224
Q ss_pred EEEEEeCCCC----------------------------------------------------cccHHHHhhcccccccCC
Q 011305 349 FVLAATNLPW----------------------------------------------------ELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 349 iVIatTn~p~----------------------------------------------------~Ld~al~rRf~~~i~~~~ 376 (489)
++|.|+|-.. .+.|+++.|++.++.|..
T Consensus 232 ~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~ 311 (412)
T PRK05342 232 IQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEE 311 (412)
T ss_pred EEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCC
Confidence 4555544300 035667778888899999
Q ss_pred CCHHHHHHHHHH----hc-------CCCCCCCC---CCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHH
Q 011305 377 PDTEARRAMFES----LL-------PSQTGEES---LPYDLLVER--TEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 377 Pd~~eR~~IL~~----~l-------~~~~~~~~---~dl~~La~~--t~G~sg~Di~~l~~~A~~~a~r 429 (489)
.+.++..+|+.. .+ ...+.... .-++.|++. ..++-.+.|+.+++......+.
T Consensus 312 L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~ 380 (412)
T PRK05342 312 LDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMF 380 (412)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHH
Confidence 999999888872 22 22222211 124556654 3455567777776666655444
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.4e-15 Score=161.30 Aligned_cols=195 Identities=18% Similarity=0.224 Sum_probs=133.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE---Eec
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN---ISA 275 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~---v~~ 275 (489)
+.+++++.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+.++-.. -.|
T Consensus 8 l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC 76 (725)
T PRK07133 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPC 76 (725)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCch
Confidence 445678899999999999999999988542 234678999999999999999999988543110 001
Q ss_pred c----------chh-hhhcc-chHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 276 S----------SVV-SKWRG-DSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 276 s----------~l~-~~~~g-~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
. ++. ....+ .....++.+.+.+.. ....|++|||+|.+... ..+.|+..|+
T Consensus 77 ~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLE 143 (725)
T PRK07133 77 QECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLE 143 (725)
T ss_pred hHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhh
Confidence 0 000 00000 123345666655543 33469999999988432 4678888887
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~ 418 (489)
. .+..+++|.+|+.++.+.+.+++||. .+.|..++.++....++..+...+...+.+ +..++..+.| +.+++..
T Consensus 144 E---PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~Als 218 (725)
T PRK07133 144 E---PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALS 218 (725)
T ss_pred c---CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 3 34456677778889999999999994 799999999999999988877666544332 5556665554 4445444
Q ss_pred HHHH
Q 011305 419 VSKE 422 (489)
Q Consensus 419 l~~~ 422 (489)
++..
T Consensus 219 lLek 222 (725)
T PRK07133 219 IAEQ 222 (725)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.9e-15 Score=167.02 Aligned_cols=178 Identities=21% Similarity=0.314 Sum_probs=133.5
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
....+.....+-.+++++|.+...+.+.+.+.. ....+++|+||||||||++|+++|..+
T Consensus 164 ~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~ 231 (857)
T PRK10865 164 YTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG 231 (857)
T ss_pred HhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchh
Confidence 445555556677899999999987777776533 223689999999999999999999988
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+.+++.++.+.+. .+|.|+.+..++.+|..... ..++||||||+|.+.+.....+ ..+. .+.|...+
T Consensus 232 l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~----~~~lkp~l--- 303 (857)
T PRK10865 232 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDA----GNMLKPAL--- 303 (857)
T ss_pred hCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhH----HHHhcchh---
Confidence 7889999888876 46889999999999987543 5678999999999987643221 1221 22222222
Q ss_pred ccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC
Q 011305 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 395 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 395 (489)
.+ +.+.+|++|+..+ .+|+++.|||. .|.++.|+.+++..|++.+......
T Consensus 304 -~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 304 -AR-GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred -hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 23 3467888887765 48999999996 5889999999999999987755433
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=150.60 Aligned_cols=198 Identities=17% Similarity=0.274 Sum_probs=126.6
Q ss_pred CCCCCcc-ccCcHH--HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011305 204 PDVKWES-IKGLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (489)
Q Consensus 204 ~~~~~~d-liG~e~--~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~ 275 (489)
+..+|++ ++|.++ +...+.+.... + .....+++||||+|+|||+|++++++++ +..++++++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~----~------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAEN----P------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhC----c------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4567888 556443 33444443322 1 1223579999999999999999999987 577899998
Q ss_pred cchhhhhccchHH-HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 276 SSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 276 s~l~~~~~g~~~~-~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
.++...+...... ....+....+ .+.+|+|||+|.+.+... ....++..++.....+. .+||+++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~--~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~~~~~~~-~iiits~ 240 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYR--SVDLLLIDDIQFLAGKER-----------TQEEFFHTFNALHENGK-QIVLTSD 240 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--hCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-CEEEecC
Confidence 8876554322111 1112222222 357999999999864421 12334444443322332 3455555
Q ss_pred CCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011305 355 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 355 n~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~ 426 (489)
..|.. +++.+++||. ..+.++.|+.++|..|++..+...+...+. .++.||+...+ +.+++..+++.....
T Consensus 241 ~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~ 317 (405)
T TIGR00362 241 RPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAY 317 (405)
T ss_pred CCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence 55544 6688999996 468999999999999999999877665443 35667776664 667777766655433
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-14 Score=153.59 Aligned_cols=199 Identities=14% Similarity=0.239 Sum_probs=126.8
Q ss_pred CCCCCCcccc-CcH--HHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-GLE--NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G~e--~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.+..+|++++ |.. .+...++++...+ .....+++||||||+|||+|++++++++ +..+++++
T Consensus 116 ~~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~ 185 (450)
T PRK00149 116 NPKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT 185 (450)
T ss_pred CCCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3566788854 532 2555555544321 1223579999999999999999999988 56789999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.++...+..........-|.... ..+.+|+|||+|.+.++.. ....++..++.....+. .+||+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~dlLiiDDi~~l~~~~~-----------~~~~l~~~~n~l~~~~~-~iiits~ 252 (450)
T PRK00149 186 SEKFTNDFVNALRNNTMEEFKEKY-RSVDVLLIDDIQFLAGKER-----------TQEEFFHTFNALHEAGK-QIVLTSD 252 (450)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHH-hcCCEEEEehhhhhcCCHH-----------HHHHHHHHHHHHHHCCC-cEEEECC
Confidence 988766554332211111222211 2468999999999865421 12334444443333333 3455555
Q ss_pred CCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 355 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 355 n~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
..|.. +++++++||. ..+.+..|+.++|..|++..+...+...+. .++.||..+.| +.+++..++.....
T Consensus 253 ~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~ 328 (450)
T PRK00149 253 RPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIA 328 (450)
T ss_pred CCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHH
Confidence 55544 7789999995 478899999999999999998776554333 35666766654 56666666665443
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.6e-15 Score=157.06 Aligned_cols=166 Identities=23% Similarity=0.287 Sum_probs=129.6
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh---------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--------- 279 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~--------- 279 (489)
+|-.|++++|+++.|++.-...+. ...++-+.|+||||+|||+++++||+.+|..|+.++...+.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRG------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 467999999999999887643322 23346688999999999999999999999999999865443
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------ccCCCc
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDEL 347 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------------~~~~~~ 347 (489)
..|+|.....+-+.+.......| +++|||+|.+...-+ +. -.++||..+|-- .-.-..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~g~q--GD-------PasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGSGHQ--GD-------PASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCCCCC--CC-------hHHHHHHhcChhhccchhhhccccccchhh
Confidence 24778877777777777777776 899999999983222 11 123455555421 222356
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
|++|||+|..+.++++|++|+ +.|.++-+..+|...|-+.|+-
T Consensus 555 VLFicTAN~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 555 VLFICTANVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI 597 (906)
T ss_pred eEEEEeccccccCChhhhhhh-heeeccCccHHHHHHHHHHhhh
Confidence 999999999999999999999 6799999999999999999984
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-14 Score=143.26 Aligned_cols=157 Identities=22% Similarity=0.391 Sum_probs=106.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEec
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA 275 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~ 275 (489)
+.+...+.+++|.+|++.+..+ ...+...++. ..-.+++||||||||||+|||.|+.....+ |+++++
T Consensus 128 LaermRPktL~dyvGQ~hlv~q-~gllrs~ieq--------~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSA 198 (554)
T KOG2028|consen 128 LAERMRPKTLDDYVGQSHLVGQ-DGLLRSLIEQ--------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSA 198 (554)
T ss_pred hhhhcCcchHHHhcchhhhcCc-chHHHHHHHc--------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEec
Confidence 4445567789999999887655 2222222111 123579999999999999999999988666 777776
Q ss_pred cchhhhhccchHHHHHHHHHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
..- ..+.++.+|+.++. ....|||||||+.+... .++.||-.++ .+. |.+
T Consensus 199 t~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------QQD~fLP~VE----~G~-I~l 253 (554)
T KOG2028|consen 199 TNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------QQDTFLPHVE----NGD-ITL 253 (554)
T ss_pred ccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------hhhcccceec----cCc-eEE
Confidence 442 33567778877764 23479999999988543 2344554443 333 445
Q ss_pred E-EEeCCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 351 L-AATNLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 351 I-atTn~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
| +||.+| -.|+.++++|| .++.+...+.+.-..||.+.+
T Consensus 254 IGATTENPSFqln~aLlSRC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 254 IGATTENPSFQLNAALLSRC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred EecccCCCccchhHHHHhcc-ceeEeccCCHHHHHHHHHHHH
Confidence 5 555555 46999999999 556666777777778887744
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.2e-14 Score=161.44 Aligned_cols=227 Identities=17% Similarity=0.183 Sum_probs=151.2
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh---------
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS--------- 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~--------- 280 (489)
+..|++++|+.+.+++....... ...+..++|+||||+|||++++.+|+.++.+++.++.+....
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 48999999999998877533211 123357999999999999999999999999999998765421
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------------ccCCCcE
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------------TQSDELV 348 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------------~~~~~~v 348 (489)
.|.|.....+...+..+.... .||+|||+|.+....+. ...+.|+..+|.- ...-+.+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 345554445555555544444 48999999999765321 1245677776631 1123568
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-----CCCC---CCCC---HHHHHHH-hcCCcHHHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-----QTGE---ESLP---YDLLVER-TEGYSGSDI 416 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-----~~~~---~~~d---l~~La~~-t~G~sg~Di 416 (489)
++|+|+|.. .+++++++|| ..+.++.++.++..+|.+.++.. .+.. ...+ ++.+++. +..+-.+.+
T Consensus 467 ~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~L 544 (784)
T PRK10787 467 MFVATSNSM-NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSL 544 (784)
T ss_pred EEEEcCCCC-CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHH
Confidence 899999887 5999999999 57999999999999999998841 1111 1111 3444432 334445777
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 417 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 417 ~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+..++..+...+.+.+. .+. . ....|+.+++.+.|..-
T Consensus 545 eR~I~~i~r~~l~~~~~--~~~--------~-~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 545 EREISKLCRKAVKQLLL--DKS--------L-KHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHh--cCC--------C-ceeeecHHHHHHHhCCC
Confidence 77777655555544321 100 0 11248999999988733
|
|
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-14 Score=153.71 Aligned_cols=224 Identities=21% Similarity=0.221 Sum_probs=139.9
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISA 275 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~ 275 (489)
..-+.|.|.++..++|...+...+.. ..+...++|+|+||||||++++.+.+++ ...+++|+|
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkg-------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQ-------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhc-------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 33478999999999999988665431 1222345799999999999999998876 255789999
Q ss_pred cchhhhhc----------------c-chHHHHHHHHHHHHh--cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011305 276 SSVVSKWR----------------G-DSEKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (489)
Q Consensus 276 s~l~~~~~----------------g-~~~~~l~~lf~~A~~--~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~ 336 (489)
..+...+. | .....+..+|..... ....||+|||||.|.... ..+ |+.
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~----------QDV---LYn 891 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT----------QKV---LFT 891 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH----------HHH---HHH
Confidence 65432210 1 123455666665422 234699999999996531 122 333
Q ss_pred HhcCCccCCCcEEEEEEeCC---CCcccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCC
Q 011305 337 QMDGLTQSDELVFVLAATNL---PWELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGY 411 (489)
Q Consensus 337 ~ldg~~~~~~~viVIatTn~---p~~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~ 411 (489)
.++........++||+++|. +..+++.+++||.. .+.|++++.+++.+||+..+.......+. .++.+|+.....
T Consensus 892 LFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~ 971 (1164)
T PTZ00112 892 LFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANV 971 (1164)
T ss_pred HHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhc
Confidence 33322334456888999986 45678899999864 48999999999999999988653211111 133333322211
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 412 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 412 sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
.+|+ |+++..++...++.. ...|+.+|+.+|+..+..+
T Consensus 972 -SGDA------------RKALDILRrAgEike------gskVT~eHVrkAleeiE~s 1009 (1164)
T PTZ00112 972 -SGDI------------RKALQICRKAFENKR------GQKIVPRDITEATNQLFDS 1009 (1164)
T ss_pred -CCHH------------HHHHHHHHHHHhhcC------CCccCHHHHHHHHHHHHhh
Confidence 2344 333333333222211 1248889999888776433
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=154.00 Aligned_cols=190 Identities=21% Similarity=0.257 Sum_probs=128.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+..++++.+|++++|++.+++.|+..+... ..++.+||+||+|+|||++|+.+|+.++..
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 345677889999999999999999887541 234568999999999999999999988531
Q ss_pred ---------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 270 ---------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 270 ---------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
++.++++. ...-..++.+.+.+.. ..+.|++|||+|.+.. ..
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~-------------~a 135 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK-------------EA 135 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH-------------HH
Confidence 22222211 0112223444443332 3347999999998742 23
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~ 409 (489)
.+.|+..++.. +..+++|.+|+.++.+.+++.+|+. .+.|+.|+.++...+++..+...+...+.+ +..++..+.
T Consensus 136 ~naLLk~LEep---p~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~ 211 (486)
T PRK14953 136 FNALLKTLEEP---PPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASE 211 (486)
T ss_pred HHHHHHHHhcC---CCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 46788887632 3335555567778888899999995 689999999999999999888776554333 455666555
Q ss_pred CCcHHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEA 423 (489)
Q Consensus 410 G~sg~Di~~l~~~A 423 (489)
| +.+++..+++.+
T Consensus 212 G-~lr~al~~Ldkl 224 (486)
T PRK14953 212 G-GMRDAASLLDQA 224 (486)
T ss_pred C-CHHHHHHHHHHH
Confidence 4 344444444433
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=156.50 Aligned_cols=196 Identities=18% Similarity=0.150 Sum_probs=133.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe----
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS---- 274 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~---- 274 (489)
+.+++.+.+|++|+|++.+++.|...+.. ...++.+||+||+|+|||++|+++|+.+++.....+
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~~-----------gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFET-----------GRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 34557788999999999999999988754 234578999999999999999999999864321111
Q ss_pred ---------ccchhhh--------h--ccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 275 ---------ASSVVSK--------W--RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 275 ---------~s~l~~~--------~--~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
|..+... . ....-..++.+.+.+.. ....|++|||+|.+.. ...
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~-------------~a~ 149 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST-------------AAF 149 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------HHH
Confidence 0000000 0 00112345556555542 2347999999998842 245
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..|+. ....+.+|.+|+.++.+.+.+++|+ ..+.|..++.++...+++..+.+.+...+. .++.++..+.|
T Consensus 150 naLLKtLEe---Pp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G 225 (598)
T PRK09111 150 NALLKTLEE---PPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG 225 (598)
T ss_pred HHHHHHHHh---CCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888873 3334556667778888888999999 569999999999999999988777665443 34556665654
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.+++..++..+
T Consensus 226 -dlr~al~~Ldkl 237 (598)
T PRK09111 226 -SVRDGLSLLDQA 237 (598)
T ss_pred -CHHHHHHHHHHH
Confidence 555555555443
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.4e-14 Score=155.71 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=131.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+...
T Consensus 7 ~~kyRP~~f~diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~ 75 (563)
T PRK06647 7 ATKRRPRDFNSLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE 75 (563)
T ss_pred HHHhCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc
Confidence 35677889999999999999999888541 234679999999999999999999998542
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++.. ...-..++.+.+.+. .....|++|||+|.+.. ..+
T Consensus 76 C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~ 136 (563)
T PRK06647 76 CSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN-------------SAF 136 (563)
T ss_pred chHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH-------------HHH
Confidence 22222211 011223344433322 23457999999998842 246
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. .+..+++|.+|+.+..+.+++++|+. .+.|..++.++...+++..+...+...+. .+..++..+.|
T Consensus 137 naLLK~LEe---pp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G 212 (563)
T PRK06647 137 NALLKTIEE---PPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG 212 (563)
T ss_pred HHHHHhhcc---CCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 778888873 34456677777888889999999995 58999999999999999888666654333 35556665554
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
+.+++..++..+
T Consensus 213 -dlR~alslLdkl 224 (563)
T PRK06647 213 -SVRDAYTLFDQV 224 (563)
T ss_pred -CHHHHHHHHHHH
Confidence 555555555443
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.7e-14 Score=136.81 Aligned_cols=187 Identities=16% Similarity=0.171 Sum_probs=111.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+..+|++++|.++.. +...+... +.. .....++||||||||||+|++++|+++ +....+++..+..
T Consensus 10 ~~~~~fd~f~~~~~~~--~~~~~~~~------~~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL--LLDSLRKN------FID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH--HHHHHHHH------hhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 3567899998765432 11111110 111 112468999999999999999999986 4455556554221
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
. ....++... .+..+|+|||++.+.+... ....++..++.....+..++|++++..|..
T Consensus 80 ~--------~~~~~~~~~--~~~dlLilDDi~~~~~~~~-----------~~~~l~~l~n~~~~~~~~illits~~~p~~ 138 (229)
T PRK06893 80 Y--------FSPAVLENL--EQQDLVCLDDLQAVIGNEE-----------WELAIFDLFNRIKEQGKTLLLISADCSPHA 138 (229)
T ss_pred h--------hhHHHHhhc--ccCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCCcEEEEeCCCChHH
Confidence 1 111222222 2347999999998864421 112344444433333333445555556665
Q ss_pred cc---HHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHH
Q 011305 360 LD---AAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 360 Ld---~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~ 421 (489)
++ +.+++|+. ..+.++.|+.++|.+|++..+.......+.+ ++.|++...| +.+.+..++.
T Consensus 139 l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~ 205 (229)
T PRK06893 139 LSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALD 205 (229)
T ss_pred ccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHH
Confidence 44 89999874 5778999999999999998887665554433 4566666653 3344444333
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=137.48 Aligned_cols=191 Identities=20% Similarity=0.254 Sum_probs=137.2
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
...+.+++|+|.+..|+.|.+....++. ..|..++||+|++|||||+++|++..++ |..+++|...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~ 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc
Confidence 4567899999999999999988766553 3466899999999999999999999977 7888988877663
Q ss_pred hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-ccCCCcEEEEEEeCCC
Q 011305 280 SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLP 357 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-~~~~~~viVIatTn~p 357 (489)
.+..++...+. ..+=|||+||+- + .. .+ .--..|-..++|- ...+.+|+|.+|+|+.
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs-F-e~-------~d---~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS-F-EE-------GD---TEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC-C-CC-------Cc---HHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 23344444442 234699999873 1 11 11 1123444556654 5678899999999875
Q ss_pred Cccc---------------------H--HHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhc
Q 011305 358 WELD---------------------A--AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTE 409 (489)
Q Consensus 358 ~~Ld---------------------~--al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~----La~~t~ 409 (489)
..+. + +|.+||...+.|..|+.++-.+|++.++...+...+. ++.. .|..-.
T Consensus 152 HLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg 231 (249)
T PF05673_consen 152 HLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRG 231 (249)
T ss_pred hccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 3321 1 3455999999999999999999999999877776542 3322 344456
Q ss_pred CCcHHHHHHHHHH
Q 011305 410 GYSGSDIRLVSKE 422 (489)
Q Consensus 410 G~sg~Di~~l~~~ 422 (489)
|.||+--.+.++.
T Consensus 232 ~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 232 GRSGRTARQFIDD 244 (249)
T ss_pred CCCHHHHHHHHHH
Confidence 7788776666554
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.3e-14 Score=163.57 Aligned_cols=196 Identities=18% Similarity=0.307 Sum_probs=140.8
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------- 266 (489)
.....+.....+-.+++++|.+...+++.+.+.. ....+++|+||||||||++++++|..+
T Consensus 158 ~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~ 225 (852)
T TIGR03346 158 KYARDLTERAREGKLDPVIGRDEEIRRTIQVLSR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPE 225 (852)
T ss_pred HHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCch
Confidence 3445555556677899999999987777776533 223689999999999999999999986
Q ss_pred ---CCcEEEEeccchh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 267 ---~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
+.+++.++.+.+. .+|.|+.+..++.++..+.. ..+.||||||+|.+.+.....+. . ...+.|...+
T Consensus 226 ~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~-~----d~~~~Lk~~l-- 298 (852)
T TIGR03346 226 SLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGA-M----DAGNMLKPAL-- 298 (852)
T ss_pred hhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcch-h----HHHHHhchhh--
Confidence 6788898888775 46889999999999998865 35799999999999864322111 1 1222232222
Q ss_pred CccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHhcC
Q 011305 341 LTQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVERTEG 410 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-----dl~~La~~t~G 410 (489)
.+ ..+.+|++|+..+ ..|+++.|||. .+.++.|+.+++..|++.+.........+ .+..++..+.+
T Consensus 299 --~~-g~i~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~ 374 (852)
T TIGR03346 299 --AR-GELHCIGATTLDEYRKYIEKDAALERRFQ-PVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHR 374 (852)
T ss_pred --hc-CceEEEEeCcHHHHHHHhhcCHHHHhcCC-EEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccc
Confidence 22 3477888887663 47999999995 48999999999999999876655443322 34445555555
Q ss_pred Cc
Q 011305 411 YS 412 (489)
Q Consensus 411 ~s 412 (489)
|.
T Consensus 375 yi 376 (852)
T TIGR03346 375 YI 376 (852)
T ss_pred cc
Confidence 53
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=5.4e-14 Score=149.69 Aligned_cols=176 Identities=19% Similarity=0.208 Sum_probs=123.3
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------- 269 (489)
+++.+.+|++|+|++.+++.|...+... ..++.+||+||||+|||++|+++|+.+...
T Consensus 9 ~kyRP~~~~diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~ 77 (451)
T PRK06305 9 RKYRPQTFSEILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQ 77 (451)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcc
Confidence 4567789999999999999999887541 234679999999999999999999988432
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.+++... . .-..++.+.+.. ....+.|++|||+|.+... ..
T Consensus 78 c~~C~~i~~~~~~d~~~i~g~~~----~--gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~ 138 (451)
T PRK06305 78 CASCKEISSGTSLDVLEIDGASH----R--GIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AF 138 (451)
T ss_pred cHHHHHHhcCCCCceEEeecccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HH
Confidence 333332211 0 012222222222 2234579999999988432 35
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++.. ++.+++|++|+.+..+.+++++|+ ..+.|+.++.++....++..+...+...+. .++.++..+.|
T Consensus 139 n~LLk~lEep---~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g 214 (451)
T PRK06305 139 NSLLKTLEEP---PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG 214 (451)
T ss_pred HHHHHHhhcC---CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 6788888742 334666777788889999999999 568999999999999988887766554332 35556665554
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.7e-14 Score=153.56 Aligned_cols=192 Identities=18% Similarity=0.193 Sum_probs=134.0
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC----------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT---------- 268 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~---------- 268 (489)
+..++++.+|++++|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+..
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 345678899999999999999999887541 23466799999999999999999998732
Q ss_pred --------------cEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHH
Q 011305 269 --------------TFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRL 330 (489)
Q Consensus 269 --------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i 330 (489)
.++.+++++- ..-..++.+...... ....|++|||+|.+.. ..
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~-------------~A 133 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASN------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK-------------EA 133 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccc------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH-------------HH
Confidence 1333332210 012344444443221 2235999999988843 35
Q ss_pred HHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhc
Q 011305 331 KTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTE 409 (489)
Q Consensus 331 ~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~ 409 (489)
++.|+..++.. +..+.+|.+|+++..+.+++++|+ ..++|..++.++....++..+...+...+. .+..++....
T Consensus 134 ~NALLK~LEEp---p~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~ 209 (535)
T PRK08451 134 FNALLKTLEEP---PSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGN 209 (535)
T ss_pred HHHHHHHHhhc---CCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 67788888743 334556667788899999999998 578999999999999998888776655433 3555666555
Q ss_pred CCcHHHHHHHHHHHHh
Q 011305 410 GYSGSDIRLVSKEAAM 425 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~ 425 (489)
| +.+++..++..+..
T Consensus 210 G-dlR~alnlLdqai~ 224 (535)
T PRK08451 210 G-SLRDTLTLLDQAII 224 (535)
T ss_pred C-cHHHHHHHHHHHHH
Confidence 4 66666666655443
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-14 Score=165.40 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=142.9
Q ss_pred HhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------
Q 011305 194 SLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------- 266 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------- 266 (489)
...+.+......-.|++++|.++..+.+.+.+.. ....+++|+||||||||++|+.+|..+
T Consensus 164 ~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~ 231 (821)
T CHL00095 164 EFGTNLTKEAIDGNLDPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPD 231 (821)
T ss_pred HHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCCh
Confidence 3445555555566799999999999999987643 234689999999999999999999987
Q ss_pred ---CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 267 ---KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 267 ---~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+.+++.++++.+. .+|.|+.+..++.+++.+....++||||||+|.+.+.....+. .+ +.+-|...+.
T Consensus 232 ~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~-~~----~a~lLkp~l~-- 304 (821)
T CHL00095 232 ILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGA-ID----AANILKPALA-- 304 (821)
T ss_pred hhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCc-cc----HHHHhHHHHh--
Confidence 4789999998876 4788999999999999998878899999999999876432211 11 2222222222
Q ss_pred ccCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCC----CCCC-CCCCHHHHHHHhcCC
Q 011305 342 TQSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS----QTGE-ESLPYDLLVERTEGY 411 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~----~~~~-~~~dl~~La~~t~G~ 411 (489)
+ +.+.+|++|+..+ ..|+++.+||. .+.++.|+.++...|++..... .... .+..+..++..+.+|
T Consensus 305 --r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf~-~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~y 380 (821)
T CHL00095 305 --R-GELQCIGATTLDEYRKHIEKDPALERRFQ-PVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQY 380 (821)
T ss_pred --C-CCcEEEEeCCHHHHHHHHhcCHHHHhcce-EEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhcc
Confidence 2 3366777777653 47899999995 4789999999999998865422 1222 222355666777766
Q ss_pred cH
Q 011305 412 SG 413 (489)
Q Consensus 412 sg 413 (489)
.+
T Consensus 381 i~ 382 (821)
T CHL00095 381 IA 382 (821)
T ss_pred Cc
Confidence 54
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.6e-14 Score=147.09 Aligned_cols=178 Identities=19% Similarity=0.210 Sum_probs=121.3
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.|+..+.. ...++.+||+||||+|||++|+++|+.+...
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~~-----------~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLRM-----------GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHHh-----------CCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 34567788999999999999999887754 1234679999999999999999999998652
Q ss_pred -----------------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccch
Q 011305 270 -----------------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 270 -----------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
++.+++.+. ..-..++.+.+.+. .....|++|||+|.+...
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~------~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~------ 142 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASN------NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA------ 142 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeeccccc------CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH------
Confidence 111211110 11233444444432 122369999999988432
Q ss_pred hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CH
Q 011305 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PY 401 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl 401 (489)
..+.|+..++. .++.+++|.+|+.+..+.+++++|+ ..+.|+.++.++....++..+...+...+. .+
T Consensus 143 -------~~~~LLk~LEe---p~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al 211 (397)
T PRK14955 143 -------AFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGISVDADAL 211 (397)
T ss_pred -------HHHHHHHHHhc---CCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 34567777763 2334555556677788889999999 469999999999888888887665544332 34
Q ss_pred HHHHHHhcC
Q 011305 402 DLLVERTEG 410 (489)
Q Consensus 402 ~~La~~t~G 410 (489)
+.++..+.|
T Consensus 212 ~~l~~~s~g 220 (397)
T PRK14955 212 QLIGRKAQG 220 (397)
T ss_pred HHHHHHcCC
Confidence 556665554
|
|
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.3e-13 Score=142.41 Aligned_cols=227 Identities=20% Similarity=0.209 Sum_probs=143.1
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVV 279 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~ 279 (489)
....+.++|.++..++|...+..... ...+.+++|+||||||||++++.+++++ +..+++++|....
T Consensus 26 ~~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~ 97 (394)
T PRK00411 26 DYVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDR 97 (394)
T ss_pred CCcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCC
Confidence 33457899999999999888755332 1234679999999999999999999987 5778999986432
Q ss_pred hh----------hcc--------chHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 280 SK----------WRG--------DSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 280 ~~----------~~g--------~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
+. ..+ ........+.+.... ..+.||+|||+|.+..... ...+..|+..++.
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~~ 168 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHEE 168 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhhc
Confidence 21 111 122333344433332 3457999999999972211 1244556555543
Q ss_pred CccCCCcEEEEEEeCCCC---cccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCCC--C-CCCCHHHHHHHhcCCcH
Q 011305 341 LTQSDELVFVLAATNLPW---ELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTG--E-ESLPYDLLVERTEGYSG 413 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~---~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~--~-~~~dl~~La~~t~G~sg 413 (489)
.. ..++.+|+++|.++ .+++.+.+||. ..+.|++++.++..+|++..+..... . .+..++.+++.+.+.+|
T Consensus 169 ~~--~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 169 YP--GARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred cC--CCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 32 23577888888764 47888888884 56899999999999999988753211 1 22235556666643222
Q ss_pred --HHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 414 --SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 414 --~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
+.+-.++..|+..+..+ + ...|+.+|+..|+..+.++
T Consensus 247 d~r~a~~ll~~a~~~a~~~------~------------~~~I~~~~v~~a~~~~~~~ 285 (394)
T PRK00411 247 DARVAIDLLRRAGLIAERE------G------------SRKVTEEDVRKAYEKSEIV 285 (394)
T ss_pred cHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHHHHH
Confidence 22234455444433221 0 1238888888888776543
|
|
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.5e-14 Score=134.75 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=118.7
Q ss_pred CCCCcccc--CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 205 DVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 205 ~~~~~dli--G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
..+|++++ +.+.+.+.+++++.. ..+.+++|+||+|||||++|+++++++ +.+++++++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAG------------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34577776 356677777776431 234789999999999999999999987 5788999998875
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
... ..++... ..+.+|+|||+|.+..... ....+...++.....+. .+|++++..+..
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~~~~-----------~~~~L~~~l~~~~~~~~-~iIits~~~~~~ 136 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAGQPE-----------WQEALFHLYNRVREAGG-RLLIAGRAAPAQ 136 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcCChH-----------HHHHHHHHHHHHHHcCC-eEEEECCCChHH
Confidence 332 1222222 2246999999998854310 01223333332222222 334444434433
Q ss_pred c---cHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 360 L---DAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 360 L---d~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
+ .+.+.+|+. ..+.+|.|+.+++..+++.++...+...+.+ +..|++. -+.+.+++..+++.+..
T Consensus 137 ~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~-~~gn~r~L~~~l~~~~~ 207 (226)
T TIGR03420 137 LPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRH-GSRDMGSLMALLDALDR 207 (226)
T ss_pred CCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Confidence 3 278888884 6789999999999999998776554443332 4556663 55577777777766554
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-14 Score=150.84 Aligned_cols=249 Identities=26% Similarity=0.317 Sum_probs=161.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhcc-c
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g-~ 285 (489)
-|+|++++|+.+..++.....+......+ ..+++++||+||||||||++|+++|+.++.+|+.+++..+.. .|+| +
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 58999999999988776543332221111 224589999999999999999999999999999999987763 6776 4
Q ss_pred hHHHHHHHHHHH--------------------------------------------------------------------
Q 011305 286 SEKLIKVLFELA-------------------------------------------------------------------- 297 (489)
Q Consensus 286 ~~~~l~~lf~~A-------------------------------------------------------------------- 297 (489)
.+..++.+|..|
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 555555555444
Q ss_pred -----------------------------------------------------------------------HhcCCcEEE
Q 011305 298 -----------------------------------------------------------------------RHHAPSTIF 306 (489)
Q Consensus 298 -----------------------------------------------------------------------~~~~p~VL~ 306 (489)
+..+.+|||
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 012347999
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhcccccccC
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVP 375 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~~i~~~ 375 (489)
|||+|.++....+. .......-++..||..++|... ...++++||+. ..|+.|-|.|.-||+..+.+.
T Consensus 253 iDEiDKIa~~~~~~-~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 253 IDEIDKIAKKGESS-GADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEchhhhcccCCCC-CCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 99999999764221 1112223488899999987532 23567788775 356778899999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHh-------HHHHHHHHHhhhhh----c
Q 011305 376 LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAM-------QPLRRLMVLLEGRQ----E 440 (489)
Q Consensus 376 ~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~-------~a~rR~~~~le~~~----~ 440 (489)
.++.++...||..--... -..+..+-+ +.| |+...++.+++.|.. .-+|++...++..- -
T Consensus 332 ~L~~edL~rILteP~nsL----ikQy~~Lf~-~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~f 406 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSL----IKQYKALMK-TEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISF 406 (441)
T ss_pred CCCHHHHHHHhcCChhHH----HHHHHHHHh-hcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHh
Confidence 999999998874310000 000111111 222 566777777777764 22456555555432 2
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|.... ....|+.+.+...+...
T Consensus 407 e~p~~~~-~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 407 EAPDLSG-QNITIDADYVSKKLGAL 430 (441)
T ss_pred cCCCCCC-CEEEECHHHHHhHHHHH
Confidence 2233221 22347888877766544
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.1e-14 Score=146.38 Aligned_cols=177 Identities=16% Similarity=0.215 Sum_probs=124.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------- 270 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~--------- 270 (489)
.+++++.+|++++|++.+++.+...+... ..++++|||||||+|||++|+++++.+..+.
T Consensus 8 ~~k~rP~~~~~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~ 76 (367)
T PRK14970 8 ARKYRPQTFDDVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFS 76 (367)
T ss_pred HHHHCCCcHHhcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 34677889999999999999999887541 2347899999999999999999999885421
Q ss_pred ---EEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc
Q 011305 271 ---FNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (489)
Q Consensus 271 ---i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~ 343 (489)
+.++... ......++.++..+.. ..+.||+|||+|.+... .++.++..++.
T Consensus 77 ~~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~--- 134 (367)
T PRK14970 77 FNIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEE--- 134 (367)
T ss_pred cceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhC---
Confidence 2222111 1122455566655432 23469999999977432 34667777763
Q ss_pred CCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
.+...++|.+|+.+..+.+++.+|+. .+.++.|+.++...++...+...+...+ ..++.++..+.|
T Consensus 135 ~~~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g 201 (367)
T PRK14970 135 PPAHAIFILATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG 201 (367)
T ss_pred CCCceEEEEEeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC
Confidence 23335566677778889999999994 5899999999999999988877666433 335556665543
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.8e-13 Score=133.89 Aligned_cols=185 Identities=14% Similarity=0.123 Sum_probs=112.6
Q ss_pred CCCCCcccc-C-cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 204 PDVKWESIK-G-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 204 ~~~~~~dli-G-~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
+..+|++++ | ...+...+..+... ....+++|+||||||||++++++++++ +..+.+++..+.
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 455688876 4 45566666654422 123589999999999999999999876 345666665543
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
... ...+.+.... ..+|+|||++.+.++.. ....|+..++.....+...+++++++.|.
T Consensus 85 ~~~--------~~~~~~~~~~--~dlliiDdi~~~~~~~~-----------~~~~lf~l~n~~~e~g~~~li~ts~~~p~ 143 (235)
T PRK08084 85 AWF--------VPEVLEGMEQ--LSLVCIDNIECIAGDEL-----------WEMAIFDLYNRILESGRTRLLITGDRPPR 143 (235)
T ss_pred hhh--------hHHHHHHhhh--CCEEEEeChhhhcCCHH-----------HHHHHHHHHHHHHHcCCCeEEEeCCCChH
Confidence 211 1112222221 26899999998864421 11122233322222222234555555554
Q ss_pred c---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 011305 359 E---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 359 ~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~ 422 (489)
. +.+.++||+. ..+.+..|+.+++.++++..+...+...+.+ ++.|++...| +.+.+..++..
T Consensus 144 ~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~ 212 (235)
T PRK08084 144 QLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQ 212 (235)
T ss_pred HcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHH
Confidence 4 5799999995 6788999999999999998776655544433 5666766664 44455444443
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-14 Score=148.19 Aligned_cols=197 Identities=18% Similarity=0.330 Sum_probs=123.2
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G~e~--~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.+..+|++++ |..+ +...+.+.... +. ...+++||||||+|||+|++++++++ +..+++++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~----~~-------~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN----PG-------RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC----cC-------CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 4667788876 5433 33333333221 11 13569999999999999999999986 46788999
Q ss_pred ccchhhhhccchH-HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~-~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+.++...+..... ..+.. |.......+.+|+|||++.+.+... ....++..++.....+. .+|+++
T Consensus 168 ~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~~~~-----------~q~elf~~~n~l~~~~k-~iIits 234 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIGKTG-----------VQTELFHTFNELHDSGK-QIVICS 234 (440)
T ss_pred HHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcCcHH-----------HHHHHHHHHHHHHHcCC-eEEEEC
Confidence 8887665432211 11222 2222223578999999998854311 12234444433322332 445555
Q ss_pred eCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 354 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 354 Tn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
...|.. +.+.+.+||. ..+.+..|+.++|..|++..+...+...+.+ ++.|++...| +.+++..++....
T Consensus 235 d~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~ 310 (440)
T PRK14088 235 DREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLL 310 (440)
T ss_pred CCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHH
Confidence 566654 5678899994 4667899999999999999987655554433 5666666654 5667776665543
|
|
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=147.56 Aligned_cols=218 Identities=21% Similarity=0.305 Sum_probs=137.8
Q ss_pred cccCcHHHHHHHHHHHHccccCchh----h--cccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hh
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKY----F--TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KW 282 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~----~--~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~ 282 (489)
.++|++++++.+...+......-.. . ........++||+||||||||++|+++|+.++.||..++++.+.. .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gy 157 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGY 157 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcccccc
Confidence 4799999999998776432222111 0 001112468999999999999999999999999999999887653 57
Q ss_pred ccch-HHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhHH-HHHHHHHHHHHhcCCcc----------CCC
Q 011305 283 RGDS-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLTQ----------SDE 346 (489)
Q Consensus 283 ~g~~-~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~LL~~ldg~~~----------~~~ 346 (489)
+|.. +..+..++..+ ....++||||||+|.+..++.......+. ...+++.||+.|+|... ...
T Consensus 158 vG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~ 237 (413)
T TIGR00382 158 VGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQ 237 (413)
T ss_pred ccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCC
Confidence 7763 44444444322 23456899999999998764332211111 23578889999986531 113
Q ss_pred cEEEEEEeCCCC--------------------------------------------------cccHHHHhhcccccccCC
Q 011305 347 LVFVLAATNLPW--------------------------------------------------ELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 347 ~viVIatTn~p~--------------------------------------------------~Ld~al~rRf~~~i~~~~ 376 (489)
+.++|.|+|-.. .+.|+++.|++.++.|.+
T Consensus 238 ~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~p 317 (413)
T TIGR00382 238 EFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEK 317 (413)
T ss_pred CeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCC
Confidence 456777776510 034666678888889988
Q ss_pred CCHHHHHHHHHHh----cC-------CCCCCCC---CCHHHHHHH--hcCCcHHHHHHHHHHHHhHH
Q 011305 377 PDTEARRAMFESL----LP-------SQTGEES---LPYDLLVER--TEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 377 Pd~~eR~~IL~~~----l~-------~~~~~~~---~dl~~La~~--t~G~sg~Di~~l~~~A~~~a 427 (489)
.+.++..+|+... ++ ..+.... .-++.|++. ...+-.+.|+.+++......
T Consensus 318 L~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~ 384 (413)
T TIGR00382 318 LDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDV 384 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHH
Confidence 9999988888752 21 1122211 124455554 23455566666666555543
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-13 Score=132.38 Aligned_cols=202 Identities=13% Similarity=0.121 Sum_probs=127.8
Q ss_pred CCCCCcccc--CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 204 PDVKWESIK--GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 204 ~~~~~~dli--G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
++.+|++++ +.+.+...++++... .....+++|+||+|||||++|+++++++ +.+++++++.++
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~-----------~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAG-----------PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhc-----------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 456788877 345566666665431 1234689999999999999999999976 678888888765
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
... + .....+.+|+|||+|.+... .+..|+..++........+++++++..|.
T Consensus 82 ~~~------------~--~~~~~~~~liiDdi~~l~~~-------------~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 82 LLA------------F--DFDPEAELYAVDDVERLDDA-------------QQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred HHH------------H--hhcccCCEEEEeChhhcCch-------------HHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 322 1 11223579999999987432 12334444443333333334443333332
Q ss_pred --cccHHHHhhc--ccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 359 --ELDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 359 --~Ld~al~rRf--~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
.+.+.+.+|| ...+.+++|+.+++..+++......+...+.+ ++.|++. ..-+.+++..+++.....+..
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~-~~gn~~~l~~~l~~l~~~~~~---- 209 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTH-FRRDMPSLMALLDALDRYSLE---- 209 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHH----
Confidence 3568889898 46889999999999999988776555443332 4556663 334566666666653222111
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
..++||...+++++.
T Consensus 210 ---------------~~~~i~~~~~~~~l~ 224 (227)
T PRK08903 210 ---------------QKRPVTLPLLREMLA 224 (227)
T ss_pred ---------------hCCCCCHHHHHHHHh
Confidence 114589999988886
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=150.60 Aligned_cols=233 Identities=18% Similarity=0.200 Sum_probs=137.9
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
.+.+.....+.+|++++|++...+.+...+.. ..+.+++|+||||||||++|+++++..
T Consensus 141 ~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~ 208 (615)
T TIGR02903 141 HKSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFA 208 (615)
T ss_pred hhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCccc
Confidence 34445556678899999999999988766532 123579999999999999999998765
Q ss_pred -CCcEEEEeccchhh-------hhccchHHH----HHHHHHH----------HHhcCCcEEEEchhhhHHhhhcccchhh
Q 011305 267 -KTTFFNISASSVVS-------KWRGDSEKL----IKVLFEL----------ARHHAPSTIFLDEIDAIISQRGEARSEH 324 (489)
Q Consensus 267 -~~~~i~v~~s~l~~-------~~~g~~~~~----l~~lf~~----------A~~~~p~VL~IDEiD~l~~~r~~~~~~~ 324 (489)
+.+|+.+++..+.. .+.+..... .+..+.. ......++|||||++.|...
T Consensus 209 ~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------- 280 (615)
T TIGR02903 209 EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------- 280 (615)
T ss_pred CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH--------
Confidence 45789999876521 111111000 0000000 01223479999999988544
Q ss_pred HHHHHHHHHHHHHhcCCc--------------------------cCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCC
Q 011305 325 EASRRLKTELLIQMDGLT--------------------------QSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 378 (489)
Q Consensus 325 ~~~~~i~~~LL~~ldg~~--------------------------~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd 378 (489)
.+..|+..++.-. .....+++.+||+.++.+++++++||. .+.+++++
T Consensus 281 -----~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls 354 (615)
T TIGR02903 281 -----LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCA-EVFFEPLT 354 (615)
T ss_pred -----HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhcee-EEEeCCCC
Confidence 2333444443210 111224444456778889999999996 57889999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHH
Q 011305 379 TEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457 (489)
Q Consensus 379 ~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eD 457 (489)
.++...|++..+.......+.+ ++.|++.+. .++..-..+..+...++.+..... .. .....|+.+|
T Consensus 355 ~edi~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~-------~~---~~~~~I~~ed 422 (615)
T TIGR02903 355 PEDIALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAG-------KE---NDKVTITQDD 422 (615)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhc-------cC---CCCeeECHHH
Confidence 9999999999887654332222 233333322 333333333333322222211000 00 0113599999
Q ss_pred HHHHHhhhC
Q 011305 458 VEIALKNTR 466 (489)
Q Consensus 458 f~~AL~~~~ 466 (489)
+++++..-+
T Consensus 423 v~~~l~~~r 431 (615)
T TIGR02903 423 VYEVIQISR 431 (615)
T ss_pred HHHHhCCCc
Confidence 999998655
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=150.40 Aligned_cols=246 Identities=24% Similarity=0.337 Sum_probs=161.4
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhcc-c
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRG-D 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g-~ 285 (489)
.|+|++.+|+.+..++.....+....... ...++++||+||||||||++|+++|+.++.+|+.++++++.. .|+| +
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 59999999999998886533222211111 122489999999999999999999999999999999988774 5777 4
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 011305 286 SEKLIKVLFELAR------------------------------------------------------------------- 298 (489)
Q Consensus 286 ~~~~l~~lf~~A~------------------------------------------------------------------- 298 (489)
.+..++.++..|.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 4555555555550
Q ss_pred -----------------------------------------------------------------------hcCCcEEEE
Q 011305 299 -----------------------------------------------------------------------HHAPSTIFL 307 (489)
Q Consensus 299 -----------------------------------------------------------------------~~~p~VL~I 307 (489)
....+||||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 013469999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhcccccccCC
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~~i~~~~ 376 (489)
||||.++...+.. .......-++..||..++|-.. ...+|++||+. ..|+.|-|.|.-||+.++.+..
T Consensus 256 DEiDKIa~~~~~~-~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 256 DEIDKIAARGGSS-GPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EcchhhcccCCCC-CCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 9999999764321 1122223488899999988532 23567778765 4567788999999999999999
Q ss_pred CCHHHHHHHHHH----hcCCCCC---CCCCCHHHHHHHhcCCcHHHHHHHHHHHHhH-------HHHHHHHHhhhhhc--
Q 011305 377 PDTEARRAMFES----LLPSQTG---EESLPYDLLVERTEGYSGSDIRLVSKEAAMQ-------PLRRLMVLLEGRQE-- 440 (489)
Q Consensus 377 Pd~~eR~~IL~~----~l~~~~~---~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~-------a~rR~~~~le~~~~-- 440 (489)
++.++..+||.. .++.+.. ...+++ -|+...++.+++.|... -+|++...++..-.
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L--------~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~ 406 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQALLATEGVTL--------EFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDI 406 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEE--------EEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHH
Confidence 999999988743 1111100 001111 15667777777777652 24566555554322
Q ss_pred --cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 --VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 --~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|.... ....|+.+-+...+..+
T Consensus 407 ~Fe~p~~~~-~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 407 SFEAPDMSG-ETVTIDAAYVDEKLGDL 432 (443)
T ss_pred hccCCCCCC-CEEEECHHHHHHHHHHH
Confidence 2233221 12347887777666543
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-13 Score=144.46 Aligned_cols=201 Identities=17% Similarity=0.243 Sum_probs=121.8
Q ss_pred CCCCCCcccc-CcHH--HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 203 SPDVKWESIK-GLEN--AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dli-G~e~--~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+..+|++++ |..+ +...++++...+...+ ..+.++++||||+|+|||+|++++++++ +..++++++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~------~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQGK------GFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccccc------CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 4667788876 5433 2334444332211000 1123679999999999999999999976 6888999987
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
++...+...........|.... ..+.+|+|||++.+.++.. .+..++..++.....+ ..+|++++..
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~-~~~dvLiIDDiq~l~~k~~-----------~qeelf~l~N~l~~~~-k~IIlts~~~ 245 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFY-RNVDALFIEDIEVFSGKGA-----------TQEEFFHTFNSLHTEG-KLIVISSTCA 245 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHc-ccCCEEEEcchhhhcCChh-----------hHHHHHHHHHHHHHCC-CcEEEecCCC
Confidence 7665443222111111233222 3458999999998864321 1223333333222222 2344444444
Q ss_pred CC---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 011305 357 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 357 p~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A 423 (489)
|. .+++++++||. ..+.++.|+.++|..|++..+...+...+.+ ++.++....+ +.+++..++...
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l 317 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLL 317 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 54 46789999995 6788888999999999999988766554443 4556665553 445555544444
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=139.66 Aligned_cols=177 Identities=24% Similarity=0.237 Sum_probs=120.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+.+++.+.+|++++|++++++.+...+... ...+++|+||||||||++++++++++. ..++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 456678889999999999999999887431 123689999999999999999999873 345555
Q ss_pred eccchhhhhccchHHHHHHH-HHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 274 SASSVVSKWRGDSEKLIKVL-FELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~l-f~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
++++..+ ...+... ...+.. ..+.+|+|||+|.+... ..+.|+..++.... .
T Consensus 75 ~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~~---~ 132 (319)
T PRK00440 75 NASDERG------IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYSQ---N 132 (319)
T ss_pred ccccccc------hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCCC---C
Confidence 5443211 1111111 122221 23469999999988432 23446666654322 2
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
..+|.++|.+..+.+++.+|+. .+.++.++.++...+++.++...+...+ ..++.+++.+.|
T Consensus 133 ~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g 195 (319)
T PRK00440 133 TRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG 195 (319)
T ss_pred CeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 3456677888888888999995 5899999999999999998877665432 345666665554
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.3e-13 Score=153.66 Aligned_cols=155 Identities=22% Similarity=0.367 Sum_probs=109.0
Q ss_pred hhcCCCCCCCccccCcHHHHH---HHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 199 IIRGSPDVKWESIKGLENAKR---LLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~---~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
+....++.+|++++|++.+.. .++..+.. ....+++|+||||||||++|+++|+.++.+++.+++
T Consensus 18 Laek~RP~tldd~vGQe~ii~~~~~L~~~i~~------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 18 LADRLRPRTLEEFVGQDHILGEGRLLRRAIKA------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred hHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhc------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 334456788999999999885 45555432 123589999999999999999999999999998887
Q ss_pred cchhhhhccchHHHHHHHHHHHH-----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~-----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
.... .+.++..+..+. .....+|||||+|.+... .++.|+..++. ..+++
T Consensus 86 ~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~-----g~IiL 140 (725)
T PRK13341 86 VLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVEN-----GTITL 140 (725)
T ss_pred hhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhcC-----ceEEE
Confidence 5321 112223333221 123579999999988432 23456666542 23555
Q ss_pred EEEe-CCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcC
Q 011305 351 LAAT-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 351 IatT-n~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
|++| ..+ ..+++++++|+ ..+.++.++.+++..+++..+.
T Consensus 141 I~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 141 IGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred EEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 5554 333 46889999997 5689999999999999999886
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.5e-14 Score=148.20 Aligned_cols=199 Identities=19% Similarity=0.201 Sum_probs=144.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEE---
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--FNI--- 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~--i~v--- 273 (489)
+.+++++.+|++++|++.+.+.|...+..- .-.++.||.||.|||||++||.+|+.+++.- ..-
T Consensus 6 L~rKyRP~~F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~ 74 (515)
T COG2812 6 LARKYRPKTFDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCG 74 (515)
T ss_pred HHHHhCcccHHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcch
Confidence 456788899999999999999999988652 2346899999999999999999999986542 100
Q ss_pred ---eccchhhh-hc---------cchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHH
Q 011305 274 ---SASSVVSK-WR---------GDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLI 336 (489)
Q Consensus 274 ---~~s~l~~~-~~---------g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~ 336 (489)
.|.++... +. ...-..++.+.+.+. ..++.|.+|||++.|. ....+.||+
T Consensus 75 ~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------~~afNALLK 141 (515)
T COG2812 75 KCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------KQAFNALLK 141 (515)
T ss_pred hhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh-------------HHHHHHHhc
Confidence 01111000 00 012233445444443 3445799999998774 457788999
Q ss_pred HhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHH
Q 011305 337 QMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSD 415 (489)
Q Consensus 337 ~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~D 415 (489)
.++ ..+..|.+|.+|..+..++..++||+ ..+.|...+.++....|...+.+.....+.+ +..+++...| +.+|
T Consensus 142 TLE---EPP~hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RD 216 (515)
T COG2812 142 TLE---EPPSHVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRD 216 (515)
T ss_pred ccc---cCccCeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-Chhh
Confidence 886 45666888889999999999999999 5588999999999999999998888876655 4545555554 6677
Q ss_pred HHHHHHHHHhH
Q 011305 416 IRLVSKEAAMQ 426 (489)
Q Consensus 416 i~~l~~~A~~~ 426 (489)
...++.++...
T Consensus 217 alslLDq~i~~ 227 (515)
T COG2812 217 ALSLLDQAIAF 227 (515)
T ss_pred HHHHHHHHHHc
Confidence 77777766553
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-13 Score=148.18 Aligned_cols=177 Identities=17% Similarity=0.189 Sum_probs=122.8
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF--------- 270 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~--------- 270 (489)
..++++.+|++|+|++.+++.|+..+.. ..-++++||+||+|||||++|+.+|+.+.+.-
T Consensus 7 ~~kyRP~~f~eivGQe~i~~~L~~~i~~-----------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~ 75 (620)
T PRK14954 7 ARKYRPSKFADITAQEHITHTIQNSLRM-----------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQ 75 (620)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccc
Confidence 3456788999999999999999987644 12346799999999999999999999996521
Q ss_pred -----------------------EEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchh
Q 011305 271 -----------------------FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 271 -----------------------i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
+.+++.. ...-..++.+.+... .....|++|||+|.+...
T Consensus 76 ~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s------~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~------- 142 (620)
T PRK14954 76 EVTEPCGECESCRDFDAGTSLNISEFDAAS------NNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA------- 142 (620)
T ss_pred ccCCCCccCHHHHHHhccCCCCeEEecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------
Confidence 1111110 011233444443332 223469999999988432
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHH
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYD 402 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~ 402 (489)
..+.|+..++.. +..+++|.+|+.+..+.+.+++|+ ..+.|..++.++....+...+...+...+ ..++
T Consensus 143 ------a~naLLK~LEeP---p~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~ 212 (620)
T PRK14954 143 ------AFNAFLKTLEEP---PPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQ 212 (620)
T ss_pred ------HHHHHHHHHhCC---CCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 356788888733 233555556677788989999999 67999999999988888887776655433 3356
Q ss_pred HHHHHhcC
Q 011305 403 LLVERTEG 410 (489)
Q Consensus 403 ~La~~t~G 410 (489)
.++..+.|
T Consensus 213 ~La~~s~G 220 (620)
T PRK14954 213 LIARKAQG 220 (620)
T ss_pred HHHHHhCC
Confidence 66666654
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=132.12 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=119.9
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G--~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.|+.+|++++ | .+.+...+......+- .....++||||+|+|||+|.+++++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~~~----------~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAENPG----------ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHSTT----------TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhcCC----------CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 3677899985 5 3445555555433311 123469999999999999999999875 57799999
Q ss_pred ccchhhhhccchHH-HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~~-~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+.++...+...... .+..+.... ....+|+|||++.+..+ ...+..|+..++.....+. .+|+++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~~~~--~~~DlL~iDDi~~l~~~-----------~~~q~~lf~l~n~~~~~~k-~li~ts 137 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFKDRL--RSADLLIIDDIQFLAGK-----------QRTQEELFHLFNRLIESGK-QLILTS 137 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHH--CTSSEEEEETGGGGTTH-----------HHHHHHHHHHHHHHHHTTS-EEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhhhhh--hcCCEEEEecchhhcCc-----------hHHHHHHHHHHHHHHhhCC-eEEEEe
Confidence 98887665432221 112222222 23479999999998644 1234555555555544444 445555
Q ss_pred eCCCCc---ccHHHHhhccc--ccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 011305 354 TNLPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 354 Tn~p~~---Ld~al~rRf~~--~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A 423 (489)
...|.. +++.+.+||.. .+.+..|+.++|..|++..+...+...+.+ ++.|++... -+.++|..+++..
T Consensus 138 ~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 138 DRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp SS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred CCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 566654 67899999854 678888999999999999998887776555 344566554 4666766655543
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=153.54 Aligned_cols=206 Identities=19% Similarity=0.213 Sum_probs=140.1
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-----hhcc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-----KWRG 284 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-----~~~g 284 (489)
.|+|++++++.+.+.+......- .....|..++||+||||||||.+|+++|+.++.+++.++++++.. ...|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 48999999999999886532110 001234457999999999999999999999999999999987643 2222
Q ss_pred chHHH-----HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-cc-------CCCcEEEE
Q 011305 285 DSEKL-----IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQ-------SDELVFVL 351 (489)
Q Consensus 285 ~~~~~-----l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-~~-------~~~~viVI 351 (489)
..... -..+....+....+||||||+|.+.+. +++.|++.|+.- .. .-.++++|
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI 602 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTDNNGRKADFRNVVLV 602 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeecCCCceecCCCcEEE
Confidence 11100 112233334455689999999998543 677788888732 11 12467889
Q ss_pred EEeCCC-------------------------CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-------CCCCCCC
Q 011305 352 AATNLP-------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTGEESL 399 (489)
Q Consensus 352 atTn~p-------------------------~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-------~~~~~~~ 399 (489)
+|||.- ..+.|+++.|++.++.|++.+.++..+|+...+.. .+.....
T Consensus 603 ~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~ 682 (758)
T PRK11034 603 MTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEV 682 (758)
T ss_pred EeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceE
Confidence 999832 12568888999999999999999999999876632 2333222
Q ss_pred C---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHH
Q 011305 400 P---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 400 d---l~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
+ ++.|++.. ..+-.+.++.+++.-...++.+.
T Consensus 683 ~~~~~~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~~ 719 (758)
T PRK11034 683 SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANE 719 (758)
T ss_pred CHHHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 2 44455432 34556888888887777776654
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-13 Score=150.33 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=127.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--------- 269 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--------- 269 (489)
+.+++.+.+|++|+|++.+++.|+..+... ..++.+||+||+|+|||++|+++|+.+++.
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 345678889999999999999998877541 234668999999999999999999988532
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 329 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~ 329 (489)
++.++.+. ...-..++.+.+.+.. ....|++|||+|.|.. .
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~------~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~-------------~ 135 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAAS------HTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST-------------A 135 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-------------H
Confidence 12222211 0112233444433322 2346999999998743 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHh
Q 011305 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT 408 (489)
Q Consensus 330 i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t 408 (489)
..+.|+..++.. ...+++|.+++.++.+.+.+++|+ ..+.|+.++..+...++...+...+...+. .+..++..+
T Consensus 136 a~naLLk~LEep---p~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s 211 (585)
T PRK14950 136 AFNALLKTLEEP---PPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA 211 (585)
T ss_pred HHHHHHHHHhcC---CCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 356788888743 234556667777888888999999 458899999999999998888766654333 255566655
Q ss_pred cCCcHHHHHHHHH
Q 011305 409 EGYSGSDIRLVSK 421 (489)
Q Consensus 409 ~G~sg~Di~~l~~ 421 (489)
.| +.+++.+.++
T Consensus 212 ~G-dlr~al~~Le 223 (585)
T PRK14950 212 TG-SMRDAENLLQ 223 (585)
T ss_pred CC-CHHHHHHHHH
Confidence 54 5555544444
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=149.33 Aligned_cols=177 Identities=21% Similarity=0.232 Sum_probs=126.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
..++++.+|++++|++.+++.|...+... ...+++||+||+|+|||++|+++|+.+++.
T Consensus 7 ~~kyRP~~f~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~C 75 (620)
T PRK14948 7 HHKYRPQRFDELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPC 75 (620)
T ss_pred HHHhCCCcHhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCC
Confidence 34567788999999999999999887652 123689999999999999999999998652
Q ss_pred ----------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHH
Q 011305 270 ----------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRR 329 (489)
Q Consensus 270 ----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~ 329 (489)
++.++.. ....-..++.+...+.. ....|++|||+|.|.. .
T Consensus 76 g~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~-------------~ 136 (620)
T PRK14948 76 GKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST-------------A 136 (620)
T ss_pred cccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-------------H
Confidence 2222221 11233456666665542 2346999999998842 2
Q ss_pred HHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHh
Q 011305 330 LKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERT 408 (489)
Q Consensus 330 i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t 408 (489)
..+.|+..++. ....+++|++|+++..+.+.+++|+ ..+.|+.++.++....+...+.+.+...+ ..+..+++.+
T Consensus 137 a~naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 137 AFNALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred HHHHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 45788888873 3344666777788888999999999 55889888888888888777766554433 2355566666
Q ss_pred cC
Q 011305 409 EG 410 (489)
Q Consensus 409 ~G 410 (489)
.|
T Consensus 213 ~G 214 (620)
T PRK14948 213 QG 214 (620)
T ss_pred CC
Confidence 55
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=145.08 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=113.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
+.++|||++|+|||+|++++++++ +..++++++.++...+...........|... -..+.+|+|||++.+..+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-y~~~DLLlIDDIq~l~gke 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-YREMDILLVDDIQFLEDKE 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-hhcCCEEEEehhccccCCH
Confidence 459999999999999999999987 5688999998887665533222222223322 2345899999999886542
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-C---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcC
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p-~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
. ....|++.++.+...+..+ || |++.+ . .+++.|++||. ..+.+..|+.+.|..||+..+.
T Consensus 394 ~-----------tqeeLF~l~N~l~e~gk~I-II-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~ 460 (617)
T PRK14086 394 S-----------TQEEFFHTFNTLHNANKQI-VL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAV 460 (617)
T ss_pred H-----------HHHHHHHHHHHHHhcCCCE-EE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHH
Confidence 1 1233444444333333333 33 55554 3 47889999995 5558888999999999999998
Q ss_pred CCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 392 SQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 392 ~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
...+..+.+ ++.|+....+ +.++|..++....
T Consensus 461 ~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~ 493 (617)
T PRK14086 461 QEQLNAPPEVLEFIASRISR-NIRELEGALIRVT 493 (617)
T ss_pred hcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence 877765544 4567776653 5677776666543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.7e-13 Score=149.04 Aligned_cols=204 Identities=23% Similarity=0.250 Sum_probs=139.5
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~------- 281 (489)
+.|+|++.+++.+.+.+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g---~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~li 530 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAG---LGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLI 530 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcC---CCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHh
Confidence 45899999999998877642110 01112233468999999999999999999999999999999886532
Q ss_pred -----hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcE
Q 011305 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELV 348 (489)
Q Consensus 282 -----~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~v 348 (489)
|+|... ...+....+....+||+|||+|.+.+. +.+.|++.++.-. ..-.++
T Consensus 531 g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~d~~g~~vd~~~~ 595 (731)
T TIGR02639 531 GAPPGYVGFEQ--GGLLTEAVRKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLTDNNGRKADFRNV 595 (731)
T ss_pred cCCCCCcccch--hhHHHHHHHhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeeecCCCcccCCCCC
Confidence 222111 122344445566689999999987543 5677888887431 112357
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-------CCC
Q 011305 349 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 396 (489)
Q Consensus 349 iVIatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~ 396 (489)
++|+|||... .+.|+++.|++.++.|.+.+.++..+|++..+... +..
T Consensus 596 iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~ 675 (731)
T TIGR02639 596 ILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIK 675 (731)
T ss_pred EEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence 7888887641 15678888999999999999999999999887531 111
Q ss_pred CCC---CHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHH
Q 011305 397 ESL---PYDLLVER--TEGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 397 ~~~---dl~~La~~--t~G~sg~Di~~l~~~A~~~a~rR 430 (489)
... .++.|++. ...+..+.|+.+++.....++..
T Consensus 676 l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 676 LELTDDAKKYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred EEeCHHHHHHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 111 24446654 34566788888777777666554
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.49 E-value=9.6e-13 Score=130.74 Aligned_cols=134 Identities=25% Similarity=0.281 Sum_probs=93.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------hhhhhccchHHH-HHH-------------------HHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL-IKV-------------------LFE 295 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------l~~~~~g~~~~~-l~~-------------------lf~ 295 (489)
..++||+||||||||++|+++|+.+|.+++.++|.. +.+.+.+..... ... .+.
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 468999999999999999999999999999998753 333333211111 111 111
Q ss_pred HHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------------cCCCcEEEEEEeCCCC----
Q 011305 296 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------------QSDELVFVLAATNLPW---- 358 (489)
Q Consensus 296 ~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------------~~~~~viVIatTn~p~---- 358 (489)
.|.. .+.+|+|||++.+.++ +++.|+..++.-. .....+.||+|+|...
T Consensus 101 ~A~~-~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~ 166 (262)
T TIGR02640 101 LAVR-EGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGV 166 (262)
T ss_pred HHHH-cCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccce
Confidence 2222 3479999999987543 4455666664211 0113466888999762
Q ss_pred -cccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 359 -ELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 359 -~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
.+++++.+|| ..+.++.|+.++..+|++...
T Consensus 167 ~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 167 HETQDALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred ecccHHHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 4789999999 679999999999999999875
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.2e-12 Score=139.48 Aligned_cols=170 Identities=13% Similarity=0.197 Sum_probs=111.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhhhccchHH---HHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEK---LIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~~~g~~~~---~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
..+++|||++|+|||+|++++++++ +..++++++.++...+...... .+..+.... ..+.+|+|||++.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~--~~~dvLiIDDiq~l 218 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEI--CQNDVLIIDDVQFL 218 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh--ccCCEEEEeccccc
Confidence 3579999999999999999999965 4788999998887665543222 122221222 34579999999988
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCc---ccHHHHhhcc--cccccCCCCHHHHHHHHH
Q 011305 314 ISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWE---LDAAMLRRLE--KRILVPLPDTEARRAMFE 387 (489)
Q Consensus 314 ~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~ 387 (489)
.++. .....|+..++.....+. . +|.|++. |.. +++.+.+||. ..+.+..|+.++|.+|++
T Consensus 219 ~~k~-----------~~~e~lf~l~N~~~~~~k-~-iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 219 SYKE-----------KTNEIFFTIFNNFIENDK-Q-LFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCH-----------HHHHHHHHHHHHHHHcCC-c-EEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 5431 122334444443333333 2 3445544 433 6789999995 566778899999999999
Q ss_pred HhcCCCCCC--CC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 388 SLLPSQTGE--ES-LPYDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 388 ~~l~~~~~~--~~-~dl~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
..+...+.. .+ .-++.|+..+.| +.+.+..++......+
T Consensus 286 ~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a 327 (450)
T PRK14087 286 KEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWS 327 (450)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 998765532 22 235556666664 6677777777665433
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.7e-13 Score=144.75 Aligned_cols=187 Identities=18% Similarity=0.205 Sum_probs=131.4
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------ 268 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~------------ 268 (489)
+++.+.+|++|+|++.+++.|...+... ..++.+|||||+|+|||++|+.+|+.+.+
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~ 77 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNE 77 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCc
Confidence 3567789999999999999999887541 23467999999999999999999998753
Q ss_pred -------------cEEEEeccchhhhhccchHHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 269 -------------TFFNISASSVVSKWRGDSEKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 269 -------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
.++.+++.+. .....++.+...+... ...|++|||+|.+.. ...
T Consensus 78 C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~ 138 (614)
T PRK14971 78 CESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAF 138 (614)
T ss_pred chHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-------------HHH
Confidence 2233333211 1123455555544322 245999999998843 245
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..|+.. +..+++|.+|+.+..+-+.+++|+ ..+.|..++.++....++..+...+...+. .++.|+..+.|
T Consensus 139 naLLK~LEep---p~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g 214 (614)
T PRK14971 139 NAFLKTLEEP---PSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG 214 (614)
T ss_pred HHHHHHHhCC---CCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 7788888743 334556667777788999999999 559999999999999999888777765443 36667776654
Q ss_pred CcHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKE 422 (489)
Q Consensus 411 ~sg~Di~~l~~~ 422 (489)
+.+++..++..
T Consensus 215 -dlr~al~~Lek 225 (614)
T PRK14971 215 -GMRDALSIFDQ 225 (614)
T ss_pred -CHHHHHHHHHH
Confidence 44444444433
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=136.27 Aligned_cols=161 Identities=19% Similarity=0.271 Sum_probs=102.2
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcE--EEEec
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTF--FNISA 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~--i~v~~ 275 (489)
...|++|+|++.+++.+.-.+.. +...|+||+|+||||||++|+++++-+ +.++ ..+.+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~ 71 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAID------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPED 71 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhc------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccC
Confidence 45699999999999988854322 122689999999999999999999988 3321 11100
Q ss_pred -c--------chh---------------hhhccch--HHHH---HHHHHHH--HhcCCcEEEEchhhhHHhhhcccchhh
Q 011305 276 -S--------SVV---------------SKWRGDS--EKLI---KVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEH 324 (489)
Q Consensus 276 -s--------~l~---------------~~~~g~~--~~~l---~~lf~~A--~~~~p~VL~IDEiD~l~~~r~~~~~~~ 324 (489)
. ++. ....|.. ++.+ ...|..- .....++|||||++.+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~-------- 143 (334)
T PRK13407 72 CPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH-------- 143 (334)
T ss_pred CcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH--------
Confidence 0 000 0011110 0000 0001100 0112269999999988543
Q ss_pred HHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCCCH-HHHHHHHHHhc
Q 011305 325 EASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRAMFESLL 390 (489)
Q Consensus 325 ~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~Pd~-~eR~~IL~~~l 390 (489)
+++.|++.|+.-. ..+..+++++++|..+ .+.+++++||...+.++.|.. ++|.+|++...
T Consensus 144 -----~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 144 -----IVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred -----HHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhh
Confidence 5566777775321 1234577777777544 489999999999999988866 89999998854
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=5e-12 Score=123.46 Aligned_cols=144 Identities=23% Similarity=0.269 Sum_probs=93.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~ 319 (489)
..++|+||+|||||++++++++++ +....+++..++.. .+...++... +..+|+|||++.+......
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~l~--~~dlLiIDDi~~l~~~~~~ 111 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEALE--GRSLVALDGLESIAGQRED 111 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHHHh--cCCEEEEeCcccccCChHH
Confidence 459999999999999999998875 56677777655432 2223333332 3479999999988643211
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-CCCc---ccHHHHhhc--ccccccCCCCHHHHHHHHHHhcCCC
Q 011305 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWE---LDAAMLRRL--EKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 320 ~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn-~p~~---Ld~al~rRf--~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
...++..++.....+ ..||+|+| .|.. ++++++||| ...+.++.|+.+++.+|++..+...
T Consensus 112 -----------~~~lf~l~n~~~~~~--~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~ 178 (233)
T PRK08727 112 -----------EVALFDFHNRARAAG--ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRR 178 (233)
T ss_pred -----------HHHHHHHHHHHHHcC--CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHc
Confidence 122333333222222 22444554 5554 479999997 4667899999999999999877655
Q ss_pred CCCCCC-CHHHHHHHhc
Q 011305 394 TGEESL-PYDLLVERTE 409 (489)
Q Consensus 394 ~~~~~~-dl~~La~~t~ 409 (489)
....+. .++.|++.+.
T Consensus 179 ~l~l~~e~~~~La~~~~ 195 (233)
T PRK08727 179 GLALDEAAIDWLLTHGE 195 (233)
T ss_pred CCCCCHHHHHHHHHhCC
Confidence 444333 3566777655
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=114.12 Aligned_cols=138 Identities=40% Similarity=0.629 Sum_probs=91.7
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHH
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKL 289 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~ 289 (489)
|.+...+.+...+.. ....+++++||||||||++++.+++.+ +.+++.+++.+............
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 455666666655432 234789999999999999999999998 89999999877654433221111
Q ss_pred ---HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---CCCcEEEEEEeCCCC--ccc
Q 011305 290 ---IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPW--ELD 361 (489)
Q Consensus 290 ---l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~---~~~~viVIatTn~p~--~Ld 361 (489)
............+.+|+|||++.+... ....++..+..... ....+.+|+++|... .++
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~ 136 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLD 136 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcC
Confidence 122233344556799999999987322 12334444443322 134577888888776 688
Q ss_pred HHHHhhcccccccC
Q 011305 362 AAMLRRLEKRILVP 375 (489)
Q Consensus 362 ~al~rRf~~~i~~~ 375 (489)
+.+.+||+..+.++
T Consensus 137 ~~~~~r~~~~i~~~ 150 (151)
T cd00009 137 RALYDRLDIRIVIP 150 (151)
T ss_pred hhHHhhhccEeecC
Confidence 89999998777765
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.8e-12 Score=123.67 Aligned_cols=156 Identities=17% Similarity=0.167 Sum_probs=100.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~ 319 (489)
.+++|+||+|||||+|++++++++ +..++++++.++.... ..+.+.... ..+|+|||++.+.++..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~~--~d~LiiDDi~~~~~~~~- 114 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLEQ--YELVCLDDLDVIAGKAD- 114 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhhh--CCEEEEechhhhcCChH-
Confidence 679999999999999999999865 6778888887765431 122222222 26999999998854321
Q ss_pred cchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCC
Q 011305 320 ARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 320 ~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
....|++.++.....+ ..+|++++..|.. ..+.++|||. ..+.+..|+.+++..+++..+...+
T Consensus 115 ----------~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~ 183 (234)
T PRK05642 115 ----------WEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRG 183 (234)
T ss_pred ----------HHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcC
Confidence 1233555554333333 3556666655543 4689999994 5566788999999999996655444
Q ss_pred CCCCC-CHHHHHHHhcCCcHHHHHHHHH
Q 011305 395 GEESL-PYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 395 ~~~~~-dl~~La~~t~G~sg~Di~~l~~ 421 (489)
...+. -++.|++...+ +.+.+..++.
T Consensus 184 ~~l~~ev~~~L~~~~~~-d~r~l~~~l~ 210 (234)
T PRK05642 184 LHLTDEVGHFILTRGTR-SMSALFDLLE 210 (234)
T ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 43332 24556665553 4445544444
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-12 Score=130.85 Aligned_cols=165 Identities=22% Similarity=0.304 Sum_probs=116.6
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----EEEEeccchhhhh
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-----FFNISASSVVSKW 282 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~-----~i~v~~s~l~~~~ 282 (489)
-+.+.+.++..+++...+...+. ...|.+++++||||||||.+++.+++++..+ +++|||....+.+
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~ 87 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPY 87 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHH
Confidence 34588999999999988765543 2334579999999999999999999998544 8999997654332
Q ss_pred c---------------cch-HHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 283 R---------------GDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 283 ~---------------g~~-~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
. |.. ......+++.... ....||++||+|.|....+ .++-.|+..... ..
T Consensus 88 ~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~----------~~LY~L~r~~~~---~~ 154 (366)
T COG1474 88 QVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG----------EVLYSLLRAPGE---NK 154 (366)
T ss_pred HHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc----------hHHHHHHhhccc---cc
Confidence 1 111 1222333333332 3456899999999976532 244444444332 24
Q ss_pred CcEEEEEEeCCCC---cccHHHHhhc-ccccccCCCCHHHHHHHHHHhcCCC
Q 011305 346 ELVFVLAATNLPW---ELDAAMLRRL-EKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 346 ~~viVIatTn~p~---~Ld~al~rRf-~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
..+.+|+.+|..+ .+++.+.+++ ...|.||+++.+|...|++......
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~ 206 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG 206 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh
Confidence 5688899999874 4889999977 3558999999999999999988643
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=127.90 Aligned_cols=187 Identities=17% Similarity=0.153 Sum_probs=121.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------------- 269 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~------------- 269 (489)
..+.++++|+|++.+++.|.+.+... ..++.+||+||+|+||+++|.++|+.+-..
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 35668999999999999999887652 335679999999999999999999987211
Q ss_pred ---------------------EEEEecc--chhhhhcc-chHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccc
Q 011305 270 ---------------------FFNISAS--SVVSKWRG-DSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 270 ---------------------~i~v~~s--~l~~~~~g-~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
++.+... +-.++... -.-..++.+...+ ....|.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 1111110 00000000 0112234433332 234567999999998843
Q ss_pred hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCH
Q 011305 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY 401 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl 401 (489)
...+.|++.++. .+..+++|.+|+.++.+.+.+++|+ ..+.++.|+.++-.+++...... ..+..+
T Consensus 156 -------~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~~~---~~~~~~ 221 (365)
T PRK07471 156 -------NAANALLKVLEE---PPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAGPD---LPDDPR 221 (365)
T ss_pred -------HHHHHHHHHHhc---CCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhccc---CCHHHH
Confidence 355778888873 3334567778999999999999999 66999999999999998876421 111122
Q ss_pred HHHHHHhcCCcHHHHHHHHH
Q 011305 402 DLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 402 ~~La~~t~G~sg~Di~~l~~ 421 (489)
..++..+.| +++....+..
T Consensus 222 ~~l~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 222 AALAALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHHHHcCC-CHHHHHHHhc
Confidence 455555555 4444444443
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=131.24 Aligned_cols=162 Identities=20% Similarity=0.270 Sum_probs=104.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEEEe--
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFNIS-- 274 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-------~~~i~v~-- 274 (489)
+...|++|+|++++|..|...+..+ ...++||.||+|||||++||++++.+. .||....
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4457999999999999998776553 236899999999999999999988762 2232000
Q ss_pred ----ccchhhhh-------------------ccchHHH------HHHHHHHHH---------hcCCcEEEEchhhhHHhh
Q 011305 275 ----ASSVVSKW-------------------RGDSEKL------IKVLFELAR---------HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 275 ----~s~l~~~~-------------------~g~~~~~------l~~lf~~A~---------~~~p~VL~IDEiD~l~~~ 316 (489)
+++..+.. .|.++.. +...+.... ....++|||||++.+.+.
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~ 159 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH 159 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH
Confidence 00000000 0111111 111111110 112379999999998654
Q ss_pred hcccchhhHHHHHHHHHHHHHhcC---------Cc-cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCCC-HHHHHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMDG---------LT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPD-TEARRA 384 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg---------~~-~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~Pd-~~eR~~ 384 (489)
+++.|+..|+. .. ..+.++++|+|.|..+ .+.+++.+||...+.+..|+ .+++.+
T Consensus 160 -------------~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~ 226 (350)
T CHL00081 160 -------------LVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVK 226 (350)
T ss_pred -------------HHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHH
Confidence 44556666642 11 1234566776666544 49999999999999999997 699999
Q ss_pred HHHHhc
Q 011305 385 MFESLL 390 (489)
Q Consensus 385 IL~~~l 390 (489)
|++...
T Consensus 227 il~~~~ 232 (350)
T CHL00081 227 IVEQRT 232 (350)
T ss_pred HHHhhh
Confidence 999864
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.2e-12 Score=127.16 Aligned_cols=172 Identities=15% Similarity=0.174 Sum_probs=116.1
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--------cEEEEeccch
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------TFFNISASSV 278 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~--------~~i~v~~s~l 278 (489)
+|++|+|++.+++.+...+.. ...++.+||+||+|+|||++|+++|+.+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~-----------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK-----------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc-----------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 589999999999999988743 233467899999999999999999998732 122332210
Q ss_pred hhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 279 VSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.. -.-..++.+.+.+. .....|++||++|.+.. ...+.|+..++. .+..+++|.+|
T Consensus 70 -~~~--i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~-------------~a~naLLK~LEe---pp~~t~~il~~ 130 (313)
T PRK05564 70 -KKS--IGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE-------------QAQNAFLKTIEE---PPKGVFIILLC 130 (313)
T ss_pred -CCC--CCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH-------------HHHHHHHHHhcC---CCCCeEEEEEe
Confidence 111 11223444444332 23446999999988843 245788998873 34445666677
Q ss_pred CCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 011305 355 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSG 413 (489)
Q Consensus 355 n~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg 413 (489)
++++.+.+.++||+ ..+.|+.|+.++....++..+.. . ....++.++..+.|-.+
T Consensus 131 ~~~~~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~~~~~--~-~~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 131 ENLEQILDTIKSRC-QIYKLNRLSKEEIEKFISYKYND--I-KEEEKKSAIAFSDGIPG 185 (313)
T ss_pred CChHhCcHHHHhhc-eeeeCCCcCHHHHHHHHHHHhcC--C-CHHHHHHHHHHcCCCHH
Confidence 88999999999999 57999999999988888765431 1 12224455555555333
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-12 Score=130.70 Aligned_cols=239 Identities=17% Similarity=0.209 Sum_probs=146.5
Q ss_pred CCCCCCCccccCcHH---HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE
Q 011305 202 GSPDVKWESIKGLEN---AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 273 (489)
Q Consensus 202 ~~~~~~~~dliG~e~---~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v 273 (489)
..+..+|++++.-.. +......+...+ ..+...++||||+|+|||+|++|++++. +..++++
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~ 149 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYL 149 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEec
Confidence 456778888654332 333333322221 1234679999999999999999999987 4568888
Q ss_pred eccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+...+...++......-..-|+.-. +-.+|+|||++.+.++. +.+.++.+.+..+...+. -+|+++
T Consensus 150 ~se~f~~~~v~a~~~~~~~~Fk~~y--~~dlllIDDiq~l~gk~-----------~~qeefFh~FN~l~~~~k-qIvlts 215 (408)
T COG0593 150 TSEDFTNDFVKALRDNEMEKFKEKY--SLDLLLIDDIQFLAGKE-----------RTQEEFFHTFNALLENGK-QIVLTS 215 (408)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHhh--ccCeeeechHhHhcCCh-----------hHHHHHHHHHHHHHhcCC-EEEEEc
Confidence 8888776665443332233344433 33799999999997652 234455555555544444 445555
Q ss_pred eCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 354 TNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 354 Tn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
...|.. +.+.++|||. ..+.+.+|+.+.|..||+..+...+...+.+ +..+++... -+.+++..++......+
T Consensus 216 dr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a 294 (408)
T COG0593 216 DRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFA 294 (408)
T ss_pred CCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHH
Confidence 566655 5689999995 5567788999999999999887777775554 455666555 45667766665544433
Q ss_pred HHHHHH-HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 428 LRRLMV-LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 428 ~rR~~~-~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
.-.-.. ......+++.+....... +|.++|.+.+.++-
T Consensus 295 ~~~~~~iTi~~v~e~L~~~~~~~~~-itie~I~~~Va~~y 333 (408)
T COG0593 295 LFTKRAITIDLVKEILKDLLRAGEK-ITIEDIQKIVAEYY 333 (408)
T ss_pred HhcCccCcHHHHHHHHHHhhccccc-CCHHHHHHHHHHHh
Confidence 221100 000111111111111125 89999998887663
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=126.11 Aligned_cols=194 Identities=15% Similarity=0.152 Sum_probs=123.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEE-e
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNI-S 274 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-------~~i~v-~ 274 (489)
..+..+++|+|++.+++.+...+... ..++.+||+||+|+|||++|+.+|+.+.. +.... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 35667999999999999999987542 33467999999999999999999998844 11100 1
Q ss_pred c---c-----------chh---hh--hc------cchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH
Q 011305 275 A---S-----------SVV---SK--WR------GDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 275 ~---s-----------~l~---~~--~~------g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
| . ++. .. .. .-.-..++.+.+.. ......|++|||+|.+...
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~--------- 156 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN--------- 156 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH---------
Confidence 1 0 000 00 00 00112233333222 2234569999999998432
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLV 405 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La 405 (489)
..+.||+.++.. +..+++|..|+.++.+.+.+++|+ ..+.+++|+.++-..+++....... -.+..+..++
T Consensus 157 ----aanaLLk~LEEp---p~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~~~~~~-~~~~~~~~i~ 227 (351)
T PRK09112 157 ----AANAILKTLEEP---PARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHLGSSQG-SDGEITEALL 227 (351)
T ss_pred ----HHHHHHHHHhcC---CCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHhhcccC-CCHHHHHHHH
Confidence 456788888743 233455556788888899999999 6899999999999999988432222 1112244566
Q ss_pred HHhcCCcHHHHHHHHHHHHhH
Q 011305 406 ERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 406 ~~t~G~sg~Di~~l~~~A~~~ 426 (489)
..+.| +++....+.......
T Consensus 228 ~~s~G-~pr~Al~ll~~~~~~ 247 (351)
T PRK09112 228 QRSKG-SVRKALLLLNYGGLE 247 (351)
T ss_pred HHcCC-CHHHHHHHHhcCcHH
Confidence 65554 444444555444433
|
|
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=118.17 Aligned_cols=174 Identities=16% Similarity=0.172 Sum_probs=104.9
Q ss_pred CCCCCCccccCcH---HHHHHHHHHHHccccCchhhcccCCC-CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 203 SPDVKWESIKGLE---NAKRLLKEAVVMPIKYPKYFTGLLSP-WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 203 ~~~~~~~dliG~e---~~k~~L~e~v~~~l~~~~~~~~~~~~-~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+..+|++++--+ .+...++++...+ ...+ ...++||||||||||+|++++++..+..++ +....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh
Confidence 3556788865433 3555555543211 0112 267999999999999999999998875332 21110
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
....+ ....+|+|||+|.+- . ..|+..++.+...+ ..++++++..|.
T Consensus 79 -----------~~~~~-----~~~d~lliDdi~~~~-------------~---~~lf~l~N~~~e~g-~~ilits~~~p~ 125 (214)
T PRK06620 79 -----------NEEIL-----EKYNAFIIEDIENWQ-------------E---PALLHIFNIINEKQ-KYLLLTSSDKSR 125 (214)
T ss_pred -----------chhHH-----hcCCEEEEeccccch-------------H---HHHHHHHHHHHhcC-CEEEEEcCCCcc
Confidence 00111 123799999998441 0 12333332222233 356677766665
Q ss_pred c--ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHH
Q 011305 359 E--LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 359 ~--Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~ 422 (489)
. + +++++|+. ..+.+..|+.+++..+++..+...+...+.+ ++.|++...| +.+.+..++..
T Consensus 126 ~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~ 192 (214)
T PRK06620 126 NFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILEN 192 (214)
T ss_pred ccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 4 6 89999995 3588899999999999999887655544433 5556666653 44444444443
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-13 Score=143.44 Aligned_cols=222 Identities=25% Similarity=0.321 Sum_probs=148.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
.....+|++|+|.......+.+.+... ...+.+|||.|.+||||..+|++|.+.+ +.||+.+||..+
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAi 307 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRI----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAI 307 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhh----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccC
Confidence 445678999999999888888776542 2445789999999999999999999977 789999999765
Q ss_pred hhhh---------ccc----hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc------
Q 011305 279 VSKW---------RGD----SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD------ 339 (489)
Q Consensus 279 ~~~~---------~g~----~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld------ 339 (489)
.... .|. ...--..+|+.|.. +.||+|||..+... ++..||.-++
T Consensus 308 Pe~LlESELFGye~GAFTGA~~~GK~GlfE~A~g---GTLFLDEIgempl~-------------LQaKLLRVLQEkei~r 371 (560)
T COG3829 308 PETLLESELFGYEKGAFTGASKGGKPGLFELANG---GTLFLDEIGEMPLP-------------LQAKLLRVLQEKEIER 371 (560)
T ss_pred CHHHHHHHHhCcCCccccccccCCCCcceeeccC---CeEEehhhccCCHH-------------HHHHHHHHHhhceEEe
Confidence 4221 111 11112345666555 79999999888654 3444555544
Q ss_pred --CCccCCCcEEEEEEeCCCCcccHHHHh---------hcccccccCCCCHHHHHHHHHH----hcCCCCCCCCCCHHHH
Q 011305 340 --GLTQSDELVFVLAATNLPWELDAAMLR---------RLEKRILVPLPDTEARRAMFES----LLPSQTGEESLPYDLL 404 (489)
Q Consensus 340 --g~~~~~~~viVIatTn~p~~Ld~al~r---------Rf~~~i~~~~Pd~~eR~~IL~~----~l~~~~~~~~~dl~~L 404 (489)
+.....-.|-||+|||+. +.+++.. |. .++.+..|...+|.+=+.. ++.+... ..
T Consensus 372 vG~t~~~~vDVRIIAATN~n--L~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-------~~ 441 (560)
T COG3829 372 VGGTKPIPVDVRIIAATNRN--LEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSR-------RY 441 (560)
T ss_pred cCCCCceeeEEEEEeccCcC--HHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHH-------Hc
Confidence 333334568899999984 3333333 44 3456677877777653333 2222111 11
Q ss_pred HHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHH-HHHhh
Q 011305 405 VERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE-IALKN 464 (489)
Q Consensus 405 a~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~-~AL~~ 464 (489)
.+...|.++..+..|.+..|.+++|.+.+.++..-...+.+.. |+.+|+- .++..
T Consensus 442 ~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~~~~~~~-----I~~~~lp~~~l~~ 497 (560)
T COG3829 442 GRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNLVESDGL-----IDADDLPAFALEE 497 (560)
T ss_pred CCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhccCCcce-----eehhhcchhhhcc
Confidence 2235678888999999999999999998888876654444432 6677766 44444
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-11 Score=117.08 Aligned_cols=192 Identities=18% Similarity=0.208 Sum_probs=134.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+.+.+.+|+|.+..|+.|.+....+.. ..|..+|||+|..|||||+++||+.++. +..+++|+..++.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~--------G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~ 125 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAE--------GLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA 125 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHc--------CCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh
Confidence 3457789999999999999886655442 3456899999999999999999999988 6779999988774
Q ss_pred hhhccchHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC-CccCCCcEEEEEEeCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-LTQSDELVFVLAATNLP 357 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg-~~~~~~~viVIatTn~p 357 (489)
. +-.+++..+.. ..-|||+||+-- .+++. -...|-..++| +...+.+|++.+|+|+.
T Consensus 126 ~---------Lp~l~~~Lr~~~~kFIlFcDDLSF---------e~gd~---~yK~LKs~LeG~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 126 T---------LPDLVELLRARPEKFILFCDDLSF---------EEGDD---AYKALKSALEGGVEGRPANVLFYATSNRR 184 (287)
T ss_pred h---------HHHHHHHHhcCCceEEEEecCCCC---------CCCch---HHHHHHHHhcCCcccCCCeEEEEEecCCc
Confidence 2 23344444432 346999999821 01111 12233344554 46778899999999987
Q ss_pred CcccH----------------------HHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHH----HHHHhcC
Q 011305 358 WELDA----------------------AMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDL----LVERTEG 410 (489)
Q Consensus 358 ~~Ld~----------------------al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~----La~~t~G 410 (489)
..++. .+-+||...+.|+.+++++-..|+..+++..++..+. .++. -|..-.|
T Consensus 185 HLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~ 264 (287)
T COG2607 185 HLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGG 264 (287)
T ss_pred ccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCC
Confidence 54321 2334999999999999999999999999888776532 2322 2344556
Q ss_pred CcHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEA 423 (489)
Q Consensus 411 ~sg~Di~~l~~~A 423 (489)
-||+--.+.++..
T Consensus 265 RSGR~A~QF~~~~ 277 (287)
T COG2607 265 RSGRVAWQFIRDL 277 (287)
T ss_pred CccHhHHHHHHHH
Confidence 7777665555543
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=141.33 Aligned_cols=203 Identities=22% Similarity=0.230 Sum_probs=135.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---- 281 (489)
+.|+|++.+.+.+.+.+...... ......|...+||+||||||||.+|+++|+.+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 46899999999999988653210 00011232358999999999999999999998 457899998876432
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c------CC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~------~~ 345 (489)
|+|..+. ..+....+...++||+|||+|...+ .+.+.|++.++.-. . .-
T Consensus 643 ~l~g~~~gyvg~~~~--g~L~~~v~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~Gr~vd~ 707 (852)
T TIGR03345 643 RLKGSPPGYVGYGEG--GVLTEAVRRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEGREIDF 707 (852)
T ss_pred cccCCCCCccccccc--chHHHHHHhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCCcEEec
Confidence 3332211 1233444556779999999987643 25566777776331 1 11
Q ss_pred CcEEEEEEeCCCC-----------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC---
Q 011305 346 ELVFVLAATNLPW-----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ--- 393 (489)
Q Consensus 346 ~~viVIatTn~p~-----------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~--- 393 (489)
.+.+||+|||... .+.|++++|++ .+.|.+.+.++..+|+...+...
T Consensus 708 ~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r 786 (852)
T TIGR03345 708 KNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR 786 (852)
T ss_pred cccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 4578888988521 14577888996 78999999999999998876432
Q ss_pred -----CCCCCC---CHHHHHHHhcC--CcHHHHHHHHHHHHhHHHHH
Q 011305 394 -----TGEESL---PYDLLVERTEG--YSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 394 -----~~~~~~---dl~~La~~t~G--~sg~Di~~l~~~A~~~a~rR 430 (489)
+....+ -++.|++...+ |-.+.++.+++.-...++.+
T Consensus 787 l~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 787 LKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred HHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 222222 24556665533 55788888888777666654
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-12 Score=118.47 Aligned_cols=187 Identities=18% Similarity=0.189 Sum_probs=120.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-C----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~----~~~i~v 273 (489)
+++++.+..+.||+|.++....|.-+... ....+++|.|||||||||.+.++|+++ | --+.++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~~------------gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAKE------------GNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHHc------------CCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 67788889999999999999999976543 123589999999999999999999988 2 336778
Q ss_pred eccchhhhhccchHHHHHHHHHHHHh-cCC---cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELARH-HAP---STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~~-~~p---~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~vi 349 (489)
|+++-.+- ......++. |.+-+- ..| .|+++||+|++... .+.+|-..|+-+++.. -
T Consensus 85 NASdeRGI--DvVRn~IK~-FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiyS~tt---R 145 (333)
T KOG0991|consen 85 NASDERGI--DVVRNKIKM-FAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIYSNTT---R 145 (333)
T ss_pred cCcccccc--HHHHHHHHH-HHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHHcccc---h
Confidence 88764332 112233333 433322 222 59999999998644 2233444444333322 2
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
+..++|..+.+-+.+.||| -.+.|...+..+...-+....+..... .+..++.+.-..+| |+++.++
T Consensus 146 FalaCN~s~KIiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~G----DMRQalN 213 (333)
T KOG0991|consen 146 FALACNQSEKIIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQG----DMRQALN 213 (333)
T ss_pred hhhhhcchhhhhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccc----hHHHHHH
Confidence 5668999999999999999 446666666665554444444443333 23335555544443 5544333
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=136.96 Aligned_cols=204 Identities=23% Similarity=0.259 Sum_probs=142.2
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l~~~---- 281 (489)
..|+|++++...+...+..... -+.....|..++||.||+|+|||.+|+++|..+. ..++.+++|++..+
T Consensus 491 ~rViGQd~AV~avs~aIrraRa---GL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARA---GLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhc---CCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 3589999999999988865321 1111234556789999999999999999999995 88999999998754
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-c-------CC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-Q-------SD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-~-------~~ 345 (489)
|+|..+ =..+.+..+.+.++||++|||+.-.++ +.+-||+.+|.-. . .-
T Consensus 568 rLIGaPPGYVGyee--GG~LTEaVRr~PySViLlDEIEKAHpd-------------V~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 568 RLIGAPPGYVGYEE--GGQLTEAVRRKPYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHhCCCCCCceecc--ccchhHhhhcCCCeEEEechhhhcCHH-------------HHHHHHHHhcCCeeecCCCCEEec
Confidence 333222 123455566677799999999887544 7888999987331 1 12
Q ss_pred CcEEEEEEeCCCC----------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC----
Q 011305 346 ELVFVLAATNLPW----------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---- 393 (489)
Q Consensus 346 ~~viVIatTn~p~----------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~---- 393 (489)
.+++||+|||--. .+.|+++.|++.+|.|...+.+...+|+...+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 4688999997421 04577888999999999999999999988876432
Q ss_pred ---CCCCC--C-CHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHH
Q 011305 394 ---TGEES--L-PYDLLVERT--EGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 394 ---~~~~~--~-dl~~La~~t--~G~sg~Di~~l~~~A~~~a~rR 430 (489)
+.... . -.+.|+... ..|-.+-++.+++.-....+.+
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 22211 1 134455543 2456677777776666555544
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=123.21 Aligned_cols=150 Identities=21% Similarity=0.261 Sum_probs=106.6
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------------------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--------------------- 267 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--------------------- 267 (489)
++++|.+.+...+...+...- ..++.+||+||||+|||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~----------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESG----------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHhcC----------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 367788888888887765321 1234599999999999999999999986
Q ss_pred ---CcEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 268 ---TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 268 ---~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
-.++++++++..... .....++.+...... ....|++|||+|.+..+ ..+.++..++
T Consensus 71 ~~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE- 134 (325)
T COG0470 71 GNHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE- 134 (325)
T ss_pred cCCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-
Confidence 467888877654321 123344444443322 23579999999999653 4567888776
Q ss_pred CccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 341 LTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
..+....+|.+||+++.+-+.++||+ ..+.|+.|+........+
T Consensus 135 --ep~~~~~~il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 135 --EPPKNTRFILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred --cCCCCeEEEEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 34455778889999999999999999 558887776666555444
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.34 E-value=3e-11 Score=123.87 Aligned_cols=156 Identities=19% Similarity=0.246 Sum_probs=100.5
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEE--------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFF-------- 271 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i-------- 271 (489)
.|..|+|++++|..|.-.+..+ ...+++|.|+||+|||+++++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999999987655432 23689999999999999999999877 22221
Q ss_pred -EEecc-------------------chhh-----hhccchH--HHH--------HHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 272 -NISAS-------------------SVVS-----KWRGDSE--KLI--------KVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 272 -~v~~s-------------------~l~~-----~~~g~~~--~~l--------~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
..+|. ++.. ...|... +.+ ..++.. ...++|||||++.+.+.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~---A~~GvL~lDEi~~L~~~ 146 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLAR---ANRGILYIDEVNLLEDH 146 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCccee---ccCCEEEecChHhCCHH
Confidence 00000 1100 1112110 000 011111 22379999999988543
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCC---------c-cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCCCH-HHHHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGL---------T-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLPDT-EARRA 384 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~---------~-~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~Pd~-~eR~~ 384 (489)
+++.|+..|+.- . ..+.+++++++.|..+ .+.+++++||...+.++.|+. ++|.+
T Consensus 147 -------------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~e 213 (337)
T TIGR02030 147 -------------LVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVE 213 (337)
T ss_pred -------------HHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHH
Confidence 455666666421 1 1234567777776544 589999999999999999865 88999
Q ss_pred HHHHhc
Q 011305 385 MFESLL 390 (489)
Q Consensus 385 IL~~~l 390 (489)
|++...
T Consensus 214 IL~~~~ 219 (337)
T TIGR02030 214 IVERRT 219 (337)
T ss_pred HHHhhh
Confidence 998854
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.7e-11 Score=132.14 Aligned_cols=211 Identities=19% Similarity=0.172 Sum_probs=139.2
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccc--cCchhhccc--------------------CCCCceEEEEcCCCCcH
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPI--KYPKYFTGL--------------------LSPWKGILLFGPPGTGK 255 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l--~~~~~~~~~--------------------~~~~~~vLL~GppGtGK 255 (489)
.++.++.+..|.||.|.+.+-+.+..++..+- .....+.++ .++.+-+||+||||-||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 45667778889999999999988888876631 111000010 12335688999999999
Q ss_pred HHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 256 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 256 T~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
||||+.+|++.|..+++||+++-.+.. .....+..+...- ...+|..|+|||||.-. +..+
T Consensus 340 TTLAHViAkqaGYsVvEINASDeRt~~--~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-------------~~~V 404 (877)
T KOG1969|consen 340 TTLAHVIAKQAGYSVVEINASDERTAP--MVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-------------RAAV 404 (877)
T ss_pred hHHHHHHHHhcCceEEEecccccccHH--HHHHHHHHHHhhccccccCCCcceEEEecccCCc-------------HHHH
Confidence 999999999999999999998753221 1222222222211 12568999999998543 2234
Q ss_pred HHHHHHhc-------CCccC-----------CCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcC
Q 011305 332 TELLIQMD-------GLTQS-----------DELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 332 ~~LL~~ld-------g~~~~-----------~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
+.++..+. |-... .-...|||.||+... |+|+. -|...+.|+.|......+-|+..+.
T Consensus 405 dvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYa--PaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~ 482 (877)
T KOG1969|consen 405 DVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYA--PALRPLRPFAEIIAFVPPSQSRLVERLNEICH 482 (877)
T ss_pred HHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccc--hhhhhcccceEEEEecCCChhHHHHHHHHHHh
Confidence 44444443 11110 012457899998654 55554 6889999999999888888888887
Q ss_pred CCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 392 SQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 392 ~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
..+...+. .+..|++.+. .||+..++.....+.+
T Consensus 483 rE~mr~d~~aL~~L~el~~----~DIRsCINtLQfLa~~ 517 (877)
T KOG1969|consen 483 RENMRADSKALNALCELTQ----NDIRSCINTLQFLASN 517 (877)
T ss_pred hhcCCCCHHHHHHHHHHhc----chHHHHHHHHHHHHHh
Confidence 77776543 3555666555 5998888876665543
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.8e-11 Score=137.42 Aligned_cols=208 Identities=21% Similarity=0.262 Sum_probs=139.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 282 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~--- 282 (489)
+.|+|++.+++.+.+.+...... ......|...+||+||+|||||++|+++|..+ +.+++.++++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~ 641 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVA 641 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHH
Confidence 56999999999999988653210 00012344679999999999999999999987 5789999998764321
Q ss_pred --ccchHH-----HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCc
Q 011305 283 --RGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 347 (489)
Q Consensus 283 --~g~~~~-----~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~ 347 (489)
.|.... ....+....+....+||+|||++.+.+. +++.|++.++.-. ..-.+
T Consensus 642 ~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l~d~~g~~vd~rn 708 (852)
T TIGR03346 642 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRLTDGQGRTVDFRN 708 (852)
T ss_pred HhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHH-------------HHHHHHHHHhcCceecCCCeEEecCC
Confidence 111000 0122333444555679999999987543 5677777775321 11245
Q ss_pred EEEEEEeCCCCc-------------------------ccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-------CCC
Q 011305 348 VFVLAATNLPWE-------------------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-------QTG 395 (489)
Q Consensus 348 viVIatTn~p~~-------------------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-------~~~ 395 (489)
.+||+|||.... +.|.+..|++.++.|.+++.++..+|+...+.. .+.
T Consensus 709 ~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~ 788 (852)
T TIGR03346 709 TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKI 788 (852)
T ss_pred cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 778899987321 346677799999999999999999998887642 111
Q ss_pred CCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 396 EESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 396 ~~~~d---l~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
...++ ++.|++.. ..+..+.++.+++......+.+.+
T Consensus 789 ~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~~~ 830 (852)
T TIGR03346 789 TLELSDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAKKI 830 (852)
T ss_pred eecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence 22222 44566652 256778999988888887776543
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.33 E-value=9e-12 Score=138.12 Aligned_cols=156 Identities=23% Similarity=0.298 Sum_probs=106.3
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------------------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------------------- 266 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------------------- 266 (489)
.|.+|+|++.++..|.-....+ ...+|||.|++|||||++|+++++.+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4789999999998887655432 12579999999999999999999987
Q ss_pred ---------------CCcEEEEeccchhhhhccch--HHHH--------HHHHHHHHhcCCcEEEEchhhhHHhhhcccc
Q 011305 267 ---------------KTTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 267 ---------------~~~~i~v~~s~l~~~~~g~~--~~~l--------~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
..||+.+.++.......|.. ++.+ ..++..| ..+||||||++.+...
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A---~~GiL~lDEi~~l~~~----- 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEA---HRGILYIDEVNLLDDH----- 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeec---CCCeEEeChhhhCCHH-----
Confidence 35677766554333333321 1111 0111111 2379999999988543
Q ss_pred hhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCC-CcccHHHHhhcccccccCCC-CHHHHHHHHHHh
Q 011305 322 SEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP-WELDAAMLRRLEKRILVPLP-DTEARRAMFESL 389 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p-~~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~~ 389 (489)
+++.|+..|+.-. .....+.+|+|+|.. ..+.+++++||...+.++.+ +.+++.++++..
T Consensus 142 --------~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~ 213 (633)
T TIGR02442 142 --------LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRR 213 (633)
T ss_pred --------HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHH
Confidence 5667777775221 112357788888743 35889999999988888877 467788888765
Q ss_pred c
Q 011305 390 L 390 (489)
Q Consensus 390 l 390 (489)
+
T Consensus 214 ~ 214 (633)
T TIGR02442 214 L 214 (633)
T ss_pred H
Confidence 4
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.4e-11 Score=138.62 Aligned_cols=205 Identities=21% Similarity=0.245 Sum_probs=137.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---- 281 (489)
+.|+|++.+++.+...+...... ......|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 46899999999999887642210 00112333568999999999999999999988 468899998876432
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~ 345 (489)
|+|..+ ...+....+....+||+|||+|.+.+. +.+.|++.++.-. ..-
T Consensus 586 ~l~g~~~gyvg~~~--~~~l~~~~~~~p~~VvllDeieka~~~-------------v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 586 KLIGSPPGYVGYNE--GGQLTEAVRKKPYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred HhcCCCCcccCcCc--cchHHHHHHhCCCeEEEECChhhCCHH-------------HHHHHHHHhccCceecCCCcEEec
Confidence 222111 123444555555689999999987533 6677888887421 112
Q ss_pred CcEEEEEEeCCCCc-------------------------------------ccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 346 ELVFVLAATNLPWE-------------------------------------LDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 346 ~~viVIatTn~p~~-------------------------------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
.+.++|+|||.... +.|++++|++.++.|.+.+.++..+|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 45788889875311 23567889999999999999999999888
Q ss_pred hcCCC-------CCCC--CC-CHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 389 LLPSQ-------TGEE--SL-PYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 389 ~l~~~-------~~~~--~~-dl~~La~~--t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
.+.+. +... +. ..+.|++. ...+-.+.|+.+++.-...++.+.
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~~ 785 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAEE 785 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 77532 2221 11 13446664 234557888887777776666553
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-12 Score=134.95 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=137.3
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW 282 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~ 282 (489)
....+++|...+.+++.+.+... .....+|||+|++||||..+||+|.+.. +.||+.|||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 45789999999999999887552 2345789999999999999999999987 5799999997664321
Q ss_pred -----ccc----hHH---HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------Cc
Q 011305 283 -----RGD----SEK---LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG--------LT 342 (489)
Q Consensus 283 -----~g~----~~~---~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg--------~~ 342 (489)
.|. ... .-...|+.|.. +.||||||..+... ++..||..++. ..
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~G---GTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~~~rvG~~~ 271 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANG---GTLFLDEIGEMPLE-------------LQVKLLRVLQEREFERVGGNK 271 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCC---ceEEeeccccCCHH-------------HHHHHHHHHHcCeeEecCCCc
Confidence 111 111 11123444444 89999999888654 44455555542 12
Q ss_pred cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHH----HhcCC
Q 011305 343 QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVE----RTEGY 411 (489)
Q Consensus 343 ~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~----~t~G~ 411 (489)
...-.|-||++||..- .+-+.|.-|+ .++.+..|...+|.+=+-.++... +...++ ...++
T Consensus 272 ~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDIp~L~~hf-------l~~~~~~~~~~~~~~ 343 (464)
T COG2204 272 PIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDIPLLAEHF-------LKRFAAELGRPPKGF 343 (464)
T ss_pred ccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhHHHHHHHH-------HHHHHHHcCCCCCCC
Confidence 2233578999998841 1334444477 557788888888775333322111 122222 24578
Q ss_pred cHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCC
Q 011305 412 SGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPD 444 (489)
Q Consensus 412 sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~ 444 (489)
++..+..+....|.+++|.+.+.++.....++.
T Consensus 344 s~~a~~~L~~y~WPGNVREL~N~ver~~il~~~ 376 (464)
T COG2204 344 SPEALAALLAYDWPGNVRELENVVERAVILSEG 376 (464)
T ss_pred CHHHHHHHHhCCCChHHHHHHHHHHHHHhcCCc
Confidence 899999999999999999998888776554433
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.3e-10 Score=118.21 Aligned_cols=179 Identities=15% Similarity=0.185 Sum_probs=118.7
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------- 269 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------------- 269 (489)
.|++|+|++.+++.+...+... .-++.+||+||+|+||+++|.++|+.+-..
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 4889999999999999988552 234789999999999999999999987321
Q ss_pred -EEEEeccchh-hh--------hcc-------c-hHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHH
Q 011305 270 -FFNISASSVV-SK--------WRG-------D-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEAS 327 (489)
Q Consensus 270 -~i~v~~s~l~-~~--------~~g-------~-~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 327 (489)
++.+...... ++ ..| . .-..++.+...+. .....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 1222211000 00 000 0 0123444444333 23457999999998843
Q ss_pred HHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Q 011305 328 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVER 407 (489)
Q Consensus 328 ~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~ 407 (489)
...+.||+.++... . .++|..|++++.+-+.++||+ ..+.|+.|+.++..++|+....... .+.+...++..
T Consensus 139 -~aaNaLLK~LEEPp---~-~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~~~~~--~~~~~~~l~~~ 210 (314)
T PRK07399 139 -AAANALLKTLEEPG---N-GTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLGDEEI--LNINFPELLAL 210 (314)
T ss_pred -HHHHHHHHHHhCCC---C-CeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhhcccc--chhHHHHHHHH
Confidence 24578999997432 2 345667788999999999999 6699999999999999887643211 11224566666
Q ss_pred hcCCcHHHH
Q 011305 408 TEGYSGSDI 416 (489)
Q Consensus 408 t~G~sg~Di 416 (489)
..|-.+.-+
T Consensus 211 a~Gs~~~al 219 (314)
T PRK07399 211 AQGSPGAAI 219 (314)
T ss_pred cCCCHHHHH
Confidence 665444333
|
|
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=125.39 Aligned_cols=195 Identities=21% Similarity=0.203 Sum_probs=120.9
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc----
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR---- 283 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~---- 283 (489)
|+|.....+.+.+.+.... ....+|||+|++||||+++|++|.... +.||+.|+|..+.....
T Consensus 1 liG~S~~m~~~~~~~~~~a----------~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----------PLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777777776665532 234689999999999999999998866 47999999987643211
Q ss_pred -cchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCc
Q 011305 284 -GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 347 (489)
Q Consensus 284 -g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~ 347 (489)
|... ......+..| ..++|||||++.|... ++..|+..++.-. .....
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASLL-------------VQEKLLRVIEYGEFERVGGSQTLQVD 134 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEEecCCCceeccc
Confidence 1000 0011123333 3489999999998654 4455666664321 11234
Q ss_pred EEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh-cCCcHHH
Q 011305 348 VFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT-EGYSGSD 415 (489)
Q Consensus 348 viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t-~G~sg~D 415 (489)
+.+|++|+.. ..+.+.|..|+. .+.+..|...+|.+ ++.+++..... ...... .++++..
T Consensus 135 ~RiI~at~~~l~~~~~~g~fr~dL~~rl~-~~~i~lPpLReR~eDI~~L~~~fl~~~~~-------~~~~~~~~~ls~~a 206 (329)
T TIGR02974 135 VRLVCATNADLPALAAEGRFRADLLDRLA-FDVITLPPLRERQEDIMLLAEHFAIRMAR-------ELGLPLFPGFTPQA 206 (329)
T ss_pred eEEEEechhhHHHHhhcCchHHHHHHHhc-chhcCCCchhhhhhhHHHHHHHHHHHHHH-------HhCCCCCCCcCHHH
Confidence 6778888654 235567777884 35566666666654 33343322100 000111 4678888
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 416 IRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 416 i~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
+..|.+..|.++++.+.+.++..-
T Consensus 207 ~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 207 REQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHH
Confidence 888888888888888877766543
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.6e-11 Score=135.73 Aligned_cols=205 Identities=21% Similarity=0.257 Sum_probs=132.9
Q ss_pred CccccCcHHHHHHHHHHHHccc---cCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh
Q 011305 208 WESIKGLENAKRLLKEAVVMPI---KYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l---~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~ 281 (489)
.+.|+|++.+++.+...+.... ..| ..|...+||+||+|||||++|+++|+.+ +.+++.++++++...
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~------~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~ 640 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDP------NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK 640 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCC------CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh
Confidence 4568999999999998886532 111 1222468999999999999999999987 567999999876432
Q ss_pred h-----ccchHH-----HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--c------c
Q 011305 282 W-----RGDSEK-----LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--T------Q 343 (489)
Q Consensus 282 ~-----~g~~~~-----~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~--~------~ 343 (489)
. .|.... .-..+....+....+||+|||++.+.+. +++.|++.++.- . .
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCceecCCceEE
Confidence 1 111000 0011222333444589999999877433 556677777532 1 1
Q ss_pred CCCcEEEEEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-----
Q 011305 344 SDELVFVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----- 393 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~----- 393 (489)
.-.+.+||+|||... .+.|+++.|++..+.|.+++.++...|++.++...
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~ 787 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLE 787 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 123466888998631 14578999999999999999999999988877542
Q ss_pred --CCCCCCC---HHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHH
Q 011305 394 --TGEESLP---YDLLVERT--EGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 394 --~~~~~~d---l~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
+....++ ++.|++.. ..|-.+.|+.+++.-....+.+.
T Consensus 788 ~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~~ 832 (857)
T PRK10865 788 ERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQ 832 (857)
T ss_pred hCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHHH
Confidence 2222222 33344321 12346788888877776666543
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=124.65 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=95.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh--hccchHH----------HHHHHHHHHHhcCCcEEEEch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSEK----------LIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~--~~g~~~~----------~l~~lf~~A~~~~p~VL~IDE 309 (489)
.+++||.||||||||++++.+|+.++.+++.|++...... ..|...- .....+..|.. .+.+|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~-~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ-HNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh-CCeEEEech
Confidence 4789999999999999999999999999999988654433 3332111 11122333333 347899999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHH-----hcC---CccCCCcEEEEEEeCCCC------------cccHHHHhhcc
Q 011305 310 IDAIISQRGEARSEHEASRRLKTELLIQ-----MDG---LTQSDELVFVLAATNLPW------------ELDAAMLRRLE 369 (489)
Q Consensus 310 iD~l~~~r~~~~~~~~~~~~i~~~LL~~-----ldg---~~~~~~~viVIatTn~p~------------~Ld~al~rRf~ 369 (489)
+|...++.. ..++.+|.. +.+ .......+.||+|.|... .++.++++||.
T Consensus 143 in~a~p~~~----------~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~ 212 (327)
T TIGR01650 143 YDAGRPDVM----------FVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWS 212 (327)
T ss_pred hhccCHHHH----------HHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhhee
Confidence 998755421 122233331 111 011233577899998753 27899999998
Q ss_pred cccccCCCCHHHHHHHHHHhcCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
..+.+..|+.++-.+|+......
T Consensus 213 i~~~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 213 IVTTLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eEeeCCCCCHHHHHHHHHhhccC
Confidence 78899999999999999876543
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=124.77 Aligned_cols=127 Identities=23% Similarity=0.242 Sum_probs=80.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc----hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS----VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~----l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
..+|||+||||||||++|+++|..++.+++.++... +.+ +..........-+..|. ..+++|+|||++.+.+..
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~-~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAF-KKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHh-hcCCEEEEeCcCcCCHHH
Confidence 468999999999999999999999999999998531 111 11111111111122222 235899999999875442
Q ss_pred cccchhhHHHHHHHHHHH-----HHhcCCccCCCcEEEEEEeCCC-----------CcccHHHHhhcccccccCCCCHHH
Q 011305 318 GEARSEHEASRRLKTELL-----IQMDGLTQSDELVFVLAATNLP-----------WELDAAMLRRLEKRILVPLPDTEA 381 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL-----~~ldg~~~~~~~viVIatTn~p-----------~~Ld~al~rRf~~~i~~~~Pd~~e 381 (489)
.. .++.++ ...++.......+.+|+|+|.+ ..+++++++|| ..+.+..|+..|
T Consensus 197 q~----------~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 197 LI----------IINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred HH----------HHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHH
Confidence 11 111121 1222222233457889999974 45899999999 569999998433
|
|
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.1e-11 Score=114.09 Aligned_cols=169 Identities=18% Similarity=0.181 Sum_probs=105.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
..++|+||+|+|||+|++++++..+.. +++..++.... +..... .+|+|||++.+...
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~~~~-----------~~~~~~---~~l~iDDi~~~~~~------ 102 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIGSDA-----------ANAAAE---GPVLIEDIDAGGFD------ 102 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcchHH-----------HHhhhc---CeEEEECCCCCCCC------
Confidence 459999999999999999999887654 34433322211 111111 58999999976311
Q ss_pred hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCC
Q 011305 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEE 397 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~ 397 (489)
..+|++.++.....+ ..+|++++..|.. ..+.+++||. ..+.+..|+.++|..+++..+.......
T Consensus 103 --------~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l 173 (226)
T PRK09087 103 --------ETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYV 173 (226)
T ss_pred --------HHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 122444443333333 3456655555543 3688999995 7788999999999999999998766554
Q ss_pred CCC-HHHHHHHhcCCcHHHHHHHHH---HHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 398 SLP-YDLLVERTEGYSGSDIRLVSK---EAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 398 ~~d-l~~La~~t~G~sg~Di~~l~~---~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+.+ ++.|++... ++++.+.. .....+.. ..++||...++++++.+
T Consensus 174 ~~ev~~~La~~~~----r~~~~l~~~l~~L~~~~~~-------------------~~~~it~~~~~~~l~~~ 222 (226)
T PRK09087 174 DPHVVYYLVSRME----RSLFAAQTIVDRLDRLALE-------------------RKSRITRALAAEVLNEM 222 (226)
T ss_pred CHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHH-------------------hCCCCCHHHHHHHHHhh
Confidence 433 566676665 34443332 22211111 11358999999988765
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.7e-12 Score=121.82 Aligned_cols=45 Identities=47% Similarity=0.660 Sum_probs=37.1
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
|++|+|++.+|+.|.-+..- ++|+||+||||||||++|+.+..-+
T Consensus 2 f~dI~GQe~aKrAL~iAAaG--------------~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 2 FSDIVGQEEAKRALEIAAAG--------------GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp TCCSSSTHHHHHHHHHHHHC--------------C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred hhhhcCcHHHHHHHHHHHcC--------------CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 78999999999999865532 4799999999999999999999865
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.1e-10 Score=121.42 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=95.7
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEecc-chhhhhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS-SVVSKWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~--~~i~v~~s-~l~~~~~g~ 285 (489)
+.|+|.+++++.+...+. ...++||.||||||||++|++++..++. +|..+.+. .......|.
T Consensus 20 ~~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~ 85 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 85 (498)
T ss_pred hhccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCc
Confidence 368899999888886552 2478999999999999999999998743 44444432 111222221
Q ss_pred h-HHHH--HHHHHHHHhc---CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------cCCCcEEEEE
Q 011305 286 S-EKLI--KVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------QSDELVFVLA 352 (489)
Q Consensus 286 ~-~~~l--~~lf~~A~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------~~~~~viVIa 352 (489)
. -... ..-|...... ...+||+|||..+.+ .+++.|+..|+.-. ..-+..++++
T Consensus 86 l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp-------------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ 152 (498)
T PRK13531 86 LSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERRFRNGAHEEKIPMRLLVT 152 (498)
T ss_pred HHHhhhhhcCchhhhcCCccccccEEeecccccCCH-------------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEE
Confidence 1 0000 1112211111 225999999976643 36677888884221 1112345556
Q ss_pred EeCCCCc---ccHHHHhhcccccccCCCC-HHHHHHHHHHh
Q 011305 353 ATNLPWE---LDAAMLRRLEKRILVPLPD-TEARRAMFESL 389 (489)
Q Consensus 353 tTn~p~~---Ld~al~rRf~~~i~~~~Pd-~~eR~~IL~~~ 389 (489)
|||.... ..+++..||...+.+|+|+ .++..+++...
T Consensus 153 ATN~LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 153 ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred ECCCCcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 6675332 3468999998899999997 46667788764
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-11 Score=133.79 Aligned_cols=179 Identities=25% Similarity=0.384 Sum_probs=134.0
Q ss_pred hhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh--------
Q 011305 195 LCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------- 266 (489)
Q Consensus 195 ~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------- 266 (489)
..+.+......-.++.++|.++.++++.+.+... ..++-+|.|+||+|||.++..+|...
T Consensus 156 y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR------------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~ 223 (786)
T COG0542 156 YTRDLTELAREGKLDPVIGRDEEIRRTIQILSRR------------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPES 223 (786)
T ss_pred HhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhcc------------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHH
Confidence 3444555556778999999999999988877542 23678999999999999999999977
Q ss_pred --CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 267 --KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 267 --~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
+..++.++.+.+. .+|.|+.+..++.+.+......+.||||||++.+.+.....+...+..+ ++.-.|
T Consensus 224 L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaN-iLKPaL------- 295 (786)
T COG0542 224 LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAAN-LLKPAL------- 295 (786)
T ss_pred HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhh-hhHHHH-------
Confidence 5778889888876 4799999999999999999888899999999999887543221122222 222222
Q ss_pred cCCCcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC
Q 011305 343 QSDELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 395 (489)
Q Consensus 343 ~~~~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~ 395 (489)
.++. +-+|++|...+ .-|+||-||| ..|.+..|+.++-..||+..-..+..
T Consensus 296 ARGe-L~~IGATT~~EYRk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~ 351 (786)
T COG0542 296 ARGE-LRCIGATTLDEYRKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEA 351 (786)
T ss_pred hcCC-eEEEEeccHHHHHHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHH
Confidence 2333 44566664332 3689999999 55999999999999999987654443
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=118.94 Aligned_cols=149 Identities=14% Similarity=0.142 Sum_probs=105.6
Q ss_pred CCccccC-cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------
Q 011305 207 KWESIKG-LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------- 269 (489)
Q Consensus 207 ~~~dliG-~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------------- 269 (489)
.|+.|+| ++.+++.++..+.. ...++.+||+||+|+||+++|+++|+.+..+
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~-----------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAK-----------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHc-----------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4889999 89999999988743 2345678999999999999999999987321
Q ss_pred --------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 270 --------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 270 --------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
+..+... +.. -.-..++.+.+... .....|++|||+|.+.. ...+.|++.
T Consensus 72 ~~~~~hpD~~~i~~~---~~~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~ 133 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQS--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKF 133 (329)
T ss_pred HhcCCCCCEEEeccc---ccc--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHH
Confidence 2222111 010 11223444443332 22346999999998843 356789999
Q ss_pred hcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 338 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 338 ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
++. .++.+++|.+|+.+..+.++++||+ ..++|+.|+.++...+++.
T Consensus 134 LEE---Pp~~~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 134 LEE---PSGGTTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred hcC---CCCCceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 873 3445666778888899999999999 6699999999888777764
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.7e-11 Score=110.64 Aligned_cols=127 Identities=17% Similarity=0.212 Sum_probs=89.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeccchhhhhccchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~------------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~ 296 (489)
.++.+||+||+|+|||++|+.+++.+... +..+.... . ......++.+.+.
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~--~~~~~~i~~i~~~ 87 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---Q--SIKVDQVRELVEF 87 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---C--cCCHHHHHHHHHH
Confidence 34679999999999999999999987432 22222110 0 0112344444544
Q ss_pred HHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 297 ARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 297 A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
+.. ....|++|||+|.+... .++.|+..++.. +....+|.+|+.+..+.+++++|+ ..+
T Consensus 88 ~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i~sr~-~~~ 150 (188)
T TIGR00678 88 LSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEP---PPNTLFILITPSPEKLLPTIRSRC-QVL 150 (188)
T ss_pred HccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCC---CCCeEEEEEECChHhChHHHHhhc-EEe
Confidence 433 33569999999988532 346688888743 234556667778889999999999 579
Q ss_pred ccCCCCHHHHHHHHHHh
Q 011305 373 LVPLPDTEARRAMFESL 389 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~ 389 (489)
.++.|+.++..++++..
T Consensus 151 ~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 151 PFPPLSEEALLQWLIRQ 167 (188)
T ss_pred eCCCCCHHHHHHHHHHc
Confidence 99999999999988876
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.2e-11 Score=130.62 Aligned_cols=216 Identities=26% Similarity=0.277 Sum_probs=133.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+..++++++|.+...+++.+.+.... ....+|||+|++||||+++|++|+... +.||+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVA----------RSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 344678999999999998888776532 234689999999999999999999986 5799999998764
Q ss_pred hhhc-----cchHH-------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c--
Q 011305 280 SKWR-----GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q-- 343 (489)
Q Consensus 280 ~~~~-----g~~~~-------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~-- 343 (489)
.... |.... .....+..+ ..++|||||++.|... ++..|+..++.-. .
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a---~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~~~~ 323 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELA---DGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFERVG 323 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCccccc---CCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEEECC
Confidence 3211 10000 000112222 3489999999998654 4455666665321 0
Q ss_pred ----CCCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHH----HHHHHHhcCCCCCCCCCCHHHHHHHh
Q 011305 344 ----SDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERT 408 (489)
Q Consensus 344 ----~~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR----~~IL~~~l~~~~~~~~~dl~~La~~t 408 (489)
....+.+|++|+.. ..+.+.+..|+. .+.+..|...+| ..|+.+++...... ....
T Consensus 324 ~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~-~~~i~lPpLreR~eDi~~L~~~~l~~~~~~-------~~~~- 394 (534)
T TIGR01817 324 GNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYYRIN-VVPIFLPPLRERREDIPLLAEAFLEKFNRE-------NGRP- 394 (534)
T ss_pred CCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHHHhc-CCeeeCCCcccccccHHHHHHHHHHHHHHH-------cCCC-
Confidence 11236677777654 124556666773 344555555444 34555554322110 0011
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHH
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 459 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~ 459 (489)
.+++...+..|.+..|.++++.+.+.++..-...+. ..|+.+|+.
T Consensus 395 ~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~~~~------~~I~~~~l~ 439 (534)
T TIGR01817 395 LTITPSAIRVLMSCKWPGNVRELENCLERTATLSRS------GTITRSDFS 439 (534)
T ss_pred CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHHCc
Confidence 357777888888888888888887777655432222 236666664
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.6e-11 Score=120.05 Aligned_cols=193 Identities=22% Similarity=0.238 Sum_probs=123.8
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh---
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~--- 281 (489)
+++++|.+...+.+.+.+.... ....+|||+|++||||+++|+++.... +.||+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a----------~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 6789999988888888776643 234689999999999999999998766 479999999876321
Q ss_pred --hccchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cC
Q 011305 282 --WRGDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QS 344 (489)
Q Consensus 282 --~~g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~ 344 (489)
..|... ......+..+ ..++|||||+|.|... ++..|+..++.-. ..
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~a---~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~~~~ 138 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGSQPL 138 (326)
T ss_pred HHHccccccccCCcccccCCchhcc---CCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 111100 0001123332 3489999999998654 4455666664321 11
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH-----h
Q 011305 345 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER-----T 408 (489)
Q Consensus 345 ~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~-----t 408 (489)
...+.||++|+.. ..+.+.+..||. .+.+..|+..+|.+ ++.+++.. ++.. .
T Consensus 139 ~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~-~~~i~lPpLReR~eDI~~L~~~fl~~-----------~~~~~~~~~~ 206 (326)
T PRK11608 139 QVNVRLVCATNADLPAMVAEGKFRADLLDRLA-FDVVQLPPLRERQSDIMLMAEHFAIQ-----------MCRELGLPLF 206 (326)
T ss_pred eccEEEEEeCchhHHHHHHcCCchHHHHHhcC-CCEEECCChhhhhhhHHHHHHHHHHH-----------HHHHhCCCCC
Confidence 1246677777654 235677788883 35566666666654 44444322 1111 1
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
.++++..+..|.+..|.++++.+.+.++..
T Consensus 207 ~~~s~~al~~L~~y~WPGNvrEL~~vl~~a 236 (326)
T PRK11608 207 PGFTERARETLLNYRWPGNIRELKNVVERS 236 (326)
T ss_pred CCCCHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 367777778888888888888777766654
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.4e-10 Score=112.88 Aligned_cols=131 Identities=22% Similarity=0.178 Sum_probs=84.8
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC------------CCcccHHHHhhcc
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL------------PWELDAAMLRRLE 369 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~------------p~~Ld~al~rRf~ 369 (489)
|+||||||++.|.-. .++-|-..|+ ..-.++ ||.+||+ |..++..+++|.
T Consensus 292 pGVLFIDEvHmLDIE-------------~FsFlnrAlE---se~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl- 353 (450)
T COG1224 292 PGVLFIDEVHMLDIE-------------CFSFLNRALE---SELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL- 353 (450)
T ss_pred cceEEEechhhhhHH-------------HHHHHHHHhh---cccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-
Confidence 678888888877322 2223333333 222334 5567764 456899999999
Q ss_pred cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 448 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~ 448 (489)
.+|...+++.++.++|++..+.......+. .++.|+.....-|-+.--+|+.-|...|-+| +.
T Consensus 354 lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~r------g~---------- 417 (450)
T COG1224 354 LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRR------GS---------- 417 (450)
T ss_pred eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHh------CC----------
Confidence 778888999999999999999887776544 3666666555445555445555454444332 11
Q ss_pred CCCCCCHHHHHHHHhhhCCC
Q 011305 449 QIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 449 ~~~~It~eDf~~AL~~~~ps 468 (489)
..|..+|++.|-.-+-.+
T Consensus 418 --~~V~~~dVe~a~~lF~D~ 435 (450)
T COG1224 418 --KRVEVEDVERAKELFLDV 435 (450)
T ss_pred --CeeehhHHHHHHHHHhhH
Confidence 238899999987755443
|
|
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.2e-11 Score=130.54 Aligned_cols=159 Identities=26% Similarity=0.344 Sum_probs=102.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH-----------hCCcEEEEe
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-----------CKTTFFNIS 274 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e-----------l~~~~i~v~ 274 (489)
..|++++|.+...+.+++.+...- ....+|||+|++||||+++|+++.+. .+.||+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A----------~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYA----------RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 468899999999999888876532 23468999999999999999999987 367999999
Q ss_pred ccchhhhh-----ccchH--------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 275 ASSVVSKW-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 275 ~s~l~~~~-----~g~~~--------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
|..+.... .|..+ ..-..+|+.|. .++||||||+.|... ++..|+..++.-
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~ 349 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAH---GGTLFLDEIGEMPLP-------------LQTRLLRVLEEK 349 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccC---CCEEEEcChHhCCHH-------------HHHHHHhhhhcC
Confidence 98764321 11100 00112444443 379999999998654 445566666432
Q ss_pred c--------cCCCcEEEEEEeCCCC-c------ccHHHHhhcccccccCCCCHHHHHH----HHHHhcC
Q 011305 342 T--------QSDELVFVLAATNLPW-E------LDAAMLRRLEKRILVPLPDTEARRA----MFESLLP 391 (489)
Q Consensus 342 ~--------~~~~~viVIatTn~p~-~------Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~ 391 (489)
. ...-.+-+|++|+..- . +.+.+.-|+ ..+.+..|...+|.+ ++++++.
T Consensus 350 ~~~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~ 417 (538)
T PRK15424 350 EVTRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLK 417 (538)
T ss_pred eEEecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHH
Confidence 1 1122356788887642 1 233444465 336667777766654 4444543
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=6.5e-11 Score=121.44 Aligned_cols=154 Identities=27% Similarity=0.345 Sum_probs=100.9
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh--hccchH
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK--WRGDSE 287 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~--~~g~~~ 287 (489)
.++|.++++..+...+. ...++||.||||||||++|+++|+.++.+|+.+.|...... ..|...
T Consensus 25 ~~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 47777777777665442 24789999999999999999999999999999998743321 122211
Q ss_pred HHHH----HHHHHHHh--cCC--cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------cCCCcEEE
Q 011305 288 KLIK----VLFELARH--HAP--STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------QSDELVFV 350 (489)
Q Consensus 288 ~~l~----~lf~~A~~--~~p--~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------~~~~~viV 350 (489)
-... ..+..... ... +|+++|||+...+. +++.|+..|+... .-....+|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~~~~~~~f~v 157 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTTIRLPPPFIV 157 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCCcCCCCCCEE
Confidence 1110 00000000 000 39999999877543 5677777776411 12245777
Q ss_pred EEEeC-----CCCcccHHHHhhcccccccCCC-CHHHHHHHHHHhc
Q 011305 351 LAATN-----LPWELDAAMLRRLEKRILVPLP-DTEARRAMFESLL 390 (489)
Q Consensus 351 IatTn-----~p~~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~~l 390 (489)
|+|+| ....+++++++||...++++.| +..+...++....
T Consensus 158 iaT~Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 158 IATQNPGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred EEccCccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 88878 3345899999999988999999 5555555555444
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.7e-11 Score=127.15 Aligned_cols=217 Identities=21% Similarity=0.244 Sum_probs=132.1
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~ 281 (489)
..+|++++|.+...+.+.+.+...- ....+|||+|++||||+++|+++.+.. +.||+.++|..+...
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A----------~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~ 277 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYA----------RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAES 277 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChh
Confidence 3568999999999999888776532 234689999999999999999999865 679999999876432
Q ss_pred h-----ccchH--------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 282 W-----RGDSE--------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 282 ~-----~g~~~--------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
. .|..+ .....+|+.|. .+.|||||++.|... ++..|+..++.-.
T Consensus 278 lleseLFG~~~gaftga~~~~~~Gl~e~A~---gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~r~g~ 341 (526)
T TIGR02329 278 LLEAELFGYEEGAFTGARRGGRTGLIEAAH---RGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVVRVGG 341 (526)
T ss_pred HHHHHhcCCcccccccccccccccchhhcC---CceEEecChHhCCHH-------------HHHHHHHHHhcCcEEecCC
Confidence 1 11100 01122344443 379999999998654 4455666664321
Q ss_pred --cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
...-.+-+|++|+..- .+.+.+..|+. .+.+..|+..+|.+ ++.+++....... -.
T Consensus 342 ~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~rL~-~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~----------~~ 410 (526)
T TIGR02329 342 TEPVPVDVRVVAATHCALTTAVQQGRFRRDLFYRLS-ILRIALPPLRERPGDILPLAAEYLVQAAAAL----------RL 410 (526)
T ss_pred CceeeecceEEeccCCCHHHHhhhcchhHHHHHhcC-CcEEeCCCchhchhHHHHHHHHHHHHHHHHc----------CC
Confidence 1112346777876642 13334444652 35666676666654 4444443321110 11
Q ss_pred CCcHHHHHH-------HHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHH
Q 011305 410 GYSGSDIRL-------VSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIA 461 (489)
Q Consensus 410 G~sg~Di~~-------l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~A 461 (489)
++++..+.. |.+..|.++++.+.+.++..-....... ...|+.+|+...
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~---~~~I~~~~l~~~ 466 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMP---AGALTPDVLRAL 466 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCC---CCccCHHHhhhh
Confidence 355555555 8888888888888777766543221100 123777776543
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=126.69 Aligned_cols=202 Identities=21% Similarity=0.243 Sum_probs=121.6
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.....|++++|.+...+++.+.+...- .....|||+|++||||+++|+++.... +.||+.++|+.+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~A----------~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKLA----------MLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHHh----------CCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456789999999988887777665422 223579999999999999999998765 4799999998764
Q ss_pred hhhc-----cchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c--
Q 011305 280 SKWR-----GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q-- 343 (489)
Q Consensus 280 ~~~~-----g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~-- 343 (489)
.... |... .....+|+.|. .++|||||+|.+.+. ++..|+..++.-. .
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~---~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g 331 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQAN---GGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVG 331 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcC---CCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcccCC
Confidence 3211 1100 00112344333 389999999998654 3445666554321 1
Q ss_pred ----CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHh
Q 011305 344 ----SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERT 408 (489)
Q Consensus 344 ----~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t 408 (489)
....+.||++|+.+- .+.+.+..|+.. +.+..|...+|.+ ++..++........ ...
T Consensus 332 ~~~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g-------~~~ 403 (520)
T PRK10820 332 EDHEVHVDVRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQG-------VPR 403 (520)
T ss_pred CCcceeeeeEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcC-------CCC
Confidence 112356787776642 245667778743 6666776666653 33333322110000 001
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
.+++..-+..|.+..|.++++.+.+.++..
T Consensus 404 ~~ls~~a~~~L~~y~WPGNvreL~nvl~~a 433 (520)
T PRK10820 404 PKLAADLNTVLTRYGWPGNVRQLKNAIYRA 433 (520)
T ss_pred CCcCHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 245666666666666666666666555543
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.6e-12 Score=113.20 Aligned_cols=110 Identities=29% Similarity=0.343 Sum_probs=69.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh------hhhcc---chHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV------SKWRG---DSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~------~~~~g---~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
+|||+||||||||++|+.+|+.++.+++.++++... +.+.- .....-..+....+ .+++++|||++...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~--~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR--KGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH--EEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccccccccccccccc--ceeEEEECCcccCC
Confidence 589999999999999999999999999999886532 11110 00000000000111 45899999998764
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCcc----------CCC------cEEEEEEeCCCC----cccHHHHhhc
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQ----------SDE------LVFVLAATNLPW----ELDAAMLRRL 368 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~----------~~~------~viVIatTn~p~----~Ld~al~rRf 368 (489)
+. ++..|+..++.-.. ... .+.+|+|+|... .+++++++||
T Consensus 79 ~~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 79 PE-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp HH-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred HH-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 32 45556666653211 111 388999999988 7999999998
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=117.91 Aligned_cols=131 Identities=19% Similarity=0.272 Sum_probs=93.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------cEEEEeccchhhhhccchHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT------------------------TFFNISASSVVSKWRGDSEKLIKVLFE 295 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~------------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~ 295 (489)
..++.+||+||+|+|||++|+++|+.+.. .++.+...+- ++ .-.-..++.+.+
T Consensus 20 r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~~ 96 (328)
T PRK05707 20 RHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELVS 96 (328)
T ss_pred CcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHHH
Confidence 34578999999999999999999998843 1233322110 00 011234444444
Q ss_pred HHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccc
Q 011305 296 LAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKR 371 (489)
Q Consensus 296 ~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~ 371 (489)
.+. .....|++||++|.+.. ...+.||+.++. .+..+++|.+|++++.+.+.++||+. .
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~-~ 159 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQ-Q 159 (328)
T ss_pred HHhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhce-e
Confidence 333 33457999999999853 356889999873 33557788899999999999999994 4
Q ss_pred cccCCCCHHHHHHHHHHhc
Q 011305 372 ILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 372 i~~~~Pd~~eR~~IL~~~l 390 (489)
+.|+.|+.++-.+.+....
T Consensus 160 ~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 160 QACPLPSNEESLQWLQQAL 178 (328)
T ss_pred eeCCCcCHHHHHHHHHHhc
Confidence 9999999999888887654
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.5e-10 Score=128.81 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=120.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~ 280 (489)
+..+|++++|.+...+.+.+.+.... ....+|||+|++||||+++|+++.+.. +.||+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~~~a----------~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGRQAA----------KSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHHHHh----------CcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 34579999999988888877765533 233679999999999999999999876 47999999987632
Q ss_pred h-----hccch----HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--cC-----
Q 011305 281 K-----WRGDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--QS----- 344 (489)
Q Consensus 281 ~-----~~g~~----~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~~----- 344 (489)
. ..|.. .......|+.| ..++||||||+.+... ++..|+..++.-. ..
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~a---~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~~~ 453 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFELA---HGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVITRLDSRRL 453 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeEC---CCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 1 11111 00000112222 3489999999998654 4455666654221 00
Q ss_pred -CCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH---hc
Q 011305 345 -DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER---TE 409 (489)
Q Consensus 345 -~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~---t~ 409 (489)
.-.+.||+||+..- .+.+.+.-|+ ..+.+..|...+|.+ ++..++... +.. ..
T Consensus 454 ~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~-----------~~~~~~~~ 521 (638)
T PRK11388 454 IPVDVRVIATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSL-----------EKRFSTRL 521 (638)
T ss_pred EEeeEEEEEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHH-----------HHHhCCCC
Confidence 11466788887642 2344455566 346677777777753 344443221 111 12
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
+++...+..|.+..|.++++.+.+.++..
T Consensus 522 ~~s~~a~~~L~~y~WPGNvreL~~~l~~~ 550 (638)
T PRK11388 522 KIDDDALARLVSYRWPGNDFELRSVIENL 550 (638)
T ss_pred CcCHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 45666666666666666666666655543
|
|
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.2e-10 Score=113.11 Aligned_cols=155 Identities=27% Similarity=0.351 Sum_probs=96.6
Q ss_pred cEEEEchhhhHHhhhcccchhhHHHH-HHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhccc
Q 011305 303 STIFLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEK 370 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~~~~~~-~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~ 370 (489)
+|+||||||.++...+.+.. +.++ -++-.||-.++|..- ..+.+++|++. ..|+.|-|.|.-||+.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~--dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGP--DVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred CeEEEehhhHHHhcCCCCCC--CcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 59999999999987653221 3333 466778888877642 23568888775 6778899999999999
Q ss_pred ccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhHH-------HHHHHHHhhhhh
Q 011305 371 RILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQP-------LRRLMVLLEGRQ 439 (489)
Q Consensus 371 ~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~~a-------~rR~~~~le~~~ 439 (489)
.+++...+.++-..||..--.. .-..+..|. .|+| |+-..|..+..-|...+ +||+...++..-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~s----LikQY~aLl-kTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 330 RVELDALTKEDFERILTEPKAS----LIKQYKALL-KTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchH----HHHHHHHHH-hhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 9999999999988887531100 000011111 1222 56666666666655433 477777666543
Q ss_pred cc----CCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 440 EV----APDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 440 ~~----~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+- .|+-. .....|+.+-+.+.|..+
T Consensus 405 ediSFeA~d~~-g~~v~Id~~yV~~~l~~l 433 (444)
T COG1220 405 EDISFEAPDMS-GQKVTIDAEYVEEKLGDL 433 (444)
T ss_pred HHhCccCCcCC-CCeEEEcHHHHHHHHHHH
Confidence 32 22222 222358888888777544
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3e-11 Score=125.93 Aligned_cols=204 Identities=23% Similarity=0.244 Sum_probs=122.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS 280 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~ 280 (489)
+...+..|||...+..++.+.+...- ....+|||.|.+||||..+||+|.+.. +.||+.+||+.+..
T Consensus 218 ~~~~~~~iIG~S~am~~ll~~i~~VA----------~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPe 287 (550)
T COG3604 218 VVLEVGGIIGRSPAMRQLLKEIEVVA----------KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPE 287 (550)
T ss_pred hhcccccceecCHHHHHHHHHHHHHh----------cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccch
Confidence 35578899999999999988876632 344789999999999999999999987 68999999976643
Q ss_pred hh---------ccchHHHH---HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 281 KW---------RGDSEKLI---KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 281 ~~---------~g~~~~~l---~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
.. .|.....+ +.-|+.|. .+.||+|||..|...-|.+ ..+.+++.-++.+.+-....-.|
T Consensus 288 sLlESELFGHeKGAFTGA~~~r~GrFElAd---GGTLFLDEIGelPL~lQaK-----LLRvLQegEieRvG~~r~ikVDV 359 (550)
T COG3604 288 SLLESELFGHEKGAFTGAINTRRGRFELAD---GGTLFLDEIGELPLALQAK-----LLRVLQEGEIERVGGDRTIKVDV 359 (550)
T ss_pred HHHHHHHhcccccccccchhccCcceeecC---CCeEechhhccCCHHHHHH-----HHHHHhhcceeecCCCceeEEEE
Confidence 21 12111111 12233333 3799999998887653322 11223333233232222222348
Q ss_pred EEEEEeCCCCcccHHHHh-hcc-------cccccCCCCHHHHHH----HHHHhc----CCCCC-CCCCC---HHHHHHHh
Q 011305 349 FVLAATNLPWELDAAMLR-RLE-------KRILVPLPDTEARRA----MFESLL----PSQTG-EESLP---YDLLVERT 408 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~r-Rf~-------~~i~~~~Pd~~eR~~----IL~~~l----~~~~~-~~~~d---l~~La~~t 408 (489)
-||++||+ .|..+++. +|. ..+.+..|...+|.. +.++++ ...+. ....+ ++.|.+..
T Consensus 360 RiIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~ 437 (550)
T COG3604 360 RVIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE 437 (550)
T ss_pred EEEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC
Confidence 89999998 55555554 332 234455576666653 222222 22232 12222 33333333
Q ss_pred cCCcHHHHHHHHHHHHhHH
Q 011305 409 EGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a 427 (489)
---+.+++++++.+|+..+
T Consensus 438 wPGNVRELen~veRavlla 456 (550)
T COG3604 438 WPGNVRELENVVERAVLLA 456 (550)
T ss_pred CCCcHHHHHHHHHHHHHHh
Confidence 3335688888888888755
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.8e-10 Score=122.42 Aligned_cols=197 Identities=22% Similarity=0.237 Sum_probs=118.3
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh-
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW- 282 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~- 282 (489)
...+++|.....+.+.+.+...- ....+|||+|++||||+++|+++.... +.||+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a----------~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVA----------ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999999888876632 334789999999999999999999976 5799999998764321
Q ss_pred ----ccchHH-------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------c
Q 011305 283 ----RGDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 343 (489)
Q Consensus 283 ----~g~~~~-------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~ 343 (489)
.|.... .....|..| ..++|||||+|.|... ++..|+..++.-. .
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~ 318 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSDRS 318 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCCcc
Confidence 111000 001123333 3489999999998654 3455666554221 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....+-||++|+..- .+.+.+..|+. .+.+..|+..+|.+ ++++++...... +.....+++
T Consensus 319 ~~~~~RiI~~t~~~l~~~~~~~~f~~dL~~rl~-~~~i~lPpLreR~eDI~~L~~~fl~~~~~~-------~~~~~~~~s 390 (509)
T PRK05022 319 LRVDVRVIAATNRDLREEVRAGRFRADLYHRLS-VFPLSVPPLRERGDDVLLLAGYFLEQNRAR-------LGLRSLRLS 390 (509)
T ss_pred eecceEEEEecCCCHHHHHHcCCccHHHHhccc-ccEeeCCCchhchhhHHHHHHHHHHHHHHH-------cCCCCCCCC
Confidence 122467888887642 25556666663 35566776666654 333333221100 000112455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 413 GSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 413 g~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
...+..|.+..|.++++.+.+.++.
T Consensus 391 ~~a~~~L~~y~WPGNvrEL~~~i~r 415 (509)
T PRK05022 391 PAAQAALLAYDWPGNVRELEHVISR 415 (509)
T ss_pred HHHHHHHHhCCCCCcHHHHHHHHHH
Confidence 5555555555555555555554443
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.2e-10 Score=101.35 Aligned_cols=128 Identities=30% Similarity=0.412 Sum_probs=81.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeccchhhh--------------hccchHHHHHHHHHHHHhcCCcE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSK--------------WRGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s~l~~~--------------~~g~~~~~l~~lf~~A~~~~p~V 304 (489)
+.+++|+||||||||++++.+|..+... ++.+++...... ...........++..+....+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4689999999999999999999999765 888887654322 11234456677888888877899
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCcccHHHHhhcccccccCCC
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-p~~Ld~al~rRf~~~i~~~~P 377 (489)
|+|||++.+............ ........ ........+|+++|. ....+..+..|++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~----~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLL----EELRLLLL----LKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhh----hhhHHHHH----HHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 999999998655321100000 00000011 112233567888885 334555566677777766554
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.1e-10 Score=128.71 Aligned_cols=197 Identities=22% Similarity=0.293 Sum_probs=117.9
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK 281 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~ 281 (489)
+..|++++|.+...+.+.+.+.... ....+|||+|++|||||++|+++.... +.||+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a----------~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVA----------QSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 3568899999999999888776532 234689999999999999999999866 579999999876322
Q ss_pred -----hccc--------hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 282 -----WRGD--------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 282 -----~~g~--------~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
..|. .... ...+..+. .++|||||++.+... ++..|+..++.-.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~-~g~le~a~---~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~~~g~ 504 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQR-IGRFELAD---KSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFERLGS 504 (686)
T ss_pred HhhhhhcCcccccccccccch-hhHHHhcC---CCeEEEechhhCCHH-------------HHHHHHHHHHhCCEEeCCC
Confidence 1111 1111 12233333 489999999998654 4455666654321
Q ss_pred --cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
.....+.+|++|+..- .+...+..|+ ..+.+..|+..+|.+ +++.++.+..... .+...
T Consensus 505 ~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~-------~~~~~ 576 (686)
T PRK15429 505 NKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIARRM-------GRNID 576 (686)
T ss_pred CCcccceEEEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc-------CCCCC
Confidence 1123467888887642 1334455565 335667777777765 3444432211100 00112
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
+++...+..|.+..|.++++.+.+.++
T Consensus 577 ~~s~~al~~L~~y~WPGNvrEL~~~i~ 603 (686)
T PRK15429 577 SIPAETLRTLSNMEWPGNVRELENVIE 603 (686)
T ss_pred CcCHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 345555555555555555555544443
|
|
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=99.17 E-value=9.6e-10 Score=121.20 Aligned_cols=53 Identities=36% Similarity=0.543 Sum_probs=45.1
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.|..-|++++|++++++.++..+.. .++++|+||||||||++++++++.++..
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~~--------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAKQ--------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHHc--------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 4556789999999999999887643 2589999999999999999999998644
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.8e-10 Score=105.69 Aligned_cols=121 Identities=26% Similarity=0.347 Sum_probs=77.5
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh-----
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----- 282 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----- 282 (489)
|+|.+...+.+.+.+..... .+.+|||+|++||||+++|++|.+.. +.||+.|+|+.+....
T Consensus 1 liG~s~~m~~~~~~~~~~a~----------~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS----------SDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT----------STS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHHhC----------CCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 57777778887777765433 33789999999999999999999976 5799999998764331
Q ss_pred ccch-------HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCc
Q 011305 283 RGDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDEL 347 (489)
Q Consensus 283 ~g~~-------~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~ 347 (489)
.|.. ......++..|.. ++||||||+.|.+. ++..|+..++.-. ...-.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~---GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 134 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANG---GTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSDKPVPVD 134 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTT---SEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSSSEEE--
T ss_pred hccccccccccccccCCceeeccc---eEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccccccccc
Confidence 1110 0111245555555 89999999999755 4556666665221 11235
Q ss_pred EEEEEEeCCC
Q 011305 348 VFVLAATNLP 357 (489)
Q Consensus 348 viVIatTn~p 357 (489)
+.||++|+.+
T Consensus 135 ~RiI~st~~~ 144 (168)
T PF00158_consen 135 VRIIASTSKD 144 (168)
T ss_dssp EEEEEEESS-
T ss_pred ceEEeecCcC
Confidence 7888888863
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=4e-10 Score=118.40 Aligned_cols=145 Identities=21% Similarity=0.276 Sum_probs=90.0
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------EEEEec----c
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT-------FFNISA----S 276 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~-------~i~v~~----s 276 (489)
++++++.+...+.+...+. ..++++|+||||||||++|+.+|..+... .+.++. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 5677777777777765543 24789999999999999999999988431 223322 1
Q ss_pred chhhhhc-cc-h----HHHHHHHHHHHHh--cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC--------
Q 011305 277 SVVSKWR-GD-S----EKLIKVLFELARH--HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG-------- 340 (489)
Q Consensus 277 ~l~~~~~-g~-~----~~~l~~lf~~A~~--~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg-------- 340 (489)
+++..+. +. . ......+...|.. ..|.+|+|||++.....+ +..+++..++.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~ 307 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWS 307 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccc
Confidence 2222221 10 0 1123334455554 357899999998764332 22333333331
Q ss_pred -----------CccCCCcEEEEEEeCCCC----cccHHHHhhcccccccCC-CCH
Q 011305 341 -----------LTQSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPL-PDT 379 (489)
Q Consensus 341 -----------~~~~~~~viVIatTn~p~----~Ld~al~rRf~~~i~~~~-Pd~ 379 (489)
.-..+.++.||+|+|..+ .+|.|++|||.. +.+.+ ++.
T Consensus 308 v~l~y~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p~~~~ 361 (459)
T PRK11331 308 VPLTYSENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEPGFDT 361 (459)
T ss_pred eeeeccccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecCCCCh
Confidence 112346799999999987 699999999954 55543 443
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-10 Score=108.70 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=76.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKT----TFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDA 312 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~----~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~ 312 (489)
|..++||.||+|||||.+|+++|+.+.. +++.++++++.... +....+..+...+ ......||||||||.
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~--~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGD--DVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHH--HCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccc--hHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467999999999999999999999996 99999999887611 1111122222111 111225999999999
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------CCCcEEEEEEeCCCC
Q 011305 313 IISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELVFVLAATNLPW 358 (489)
Q Consensus 313 l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~~~~viVIatTn~p~ 358 (489)
+.+.. ..........+++.||+.+++-.- .-.++++|+|+|--.
T Consensus 80 a~~~~--~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 80 AHPSN--SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp CSHTT--TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccc--cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 98852 223344455788999999874321 124688999998754
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.7e-11 Score=118.19 Aligned_cols=131 Identities=27% Similarity=0.416 Sum_probs=91.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcc-----cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG-----LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWR 283 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~-----~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~ 283 (489)
-++|++.+|+.|.-++..+ |..+... ..-...++||.||+|||||.||+.+|+.+++||..-++..|.. .|+
T Consensus 62 YVIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYV 139 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYV 139 (408)
T ss_pred heecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcccc
Confidence 4899999999887544332 2222111 1122368999999999999999999999999999999988864 577
Q ss_pred cc-hHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhh-HHHHHHHHHHHHHhcCCc
Q 011305 284 GD-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEH-EASRRLKTELLIQMDGLT 342 (489)
Q Consensus 284 g~-~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~-~~~~~i~~~LL~~ldg~~ 342 (489)
|+ .+..+..++..|. ....+|++|||||.++.+..+.+.-. -...-++.+||..++|..
T Consensus 140 GEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 140 GEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred chhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 76 3444455554431 23348999999999998764433222 223458889999998763
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-10 Score=123.94 Aligned_cols=147 Identities=19% Similarity=0.154 Sum_probs=109.5
Q ss_pred CCceEEEEc--CCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhc------CCcEEEE
Q 011305 241 PWKGILLFG--PPGTGKTMLAKAVATEC-----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHH------APSTIFL 307 (489)
Q Consensus 241 ~~~~vLL~G--ppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~------~p~VL~I 307 (489)
|+-+-+..| |++.||||+|+++|+++ +.+++++|+++..+. ..++.+...+... +..|++|
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334456779 99999999999999998 568999999985322 2444444433322 2369999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
||+|.|... .++.|+..|+.. +..+.+|++||+++.+.++++||| ..+.|+.|+.++....++
T Consensus 637 DEaD~Lt~~-------------AQnALLk~lEep---~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~ 699 (846)
T PRK04132 637 DEADALTQD-------------AQQALRRTMEMF---SSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLR 699 (846)
T ss_pred ECcccCCHH-------------HHHHHHHHhhCC---CCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHH
Confidence 999998532 467788888733 345778889999999999999999 668999999999988888
Q ss_pred HhcCCCCCCC-CCCHHHHHHHhcC
Q 011305 388 SLLPSQTGEE-SLPYDLLVERTEG 410 (489)
Q Consensus 388 ~~l~~~~~~~-~~dl~~La~~t~G 410 (489)
..+...+... +..+..++..+.|
T Consensus 700 ~I~~~Egi~i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 700 YIAENEGLELTEEGLQAILYIAEG 723 (846)
T ss_pred HHHHhcCCCCCHHHHHHHHHHcCC
Confidence 8877655542 3346667776666
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.7e-11 Score=123.75 Aligned_cols=196 Identities=19% Similarity=0.178 Sum_probs=117.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVV 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~ 279 (489)
....+++|+|.+...+++++.+.. ..+...+||++|++||||+.+|+.|+... +.||+.+||+.+.
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~ 142 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYS 142 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhC
Confidence 344588999999988888888766 12445789999999999999999998644 6799999998775
Q ss_pred hhhcc-----c-------hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC------
Q 011305 280 SKWRG-----D-------SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL------ 341 (489)
Q Consensus 280 ~~~~g-----~-------~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~------ 341 (489)
..... . ....-..+|+.|.. ++||+|||..+.+. .+..|+..+|.-
T Consensus 143 en~~~~eLFG~~kGaftGa~~~k~Glfe~A~G---GtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~rvG 206 (403)
T COG1221 143 ENLQEAELFGHEKGAFTGAQGGKAGLFEQANG---GTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYRRVG 206 (403)
T ss_pred cCHHHHHHhccccceeecccCCcCchheecCC---CEEehhhhhhCCHh-------------HHHHHHHHHHcCceEecC
Confidence 43221 0 11112234444444 79999999999765 334466666532
Q ss_pred --ccCCCcEEEEEEeCCC--CcccH--HHHh-hcccccccCCCCHHHH----HHHHHHhcC----CCCCCCCCCHHHHHH
Q 011305 342 --TQSDELVFVLAATNLP--WELDA--AMLR-RLEKRILVPLPDTEAR----RAMFESLLP----SQTGEESLPYDLLVE 406 (489)
Q Consensus 342 --~~~~~~viVIatTn~p--~~Ld~--al~r-Rf~~~i~~~~Pd~~eR----~~IL~~~l~----~~~~~~~~dl~~La~ 406 (489)
......|.+|++|+.. +.+-. .+.+ |+...|. +|+..+| ..+++++++ +.+.....+..+..+
T Consensus 207 ~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~rl~~~~I~--LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~ 284 (403)
T COG1221 207 GSQPRPVDVRLICATTEDLEEAVLAGADLTRRLNILTIT--LPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALR 284 (403)
T ss_pred CCCCcCCCceeeeccccCHHHHHHhhcchhhhhcCceec--CCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHH
Confidence 1234457788887653 22333 4444 4545555 4544444 345555543 223322222222222
Q ss_pred Hhc----CCcHHHHHHHHHHHHhHH
Q 011305 407 RTE----GYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 407 ~t~----G~sg~Di~~l~~~A~~~a 427 (489)
... --+.++++++++.+...+
T Consensus 285 ~L~~y~~pGNirELkN~Ve~~~~~~ 309 (403)
T COG1221 285 ALLAYDWPGNIRELKNLVERAVAQA 309 (403)
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHHh
Confidence 222 224567777666666543
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-10 Score=103.49 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=87.6
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------c
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------T 269 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-----------------------~ 269 (489)
|++.+++.|...+.. ...++.+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~~-----------~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKS-----------GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHC-----------TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHc-----------CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 788899999887755 234577999999999999999999998721 1
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 270 FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 270 ~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
++.++...-.. .-....++.+..... .....|++|||+|.+.. ...+.||..|+ ..+
T Consensus 70 ~~~~~~~~~~~---~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE---epp 130 (162)
T PF13177_consen 70 FIIIKPDKKKK---SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE---EPP 130 (162)
T ss_dssp EEEEETTTSSS---SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH---STT
T ss_pred eEEEecccccc---hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc---CCC
Confidence 33333221100 012234445444432 23456999999999853 36788999997 344
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCC
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~ 376 (489)
..+.+|.+|++++.+-+.++||+ ..+.++.
T Consensus 131 ~~~~fiL~t~~~~~il~TI~SRc-~~i~~~~ 160 (162)
T PF13177_consen 131 ENTYFILITNNPSKILPTIRSRC-QVIRFRP 160 (162)
T ss_dssp TTEEEEEEES-GGGS-HHHHTTS-EEEEE--
T ss_pred CCEEEEEEECChHHChHHHHhhc-eEEecCC
Confidence 56788889999999999999999 4465554
|
... |
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.4e-09 Score=104.17 Aligned_cols=190 Identities=17% Similarity=0.245 Sum_probs=113.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CcEE--E-Eec----cchh----hhh----ccch-HHHHHHH----HHHHHhcC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK-TTFF--N-ISA----SSVV----SKW----RGDS-EKLIKVL----FELARHHA 301 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~-~~~i--~-v~~----s~l~----~~~----~g~~-~~~l~~l----f~~A~~~~ 301 (489)
..++|+||+|+|||++++.+++++. ..+. . +++ .++. ..+ .+.. ......+ ........
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~ 123 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGK 123 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999875 2222 1 111 1111 110 1111 1111222 22233456
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-cCCCcEEEEEEeCCCC---cc----cHHHHhhcccccc
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPW---EL----DAAMLRRLEKRIL 373 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-~~~~~viVIatTn~p~---~L----d~al~rRf~~~i~ 373 (489)
+.+|+|||++.+... ....+ ..+-... .....+.|+.+. .++ .+ ...+.+|+...++
T Consensus 124 ~~vliiDe~~~l~~~-------------~~~~l-~~l~~~~~~~~~~~~vvl~g-~~~~~~~l~~~~~~~l~~r~~~~~~ 188 (269)
T TIGR03015 124 RALLVVDEAQNLTPE-------------LLEEL-RMLSNFQTDNAKLLQIFLVG-QPEFRETLQSPQLQQLRQRIIASCH 188 (269)
T ss_pred CeEEEEECcccCCHH-------------HHHHH-HHHhCcccCCCCeEEEEEcC-CHHHHHHHcCchhHHHHhheeeeee
Confidence 679999999987432 11112 1121111 122223333333 332 11 2356778888899
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCC-----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCC
Q 011305 374 VPLPDTEARRAMFESLLPSQTGE-----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELP 448 (489)
Q Consensus 374 ~~~Pd~~eR~~IL~~~l~~~~~~-----~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~ 448 (489)
++..+.++..+++...+...+.. .+..++.|.+.+.|.. +.|..++..+...+..+-
T Consensus 189 l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p-~~i~~l~~~~~~~a~~~~----------------- 250 (269)
T TIGR03015 189 LGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP-RLINILCDRLLLSAFLEE----------------- 250 (269)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc-cHHHHHHHHHHHHHHHcC-----------------
Confidence 99999999999998887644321 2234677888888875 559899998888765531
Q ss_pred CCCCCCHHHHHHHHhhhC
Q 011305 449 QIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 449 ~~~~It~eDf~~AL~~~~ 466 (489)
...|+.++++.++..++
T Consensus 251 -~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 251 -KREIGGEEVREVIAEID 267 (269)
T ss_pred -CCCCCHHHHHHHHHHhh
Confidence 12499999999998765
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=8.5e-10 Score=115.39 Aligned_cols=146 Identities=25% Similarity=0.334 Sum_probs=110.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~ 318 (489)
.+-.++||+||||+|||.||-.+|...+.||+.+-.. ++.+-.-...-..++.+|+.|....-+||++|+++.|..-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~-- 613 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDY-- 613 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcc--
Confidence 3446799999999999999999999999999987554 4333221112245789999999988899999999998642
Q ss_pred ccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH-HHHhhcccccccCCCCH-HHHHHHHHH
Q 011305 319 EARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEKRILVPLPDT-EARRAMFES 388 (489)
Q Consensus 319 ~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~-al~rRf~~~i~~~~Pd~-~eR~~IL~~ 388 (489)
.......+..++.+|+..+......+...+|++||.+.+-|.. .+...|+..+.+|..+. ++..+++..
T Consensus 614 -vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 614 -VPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred -cccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 2233455677888999999877777788989998887655532 56778999999988755 556666554
|
|
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=120.02 Aligned_cols=132 Identities=18% Similarity=0.233 Sum_probs=90.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccchH--HHHH--------HHHHHHHhcCCcEEEEchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSE--KLIK--------VLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~~--~~l~--------~lf~~A~~~~p~VL~IDEi 310 (489)
.+|||.|+||||||++|+++++.+. .||+.+..........|... ..+. .++.. ...++|||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~---A~~GvL~lDEi 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDE---APRGVLYVDMA 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeee---CCCCcEeccch
Confidence 6899999999999999999999875 46888875333333333321 0000 01111 12369999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC---cccHHHHhhcccccccCC-
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPL- 376 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~---~Ld~al~rRf~~~i~~~~- 376 (489)
+.+.+. +++.|+..|+.-. ..+..+.||+|+|..+ .+.+++.+||...+.+..
T Consensus 94 ~rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~ 160 (589)
T TIGR02031 94 NLLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDV 160 (589)
T ss_pred hhCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCC
Confidence 988644 5667777775221 1123577888888765 589999999998776654
Q ss_pred CCHHHHHHHHHHhc
Q 011305 377 PDTEARRAMFESLL 390 (489)
Q Consensus 377 Pd~~eR~~IL~~~l 390 (489)
|+.++|.+|++..+
T Consensus 161 ~~~~er~eil~~~~ 174 (589)
T TIGR02031 161 ASQDLRVEIVRRER 174 (589)
T ss_pred CCHHHHHHHHHHHH
Confidence 57888999998876
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.5e-09 Score=105.21 Aligned_cols=128 Identities=13% Similarity=0.209 Sum_probs=91.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeccchhhhhccchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSVVSKWRGDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~------------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~ 296 (489)
.++.+||+||+|+||+++|+++|+.+... ++.+...+ ++. -.-..++.+.+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~--I~id~iR~l~~~ 98 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKD--IGVDQVREINEK 98 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCC--CCHHHHHHHHHH
Confidence 45789999999999999999999987321 22222110 110 122334444333
Q ss_pred H----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 297 A----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 297 A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
+ ......|++||++|.+.. ...+.||+.++ .++..+++|.+|+.++.+.+.++||+ ..+
T Consensus 99 ~~~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE---EPp~~~~fiL~t~~~~~llpTI~SRC-~~~ 161 (325)
T PRK06871 99 VSQHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE---EPRPNTYFLLQADLSAALLPTIYSRC-QTW 161 (325)
T ss_pred HhhccccCCceEEEEechhhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChHhCchHHHhhc-eEE
Confidence 3 233446999999999853 35688999997 34556778889999999999999999 568
Q ss_pred ccCCCCHHHHHHHHHHh
Q 011305 373 LVPLPDTEARRAMFESL 389 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~ 389 (489)
.|+.|+.++..+.|...
T Consensus 162 ~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 162 LIHPPEEQQALDWLQAQ 178 (325)
T ss_pred eCCCCCHHHHHHHHHHH
Confidence 99999999888877764
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.6e-10 Score=118.67 Aligned_cols=145 Identities=28% Similarity=0.354 Sum_probs=92.0
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC------------------
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------------------ 267 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~------------------ 267 (489)
..|+++.|++.+++.+.-.+ ...++++|.||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 36899999999987766433 2347899999999999999999987431
Q ss_pred ----------CcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 268 ----------TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 268 ----------~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
.||...+++.......|.........+..|.. ++|||||++.+.. .++..|++.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~---GvLfLDEi~e~~~-------------~~~~~L~~~ 318 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHN---GVLFLDELPEFKR-------------SVLDALREP 318 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCC---CeEecCChhhCCH-------------HHHHHHHHH
Confidence 22222222211111112111111112333333 8999999987743 355666666
Q ss_pred hcCCc----------cCCCcEEEEEEeCCC------C-----------------cccHHHHhhcccccccCCCCHH
Q 011305 338 MDGLT----------QSDELVFVLAATNLP------W-----------------ELDAAMLRRLEKRILVPLPDTE 380 (489)
Q Consensus 338 ldg~~----------~~~~~viVIatTn~p------~-----------------~Ld~al~rRf~~~i~~~~Pd~~ 380 (489)
|+.-. ..+..+.+|+++|.- . .+...+++||+..+.++.++.+
T Consensus 319 LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 319 IEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 64321 112457788888852 1 3788999999999999988765
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.7e-09 Score=102.43 Aligned_cols=177 Identities=16% Similarity=0.230 Sum_probs=125.4
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-C--CcE------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-K--TTF------ 270 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~--~~~------ 270 (489)
...+.+.+++.+.+.++....|+..... ..-.++|+|||+|+||-|.+.++-+++ | .+=
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~~------------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSST------------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhccc------------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 3456677888999999999998875531 122589999999999999999999988 2 111
Q ss_pred --------------------EEEeccchhhhhccchH-HHHHHHHHHHHhcC---------CcEEEEchhhhHHhhhccc
Q 011305 271 --------------------FNISASSVVSKWRGDSE-KLIKVLFELARHHA---------PSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 271 --------------------i~v~~s~l~~~~~g~~~-~~l~~lf~~A~~~~---------p~VL~IDEiD~l~~~r~~~ 320 (489)
++++.++ .|.-. -.++.+.....+.+ ..|++|.|+|.|..+
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSD-----aG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d---- 142 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSD-----AGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD---- 142 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhh-----cCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH----
Confidence 1222222 23222 23455555443322 359999999999644
Q ss_pred chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC
Q 011305 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP 400 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d 400 (489)
.+.+|-..|+.+. ..+-+|..+|..+.+-++++||+ ..+.+|.|+.++...++...+.+.++....+
T Consensus 143 ---------AQ~aLRRTMEkYs---~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~lp~~ 209 (351)
T KOG2035|consen 143 ---------AQHALRRTMEKYS---SNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQLPKE 209 (351)
T ss_pred ---------HHHHHHHHHHHHh---cCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhcccCcHH
Confidence 4456667776443 33557778999999999999999 6799999999999999999999888876544
Q ss_pred -HHHHHHHhcC
Q 011305 401 -YDLLVERTEG 410 (489)
Q Consensus 401 -l~~La~~t~G 410 (489)
+..+++.+.|
T Consensus 210 ~l~rIa~kS~~ 220 (351)
T KOG2035|consen 210 LLKRIAEKSNR 220 (351)
T ss_pred HHHHHHHHhcc
Confidence 4556665554
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.2e-09 Score=104.54 Aligned_cols=223 Identities=20% Similarity=0.287 Sum_probs=128.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhh
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~ 280 (489)
.-||...+++.|... ...+.+|.. ....++||+|++|.|||++++.++... ..|++.+.+..-.+
T Consensus 35 rWIgY~~A~~~L~~L-~~Ll~~P~~-----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~ 108 (302)
T PF05621_consen 35 RWIGYPRAKEALDRL-EELLEYPKR-----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPD 108 (302)
T ss_pred CeecCHHHHHHHHHH-HHHHhCCcc-----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCC
Confidence 345666655555442 222333321 234689999999999999999999755 35777776532211
Q ss_pred --------------hh--ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC
Q 011305 281 --------------KW--RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (489)
Q Consensus 281 --------------~~--~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~ 344 (489)
.+ .....+....+....+..++.+|+|||++.+...... . +.++++.+..+.+.
T Consensus 109 ~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~------~----qr~~Ln~LK~L~Ne 178 (302)
T PF05621_consen 109 ERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR------K----QREFLNALKFLGNE 178 (302)
T ss_pred hHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH------H----HHHHHHHHHHHhhc
Confidence 11 0123333444556667778899999999997643211 1 22233333333222
Q ss_pred CCcEEEEEE-eCCC---CcccHHHHhhcccccccCCC-CHHHHHHHHHHhcCCCCCCCC--CC---H-HHHHHHhcCCcH
Q 011305 345 DELVFVLAA-TNLP---WELDAAMLRRLEKRILVPLP-DTEARRAMFESLLPSQTGEES--LP---Y-DLLVERTEGYSG 413 (489)
Q Consensus 345 ~~~viVIat-Tn~p---~~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~~l~~~~~~~~--~d---l-~~La~~t~G~sg 413 (489)
-. +.+|+. |... -.-|+.+.+||.. +.+|.- ..++...++..+-...++... .. + ..|-..+.|.+|
T Consensus 179 L~-ipiV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 179 LQ-IPIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG 256 (302)
T ss_pred cC-CCeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH
Confidence 22 223333 3222 1257899999944 555653 334455666666555555422 22 2 335556777664
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 414 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
++..+++.|+..|++. +.+ -||.+.+.+ +.-+.||-.
T Consensus 257 -~l~~ll~~aA~~AI~s------G~E------------~It~~~l~~-~~~~~ps~R 293 (302)
T PF05621_consen 257 -ELSRLLNAAAIAAIRS------GEE------------RITREILDK-IDWVPPSER 293 (302)
T ss_pred -HHHHHHHHHHHHHHhc------CCc------------eecHHHHhh-CCCcChhhh
Confidence 8899999999988763 111 288888865 666666654
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=111.30 Aligned_cols=66 Identities=36% Similarity=0.421 Sum_probs=47.0
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchh
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVV 279 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~ 279 (489)
.-+.++|+.++++.+--.+.+-.. ..-.++++||.||||||||.+|-++|+++| .||+.++++++.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred ccccccChHHHHHHHHHHHHHHhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 356899999999998755544221 122458999999999999999999999996 888888776654
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.8e-09 Score=117.21 Aligned_cols=203 Identities=12% Similarity=0.133 Sum_probs=118.4
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eecc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISAS 276 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~-v~~s 276 (489)
.+..++.+.++++|+|++...+.|+.++..... ...+.+.++|+||||||||++++.+|++++..+++ ++..
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 456677888999999999999999988754221 12334569999999999999999999998765543 1111
Q ss_pred ---chhhhh------------ccchHHHHHHHHHHHHh----------cCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 277 ---SVVSKW------------RGDSEKLIKVLFELARH----------HAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 277 ---~l~~~~------------~g~~~~~l~~lf~~A~~----------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
.....| ........+.++..+.. ....||+|||++.+.... ...+
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----------~~~l 215 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----------TRAL 215 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----------HHHH
Confidence 000000 01122333444444431 234699999999876431 1122
Q ss_pred HHHHH-HhcCCccCCCcEEEEEEeCCCC--------------cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 332 TELLI-QMDGLTQSDELVFVLAATNLPW--------------ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 332 ~~LL~-~ldg~~~~~~~viVIatTn~p~--------------~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
..++. ... ......+|+++|..+. .+.+++++ |. ..|.|.+.+.....+.|+..+....
T Consensus 216 q~lLr~~~~---e~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~ 291 (637)
T TIGR00602 216 HEILRWKYV---SIGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEA 291 (637)
T ss_pred HHHHHHHhh---cCCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhh
Confidence 33333 211 1222233444442222 13478886 55 4689999999997777777776542
Q ss_pred CC--CC------CCHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 395 GE--ES------LPYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 395 ~~--~~------~dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
.. .+ ..++.|+.. +.+|++.++.....
T Consensus 292 ~~~~~~~~~p~~~~l~~I~~~----s~GDiRsAIn~LQf 326 (637)
T TIGR00602 292 KKNGEKIKVPKKTSVELLCQG----CSGDIRSAINSLQF 326 (637)
T ss_pred hccccccccCCHHHHHHHHHh----CCChHHHHHHHHHH
Confidence 21 11 234455553 34577766654444
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=107.31 Aligned_cols=132 Identities=16% Similarity=0.216 Sum_probs=91.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc------------------------EEEEeccch-hhhhccchHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT------------------------FFNISASSV-VSKWRGDSEKLIKVLF 294 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~------------------------~i~v~~s~l-~~~~~g~~~~~l~~lf 294 (489)
..++.+||+||+|+||+++|.++|+.+-+. ++.+....- ..-.+++.....+.+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 445789999999999999999999987321 222221100 0011222222222333
Q ss_pred HHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccccc
Q 011305 295 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV 374 (489)
Q Consensus 295 ~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~ 374 (489)
.........|++||++|.+.. ...|.||+.++ .++..+++|..|++++.+.+.++||+. .+.|
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~~t~fiL~t~~~~~lLpTIrSRCq-~~~~ 164 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE---EPPENTWFFLACREPARLLATLRSRCR-LHYL 164 (334)
T ss_pred hccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc---CCCCCeEEEEEECChhhChHHHHhccc-cccC
Confidence 333334457999999999853 35688999997 345567788899999999999999995 5899
Q ss_pred CCCCHHHHHHHHHH
Q 011305 375 PLPDTEARRAMFES 388 (489)
Q Consensus 375 ~~Pd~~eR~~IL~~ 388 (489)
+.|+.++....|..
T Consensus 165 ~~~~~~~~~~~L~~ 178 (334)
T PRK07993 165 APPPEQYALTWLSR 178 (334)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999888887764
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.3e-09 Score=118.20 Aligned_cols=166 Identities=25% Similarity=0.262 Sum_probs=100.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcc-cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----eccchhhhhc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTG-LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~-~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v----~~s~l~~~~~ 283 (489)
.+|.|++.+|..+.-.+...... ....+ ......+|||+|+||||||++|+++++.+....+.. ++..+.....
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~-~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHK-NLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCcc-ccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 47899999988887555332111 00000 122335899999999999999999999875433221 2222211100
Q ss_pred cc---hHHHH-HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEE
Q 011305 284 GD---SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 349 (489)
Q Consensus 284 g~---~~~~l-~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~vi 349 (489)
.+ .+..+ ...+..| ..++++|||+|.+... .+..|+..|+.-. ..+....
T Consensus 282 ~~~~~g~~~~~~G~l~~A---~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~~~~ 345 (509)
T smart00350 282 RDPETREFTLEGGALVLA---DNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNARCS 345 (509)
T ss_pred EccCcceEEecCccEEec---CCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecCCcE
Confidence 00 00000 0011112 2379999999998543 3455666664211 1224577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccccc-ccCCCCHHHHHHHHHHhcC
Q 011305 350 VLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 350 VIatTn~p~-------------~Ld~al~rRf~~~i-~~~~Pd~~eR~~IL~~~l~ 391 (489)
||||+|..+ .+++++++||+..+ ....|+.+...+|.++.+.
T Consensus 346 viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 346 VLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred EEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 898998652 48999999997654 4577899999999988653
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=7.7e-09 Score=105.34 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=106.5
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---------------------EEE
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------------------FFN 272 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------------------~i~ 272 (489)
+..+.+.+...+.. ..-++.+||+||+|+||+++|.++|+.+-+. ++.
T Consensus 9 ~~~~~~~l~~~~~~-----------~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALDA-----------GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 34566666665533 2345689999999999999999999977321 222
Q ss_pred Ee-ccchhhhh--ccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 273 IS-ASSVVSKW--RGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 273 v~-~s~l~~~~--~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
+. ..+-.++. ..-.-..++.+.+.+.. ....|++||++|.+.. ...|.||+.++. .+
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLEE---Pp 141 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLEE---PS 141 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhhC---CC
Confidence 21 00000000 00112344554443332 2336999999999843 356889999873 34
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 416 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di 416 (489)
..+++|.+|+.++.+.+.++||+ ..+.|+.|+.++-...|... +.. ..+...++..+.|-.+..+
T Consensus 142 ~~~~fiL~~~~~~~lLpTIrSRC-q~i~~~~~~~~~~~~~L~~~----~~~-~~~a~~~~~l~~G~p~~A~ 206 (319)
T PRK08769 142 PGRYLWLISAQPARLPATIRSRC-QRLEFKLPPAHEALAWLLAQ----GVS-ERAAQEALDAARGHPGLAA 206 (319)
T ss_pred CCCeEEEEECChhhCchHHHhhh-eEeeCCCcCHHHHHHHHHHc----CCC-hHHHHHHHHHcCCCHHHHH
Confidence 45667778899999999999999 56899999998888777642 211 1223345555666554443
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.5e-08 Score=101.62 Aligned_cols=144 Identities=16% Similarity=0.123 Sum_probs=98.8
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----------------------cE
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----------------------TF 270 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-----------------------~~ 270 (489)
+....+.+...+.. ...++.+||+||.|+||+++|+++|+.+-. .+
T Consensus 8 l~~~~~~l~~~~~~-----------~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLDA-----------GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 34566666665533 234578999999999999999999997722 12
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
+.+.... .++.. .-..++.+.+.+. .....|++||++|.+.. ...|.||+.++ ..+.
T Consensus 77 ~~i~p~~-~~~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE---EPp~ 137 (319)
T PRK06090 77 HVIKPEK-EGKSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE---EPAP 137 (319)
T ss_pred EEEecCc-CCCcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc---CCCC
Confidence 3332211 00101 1223444433332 23347999999999853 35688999997 3455
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
++++|..|++++.+-+.++||+ ..+.|+.|+.++..+.+..
T Consensus 138 ~t~fiL~t~~~~~lLpTI~SRC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 138 NCLFLLVTHNQKRLLPTIVSRC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred CeEEEEEECChhhChHHHHhcc-eeEeCCCCCHHHHHHHHHH
Confidence 5778889999999999999999 5689999999988887765
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.4e-10 Score=100.40 Aligned_cols=106 Identities=30% Similarity=0.365 Sum_probs=59.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chhh-hhccc----hHH-----HHHHHHHHHHhcCCcEEEEchhhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVVS-KWRGD----SEK-----LIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~~-~~~g~----~~~-----~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
||||+|+||+|||++|+++|+.++..|..|.+. ++.. ...|. .+. .-.-+| ..|+++||++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------~~ill~DEiNr 73 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------TNILLADEINR 73 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT--------SSEEEEETGGG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh-------hceeeeccccc
Confidence 689999999999999999999999999988764 3321 11111 000 000111 15999999988
Q ss_pred HHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEEEEEEeCCCC-----cccHHHHhhcc
Q 011305 313 IISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLPW-----ELDAAMLRRLE 369 (489)
Q Consensus 313 l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~viVIatTn~p~-----~Ld~al~rRf~ 369 (489)
..++ +++.||+.|..-. .-++..+||||-|..+ .|++++++||-
T Consensus 74 appk-------------tQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 74 APPK-------------TQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp S-HH-------------HHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred CCHH-------------HHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 7655 5667777775321 2345688888888765 48999999983
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-09 Score=105.98 Aligned_cols=143 Identities=20% Similarity=0.199 Sum_probs=82.3
Q ss_pred cCCCCCCCcccc----CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 011305 201 RGSPDVKWESIK----GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 273 (489)
Q Consensus 201 ~~~~~~~~~dli----G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v 273 (489)
......+|++.. |+..++..++..+..+. ....+++|+||||||||+||.++++++ +..++.+
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~----------~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i 135 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELM----------TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV 135 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHH----------hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 344566788875 33334444454443321 123689999999999999999999988 6778888
Q ss_pred eccchhhhhccchH--HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 274 SASSVVSKWRGDSE--KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 274 ~~s~l~~~~~g~~~--~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
+..++......... .....++... ....+|+|||+...... .. ....|...++.-.... ..+|
T Consensus 136 ~~~~l~~~l~~~~~~~~~~~~~l~~l--~~~dLLiIDDlg~~~~s--------~~---~~~~l~~ii~~R~~~~--~pti 200 (248)
T PRK12377 136 TVPDVMSRLHESYDNGQSGEKFLQEL--CKVDLLVLDEIGIQRET--------KN---EQVVLNQIIDRRTASM--RSVG 200 (248)
T ss_pred EHHHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCCCC--------HH---HHHHHHHHHHHHHhcC--CCEE
Confidence 88877654321100 0111223222 34579999999664321 11 1233444444222222 2256
Q ss_pred EEeCCCCc-----ccHHHHhhc
Q 011305 352 AATNLPWE-----LDAAMLRRL 368 (489)
Q Consensus 352 atTn~p~~-----Ld~al~rRf 368 (489)
.|||.... +..++.+|+
T Consensus 201 itSNl~~~~l~~~~~~ri~dRl 222 (248)
T PRK12377 201 MLTNLNHEAMSTLLGERVMDRM 222 (248)
T ss_pred EEcCCCHHHHHHHhhHHHHHHH
Confidence 68987622 455666666
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-09 Score=114.40 Aligned_cols=195 Identities=21% Similarity=0.275 Sum_probs=116.6
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~ 283 (489)
.+.+++|.....+.+.+.+... .....+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKI----------APSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 4567888887777777665432 1234679999999999999999999876 47899999987633211
Q ss_pred cchHHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 284 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 284 g~~~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
-..+|.. ......++|||||++.|... ++..|+..++.-.
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~l~~~l~~~~~~~~~~ 267 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLN-------------LQAKLLRFLQERVIERLGG 267 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCHH-------------HHHHHHHHHhhCeEEeCCC
Confidence 1111110 11123489999999998654 4455666554221
Q ss_pred --cCCCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
.....+.+|++|+.. ..+.+.+..|+ ..+.+..|...+|.+ ++++++...... ..+...
T Consensus 268 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~ 339 (445)
T TIGR02915 268 REEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRDGDAVLLANAFLERFARE-------LKRKTK 339 (445)
T ss_pred CceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhchhhHHHHHHHHHHHHHHH-------hCCCCC
Confidence 111246677777665 23556677777 346677777777765 333333221100 000113
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
++++..+..|.+..|.++++.+.+.++..
T Consensus 340 ~~~~~a~~~L~~~~wpgNvreL~~~i~~a 368 (445)
T TIGR02915 340 GFTDDALRALEAHAWPGNVRELENKVKRA 368 (445)
T ss_pred CCCHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 45566666666666666666655555443
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.1e-09 Score=109.17 Aligned_cols=133 Identities=17% Similarity=0.212 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc-------------------------EEEEeccchh---------------
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT-------------------------FFNISASSVV--------------- 279 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~-------------------------~i~v~~s~l~--------------- 279 (489)
..++.+||+||+|+||+++|+++|+.+.+. ++.+......
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 345789999999999999999999988432 1222111000
Q ss_pred ---hhh-----ccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 280 ---SKW-----RGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 280 ---~~~-----~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
++. ..-.-..++.+..... .....|++||++|.+... ..|.||+.++ ..+..
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~-------------AaNaLLKtLE---EPp~~ 162 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVA-------------AANALLKTLE---EPPPG 162 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHH-------------HHHHHHHHhc---CCCcC
Confidence 000 0001123444444332 223469999999998533 5688999987 35556
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHh
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 389 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~ 389 (489)
+++|.+|++++.+.+.++||+ ..+.|++|+.++..+.|...
T Consensus 163 t~fiL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 163 TVFLLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred cEEEEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 778889999999999999999 67999999999998888764
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=113.91 Aligned_cols=47 Identities=45% Similarity=0.647 Sum_probs=40.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..|.||+|++.+|+.+.... ..++|+|++||||||||++|+.+..-+
T Consensus 176 ~D~~DV~GQ~~AKrAleiAA--------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAA--------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred cchhhhcCcHHHHHHHHHHH--------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 36899999999999999654 345899999999999999999987754
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.9e-09 Score=113.18 Aligned_cols=213 Identities=21% Similarity=0.197 Sum_probs=132.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~ 283 (489)
.+.+++|.....+.+.+.+... ......++++|++|||||++|++++... +.||+.++|..+.....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~----------~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRL----------SRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHHH----------hccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 4678999887777777665432 2234679999999999999999999986 57999999987632211
Q ss_pred cchHHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------
Q 011305 284 GDSEKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------ 342 (489)
Q Consensus 284 g~~~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------ 342 (489)
-..+|.. ......+.|||||+|.+... .+..|+..++.-.
T Consensus 206 ------~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~ 266 (469)
T PRK10923 206 ------ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGG 266 (469)
T ss_pred ------HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCC
Confidence 1112111 01223479999999998654 3445666665321
Q ss_pred --cCCCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhc
Q 011305 343 --QSDELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTE 409 (489)
Q Consensus 343 --~~~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~ 409 (489)
.....+.+|+||+.. ..+.+.+..|+. .+.+..|...+|.+ ++.+++...... ......
T Consensus 267 ~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l~-~~~i~~PpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~ 338 (469)
T PRK10923 267 YAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLN-VIRVHLPPLRERREDIPRLARHFLQVAARE-------LGVEAK 338 (469)
T ss_pred CCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHhc-ceeecCCCcccchhhHHHHHHHHHHHHHHH-------cCCCCC
Confidence 111235677777654 235677777883 35555665555544 555554321110 001123
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
++++..+..|.+..|.++++.+.+.++......+. ..|+.+|+...+
T Consensus 339 ~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~~------~~i~~~~l~~~~ 385 (469)
T PRK10923 339 LLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAG------QEVLIQDLPGEL 385 (469)
T ss_pred CcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHHCcHhh
Confidence 67888888888888888888888877765443322 236677765433
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.4e-09 Score=105.69 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=74.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc----hHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~----~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
..+++|+|++|||||+||.++++++ +.+++.++.+++....... .......+++... ...+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~--~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLV--NADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhc--CCCEEEEecccCCC
Confidence 4679999999999999999999987 7889999988876543211 1111222333222 34699999995421
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-c----ccHHHHhhc---ccccccCCCCH
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-E----LDAAMLRRL---EKRILVPLPDT 379 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~-~----Ld~al~rRf---~~~i~~~~Pd~ 379 (489)
. . ...+..|+..++....... .+|.|||.+. . ++.++.+|+ ...+.++-+|.
T Consensus 192 ~--------t---~~~~~~l~~iin~r~~~~~--~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 192 D--------T---EWAREKVYNIIDSRYRKGL--PTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred C--------C---HHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 1 1 1123445555553322222 3566888762 2 467788885 23344555553
|
|
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.9e-08 Score=103.80 Aligned_cols=162 Identities=25% Similarity=0.336 Sum_probs=104.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec---------
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--------- 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--------- 275 (489)
+..|..++|++..|..|--..+.| .-.++||.|+.||||||++|+++.-+.---....|
T Consensus 13 ~~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 13 NLPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred ccchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 345889999999999887543332 23789999999999999999999987211111111
Q ss_pred ----cc-------------------hhhhhccchHH----------HHHH---HHH---HHHhcCCcEEEEchhhhHHhh
Q 011305 276 ----SS-------------------VVSKWRGDSEK----------LIKV---LFE---LARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 276 ----s~-------------------l~~~~~g~~~~----------~l~~---lf~---~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.+ ++..-.|.++. .++. .|. .++.+. +||++||+..|..+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnR-GIlYvDEvnlL~d~ 159 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANR-GILYVDEVNLLDDH 159 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccC-CEEEEeccccccHH
Confidence 00 00000112222 1110 110 122233 79999999887533
Q ss_pred hcccchhhHHHHHHHHHHHHHhc---------CCc-cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCC-CHHHHHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMD---------GLT-QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRA 384 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ld---------g~~-~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~P-d~~eR~~ 384 (489)
+++.||+.+. |++ ..+..+++|+|+|.-+ .|-+.|++||...+.+..| +.++|.+
T Consensus 160 -------------lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~ 226 (423)
T COG1239 160 -------------LVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVE 226 (423)
T ss_pred -------------HHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHH
Confidence 6666766654 332 2344577888877653 4899999999999988776 8889999
Q ss_pred HHHHhcCC
Q 011305 385 MFESLLPS 392 (489)
Q Consensus 385 IL~~~l~~ 392 (489)
|++..+..
T Consensus 227 Ii~r~~~f 234 (423)
T COG1239 227 IIRRRLAF 234 (423)
T ss_pred HHHHHHHh
Confidence 99987754
|
|
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.5e-09 Score=111.18 Aligned_cols=144 Identities=26% Similarity=0.311 Sum_probs=90.4
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec------c
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA------S 276 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~------s 276 (489)
.|.++.|+..+++.+.-. ....++++|.||||+|||++++.++..+. ...+.+.. .
T Consensus 189 d~~~v~Gq~~~~~al~la--------------a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEIT--------------AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhhee--------------ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 678889988777765421 23457899999999999999999998652 11111111 0
Q ss_pred -----ch-----h--------hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011305 277 -----SV-----V--------SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (489)
Q Consensus 277 -----~l-----~--------~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~l 338 (489)
.+ . ...+|.....-...+..|.. ++|||||++.+.. .++..|++.|
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~g---GvLfLDEi~e~~~-------------~~~~~L~~~L 318 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHN---GVLFLDELPEFER-------------RTLDALREPI 318 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccC---CEEecCCchhCCH-------------HHHHHHHHHH
Confidence 00 0 00112111111223444444 8999999977643 3556677666
Q ss_pred cCCc----------cCCCcEEEEEEeCCCC---------------------cccHHHHhhcccccccCCCCHH
Q 011305 339 DGLT----------QSDELVFVLAATNLPW---------------------ELDAAMLRRLEKRILVPLPDTE 380 (489)
Q Consensus 339 dg~~----------~~~~~viVIatTn~p~---------------------~Ld~al~rRf~~~i~~~~Pd~~ 380 (489)
+.-. ..+..+.+|+|+|... .++.++++||+..+.++.|+.+
T Consensus 319 E~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 319 ESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 4221 1234578899998752 3777999999999999988654
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.3e-08 Score=104.38 Aligned_cols=193 Identities=21% Similarity=0.261 Sum_probs=114.1
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~ 286 (489)
.++|.......+.+.+.... .....++++|++|||||++|+++.+.. +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~--- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----------QSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL--- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----------cCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH---
Confidence 46776655555544443321 223579999999999999999999876 57999999987633211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------c
Q 011305 287 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 343 (489)
Q Consensus 287 ~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~ 343 (489)
-..+|.. ......++|||||+|.|... .+..|+..++.-. .
T Consensus 202 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~~~ 265 (444)
T PRK15115 202 ---ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSNRD 265 (444)
T ss_pred ---HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCCce
Confidence 1112211 11123479999999998655 3445666554221 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....+.+|++|+..- .+.+.+..|+ ..+.+..|...+|.+ +++.++...... ..+...+++
T Consensus 266 ~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~-------~~~~~~~~~ 337 (444)
T PRK15115 266 IDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALAERTEDIPLLANHLLRQAAER-------HKPFVRAFS 337 (444)
T ss_pred eeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChHhccccHHHHHHHHHHHHHHH-------hCCCCCCcC
Confidence 112467788887531 2334444455 336677788878764 233333221100 000123567
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 413 GSDIRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 413 g~Di~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
..-+..|.+..|.++++++.+.++..-
T Consensus 338 ~~a~~~L~~~~WpgNvreL~~~i~~~~ 364 (444)
T PRK15115 338 TDAMKRLMTASWPGNVRQLVNVIEQCV 364 (444)
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 777777888888888877777666543
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.1e-08 Score=107.17 Aligned_cols=230 Identities=21% Similarity=0.213 Sum_probs=142.4
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeccch
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSV 278 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~s~l 278 (489)
+.|.+.+....++...+...+.-. ..+..+++.|-||||||.+++.+-+++ ...+++||+-.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~-------~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ-------GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC-------CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 345566666666666665544320 122468999999999999999999876 356888988766
Q ss_pred hhh----------hccc------hHHHHHHHHHHH-HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 279 VSK----------WRGD------SEKLIKVLFELA-RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 279 ~~~----------~~g~------~~~~l~~lf~~A-~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
.+. +.|+ .-..+..-|... ....++||+|||+|.|....+ +-|++.++..
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q-------------dVlYn~fdWp 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ-------------DVLYNIFDWP 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH-------------HHHHHHhcCC
Confidence 532 1111 111222223211 234568999999999986532 3477788888
Q ss_pred ccCCCcEEEEEEeCCCCc----ccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHH
Q 011305 342 TQSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDI 416 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~~----Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di 416 (489)
...+..++||+.+|..+. |...+.+|.+ ..+.|.+++..+..+|+...+.....-....++-+|+.....|| |.
T Consensus 536 t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSG-Da 614 (767)
T KOG1514|consen 536 TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSG-DA 614 (767)
T ss_pred cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccc-cH
Confidence 778888888888887654 3334445654 56889999999999999999877622222223334444444444 22
Q ss_pred H---HHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 417 R---LVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 417 ~---~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
+ .+|++|+..+-.+.. .. .......|++-|+.+|++.+..+..
T Consensus 615 Rraldic~RA~Eia~~~~~--------~~---k~~~~q~v~~~~v~~Ai~em~~~~~ 660 (767)
T KOG1514|consen 615 RRALDICRRAAEIAEERNV--------KG---KLAVSQLVGILHVMEAINEMLASPY 660 (767)
T ss_pred HHHHHHHHHHHHHhhhhcc--------cc---cccccceeehHHHHHHHHHHhhhhH
Confidence 2 244444443332211 00 1112234899999999999977643
|
|
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=101.14 Aligned_cols=168 Identities=18% Similarity=0.171 Sum_probs=113.6
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc------E
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT------F 270 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~------~ 270 (489)
..+.+++++-.++++++++++...+.+..... .-.+.|+|||||||||+...+.|..+-.+ +
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~------------~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSGMP------------GLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhccCC------------CCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 34667788888999999999999998874331 12499999999999999999999998553 2
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHh-------cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARH-------HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~-------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~ 343 (489)
..+++++-.+. + .-+.-...|..++. ..+..+++||+|++..+ .+++|-..++.+
T Consensus 97 lelnaSd~rgi--d-~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~-------------AQnALRRviek~-- 158 (360)
T KOG0990|consen 97 LELNASDDRGI--D-PVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD-------------AQNALRRVIEKY-- 158 (360)
T ss_pred HHhhccCccCC--c-chHHHHHHHHhhccceeccccCceeEEEecchhHhhHH-------------HHHHHHHHHHHh--
Confidence 23333332221 1 12222334544442 35689999999999655 334444444322
Q ss_pred CCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC
Q 011305 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE 396 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~ 396 (489)
..++.++..+|.+..+.+++++||.. +.|.+.+...-...+.++.......
T Consensus 159 -t~n~rF~ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~ 209 (360)
T KOG0990|consen 159 -TANTRFATISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKE 209 (360)
T ss_pred -ccceEEEEeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhh
Confidence 23344556789999999999999955 6666667666677777777655544
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=108.11 Aligned_cols=197 Identities=22% Similarity=0.275 Sum_probs=113.2
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR 283 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~ 283 (489)
.+..++|.......+.+.+.... ....++|++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIA----------LSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHHHc----------CCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 34568887776666655544322 234689999999999999999998875 58999999987643211
Q ss_pred -----cchHH-------HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------c
Q 011305 284 -----GDSEK-------LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------Q 343 (489)
Q Consensus 284 -----g~~~~-------~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~ 343 (489)
|.... .....+.. ...++|||||+|.+... ++..|+..++.-. .
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~---a~~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~~~ 274 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFER---ANEGTLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGHQT 274 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEE---CCCCEEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCCce
Confidence 10000 00011222 23479999999998654 3455666654321 1
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....+.||++|+..- .+.+.+..|+. .+.+..|+..+|.+ ++..++...... ......+++
T Consensus 275 ~~~~~rii~~t~~~l~~~~~~g~~~~~l~~~l~-~~~i~~ppLreR~~di~~l~~~~l~~~~~~-------~~~~~~~~~ 346 (457)
T PRK11361 275 IKVDIRIIAATNRDLQAMVKEGTFREDLFYRLN-VIHLILPPLRDRREDISLLANHFLQKFSSE-------NQRDIIDID 346 (457)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHhc-cceecCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcC
Confidence 112467888887642 35566666773 36777787777754 333333221100 000113455
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 413 GSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 413 g~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
...+..+...-|.++++.+.+.++.
T Consensus 347 ~~a~~~L~~~~wpgNv~eL~~~~~~ 371 (457)
T PRK11361 347 PMAMSLLTAWSWPGNIRELSNVIER 371 (457)
T ss_pred HHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 5555555555555555555554443
|
|
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.4e-08 Score=101.35 Aligned_cols=62 Identities=19% Similarity=0.306 Sum_probs=49.8
Q ss_pred Cc-cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------cEEEEec
Q 011305 208 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------TFFNISA 275 (489)
Q Consensus 208 ~~-dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-------~~i~v~~ 275 (489)
|+ +++|+++++.++.+.+..... +.....+.++|+||||||||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~------g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQ------GLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHh------cCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 66 899999999999888766442 11233467899999999999999999999965 8887765
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.9e-08 Score=94.56 Aligned_cols=94 Identities=23% Similarity=0.231 Sum_probs=61.7
Q ss_pred CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-------------CCcccHHHHhh
Q 011305 301 APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-------------PWELDAAMLRR 367 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-------------p~~Ld~al~rR 367 (489)
-|+||||||++.|.- +....|-..++ ..-.++ ||.+||+ |..+++.+++|
T Consensus 296 vPGVLFIDEVhMLDi-------------EcFTyL~kalE---S~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDR 358 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDI-------------ECFTYLHKALE---SPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDR 358 (456)
T ss_pred cCcceEeeehhhhhh-------------HHHHHHHHHhc---CCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhh
Confidence 478999999987732 23444545554 222334 5556664 45588999999
Q ss_pred cccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCc
Q 011305 368 LEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYS 412 (489)
Q Consensus 368 f~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~s 412 (489)
. .+|..-.++.++-++|++......++..+.+ ++.++.....-|
T Consensus 359 l-~Iirt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~ts 403 (456)
T KOG1942|consen 359 L-LIIRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTS 403 (456)
T ss_pred e-eEEeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchh
Confidence 9 6677777888888899999888777765443 555555443333
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-08 Score=109.70 Aligned_cols=212 Identities=19% Similarity=0.187 Sum_probs=128.0
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhcc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRG 284 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g 284 (489)
...++|.......+.+.+.... .....+++.|.+||||+++|+++.... +.+|+.++|..+.....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a----------~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~- 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLS----------RSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI- 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHh----------CcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH-
Confidence 3568888777777766554421 233679999999999999999999875 57999999987643211
Q ss_pred chHHHHHHHHH---------------HHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------
Q 011305 285 DSEKLIKVLFE---------------LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------- 342 (489)
Q Consensus 285 ~~~~~l~~lf~---------------~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------- 342 (489)
-..+|. ......+++|||||++.+... ++..|+..++.-.
T Consensus 202 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~ 263 (463)
T TIGR01818 202 -----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR 263 (463)
T ss_pred -----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC
Confidence 011111 011223589999999998654 3445665554221
Q ss_pred -cCCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHH----HHHHHHHhcCCCCCCCCCCHHHHHHHhcC
Q 011305 343 -QSDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEA----RRAMFESLLPSQTGEESLPYDLLVERTEG 410 (489)
Q Consensus 343 -~~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~e----R~~IL~~~l~~~~~~~~~dl~~La~~t~G 410 (489)
.....+.||++|+..- .+.+.+..|+.. +.+..|...+ ...++.+++...... ......+
T Consensus 264 ~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~-------~~~~~~~ 335 (463)
T TIGR01818 264 TPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNV-IRIHLPPLRERREDIPRLARHFLALAARE-------LDVEPKL 335 (463)
T ss_pred ceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCc-ceecCCCcccchhhHHHHHHHHHHHHHHH-------hCCCCCC
Confidence 1112356777776542 355677777742 4445554444 444555554322110 0011246
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 411 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 411 ~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
++...+..|.+.-|.++++.+.+.++..-..... ..|+.+|+...+
T Consensus 336 ~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~------~~i~~~~l~~~~ 381 (463)
T TIGR01818 336 LDPEALERLKQLRWPGNVRQLENLCRWLTVMASG------DEVLVSDLPAEL 381 (463)
T ss_pred cCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC------CcccHHhchHHH
Confidence 7888888888888888888887777665443222 236777775544
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.1e-09 Score=106.97 Aligned_cols=99 Identities=26% Similarity=0.496 Sum_probs=74.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh-hhhccc-hHHHHHHHHHHHH----hcCCcEEEEchhhhHHhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGD-SEKLIKVLFELAR----HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~-~~~~g~-~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~ 316 (489)
.+|||.||+|+|||+||+.+|+-+++||...+|..+. ..|+|+ .+..+..++..|. ..+.+|+||||+|.+...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 6899999999999999999999999999999999886 467775 5556666665542 234489999999999854
Q ss_pred hcccch-hhHHHHHHHHHHHHHhcCC
Q 011305 317 RGEARS-EHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 317 r~~~~~-~~~~~~~i~~~LL~~ldg~ 341 (489)
...-.. ..-..+-++..||..++|.
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 322111 1222345788999999865
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.7e-08 Score=100.50 Aligned_cols=126 Identities=20% Similarity=0.285 Sum_probs=75.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch-HHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
..+++|+||||||||+||.++++++ |..+++++..++........ .......+... ..+.+|+|||++.+....
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l--~~~dLLIIDDlg~~~~~~ 183 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKL--DKFDLLILDDLAYVTKDQ 183 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHH--hcCCEEEEeccccccCCH
Confidence 4689999999999999999999866 77888899888876542111 01122233322 345799999998764331
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc----------ccHHHHhhcc---cccccCCCCHHHHH
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----------LDAAMLRRLE---KRILVPLPDTEARR 383 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~----------Ld~al~rRf~---~~i~~~~Pd~~eR~ 383 (489)
. ....|++.++..... . .+|.|||.+.. +..++.+|+- ..+.+.-.|...+.
T Consensus 184 ~-----------~~~~Lf~lin~R~~~-~--s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R~~~ 248 (269)
T PRK08181 184 A-----------ETSVLFELISARYER-R--SILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYRRRT 248 (269)
T ss_pred H-----------HHHHHHHHHHHHHhC-C--CEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccchhHH
Confidence 1 122344444322222 2 25668887622 3356677763 33555555544433
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.4e-07 Score=96.42 Aligned_cols=237 Identities=18% Similarity=0.224 Sum_probs=146.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeccchhhh--
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSVVSK-- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v~~s~l~~~-- 281 (489)
..++|.+.-+..+++++..++. ...+.++.+.|-||||||.+..-+..... ...++++|.++...
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle--------~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLE--------LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhh--------cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 5789999999999999888664 34457899999999999999987766552 24588888764311
Q ss_pred --------h----cc-chHHHHHHHHHH-HHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 282 --------W----RG-DSEKLIKVLFEL-ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 282 --------~----~g-~~~~~l~~lf~~-A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
+ .+ .........|.. .... .+-|+++||+|.|....+. + |+..++.-.-.+.
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~----------v---Ly~lFewp~lp~s 288 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQT----------V---LYTLFEWPKLPNS 288 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccc----------e---eeeehhcccCCcc
Confidence 1 11 112222223322 2222 2568999999999854322 1 2233332344556
Q ss_pred cEEEEEEeCCCCcccHHHHh---hc---ccccccCCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHHH
Q 011305 347 LVFVLAATNLPWELDAAMLR---RL---EKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~r---Rf---~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d--l~~La~~t~G~sg~Di~~ 418 (489)
.+++|+.+|..+.-|..|-+ |. ...+.|++++.++..+|+...+.........+ ++-.|++..|.|| |++.
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SG-DlRk 367 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSG-DLRK 367 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCch-hHHH
Confidence 68888889987765543333 22 46789999999999999999998876654443 5667888888886 7765
Q ss_pred HH---HHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCCh
Q 011305 419 VS---KEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469 (489)
Q Consensus 419 l~---~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~ 469 (489)
++ +.|.-.+-........ ....+.+.-.....|..+++..+++++-.+.
T Consensus 368 aLdv~R~aiEI~E~e~r~~~~--~~l~~~~~p~~~~~v~~~~va~viSk~~~s~ 419 (529)
T KOG2227|consen 368 ALDVCRRAIEIAEIEKRKILD--DPLSPGTSPEKKKKVGVEHVAAVISKVDGSP 419 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccc--cCCCCCCCcccccccchHHHHHHhhhhccCh
Confidence 43 3333222111111100 0011111111114567889998888776543
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-08 Score=99.58 Aligned_cols=111 Identities=21% Similarity=0.272 Sum_probs=68.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch---HHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~---~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.+++|+|+||||||+|+.++|+++ +..++.++..++.....+.. ......++.... ...+|+|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~--~~dlLvIDDig~~~~- 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLS--NVDLLVIDEIGVQTE- 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhc--cCCEEEEeCCCCCCC-
Confidence 589999999999999999999988 78888998888875433211 111223333322 458999999977531
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc-----ccHHHHhhc
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE-----LDAAMLRRL 368 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~-----Ld~al~rRf 368 (489)
.+....++..+++. -.... ..+|.|||.... +...+.+|+
T Consensus 177 -------s~~~~~~l~~Ii~~---Ry~~~--~~tiitSNl~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 177 -------SRYEKVIINQIVDR---RSSSK--RPTGMLTNSNMEEMTKLLGERVMDRM 221 (244)
T ss_pred -------CHHHHHHHHHHHHH---HHhCC--CCEEEeCCCCHHHHHHHhChHHHHHH
Confidence 12223333334332 11112 235668887532 455566665
|
|
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.3e-09 Score=93.20 Aligned_cols=126 Identities=26% Similarity=0.376 Sum_probs=75.8
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccchhhhhccchHH
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKWRGDSEK 288 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l~~~~~g~~~~ 288 (489)
+|.....+++++.+.... ....+|+|+|++||||+++|++++...+ .+|+.++|..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a----------~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----------KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----------CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHHHHh----------CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 355556666666554432 2346899999999999999999999874 466777776543
Q ss_pred HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-CCc------cc
Q 011305 289 LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-PWE------LD 361 (489)
Q Consensus 289 ~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-p~~------Ld 361 (489)
..+++.+ .+++|||+|+|.+... .+..|+..++... ..+ +-+|+++.. +.. ++
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~-~~~-~RlI~ss~~~l~~l~~~~~~~ 121 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE-RSN-VRLIASSSQDLEELVEEGRFS 121 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT-TTT-SEEEEEECC-CCCHHHHSTHH
T ss_pred --HHHHHHc---CCCEEEECChHHCCHH-------------HHHHHHHHHHhcC-CCC-eEEEEEeCCCHHHHhhccchh
Confidence 2234443 5589999999998654 3445555555332 222 334555543 333 66
Q ss_pred HHHHhhcccccccCCC
Q 011305 362 AAMLRRLEKRILVPLP 377 (489)
Q Consensus 362 ~al~rRf~~~i~~~~P 377 (489)
+.+..|+.. +.+..|
T Consensus 122 ~~L~~~l~~-~~i~lP 136 (138)
T PF14532_consen 122 PDLYYRLSQ-LEIHLP 136 (138)
T ss_dssp HHHHHHCST-CEEEE-
T ss_pred HHHHHHhCC-CEEeCC
Confidence 777778743 344444
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.4e-08 Score=101.13 Aligned_cols=132 Identities=17% Similarity=0.205 Sum_probs=89.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC-------------------------cEEEEeccch---hhhh-ccchHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT-------------------------TFFNISASSV---VSKW-RGDSEKLI 290 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~-------------------------~~i~v~~s~l---~~~~-~g~~~~~l 290 (489)
..++.+||+||+|+|||++|+.+|+.+.. .++.++...- .++. ..-.-..+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 34578999999999999999999998732 1344433210 0000 00122345
Q ss_pred HHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh
Q 011305 291 KVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR 366 (489)
Q Consensus 291 ~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r 366 (489)
+.+.+.+.. ....|++||+++.+... ..+.+++.++... ..+.+|.+|++++.+.+.++|
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~---~~~~~Ilvth~~~~ll~ti~S 162 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP---PQVVFLLVSHAADKVLPTIKS 162 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc---CCCEEEEEeCChHhChHHHHH
Confidence 555555432 33469999999988533 4566788887542 235566688889999999999
Q ss_pred hcccccccCCCCHHHHHHHHHH
Q 011305 367 RLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 367 Rf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
|+ ..+.|+.|+.++....|..
T Consensus 163 Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 163 RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred Hh-hhhcCCCCCHHHHHHHHHh
Confidence 99 6689999999888877764
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=102.95 Aligned_cols=204 Identities=22% Similarity=0.244 Sum_probs=121.9
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
.+...|+.+++.....+.+.+..... ..-...+||.|.+||||-++|++..... ..||+.+||..+.
T Consensus 198 ~~~~~F~~~v~~S~~mk~~v~qA~k~----------AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lP 267 (511)
T COG3283 198 QDVSGFEQIVAVSPKMKHVVEQAQKL----------AMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLP 267 (511)
T ss_pred ccccchHHHhhccHHHHHHHHHHHHh----------hccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCc
Confidence 35567899999887777766544321 1122469999999999999999998866 7899999997765
Q ss_pred hhhc-----cch--HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC--------
Q 011305 280 SKWR-----GDS--EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------- 344 (489)
Q Consensus 280 ~~~~-----g~~--~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~-------- 344 (489)
.... |.. ..--..+|+.|.. +.+|+|||..+.+. ++..||..+..-+.+
T Consensus 268 e~~aEsElFG~apg~~gk~GffE~Ang---GTVlLDeIgEmSp~-------------lQaKLLRFL~DGtFRRVGee~Ev 331 (511)
T COG3283 268 EDAAESELFGHAPGDEGKKGFFEQANG---GTVLLDEIGEMSPR-------------LQAKLLRFLNDGTFRRVGEDHEV 331 (511)
T ss_pred hhHhHHHHhcCCCCCCCccchhhhccC---CeEEeehhhhcCHH-------------HHHHHHHHhcCCceeecCCcceE
Confidence 4321 111 1223456777665 78999999777544 556677776533211
Q ss_pred CCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 011305 345 DELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVERTEGYSG 413 (489)
Q Consensus 345 ~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~t~G~sg 413 (489)
.-.|-|||||..+- .+-..+.-|. ..+.+..|...+|.. +.+.++.... +++...-..++.
T Consensus 332 ~vdVRVIcatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s-------~elg~p~pkl~~ 403 (511)
T COG3283 332 HVDVRVICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFS-------DELGVPRPKLAA 403 (511)
T ss_pred EEEEEEEecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHH-------HHhCCCCCccCH
Confidence 12488999997652 1333444466 446667776666543 2222221110 001111223444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 414 SDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
.-+..+.+..|.+++|++.+.+-....
T Consensus 404 ~~~~~L~~y~WpGNVRqL~N~iyRA~s 430 (511)
T COG3283 404 DLLTVLTRYAWPGNVRQLKNAIYRALT 430 (511)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 455556666666666666655544433
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=4.3e-08 Score=100.38 Aligned_cols=112 Identities=22% Similarity=0.339 Sum_probs=68.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc---hHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD---SEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~---~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.+++|+||+|||||+||.++|+++ +..+++++..++....... ........+... ....+|+|||+......
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l--~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL--INCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh--ccCCEEEEeccCCCCCC
Confidence 789999999999999999999987 7889999988876644211 000111112222 23479999999765322
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-Cc----ccHHHHhhcc
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAMLRRLE 369 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p-~~----Ld~al~rRf~ 369 (489)
. .....|+..++........ +|.|||.+ .. +++++.+|+.
T Consensus 262 --------~---~~~~~Lf~iin~R~~~~k~--tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 262 --------E---FSKSELFNLINKRLLRQKK--MIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred --------H---HHHHHHHHHHHHHHHCCCC--EEEECCCCHHHHHHHHhHHHHHHHH
Confidence 1 1223344444433222222 45578765 22 4567778773
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.3e-07 Score=104.51 Aligned_cols=52 Identities=35% Similarity=0.551 Sum_probs=44.3
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..|+..|++++|++++++.|...+.. .++++|+||||||||++++++++.+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34667899999999999999876643 24799999999999999999999774
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.5e-07 Score=99.87 Aligned_cols=206 Identities=20% Similarity=0.291 Sum_probs=124.1
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~ 286 (489)
.++|.......+.+.+... ......++++|.+||||+++|+++.... +.||+.++|..+.....
T Consensus 140 ~lig~s~~~~~~~~~i~~~----------~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~--- 206 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALV----------APSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLL--- 206 (441)
T ss_pred ceEecCHHHHHHHHHHhhc----------cCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHH---
Confidence 4667666666665544331 2334689999999999999999998765 57999999987643211
Q ss_pred HHHHHHHHHH---------------HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------
Q 011305 287 EKLIKVLFEL---------------ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------- 343 (489)
Q Consensus 287 ~~~l~~lf~~---------------A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------- 343 (489)
-..+|.. .....+++|||||++.|... .+..|+..++.-..
T Consensus 207 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~~~ 270 (441)
T PRK10365 207 ---ESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSNQT 270 (441)
T ss_pred ---HHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCCce
Confidence 1111110 11223589999999999654 33455665543210
Q ss_pred CCCcEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHHH----HHHHhcCCCCCCCCCCHHHHHHH----h
Q 011305 344 SDELVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARRA----MFESLLPSQTGEESLPYDLLVER----T 408 (489)
Q Consensus 344 ~~~~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~~----IL~~~l~~~~~~~~~dl~~La~~----t 408 (489)
....+.+|++|+.+- .+.+.+..|+ ..+.+..|+..+|.+ ++..++.. ++.. .
T Consensus 271 ~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~Di~~l~~~~l~~-----------~~~~~~~~~ 338 (441)
T PRK10365 271 ISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRREDIPLLAGHFLQR-----------FAERNRKAV 338 (441)
T ss_pred eeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcchhHHHHHHHHHHH-----------HHHHhCCCC
Confidence 112355676765542 2444555566 346667777776654 33344322 2221 2
Q ss_pred cCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 409 EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
.++++..+..|....|.++++.+.+.++..-...+. ..|+.+|+...+
T Consensus 339 ~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~------~~i~~~~l~~~~ 386 (441)
T PRK10365 339 KGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTG------EYISERELPLAI 386 (441)
T ss_pred CCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC------CccchHhCchhh
Confidence 457888888888888888888888777764432221 236666665443
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.8e-08 Score=99.70 Aligned_cols=73 Identities=21% Similarity=0.283 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~-~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...+++|+||||||||++|.+++.++ |..++.+++.++....... ....+...+.. -..+.+|+|||++.+..
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~--l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVK--LGRYPLLIVDEVGYIPF 173 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHH--hccCCEEEEcccccCCC
Confidence 45789999999999999999999876 6777777777665443211 00111122222 23458999999987643
|
|
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5e-08 Score=109.87 Aligned_cols=164 Identities=18% Similarity=0.184 Sum_probs=95.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhc---------ccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-------CcEEE
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFT---------GLLSPWKGILLFGPPGTGKTMLAKAVATECK-------TTFFN 272 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~---------~~~~~~~~vLL~GppGtGKT~lAralA~el~-------~~~i~ 272 (489)
-.|.|.+.+|+.+.-.+.-......... .......+|||.|+||||||.+|+++++... .++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 4789999999998655533221110000 0123345899999999999999999998653 34444
Q ss_pred Eeccchhhhhccc--hHHHH-HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------
Q 011305 273 ISASSVVSKWRGD--SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------- 342 (489)
Q Consensus 273 v~~s~l~~~~~g~--~~~~l-~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------- 342 (489)
+.+..... ..+. .+..+ ...+.. ...++++|||+|.+... .+..|+..|+.-.
T Consensus 530 vgLTa~~~-~~d~~tG~~~le~GaLvl---AdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~KaG 592 (915)
T PTZ00111 530 VGLTASIK-FNESDNGRAMIQPGAVVL---ANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAKAG 592 (915)
T ss_pred ccccchhh-hcccccCcccccCCcEEE---cCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEecCC
Confidence 44433211 0000 00000 001111 12379999999998543 3455666664221
Q ss_pred ---cCCCcEEEEEEeCCCC-------------cccHHHHhhccccc-ccCCCCHHHHHHHHHHh
Q 011305 343 ---QSDELVFVLAATNLPW-------------ELDAAMLRRLEKRI-LVPLPDTEARRAMFESL 389 (489)
Q Consensus 343 ---~~~~~viVIatTn~p~-------------~Ld~al~rRf~~~i-~~~~Pd~~eR~~IL~~~ 389 (489)
.-+..+.||||+|... .+++++++||+.+. ....|+.+.=..|-++.
T Consensus 593 i~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI 656 (915)
T PTZ00111 593 IVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSI 656 (915)
T ss_pred cceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHH
Confidence 1234578899998642 27899999997654 45666666555554443
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.9e-07 Score=99.56 Aligned_cols=210 Identities=14% Similarity=0.142 Sum_probs=116.8
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec-
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA- 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~- 275 (489)
..+.+++.+.+.+||.-...-.++++.++...... ..+.+-+||+||||||||++++.+|++++..+.+-..
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~-------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np 79 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSG-------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINP 79 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhcc-------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCC
Confidence 34667788889999999988888888887653321 1233568899999999999999999999988776532
Q ss_pred cchh------hhhccchH------HH---HHHH-HHHHHh-----------cCCcEEEEchhhhHHhhhcccchhhHHHH
Q 011305 276 SSVV------SKWRGDSE------KL---IKVL-FELARH-----------HAPSTIFLDEIDAIISQRGEARSEHEASR 328 (489)
Q Consensus 276 s~l~------~~~~g~~~------~~---l~~l-f~~A~~-----------~~p~VL~IDEiD~l~~~r~~~~~~~~~~~ 328 (489)
..+. ..+.+... .. ...+ +..++. ..+.||+|||+-.+.... . .
T Consensus 80 ~~~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~------~---~ 150 (519)
T PF03215_consen 80 VSFRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD------T---S 150 (519)
T ss_pred CCccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchh------H---H
Confidence 2210 11111100 01 1111 111111 235799999997554321 1 2
Q ss_pred HHHHHHHHHhcCCccCCCcEEEEEE-eC------CCC--------cccHHHHhhc-ccccccCCCCHHHHHHHHHHhcCC
Q 011305 329 RLKTELLIQMDGLTQSDELVFVLAA-TN------LPW--------ELDAAMLRRL-EKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 329 ~i~~~LL~~ldg~~~~~~~viVIat-Tn------~p~--------~Ld~al~rRf-~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.+.+.|...+.. ....++++|.+ +. ... .+++.++... -..|.|-+-...--..-|...+..
T Consensus 151 ~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~ 228 (519)
T PF03215_consen 151 RFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKK 228 (519)
T ss_pred HHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHH
Confidence 333444444431 12214555555 11 111 3566666622 255677665555555555555433
Q ss_pred C-----C--CCCC-CC-HHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 393 Q-----T--GEES-LP-YDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 393 ~-----~--~~~~-~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
. + ...+ .+ ++.|+..+. +||+.++......+.
T Consensus 229 E~~~~~~~~~~p~~~~~l~~I~~~s~----GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 229 EARSSSGKNKVPDKQSVLDSIAESSN----GDIRSAINNLQFWCL 269 (519)
T ss_pred HhhhhcCCccCCChHHHHHHHHHhcC----chHHHHHHHHHHHhc
Confidence 3 1 1111 22 566666544 599888776665554
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=105.14 Aligned_cols=129 Identities=23% Similarity=0.294 Sum_probs=92.7
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV------ 279 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~------ 279 (489)
+.|+|++++...+.+++...... ..+. .+...+||.||.|+|||-+|+++|..+ .-.++.++++++.
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~g---l~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAG---LKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcc---cCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 35899999999999988663321 1111 356789999999999999999999988 5678999998633
Q ss_pred ---hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------CCCcE
Q 011305 280 ---SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 348 (489)
Q Consensus 280 ---~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~~~~v 348 (489)
..|+|..+ ...+.+..+....+||+|||||.-.+. +++.|++.+|.-.- .-.++
T Consensus 638 gsp~gyvG~e~--gg~LteavrrrP~sVVLfdeIEkAh~~-------------v~n~llq~lD~GrltDs~Gr~Vd~kN~ 702 (898)
T KOG1051|consen 638 GSPPGYVGKEE--GGQLTEAVKRRPYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRLTDSHGREVDFKNA 702 (898)
T ss_pred CCCcccccchh--HHHHHHHHhcCCceEEEEechhhcCHH-------------HHHHHHHHHhcCccccCCCcEeeccce
Confidence 22444433 345666777777899999999876433 66777777764321 22468
Q ss_pred EEEEEeCC
Q 011305 349 FVLAATNL 356 (489)
Q Consensus 349 iVIatTn~ 356 (489)
+||+|+|.
T Consensus 703 I~IMTsn~ 710 (898)
T KOG1051|consen 703 IFIMTSNV 710 (898)
T ss_pred EEEEeccc
Confidence 89999875
|
|
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.64 E-value=9.8e-08 Score=91.39 Aligned_cols=178 Identities=21% Similarity=0.286 Sum_probs=93.5
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEec-cchh----hhh-
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISA-SSVV----SKW- 282 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~-s~l~----~~~- 282 (489)
+|.+...+.|.+.+.. .+...++|+||.|+|||++++.+.+.+... .+++.. .... ...
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5666777777665533 234789999999999999999999988321 112211 0000 000
Q ss_pred -----------------------------ccchHHHHHHHHHHHHhc-CCcEEEEchhhhHH-hhhcccchhhHHHHHHH
Q 011305 283 -----------------------------RGDSEKLIKVLFELARHH-APSTIFLDEIDAII-SQRGEARSEHEASRRLK 331 (489)
Q Consensus 283 -----------------------------~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~-~~r~~~~~~~~~~~~i~ 331 (489)
.......+..++...... ...||+|||++.+. .... ...+.
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~--------~~~~~ 141 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE--------DKDFL 141 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT--------THHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc--------hHHHH
Confidence 011233445555555443 23799999999997 2111 12344
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcc------cHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC---CCCCHH
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWEL------DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE---ESLPYD 402 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~L------d~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~---~~~dl~ 402 (489)
..|...++.........+|++++.. ... ...+..|+.. +.+++.+.++..++++..+... .. .+.+++
T Consensus 142 ~~l~~~~~~~~~~~~~~~v~~~S~~-~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~ 218 (234)
T PF01637_consen 142 KSLRSLLDSLLSQQNVSIVITGSSD-SLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIE 218 (234)
T ss_dssp HHHHHHHHH----TTEEEEEEESSH-HHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHH
T ss_pred HHHHHHHhhccccCCceEEEECCch-HHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHH
Confidence 5566666543334444445544442 111 1234457766 9999999999999999987665 22 344567
Q ss_pred HHHHHhcCCc
Q 011305 403 LLVERTEGYS 412 (489)
Q Consensus 403 ~La~~t~G~s 412 (489)
.+...+.|..
T Consensus 219 ~i~~~~gG~P 228 (234)
T PF01637_consen 219 EIYSLTGGNP 228 (234)
T ss_dssp HHHHHHTT-H
T ss_pred HHHHHhCCCH
Confidence 7777777654
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-08 Score=94.51 Aligned_cols=72 Identities=28% Similarity=0.464 Sum_probs=48.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch-HHHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
....+++|+||||||||++|.++++++ |.++..++.+++........ .......+.... ...+|+|||+...
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~--~~dlLilDDlG~~ 120 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK--RVDLLILDDLGYE 120 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH--TSSCEEEETCTSS
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc--cccEeccccccee
Confidence 345799999999999999999999977 88899999988876543210 011222333333 3479999999643
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.63 E-value=1e-07 Score=84.18 Aligned_cols=69 Identities=29% Similarity=0.385 Sum_probs=48.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
+.++|+||+|+|||++++.+++.+. ..++++++.+.......... +...+.......+.+|||||++.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhhccCCcEEEEehhhhh
Confidence 5689999999999999999999886 88889988766432111111 222222222225689999999887
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.3e-07 Score=93.82 Aligned_cols=74 Identities=26% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc-hHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD-SEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~-~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
..+.+++|+||||||||+++.+++..+ |..+..+++.++....... ....+..++... ...+.+|+|||++...
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLP 177 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCC
Confidence 345789999999999999999998764 7788888877776443211 111233344332 2356899999997654
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.1e-07 Score=92.74 Aligned_cols=68 Identities=24% Similarity=0.355 Sum_probs=46.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
..+++|+||||+|||+|+.++|+++ +..+++++..++........ ......+.. -....+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~~--~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLNR--MKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHHH--hcCCCEEEEecccc
Confidence 4689999999999999999999986 56778888766654432111 111122222 23457999999943
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.3e-07 Score=99.59 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=85.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccch--HHHH--------HHHHHHHHhcCCcEEEEchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDS--EKLI--------KVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~--~~~l--------~~lf~~A~~~~p~VL~IDEi 310 (489)
.||+|.|++|||||+++++++.-+. .||..+..+--....+|.. +..+ ..++..|.. +||||||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~---GvL~lDe~ 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADG---GVLVLAMA 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccC---CEEEecCc
Confidence 6899999999999999999999884 5888776654444444432 1111 112223322 79999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCC---CcccHHHHhhcccccccCCC
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p---~~Ld~al~rRf~~~i~~~~P 377 (489)
..+.+ .+++.|++.|+.-. ..+..+++|++-|.. ..|++++++||+..+.++.|
T Consensus 103 n~~~~-------------~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~ 169 (584)
T PRK13406 103 ERLEP-------------GTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGL 169 (584)
T ss_pred ccCCH-------------HHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCC
Confidence 87743 47788888886321 123456677763321 34899999999999999988
Q ss_pred CHHH
Q 011305 378 DTEA 381 (489)
Q Consensus 378 d~~e 381 (489)
+..+
T Consensus 170 ~~~~ 173 (584)
T PRK13406 170 ALRD 173 (584)
T ss_pred ChHH
Confidence 7654
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.3e-07 Score=94.25 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=50.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchH-HHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~-~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
..+|++|+||+|||||+|+.++|+++ |.++..++.+++......... ......+... ....+|+|||+..-
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l--~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAV--KEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHh--cCCCEEEEecCCCc
Confidence 35799999999999999999999998 788888888877654332110 1122333332 23479999999653
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.1e-07 Score=89.37 Aligned_cols=72 Identities=26% Similarity=0.419 Sum_probs=51.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHH-HH-HHHHHHHHhcCCcEEEEchhhhHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEK-LI-KVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~-~l-~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
.+.+++|+||||||||+||-|+++++ |.+++.++.++++......... .. ..+.... ....+|+|||+....
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l--~~~dlLIiDDlG~~~ 180 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLREL--KKVDLLIIDDIGYEP 180 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHh--hcCCEEEEecccCcc
Confidence 45799999999999999999999988 7889999999887654322111 11 1112212 234799999996653
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.9e-06 Score=82.39 Aligned_cols=93 Identities=17% Similarity=0.104 Sum_probs=63.2
Q ss_pred CCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 357 PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 357 p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
|..++-.+++|. .+|...+++.++...||+..+......-+.+ ++.|......-+-+.--.|+..|...+.+|..
T Consensus 339 phGiP~D~lDR~-lII~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~--- 414 (454)
T KOG2680|consen 339 PHGIPIDLLDRM-LIISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG--- 414 (454)
T ss_pred CCCCcHHHhhhh-heeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC---
Confidence 456888999998 6688888899999999999987776654443 34444444444444445566666666655521
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
..+..+|++.+..-+-..
T Consensus 415 ---------------~~v~~~di~r~y~LFlD~ 432 (454)
T KOG2680|consen 415 ---------------KVVEVDDIERVYRLFLDE 432 (454)
T ss_pred ---------------ceeehhHHHHHHHHHhhh
Confidence 237889999988766544
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.4e-06 Score=84.01 Aligned_cols=170 Identities=12% Similarity=0.054 Sum_probs=99.9
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE--------EEec--------cc
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF--------NISA--------SS 277 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i--------~v~~--------s~ 277 (489)
+..+++.++..+.. ...++.+||+|| +||+++|+.+|+.+-..-- .-+| ++
T Consensus 7 q~~~~~~L~~~~~~-----------~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILEQ-----------DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHHc-----------CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34555666655533 234578999996 6899999999997722100 0000 11
Q ss_pred hhhhhc-c--chHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 278 VVSKWR-G--DSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 278 l~~~~~-g--~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+.--.. | -.-..++.+...+. .....|++||++|.+... ..|.||+.++ .++..+++
T Consensus 74 ~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE---EPp~~t~~ 137 (290)
T PRK07276 74 VTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE---EPQSEIYI 137 (290)
T ss_pred eeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc---CCCCCeEE
Confidence 100000 1 11234444444333 223469999999998533 4678999987 34455777
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
|.+|++++.+-|.++||+ ..+.|+. +.++..+++.. .+.. .+...++....| +++....+.+
T Consensus 138 iL~t~~~~~lLpTI~SRc-q~i~f~~-~~~~~~~~L~~----~g~~--~~~a~~la~~~~-s~~~A~~l~~ 199 (290)
T PRK07276 138 FLLTNDENKVLPTIKSRT-QIFHFPK-NEAYLIQLLEQ----KGLL--KTQAELLAKLAQ-STSEAEKLAQ 199 (290)
T ss_pred EEEECChhhCchHHHHcc-eeeeCCC-cHHHHHHHHHH----cCCC--hHHHHHHHHHCC-CHHHHHHHhC
Confidence 888888999999999999 5577866 55555555542 2222 222334444555 5555555553
|
|
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-06 Score=87.61 Aligned_cols=118 Identities=13% Similarity=0.139 Sum_probs=78.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------EEEEeccchhhhhccchHHHHHHHHHHHH----h
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------FFNISASSVVSKWRGDSEKLIKVLFELAR----H 299 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~----------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~ 299 (489)
.-++.+||+||+|+||+.+|.++|+.+-+. ++.+.... .+.. -.-..++.+..... .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~--I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRL--HSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCc--CcHHHHHHHHHHHhhCccC
Confidence 345789999999999999999999987431 22221110 0000 01223444443332 2
Q ss_pred cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCC
Q 011305 300 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~P 377 (489)
....|++||++|.+... ..+.||+.++ .++..+++|..|+.++.+.+.++||+ ..+.|+.+
T Consensus 94 ~~~kv~ii~~ad~mt~~-------------AaNaLLK~LE---EPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 94 SPYKIYIIHEADRMTLD-------------AISAFLKVLE---DPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred CCceEEEEechhhcCHH-------------HHHHHHHHhh---cCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccch
Confidence 33469999999998543 5678999987 34556778888899999999999999 44666654
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.5e-06 Score=76.24 Aligned_cols=73 Identities=23% Similarity=0.413 Sum_probs=48.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEeccchhhh--------------hc--cchHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISASSVVSK--------------WR--GDSEKLIKVLFELA 297 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~s~l~~~--------------~~--g~~~~~l~~lf~~A 297 (489)
.+.++++||||+|||++++.+++.+ ..+++.+++...... .. .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3679999999999999999999988 778888877543310 00 12333444455555
Q ss_pred HhcCCcEEEEchhhhHH
Q 011305 298 RHHAPSTIFLDEIDAII 314 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l~ 314 (489)
......+|+|||+|.+.
T Consensus 84 ~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHCTEEEEEEETTHHHH
T ss_pred HhcCCeEEEEeChHhcC
Confidence 55554599999999975
|
|
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.3e-06 Score=84.25 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=78.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------------------EEEEeccchhhhhccchHHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------FFNISASSVVSKWRGDSEKLIKVLFELA 297 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~----------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A 297 (489)
.+++.+||+||+|+||..+|.++|+.+-+. ++.+.... .. -....++.+.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-~~----I~id~ir~l~~~l 79 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-NP----IKKEDALSIINKL 79 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-cc----CCHHHHHHHHHHH
Confidence 467889999999999999999999977211 11111110 00 1122233333322
Q ss_pred H----h-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 298 R----H-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 298 ~----~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
. . ....|++|+++|.+... ..+.||+.++ .++..+++|..|+.++.+.+.++||+.. +
T Consensus 80 ~~~s~e~~~~KV~II~~ae~m~~~-------------AaNaLLK~LE---EPp~~t~fiLit~~~~~lLpTI~SRCq~-~ 142 (261)
T PRK05818 80 NRPSVESNGKKIYIIYGIEKLNKQ-------------SANSLLKLIE---EPPKNTYGIFTTRNENNILNTILSRCVQ-Y 142 (261)
T ss_pred ccCchhcCCCEEEEeccHhhhCHH-------------HHHHHHHhhc---CCCCCeEEEEEECChHhCchHhhhheee-e
Confidence 1 1 23579999999998533 5688999987 3555677888999999999999999944 6
Q ss_pred ccCCC
Q 011305 373 LVPLP 377 (489)
Q Consensus 373 ~~~~P 377 (489)
.++.+
T Consensus 143 ~~~~~ 147 (261)
T PRK05818 143 VVLSK 147 (261)
T ss_pred ecCCh
Confidence 66665
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.2e-05 Score=81.33 Aligned_cols=125 Identities=13% Similarity=0.043 Sum_probs=85.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----------c--EEEEeccchhhhhccchHHHHHHHHHHHHh-----cCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT-----------T--FFNISASSVVSKWRGDSEKLIKVLFELARH-----HAPS 303 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~-----------~--~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~-----~~p~ 303 (489)
.+.+||+|+.|.||+.+|+.+++.+-+ | +..++.. +.. -.-..++.+.+.... ....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~--i~vd~Ir~l~~~~~~~~~~~~~~K 92 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKD--LSKSEFLSAINKLYFSSFVQSQKK 92 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCc--CCHHHHHHHHHHhccCCcccCCce
Confidence 367889999999999999999998722 1 2222200 010 111234444433321 2457
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHH
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARR 383 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~ 383 (489)
|++||++|.+.. ...+.|+..++. .++.+++|..|+.++.+-+.++||+ ..+.|+.|+.++..
T Consensus 93 vvII~~~e~m~~-------------~a~NaLLK~LEE---Pp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~ 155 (299)
T PRK07132 93 ILIIKNIEKTSN-------------SLLNALLKTIEE---PPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKIL 155 (299)
T ss_pred EEEEecccccCH-------------HHHHHHHHHhhC---CCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHH
Confidence 999999987742 245789998873 4445667777778899999999999 66999999988887
Q ss_pred HHHHH
Q 011305 384 AMFES 388 (489)
Q Consensus 384 ~IL~~ 388 (489)
..+..
T Consensus 156 ~~l~~ 160 (299)
T PRK07132 156 AKLLS 160 (299)
T ss_pred HHHHH
Confidence 76664
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.8e-06 Score=75.43 Aligned_cols=140 Identities=20% Similarity=0.251 Sum_probs=74.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC--------Cc-EEEEeccchhhhh------------ccchHHHHHH-HHHHHHhcC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK--------TT-FFNISASSVVSKW------------RGDSEKLIKV-LFELARHHA 301 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~--------~~-~i~v~~s~l~~~~------------~g~~~~~l~~-lf~~A~~~~ 301 (489)
-++|+|+||+|||++++.++..+. .+ .+.+.+.+..... .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999998771 11 2333333322110 0011111111 112233445
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcc--cccccCCCCH
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE--KRILVPLPDT 379 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~--~~i~~~~Pd~ 379 (489)
..+|+||.+|.+...... .. .......+...+......+ +-++.|+. +..... +.+.+. ..+.++..+.
T Consensus 82 ~~llilDglDE~~~~~~~--~~---~~~~~~~l~~l~~~~~~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--QE---RQRLLDLLSQLLPQALPPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSE 152 (166)
T ss_pred ceEEEEechHhcccchhh--hH---HHHHHHHHHHHhhhccCCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCH
Confidence 579999999999764321 00 1112222323333211122 33333443 333322 444443 3478888899
Q ss_pred HHHHHHHHHhcCC
Q 011305 380 EARRAMFESLLPS 392 (489)
Q Consensus 380 ~eR~~IL~~~l~~ 392 (489)
++..++++.+++.
T Consensus 153 ~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 153 EDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999988754
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.8e-06 Score=86.42 Aligned_cols=136 Identities=24% Similarity=0.370 Sum_probs=76.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeccchhhhhccchHHHHHHHHHHHH-----------hcCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKWRGDSEKLIKVLFELAR-----------HHAPSTIF 306 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s~l~~~~~g~~~~~l~~lf~~A~-----------~~~p~VL~ 306 (489)
..+++||.||+|||||++++..-+.+... ...++++.. .+...++.+.+... ..+..|+|
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~f 105 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLF 105 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEE
T ss_pred cCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEE
Confidence 35789999999999999999988776432 223444322 12223333222110 11235999
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHH-hc--CCccC-------CCcEEEEEEeCCCC---cccHHHHhhcccccc
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQ-MD--GLTQS-------DELVFVLAATNLPW---ELDAAMLRRLEKRIL 373 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~-ld--g~~~~-------~~~viVIatTn~p~---~Ld~al~rRf~~~i~ 373 (489)
|||++.-.++.-.. .... +||.+ ++ |.-.. -..+.++++++.+. .+++++.|.| ..+.
T Consensus 106 iDDlN~p~~d~ygt-------q~~i-ElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f-~i~~ 176 (272)
T PF12775_consen 106 IDDLNMPQPDKYGT-------QPPI-ELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF-NILN 176 (272)
T ss_dssp EETTT-S---TTS---------HHH-HHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE-EEEE
T ss_pred ecccCCCCCCCCCC-------cCHH-HHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe-EEEE
Confidence 99998766553221 1122 33333 22 21111 12477888887543 3888999988 6799
Q ss_pred cCCCCHHHHHHHHHHhcC
Q 011305 374 VPLPDTEARRAMFESLLP 391 (489)
Q Consensus 374 ~~~Pd~~eR~~IL~~~l~ 391 (489)
++.|+.++...|+..++.
T Consensus 177 ~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp ----TCCHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHh
Confidence 999999998888777664
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.1e-06 Score=81.07 Aligned_cols=130 Identities=15% Similarity=0.149 Sum_probs=74.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
.+-.++||+|||||.+++.+|+.+|.+++.++|++..+ ...+..++.-+.... +.+++||++.+..+.-+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~~~G-aW~cfdefnrl~~~vLS--- 102 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLAQSG-AWLCFDEFNRLSEEVLS--- 102 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHHHHT--EEEEETCCCSSHHHHH---
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHhhcC-chhhhhhhhhhhHHHHH---
Confidence 56788999999999999999999999999999987543 345666665555543 89999999988543110
Q ss_pred hhHHHHHHHHHHHHHhcCCcc----------CCCcEEEEEEeCCC----CcccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 323 EHEASRRLKTELLIQMDGLTQ----------SDELVFVLAATNLP----WELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~ldg~~~----------~~~~viVIatTn~p----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
... +.+..+...+..-.. -+...-++.|.|.. ..+++.++.-| +.+.+..||.....+++
T Consensus 103 --~i~-~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 103 --VIS-QQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp --HHH-HHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred --HHH-HHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHH
Confidence 000 111122222211110 11223455566633 45888888877 77899999976655543
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=85.24 Aligned_cols=72 Identities=19% Similarity=0.159 Sum_probs=49.2
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+.+++.+.+.++|.=...-..++++++..... +. .....+-+||+||+||||||.++.+++++|..+++-+
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~----~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAE----FT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHH----hc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 345556667777876666655666665541110 01 1123356899999999999999999999999888765
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.3e-06 Score=88.32 Aligned_cols=164 Identities=25% Similarity=0.256 Sum_probs=85.8
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--cchhh--hhc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVS--KWR 283 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--s~l~~--~~~ 283 (489)
+|.|++++|+.|.-.+.--. ..-+... ....-+|||+|.||||||.+.+.+++-+-.-.+. ++ +.-++ .|+
T Consensus 430 sIye~edvKkglLLqLfGGt--~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yT-SGkGsSavGLTayV 506 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGGT--RKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYT-SGKGSSAVGLTAYV 506 (804)
T ss_pred hhhcccchhhhHHHHHhcCC--cccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceee-cCCccchhcceeeE
Confidence 68889999998874432211 1111111 2333689999999999999999999977433221 11 11000 000
Q ss_pred ---cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH------hcCC-ccCCCcEEEEEE
Q 011305 284 ---GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ------MDGL-TQSDELVFVLAA 353 (489)
Q Consensus 284 ---g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~------ldg~-~~~~~~viVIat 353 (489)
+++...+-+--.. -....+|.+|||+|.+..... .++.+.+++ --|+ ..-+...-|+|+
T Consensus 507 trd~dtkqlVLesGAL-VLSD~GiCCIDEFDKM~dStr----------SvLhEvMEQQTvSIAKAGII~sLNAR~SVLAa 575 (804)
T KOG0478|consen 507 TKDPDTRQLVLESGAL-VLSDNGICCIDEFDKMSDSTR----------SVLHEVMEQQTLSIAKAGIIASLNARCSVLAA 575 (804)
T ss_pred EecCccceeeeecCcE-EEcCCceEEchhhhhhhHHHH----------HHHHHHHHHhhhhHhhcceeeeccccceeeee
Confidence 0011100000000 012247999999999943321 122211111 1122 223445668888
Q ss_pred eCCCC-------------cccHHHHhhcccccc-cCCCCHHHHHHHHH
Q 011305 354 TNLPW-------------ELDAAMLRRLEKRIL-VPLPDTEARRAMFE 387 (489)
Q Consensus 354 Tn~p~-------------~Ld~al~rRf~~~i~-~~~Pd~~eR~~IL~ 387 (489)
+|... .|++.|+|||+.++- +..||+..-+.|-.
T Consensus 576 ANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~ 623 (804)
T KOG0478|consen 576 ANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLAD 623 (804)
T ss_pred eccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHH
Confidence 88432 278999999986553 45566553333333
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.1e-05 Score=72.63 Aligned_cols=72 Identities=25% Similarity=0.410 Sum_probs=49.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----------------------c--cchHHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------R--GDSEKLIKVLFELA 297 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----------------------~--g~~~~~l~~lf~~A 297 (489)
++|+||||+|||+++..++... +.+++.++........ . .............+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999999887 5677777664332210 0 01111122334555
Q ss_pred HhcCCcEEEEchhhhHHhh
Q 011305 298 RHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l~~~ 316 (489)
....|.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6677899999999998754
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.25 E-value=7e-06 Score=82.63 Aligned_cols=163 Identities=21% Similarity=0.294 Sum_probs=103.4
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHH---HhCCcEEEEeccchh-----
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT---ECKTTFFNISASSVV----- 279 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~---el~~~~i~v~~s~l~----- 279 (489)
-..+.|..+..+.+.+++.....+. ....|++.||.|+|||++.-..-. +.|-+++.|......
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~g--------EsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~ 94 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHG--------ESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKI 94 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhc--------CCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHH
Confidence 3467888888888888776644322 347899999999999998765533 557777766543221
Q ss_pred ----------------hhhccchHHHHHHHHHHHHh----cCCcEEE-EchhhhHHhhhcccchhhHHHHHHHHHHHHHh
Q 011305 280 ----------------SKWRGDSEKLIKVLFELARH----HAPSTIF-LDEIDAIISQRGEARSEHEASRRLKTELLIQM 338 (489)
Q Consensus 280 ----------------~~~~g~~~~~l~~lf~~A~~----~~p~VL~-IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~l 338 (489)
.+..|.....+..+....+. .+..|+| +||+|..++.. + +.-+++.+
T Consensus 95 al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~----------r--QtllYnlf 162 (408)
T KOG2228|consen 95 ALKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHS----------R--QTLLYNLF 162 (408)
T ss_pred HHHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccch----------h--hHHHHHHH
Confidence 11123333333333333222 1222555 57999987652 1 12355566
Q ss_pred cCCccCCCcEEEEEEeCCCCc---ccHHHHhhcccc-cccCCC-CHHHHHHHHHHhc
Q 011305 339 DGLTQSDELVFVLAATNLPWE---LDAAMLRRLEKR-ILVPLP-DTEARRAMFESLL 390 (489)
Q Consensus 339 dg~~~~~~~viVIatTn~p~~---Ld~al~rRf~~~-i~~~~P-d~~eR~~IL~~~l 390 (489)
|-......++.||+.|.+.+. |.+.+.+||.+. |+++.+ +..+-..+++..+
T Consensus 163 Disqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 163 DISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 644555667888988877754 678999999766 555543 7788888888877
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.1e-05 Score=86.83 Aligned_cols=164 Identities=20% Similarity=0.193 Sum_probs=96.6
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe-c-----------
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS-A----------- 275 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~-~----------- 275 (489)
+..|.|.+.+|.-+.-.+.--......-.-.++..-+|++.|.||||||.+.++++.-+-..+|.-. +
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 6689999999999875543322211111111344468999999999999999999987754433211 1
Q ss_pred -cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cC
Q 011305 276 -SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QS 344 (489)
Q Consensus 276 -s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~ 344 (489)
.+-.+.|.-+.. .+-.| ..+|.+|||+|.+..+. ..++...|+.-. .-
T Consensus 424 kD~esgdf~iEAG-----ALmLA---DnGICCIDEFDKMd~~d-------------qvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 424 KDEESGDFTIEAG-----ALMLA---DNGICCIDEFDKMDVKD-------------QVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred ecCCCCceeeecC-----cEEEc---cCceEEechhcccChHh-------------HHHHHHHHHhheehheecceEEee
Confidence 111111110000 01111 23799999999985431 123444443111 11
Q ss_pred CCcEEEEEEeCCCC-------------cccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCC
Q 011305 345 DELVFVLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 345 ~~~viVIatTn~p~-------------~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
+.+.-|||++|... .++++++|||+. .|.+..|++..-..|-++.+..
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 23455788887652 278999999985 4566778887777776666543
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.5e-05 Score=77.92 Aligned_cols=156 Identities=19% Similarity=0.112 Sum_probs=81.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH--hCCc---EEEEeccchh----------hh---h------ccchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE--CKTT---FFNISASSVV----------SK---W------RGDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e--l~~~---~i~v~~s~l~----------~~---~------~g~~~~~l~~lf~~ 296 (489)
..+.|.|+|++|+|||++|+.+++. .... .+.++.+.-. .. . ....+.....+. .
T Consensus 18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~-~ 96 (287)
T PF00931_consen 18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLR-E 96 (287)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHH-H
T ss_pred CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccch-h
Confidence 4467899999999999999999987 4322 2333332110 00 0 011223333333 3
Q ss_pred HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCC
Q 011305 297 ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 297 A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~ 376 (489)
.....+++|+||+++... ....+...+. ....+.-||.||...... ...... ...+.++.
T Consensus 97 ~L~~~~~LlVlDdv~~~~---------------~~~~l~~~~~---~~~~~~kilvTTR~~~v~-~~~~~~-~~~~~l~~ 156 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE---------------DLEELREPLP---SFSSGSKILVTTRDRSVA-GSLGGT-DKVIELEP 156 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH---------------HH-------H---CHHSS-EEEEEESCGGGG-TTHHSC-EEEEECSS
T ss_pred hhccccceeeeeeecccc---------------cccccccccc---cccccccccccccccccc-cccccc-cccccccc
Confidence 334457999999997542 1111222221 111123456677654322 122111 46788889
Q ss_pred CCHHHHHHHHHHhcCCCC----CCCCCCHHHHHHHhcCCcHHHHHH
Q 011305 377 PDTEARRAMFESLLPSQT----GEESLPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~~~~----~~~~~dl~~La~~t~G~sg~Di~~ 418 (489)
.+.++-.+++........ .........+++.+.|. |-.|..
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~gl-PLal~~ 201 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGL-PLALKL 201 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence 999999999999876554 11222356788887764 334433
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.14 E-value=7.3e-06 Score=90.50 Aligned_cols=164 Identities=24% Similarity=0.272 Sum_probs=91.4
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcc--cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE-eccchhhhhcc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI-SASSVVSKWRG 284 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v-~~s~l~~~~~g 284 (489)
.-.|.|++.+|+.+.-.+.-.. +..... .....-||||.|.||||||.|.+.+++.+-..++.- .++.- +|
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv--~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~----~G 358 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGV--KKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSA----AG 358 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCC--cccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccc----cC
Confidence 4579999999999875443322 111111 123346899999999999999999999874443321 11111 01
Q ss_pred chHHHHHH-----HHHHHH---hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC----c------cCCC
Q 011305 285 DSEKLIKV-----LFELAR---HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL----T------QSDE 346 (489)
Q Consensus 285 ~~~~~l~~-----lf~~A~---~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~----~------~~~~ 346 (489)
-++..++. +.-.+- -..++|.+|||+|.+... -...+...|+.- . .-+.
T Consensus 359 LTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnA 425 (682)
T COG1241 359 LTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNA 425 (682)
T ss_pred ceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecch
Confidence 11100000 000110 123589999999987432 123344444311 1 1123
Q ss_pred cEEEEEEeCCCC-------------cccHHHHhhcccccccCC-CCHHHHHHHHHHhc
Q 011305 347 LVFVLAATNLPW-------------ELDAAMLRRLEKRILVPL-PDTEARRAMFESLL 390 (489)
Q Consensus 347 ~viVIatTn~p~-------------~Ld~al~rRf~~~i~~~~-Pd~~eR~~IL~~~l 390 (489)
..-|+||+|... .++++++|||+..+.+.. |+.+.-..+.++.+
T Consensus 426 RcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil 483 (682)
T COG1241 426 RCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHIL 483 (682)
T ss_pred hhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHH
Confidence 455777887664 278899999998766544 65554444444443
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=83.11 Aligned_cols=204 Identities=21% Similarity=0.228 Sum_probs=110.8
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~ 286 (489)
-+|.|.+++|+.|.-+++-..... ...+ ....-+|+|.|.||+.||.|.+.+.+-.-...|..... +..+|-+
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~--~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLT 416 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKS--PGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLT 416 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCC--CCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccc
Confidence 379999999999987665532111 1011 23335799999999999999999998775555443221 1123333
Q ss_pred HHHHHHH-----------HHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-ccCCCcEEEEEEe
Q 011305 287 EKLIKVL-----------FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 354 (489)
Q Consensus 287 ~~~l~~l-----------f~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-~~~~~~viVIatT 354 (489)
+..++.- +-.| ..+|.+|||+|.+..... ..-|++.++..-.+ .=-|+ +.-+.+..|++++
T Consensus 417 AAVmkDpvTgEM~LEGGALVLA---D~GICCIDEfDKM~e~DR--tAIHEVMEQQTISI--aKAGI~TtLNAR~sILaAA 489 (721)
T KOG0482|consen 417 AAVMKDPVTGEMVLEGGALVLA---DGGICCIDEFDKMDESDR--TAIHEVMEQQTISI--AKAGINTTLNARTSILAAA 489 (721)
T ss_pred hhhhcCCCCCeeEeccceEEEc---cCceEeehhhhhhhhhhh--HHHHHHHHhhhhhh--hhhccccchhhhHHhhhhc
Confidence 3322210 0111 237999999999965411 11122211100000 00122 1223446678888
Q ss_pred CCCC-------------cccHHHHhhccccccc-CCCCHHHHHHHHHHhcC--CCCCCC-----CCCHHH------HHHH
Q 011305 355 NLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLP--SQTGEE-----SLPYDL------LVER 407 (489)
Q Consensus 355 n~p~-------------~Ld~al~rRf~~~i~~-~~Pd~~eR~~IL~~~l~--~~~~~~-----~~dl~~------La~~ 407 (489)
|..+ .|+.||+|||+..+.+ ..||.+.-..+-++..- .+..++ .++.+. +++.
T Consensus 490 NPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~mR~yI~~ak~ 569 (721)
T KOG0482|consen 490 NPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNLMRRYISLAKR 569 (721)
T ss_pred CccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 7653 2889999999876655 45766665555555431 111111 133222 4455
Q ss_pred hcCCcHHHHHHHHHHHH
Q 011305 408 TEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 408 t~G~sg~Di~~l~~~A~ 424 (489)
..-..+.++..-+..|.
T Consensus 570 ~~P~vp~~l~dyi~~AY 586 (721)
T KOG0482|consen 570 KNPVVPEALADYITGAY 586 (721)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 55566666665554444
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.8e-06 Score=84.92 Aligned_cols=103 Identities=19% Similarity=0.232 Sum_probs=58.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC-cEEEEeccchhhhhccch------HHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT-TFFNISASSVVSKWRGDS------EKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~-~~i~v~~s~l~~~~~g~~------~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..+++|++||||+|+|||+|+-.+.+.+.. .--.+.-.+++....... ..-+..+.+... ....+|++||++
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~-~~~~lLcfDEF~ 137 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELA-KESRLLCFDEFQ 137 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHH-hcCCEEEEeeee
Confidence 356799999999999999999999998743 222222222222111000 011122222222 222599999996
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 312 AIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 312 ~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.-- -....++..|+..+- ..++++|+|+|.+
T Consensus 138 V~D----------iaDAmil~rLf~~l~-----~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VTD----------IADAMILKRLFEALF-----KRGVVLVATSNRP 168 (362)
T ss_pred ccc----------hhHHHHHHHHHHHHH-----HCCCEEEecCCCC
Confidence 531 112345555655542 2347889999987
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=85.66 Aligned_cols=170 Identities=23% Similarity=0.295 Sum_probs=93.4
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------------
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------------ 277 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------------ 277 (489)
.|.|++.+|..+.-.+.--..+..--...+...-+|||+|.||||||.+.|.+++-....++...-..
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 68999999999886554322211111111334467999999999999999999998766555432111
Q ss_pred -hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHH-----HHHHHHHhcCCccCCCcEEEE
Q 011305 278 -VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-----KTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 278 -l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-----~~~LL~~ldg~~~~~~~viVI 351 (489)
+...|.-+.. .+-.| ..+|.+|||+|.+..... .+-|++..+. ...+...+. ....||
T Consensus 530 PvtrEWTLEaG-----ALVLA---DkGvClIDEFDKMndqDR--tSIHEAMEQQSISISKAGIVtsLq------ArctvI 593 (854)
T KOG0477|consen 530 PVTREWTLEAG-----ALVLA---DKGVCLIDEFDKMNDQDR--TSIHEAMEQQSISISKAGIVTSLQ------ARCTVI 593 (854)
T ss_pred CccceeeeccC-----eEEEc---cCceEEeehhhhhccccc--chHHHHHHhcchhhhhhhHHHHHH------hhhhhh
Confidence 0111110000 01112 237999999999865421 1222222210 112333332 224578
Q ss_pred EEeCCC---C----------cccHHHHhhcccccccCC---CCHHH--HHHHHHHhcCCCCC
Q 011305 352 AATNLP---W----------ELDAAMLRRLEKRILVPL---PDTEA--RRAMFESLLPSQTG 395 (489)
Q Consensus 352 atTn~p---~----------~Ld~al~rRf~~~i~~~~---Pd~~e--R~~IL~~~l~~~~~ 395 (489)
+|+|.. . .|...+++||+....+.. |-.++ ..-++..+.+.++.
T Consensus 594 AAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~ 655 (854)
T KOG0477|consen 594 AAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPS 655 (854)
T ss_pred eecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCc
Confidence 888762 1 366789999987665544 33333 33455556554443
|
|
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.1e-07 Score=92.27 Aligned_cols=162 Identities=27% Similarity=0.303 Sum_probs=82.1
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc-----h-----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS-----V----- 278 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~-----l----- 278 (489)
..|.|.+.+|..+.-.+.........-....+..-|+||.|.||||||.+.+.+++-....+ ++++.. +
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceec
Confidence 36889888888776333222211100000123346899999999999999998876554333 333221 1
Q ss_pred ----hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cC
Q 011305 279 ----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QS 344 (489)
Q Consensus 279 ----~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~ 344 (489)
.+.|.-+. ..+-.| ..+|++|||+|.+... ....|+..|+.-. .-
T Consensus 103 ~d~~~~~~~lea-----Galvla---d~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l 161 (331)
T PF00493_consen 103 RDPVTGEWVLEA-----GALVLA---DGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTL 161 (331)
T ss_dssp CCGGTSSECEEE------HHHHC---TTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEE
T ss_pred cccccceeEEeC-----Cchhcc---cCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccc
Confidence 11111111 112222 2389999999998542 2345666665321 11
Q ss_pred CCcEEEEEEeCCCC-------------cccHHHHhhccccccc-CCCCHHHHHHHHHHhcCC
Q 011305 345 DELVFVLAATNLPW-------------ELDAAMLRRLEKRILV-PLPDTEARRAMFESLLPS 392 (489)
Q Consensus 345 ~~~viVIatTn~p~-------------~Ld~al~rRf~~~i~~-~~Pd~~eR~~IL~~~l~~ 392 (489)
+...-|++++|... .+++.+++||+..+.+ ..|+.+.-..+.++.+..
T Consensus 162 ~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 162 NARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp E---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred cchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 23466888888654 2778999999988765 446655555565655543
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.8e-05 Score=74.60 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=64.2
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE-----ec--cc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI-----SA--SS 277 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v-----~~--s~ 277 (489)
.|.|+.-+++.+...+..++.++. -..|-.+=|||++||||..+++.||+.+ ..+++.. +. ..
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~ 157 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHAS 157 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChH
Confidence 588999999999888888776553 1233455689999999999999999977 2232211 11 11
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
-...|..+.. ..+...++..+.++.++||+|.|.+.
T Consensus 158 ~ie~Yk~eL~---~~v~~~v~~C~rslFIFDE~DKmp~g 193 (344)
T KOG2170|consen 158 KIEDYKEELK---NRVRGTVQACQRSLFIFDEVDKLPPG 193 (344)
T ss_pred HHHHHHHHHH---HHHHHHHHhcCCceEEechhhhcCHh
Confidence 1122322222 23334445566689999999999654
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.06 E-value=6.8e-05 Score=89.25 Aligned_cols=177 Identities=18% Similarity=0.230 Sum_probs=96.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE---EEEeccch--
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF---FNISASSV-- 278 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~---i~v~~s~l-- 278 (489)
+...+++++|.+...+++.+.+... ....+-+-|+|++|+||||+|+++++.+..+| +.++...+
T Consensus 179 ~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~ 248 (1153)
T PLN03210 179 PSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISK 248 (1153)
T ss_pred cCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeecccccc
Confidence 4456889999999999998876431 12346788999999999999999998874432 11211000
Q ss_pred -hhhhc-------cc----hHHHHHH-------------HHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 279 -VSKWR-------GD----SEKLIKV-------------LFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 279 -~~~~~-------g~----~~~~l~~-------------lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
...+. .. ....+.. ........++.+|+|||++.. .....
T Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~---------------~~l~~ 313 (1153)
T PLN03210 249 SMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ---------------DVLDA 313 (1153)
T ss_pred chhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH---------------HHHHH
Confidence 00000 00 0000111 111122345578999998642 12223
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCH----HHHHHHhc
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPY----DLLVERTE 409 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl----~~La~~t~ 409 (489)
+....+.. ..+ ..||.||.+...+.. ...+..+.++.|+.++..+++..++-..... ..++ .++++.+.
T Consensus 314 L~~~~~~~-~~G--srIIiTTrd~~vl~~---~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~-~~~~~~l~~~iv~~c~ 386 (1153)
T PLN03210 314 LAGQTQWF-GSG--SRIIVITKDKHFLRA---HGIDHIYEVCLPSNELALEMFCRSAFKKNSP-PDGFMELASEVALRAG 386 (1153)
T ss_pred HHhhCccC-CCC--cEEEEEeCcHHHHHh---cCCCeEEEecCCCHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHhC
Confidence 33222211 122 234556665322211 1356778899999999999998876443222 1222 33555566
Q ss_pred CCc
Q 011305 410 GYS 412 (489)
Q Consensus 410 G~s 412 (489)
|..
T Consensus 387 GLP 389 (1153)
T PLN03210 387 NLP 389 (1153)
T ss_pred CCc
Confidence 544
|
syringae 6; Provisional |
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.6e-06 Score=78.45 Aligned_cols=111 Identities=21% Similarity=0.264 Sum_probs=57.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc--hhh--------hhccchHHHHHHHHHHHH--hcCCcEEEEch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS--VVS--------KWRGDSEKLIKVLFELAR--HHAPSTIFLDE 309 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~--l~~--------~~~g~~~~~l~~lf~~A~--~~~p~VL~IDE 309 (489)
+..+||||+||+|||++|+.++.. .-++..+.+. +.+ .....+-..+...+.... ...+.+|+||.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDs 89 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDN 89 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEec
Confidence 466999999999999999999732 1222222211 000 000111122223233222 24468999999
Q ss_pred hhhHHh------hhcccc--hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 310 IDAIIS------QRGEAR--SEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 310 iD~l~~------~r~~~~--~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
++.+.. .+.... .+......+...++..+..+...+..|++++-.
T Consensus 90 I~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tAhe 142 (220)
T TIGR01618 90 ISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATAWE 142 (220)
T ss_pred HHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEEee
Confidence 999865 221111 011122334555666665554455556555443
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.8e-05 Score=73.27 Aligned_cols=80 Identities=18% Similarity=0.322 Sum_probs=53.8
Q ss_pred cccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh-hcc----------------------chHHH
Q 011305 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-WRG----------------------DSEKL 289 (489)
Q Consensus 236 ~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~-~~g----------------------~~~~~ 289 (489)
.++.+++.-++++||||+|||+++..++... +.+.++++..++... ... +....
T Consensus 6 ~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 6 GGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHH
Confidence 3456667789999999999999999998754 667888888652111 000 01112
Q ss_pred HHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 290 IKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 290 l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
+..+........+++|+||-+..+..
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCcHHHhH
Confidence 33344444455789999999999864
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.9e-06 Score=91.61 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=109.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeccchhhhhc-----c----ch----HHHHHHHHHHHHhcCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR-----G----DS----EKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--~~~~i~v~~s~l~~~~~-----g----~~----~~~l~~lf~~A~~~~p~VL~I 307 (489)
-.+++.|.|||||-.++|++.+.. ..||+.|+|..+..... | .. .+-.+..++.|.. +.||+
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~g---GtlFl 413 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADG---GTLFL 413 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCC---CccHH
Confidence 579999999999999999998876 58899999966543221 1 11 1122223333333 79999
Q ss_pred chhhhHHhhhcccchhhHHHHHHHHHHHHHhc--------CCccCCCcEEEEEEeCCCCc-------ccHHHHhhccccc
Q 011305 308 DEIDAIISQRGEARSEHEASRRLKTELLIQMD--------GLTQSDELVFVLAATNLPWE-------LDAAMLRRLEKRI 372 (489)
Q Consensus 308 DEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld--------g~~~~~~~viVIatTn~p~~-------Ld~al~rRf~~~i 372 (489)
|||..+... ++..||.-+. +.. ..-.|-||++|+.+-. +-+.+.=|. ...
T Consensus 414 deIgd~p~~-------------~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~ 478 (606)
T COG3284 414 DEIGDMPLA-------------LQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAF 478 (606)
T ss_pred HHhhhchHH-------------HHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCe
Confidence 999888654 3445555443 222 3334788999987421 122222244 234
Q ss_pred ccCCCCHHHHH---HHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCC---
Q 011305 373 LVPLPDTEARR---AMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDE--- 446 (489)
Q Consensus 373 ~~~~Pd~~eR~---~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~--- 446 (489)
.+.+|...+|. .+|.+++.+... ...+ .++.-+..|+...|.+++|.+-+.++.....++...
T Consensus 479 ~i~lP~lr~R~d~~~~l~~~~~~~~~-~~~~----------l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~ 547 (606)
T COG3284 479 VITLPPLRERSDRIPLLDRILKREND-WRLQ----------LDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRV 547 (606)
T ss_pred eeccCchhcccccHHHHHHHHHHccC-CCcc----------CCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEc
Confidence 45566665554 455555544332 1111 223334445556666666665555554433222210
Q ss_pred -------C----CCCCCCCHHHHHHHHhhhCCChh
Q 011305 447 -------L----PQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 447 -------~----~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
. .....+..+.+.+|+...+.-.+
T Consensus 548 ~dlp~~l~~~~~~~~~~~~~~~l~~al~~~~~~is 582 (606)
T COG3284 548 SDLPPELLEEQATPREDIEKAALLAALQATNGNIS 582 (606)
T ss_pred ccCCHHHHhhhcccccchHHHHHHHHHHHcCCCHH
Confidence 0 01223556666677766665444
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.3e-05 Score=77.67 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+++|+|+||||||++|.++++.++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999999875
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.6e-05 Score=90.32 Aligned_cols=206 Identities=20% Similarity=0.145 Sum_probs=126.9
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccC-chhhcccC--CCCc-eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGLL--SPWK-GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~-~~~~~~~~--~~~~-~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+.+....++.|.......+.+++...-.. +..+.... .... .++++||||+|||+.+..+|.++|..+++.|+++
T Consensus 313 k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~ 392 (871)
T KOG1968|consen 313 KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASD 392 (871)
T ss_pred ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCccc
Confidence 344455567888777666777666554221 11122111 1112 3699999999999999999999999999999987
Q ss_pred hhhhhccc-------hHHHHHHHH---HHHH-hcCC-cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 278 VVSKWRGD-------SEKLIKVLF---ELAR-HHAP-STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 278 l~~~~~g~-------~~~~l~~lf---~~A~-~~~p-~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
..++.... ....+...+ .... .... .||++||+|.+... . +..+..+...+. .
T Consensus 393 ~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d---------Rg~v~~l~~l~~-----k 457 (871)
T KOG1968|consen 393 VRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D---------RGGVSKLSSLCK-----K 457 (871)
T ss_pred cccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h---------hhhHHHHHHHHH-----h
Confidence 76543311 111122222 0000 0112 39999999998762 1 222333333332 1
Q ss_pred CcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHH
Q 011305 346 ELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAA 424 (489)
Q Consensus 346 ~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~dl~~La~~t~G~sg~Di~~l~~~A~ 424 (489)
..+-||+++|........-..|....++|+.|+......-+..++....... +..++++.+.+ ++||++.+....
T Consensus 458 s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~----~~DiR~~i~~lq 533 (871)
T KOG1968|consen 458 SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLS----GGDIRQIIMQLQ 533 (871)
T ss_pred ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhc----ccCHHHHHHHHh
Confidence 1244788898887766656666668899999999998877777766555543 34567777755 568887666544
Q ss_pred hH
Q 011305 425 MQ 426 (489)
Q Consensus 425 ~~ 426 (489)
.-
T Consensus 534 ~~ 535 (871)
T KOG1968|consen 534 FW 535 (871)
T ss_pred hh
Confidence 43
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00031 Score=68.61 Aligned_cols=172 Identities=17% Similarity=0.184 Sum_probs=96.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC---cEEEEeccchh-----hhhc----cc--------hHHHHHHHHHHHH-hcCC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKT---TFFNISASSVV-----SKWR----GD--------SEKLIKVLFELAR-HHAP 302 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~---~~i~v~~s~l~-----~~~~----g~--------~~~~l~~lf~~A~-~~~p 302 (489)
-+.++|+-|||||++.|++...++. -.+.++...+. ..++ .. .+..-+.+....+ ...|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 5789999999999999977776632 22344432221 1111 11 1122223333333 3456
Q ss_pred cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc--EEEEEEeCCCCcc-c---HHHHhhcccccccCC
Q 011305 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL--VFVLAATNLPWEL-D---AAMLRRLEKRILVPL 376 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~--viVIatTn~p~~L-d---~al~rRf~~~i~~~~ 376 (489)
.++++||++.+.... ...+.-..+......+. ++.++-..--..+ - ..+..|+...+++++
T Consensus 133 v~l~vdEah~L~~~~-------------le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P 199 (269)
T COG3267 133 VVLMVDEAHDLNDSA-------------LEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPP 199 (269)
T ss_pred eEEeehhHhhhChhH-------------HHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCC
Confidence 899999999886441 11221111111222222 3333222111111 1 233348877789999
Q ss_pred CCHHHHHHHHHHhcCCCCCC----CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 377 PDTEARRAMFESLLPSQTGE----ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~~~~~~----~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
.+.++-...++..++..... .+..+..+...+.| .|+-|.+++..|...+..
T Consensus 200 ~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~ 255 (269)
T COG3267 200 LTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYS 255 (269)
T ss_pred cChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 99998888888888665443 23346667777887 667888888877766543
|
|
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.96 E-value=7.6e-05 Score=68.07 Aligned_cols=25 Identities=36% Similarity=0.518 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
...+.++|+||+||||++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3579999999999999999999887
|
|
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.7e-06 Score=70.43 Aligned_cols=23 Identities=48% Similarity=0.908 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 011305 245 ILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~ 267 (489)
|.|+||||+|||++|+.+++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998774
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00011 Score=68.45 Aligned_cols=71 Identities=23% Similarity=0.323 Sum_probs=46.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------c-----------------------chH-----
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G-----------------------DSE----- 287 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g-----------------------~~~----- 287 (489)
+|++||||||||+++..++.+. |.++++++..+-..... | ...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 7899999999999999887754 67777776533221100 0 000
Q ss_pred HHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 288 KLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 288 ~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
..+..+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444445567789999999988764
|
A related protein is found in archaea. |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=70.91 Aligned_cols=39 Identities=26% Similarity=0.408 Sum_probs=32.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+.+.+.-++++||||+|||+++..+|.+. +.++++++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45666778999999999999999998755 7788888876
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=4e-05 Score=89.28 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=88.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch------hhhhc-----cchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV------VSKWR-----GDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l------~~~~~-----g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
..+++||.|.||+|||+++.++|++.|..++.|+.++- ++.+. |+....-..++ .|.+ ....+++||
T Consensus 1542 v~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL-~amr-~G~WVlLDE 1619 (4600)
T COG5271 1542 VGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFL-HAMR-DGGWVLLDE 1619 (4600)
T ss_pred cCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHH-HHhh-cCCEEEeeh
Confidence 35789999999999999999999999999999998643 22211 11111111222 2222 347999999
Q ss_pred hhhHHhhhcccchhhHHHHHHHHHHHHHhc-----------CCccCCCcEEEEEEeCCCC------cccHHHHhhccccc
Q 011305 310 IDAIISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRI 372 (489)
Q Consensus 310 iD~l~~~r~~~~~~~~~~~~i~~~LL~~ld-----------g~~~~~~~viVIatTn~p~------~Ld~al~rRf~~~i 372 (489)
+.... +.++..|-..+| -.-...++..|+||-|..+ .|+..+..|| .++
T Consensus 1620 iNLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV 1685 (4600)
T COG5271 1620 INLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVV 1685 (4600)
T ss_pred hhhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heE
Confidence 96542 223333333333 2212234466666555432 3999999999 558
Q ss_pred ccCCCCHHHHHHHHHHhcCC
Q 011305 373 LVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.+.-.+.++...|.......
T Consensus 1686 ~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1686 KMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred EecccccchHHHHHHhhCCc
Confidence 88888888888888776643
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0021 Score=68.43 Aligned_cols=37 Identities=27% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+|..++|+|++|+||||++..+|..+ +..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 346789999999999999999999877 5566666654
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.1e-05 Score=68.04 Aligned_cols=31 Identities=35% Similarity=0.662 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
|+|.|||||||||+|+.+|+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988775553
|
... |
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=64.37 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.|.|+.-+++.+..++...+..+. -..|.-+-|+|+||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 789999999999999988775542 1223445699999999999999999986
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00027 Score=75.68 Aligned_cols=79 Identities=24% Similarity=0.369 Sum_probs=56.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------cc--------hHHHHHHHHHHHHhc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 300 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g~--------~~~~l~~lf~~A~~~ 300 (489)
+..+...++|+|+||+|||+++..++... +.++++++..+...... |. .+..+..++......
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 45666789999999999999999998866 67888888755432211 10 111244555666667
Q ss_pred CCcEEEEchhhhHHhh
Q 011305 301 APSTIFLDEIDAIISQ 316 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~ 316 (489)
.|.+|+||++..+...
T Consensus 156 ~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 156 KPDLVVIDSIQTMYSP 171 (446)
T ss_pred CCCEEEEechhhhccc
Confidence 8899999999988654
|
|
| >PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting | Back alignment and domain information |
|---|
Probab=97.73 E-value=2e-05 Score=60.74 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhc
Q 011305 452 PIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 484 (489)
Q Consensus 452 ~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g 484 (489)
+|+++||..||++++||+++ ++++|++|++.||
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 69999999999999999885 7999999999998
|
It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A .... |
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=7.7e-05 Score=69.15 Aligned_cols=33 Identities=30% Similarity=0.567 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
+.|++.||||+||||+|+.|++.++.+++.++.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~ 34 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDA 34 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecch
Confidence 358999999999999999999999999888774
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00022 Score=74.33 Aligned_cols=115 Identities=17% Similarity=0.264 Sum_probs=63.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEEeccchh-------h---hhcc------chHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASSVV-------S---KWRG------DSEKLIKVLFELA 297 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~-~~~i~v~~s~l~-------~---~~~g------~~~~~l~~lf~~A 297 (489)
...+..++|.||+|+||||++..+|..+ | ..+..+....+. . +..| .....+...+.
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~-- 211 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA-- 211 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH--
Confidence 3445789999999999999999999864 3 345455543321 0 0001 01111222222
Q ss_pred HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhc
Q 011305 298 RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRL 368 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf 368 (489)
+.....+|+||.+.....+ ..+.+.+..+.+.......++|+.+|+..+.+...+ .+|
T Consensus 212 ~l~~~DlVLIDTaG~~~~d------------~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi-~~f 269 (374)
T PRK14722 212 ELRNKHMVLIDTIGMSQRD------------RTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVV-QAY 269 (374)
T ss_pred HhcCCCEEEEcCCCCCccc------------HHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHH-HHH
Confidence 2234589999999543211 123334444544433445577887888777766443 444
|
|
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=75.40 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=40.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...++++.||+|||||+++.+++... | -.++.+.++.... . ..+.. -..+.+|+|||+..+..
T Consensus 208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~----~---~~lg~--v~~~DlLI~DEvgylp~ 274 (449)
T TIGR02688 208 PNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNIS----T---RQIGL--VGRWDVVAFDEVATLKF 274 (449)
T ss_pred cCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHH----H---HHHhh--hccCCEEEEEcCCCCcC
Confidence 45799999999999999999988772 3 2233333332211 1 11111 23358999999987653
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00037 Score=72.80 Aligned_cols=79 Identities=24% Similarity=0.340 Sum_probs=55.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------cc--------hHHHHHHHHHHHHhc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 300 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g~--------~~~~l~~lf~~A~~~ 300 (489)
+..++.-++|+|+||+|||+++..+|... +.++++++..+-..... |. .+..+..+.+.....
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 35566779999999999999999998765 46788887654322110 10 112345566666677
Q ss_pred CCcEEEEchhhhHHhh
Q 011305 301 APSTIFLDEIDAIISQ 316 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~ 316 (489)
+|.+|+||++..+...
T Consensus 158 ~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 158 KPDLVIIDSIQTVYSS 173 (372)
T ss_pred CCcEEEEcchHHhhcc
Confidence 8999999999998644
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0019 Score=66.46 Aligned_cols=163 Identities=18% Similarity=0.139 Sum_probs=89.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc-------------------------------
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD------------------------------- 285 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~------------------------------- 285 (489)
.++..+.+.||..+|||++...+.+.+ +...+.+++..+.......
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 456789999999999999999988766 7788888876543211100
Q ss_pred hHHHHHHHHHH---HHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--C-CCcEEEEEEeCCCCc
Q 011305 286 SEKLIKVLFEL---ARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--S-DELVFVLAATNLPWE 359 (489)
Q Consensus 286 ~~~~l~~lf~~---A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--~-~~~viVIatTn~p~~ 359 (489)
........|+. ....+|-||+|||+|.+..... ........|-...+.-.. . ..-+++++.+..+..
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~ 181 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYI 181 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHHHhcccCcccceEEEEEecCccccc
Confidence 11111222222 1224678999999999975311 112222222222221110 1 122344444433322
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
....-.+ .+...+.++..+.++-..+++.+-... ....++.+-..|.|..
T Consensus 182 ~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~~---~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 182 ILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLEF---SQEQLEQLMDWTGGHP 233 (331)
T ss_pred ccCCCCCCcccccceeCCCCCHHHHHHHHHhhhccC---CHHHHHHHHHHHCCCH
Confidence 2111112 345667778889999888887763221 1223777888888754
|
|
| >COG1485 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00026 Score=72.11 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=57.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE-EEEeccchhhh-------hccchHHHHHHHHHHHHhcCCcEEEEchh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF-FNISASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~-i~v~~s~l~~~-------~~g~~~~~l~~lf~~A~~~~p~VL~IDEi 310 (489)
..+++|+.|||+-|.|||+|.-.....+-.+- ..+.-..++.. ..|++.- +..+-... .....||+|||+
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dp-l~~iA~~~-~~~~~vLCfDEF 139 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDP-LPPIADEL-AAETRVLCFDEF 139 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCc-cHHHHHHH-HhcCCEEEeeee
Confidence 45679999999999999999999998874322 22222222211 1122211 11111111 112369999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
..-- -....++..|+..+- ..+|.+++|+|.+
T Consensus 140 ~VtD----------I~DAMiL~rL~~~Lf-----~~GV~lvaTSN~~ 171 (367)
T COG1485 140 EVTD----------IADAMILGRLLEALF-----ARGVVLVATSNTA 171 (367)
T ss_pred eecC----------hHHHHHHHHHHHHHH-----HCCcEEEEeCCCC
Confidence 5321 112345555655542 2358889999876
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00036 Score=67.05 Aligned_cols=39 Identities=31% Similarity=0.396 Sum_probs=31.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+..++.-++++|+||+|||+++..+|.+. +.++++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 45666779999999999999999999765 5677778654
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00044 Score=67.51 Aligned_cols=77 Identities=22% Similarity=0.343 Sum_probs=49.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc-----------------------------c-
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR-----------------------------G- 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~-----------------------------g- 284 (489)
..++...+++.||||||||+++..++... +.+.++++..+-..... +
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~ 99 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGN 99 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccCh
Confidence 35566789999999999999986655543 56677776432111100 0
Q ss_pred -chHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 285 -DSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 285 -~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
..+..+..+........|.+++|||+-.+.
T Consensus 100 ~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 100 SEKRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 012334445555555678999999998765
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=97.67 E-value=8.8e-05 Score=70.32 Aligned_cols=123 Identities=14% Similarity=0.098 Sum_probs=57.4
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHh---CCcEEEEeccchhhhhccc-----hHH------------HHHHHHHHHHhcCCc
Q 011305 245 ILLFGPPGTGKTMLAKAV-ATEC---KTTFFNISASSVVSKWRGD-----SEK------------LIKVLFELARHHAPS 303 (489)
Q Consensus 245 vLL~GppGtGKT~lAral-A~el---~~~~i~v~~s~l~~~~~g~-----~~~------------~l~~lf~~A~~~~p~ 303 (489)
.+++|.||+|||+.|-.. .... |.+++. +...|.-..... ... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 588999999999988555 4332 666554 443222111100 000 001111111112458
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCC
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~P 377 (489)
+|+|||+..+.+.+...... ....+..+. ..+..+.-|+.+|.++..+|+.+++..+..+.+..+
T Consensus 82 liviDEa~~~~~~r~~~~~~-------~~~~~~~l~--~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGKK-------VPEIIEFLA--QHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp EEEETTGGGTSB---T-T-----------HHHHGGG--GCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred EEEEECChhhcCCCcccccc-------chHHHHHHH--HhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 99999999998887652110 112223333 223334567889999999999998877666655443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.7e-05 Score=81.25 Aligned_cols=63 Identities=22% Similarity=0.324 Sum_probs=48.6
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEec
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISA 275 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~ 275 (489)
.|+|+.|++++++++.+.+...... +....+.++|.||||+|||+||+.|++.+ ..|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~g------l~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQG------LEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHh------cCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 4889999999999999887443221 12344678999999999999999999987 456676654
|
|
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.4e-05 Score=69.49 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++..++|+|+||||||++|+.+|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 457899999999999999999999999888853
|
|
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0031 Score=66.90 Aligned_cols=170 Identities=23% Similarity=0.259 Sum_probs=90.0
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~ 286 (489)
-.|.|.+++|+.+.-++---. ......+ ....-+|||.|.|||.|+.|.+-+-+-.-.-+|.-.-.. .-.|-+
T Consensus 331 PSIfG~~DiKkAiaClLFgGs--rK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGS---SAAGLT 405 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGS--RKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGS---SAAGLT 405 (729)
T ss_pred chhcCchhHHHHHHHHhhcCc--cccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCc---ccccce
Confidence 478999999999986553321 1111111 233457999999999999999998776544333211000 000101
Q ss_pred HHHHH-----HHHHHH---HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-cCCCcEEEEEEeCCC
Q 011305 287 EKLIK-----VLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLP 357 (489)
Q Consensus 287 ~~~l~-----~lf~~A---~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-~~~~~viVIatTn~p 357 (489)
+..++ +.+-.. --...+|++|||+|.+-.+.. -.-|++.++. ++--.=-|+. .-+.+.-|++++|.+
T Consensus 406 ASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DR--VAIHEAMEQQ--TISIAKAGITT~LNSRtSVLAAANpv 481 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDR--VAIHEAMEQQ--TISIAKAGITTTLNSRTSVLAAANPV 481 (729)
T ss_pred eeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhh--hHHHHHHHhh--hHHHhhhcceeeecchhhhhhhcCCc
Confidence 10000 000000 001247999999999854311 1112221111 0100111331 234456688888876
Q ss_pred Cc-------------ccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 358 WE-------------LDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 358 ~~-------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
.. +-+.+++||+.++-+..-..++|-..+.
T Consensus 482 fGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lA 524 (729)
T KOG0481|consen 482 FGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLA 524 (729)
T ss_pred cccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHH
Confidence 21 4489999999988777765554444333
|
|
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00014 Score=67.71 Aligned_cols=34 Identities=21% Similarity=0.442 Sum_probs=29.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+++.|+||+||||+|+.++..++.+++..+.-.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~ 35 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLH 35 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEE
Confidence 4899999999999999999999999988776543
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00031 Score=79.70 Aligned_cols=162 Identities=23% Similarity=0.364 Sum_probs=107.7
Q ss_pred CccccCc-HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEecc
Q 011305 208 WESIKGL-ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISAS 276 (489)
Q Consensus 208 ~~dliG~-e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~s 276 (489)
++.++|. ++-.+.+.+.+.. ...++-+|.|.||+|||.++.-+|+.. +..++.++..
T Consensus 185 ldPvigr~deeirRvi~iL~R------------rtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g 252 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSR------------KTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFG 252 (898)
T ss_pred CCCccCCchHHHHHHHHHHhc------------cCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhh
Confidence 6778886 5555555544422 223688999999999999999999976 3456677766
Q ss_pred chh--hhhccchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 277 SVV--SKWRGDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 277 ~l~--~~~~g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
.+. .++.|+.+..++.+...+.. ....||||||++.+.+.....+ .-...+ +|..+- ..+. +-+|+|
T Consensus 253 ~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-----~~d~~n-lLkp~L---~rg~-l~~IGa 322 (898)
T KOG1051|consen 253 SLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-----AIDAAN-LLKPLL---ARGG-LWCIGA 322 (898)
T ss_pred hcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-----HHHHHH-hhHHHH---hcCC-eEEEec
Confidence 443 45778899999999998884 4557999999999987654311 111122 222221 2233 556666
Q ss_pred eC-CCC----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCC
Q 011305 354 TN-LPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 354 Tn-~p~----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
|. .-. .=+|++-+||+. +.++.|+.+.-..||......
T Consensus 323 tT~e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~ 365 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSER 365 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhh
Confidence 54 221 257899999954 788999877766666665544
|
|
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00019 Score=78.13 Aligned_cols=123 Identities=16% Similarity=0.172 Sum_probs=70.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~ 318 (489)
.+..+.++|+||||||||+++.+|++.++...+.|+++.-... |...-.....+.+|||+-.-.-...
T Consensus 428 iPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~------------FwL~pl~D~~~~l~dD~t~~~~~~~ 495 (647)
T PHA02624 428 VPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLN------------FELGCAIDQFMVVFEDVKGQPADNK 495 (647)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhH------------HHhhhhhhceEEEeeeccccccccc
Confidence 4555689999999999999999999999777787875432111 2222111225888888843221100
Q ss_pred ccchhhHHHHHHHHHHHHHhcCC-cc------CC----CcEEEEEEeCCCCcccHHHHhhcccccccCC
Q 011305 319 EARSEHEASRRLKTELLIQMDGL-TQ------SD----ELVFVLAATNLPWELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 319 ~~~~~~~~~~~i~~~LL~~ldg~-~~------~~----~~viVIatTn~p~~Ld~al~rRf~~~i~~~~ 376 (489)
. ......-.-+..|-+.+||. .. .+ ..-..|.|||. ..++..+.-||...+.|..
T Consensus 496 ~--Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 496 D--LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred c--CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 0 00000000113455666665 10 00 00123447775 4688889889988888765
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00054 Score=66.71 Aligned_cols=77 Identities=18% Similarity=0.305 Sum_probs=51.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc-------------------------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------------------------------- 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------------------------------- 283 (489)
+.+.+..++++|+||||||+++..++.+. +.+.++++..+-.....
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 45667889999999999999999997653 67777776533221100
Q ss_pred --cchHHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 284 --GDSEKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 284 --g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
......+..+........|.+++||++..+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112333444444555678999999998764
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0009 Score=65.47 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=31.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
++.+++..+|++||||||||+++..++.+. |.+.++++..+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 456777889999999999999998776542 66777776533
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00074 Score=70.82 Aligned_cols=140 Identities=14% Similarity=0.114 Sum_probs=73.2
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccchh--h----
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVV--S---- 280 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~l~--~---- 280 (489)
.+.+++.+.+.+...+....... ....+..++|+||+|+||||++.-+|..+ +..+..+++.... .
T Consensus 147 ~~~v~~~l~~~l~~~i~~~~~~~-~~~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL 225 (388)
T PRK12723 147 YDKVRDSVIIYIAKTIKCSGSII-DNLKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI 225 (388)
T ss_pred HHHHHHHHHHHHHHHhhccCccc-cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHH
Confidence 45566665555443332111110 11234679999999999999999999865 2344444433211 0
Q ss_pred -h---------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 281 -K---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 281 -~---------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
. ........+...+... ....+|+||.+.....+ ...+.++...++........++|
T Consensus 226 ~~~a~~lgvpv~~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~-----------~~~l~el~~~l~~~~~~~e~~LV 292 (388)
T PRK12723 226 QTYGDIMGIPVKAIESFKDLKEEITQS--KDFDLVLVDTIGKSPKD-----------FMKLAEMKELLNACGRDAEFHLA 292 (388)
T ss_pred HHHhhcCCcceEeeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccC-----------HHHHHHHHHHHHhcCCCCeEEEE
Confidence 0 1111222233333332 34579999999765321 11133444444433323345777
Q ss_pred EEEeCCCCcccHHHHhhc
Q 011305 351 LAATNLPWELDAAMLRRL 368 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf 368 (489)
+.+|.....+.. +.++|
T Consensus 293 lsat~~~~~~~~-~~~~~ 309 (388)
T PRK12723 293 VSSTTKTSDVKE-IFHQF 309 (388)
T ss_pred EcCCCCHHHHHH-HHHHh
Confidence 777777666663 44444
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0013 Score=67.85 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=44.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hhc-------------cchHHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KWR-------------GDSEKLIKVLFELAR 298 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~~-------------g~~~~~l~~lf~~A~ 298 (489)
+.-++|.||+|+||||++..+|..+ +..+..+++..+.. .+. +.....+......++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 5679999999999999999888766 45555555432210 000 111122333444444
Q ss_pred hcCCcEEEEchhhhHH
Q 011305 299 HHAPSTIFLDEIDAII 314 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~ 314 (489)
.....+|+||....+.
T Consensus 220 ~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 220 ARGIDVVLIDTAGRMH 235 (336)
T ss_pred hCCCCEEEEECCCccC
Confidence 4555789999886553
|
|
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00042 Score=70.82 Aligned_cols=79 Identities=25% Similarity=0.308 Sum_probs=53.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
++++++.++|+||||||||+|+-.++.+. +.+++++++.+.... .+...+..+..+....+
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666789999999999999988876654 677777876442211 01122333333434445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
...+.+|+||-+..+.+.
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 567899999999998864
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00058 Score=69.88 Aligned_cols=79 Identities=24% Similarity=0.299 Sum_probs=53.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
+++.++-+.++||||||||+++-.++.+. +...++++..+-... .+...+..+..+-...+
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 45666789999999999999999887644 677888876432111 01122333333333445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
...+.+|+||-+-.+.+.
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 567899999999999863
|
RecA couples ATP hydrolysis to DNA strand exchange. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=63.71 Aligned_cols=34 Identities=41% Similarity=0.637 Sum_probs=27.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
+++.|||||||||+|+.+++.++ ...++..++..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~~~ 35 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEIRR 35 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHHHH
Confidence 78999999999999999999998 44555555443
|
... |
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00059 Score=65.76 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=31.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---C------CcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---K------TTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~------~~~i~v~~s~ 277 (489)
+..++.-+.|+||||+|||+++..+|... + ..+++++..+
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 45666779999999999999999998764 3 5667777644
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0018 Score=68.31 Aligned_cols=132 Identities=20% Similarity=0.154 Sum_probs=76.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
.++++||.+|||||+++.+.+......++++..++......- ......+..+.......||||||+.+..=
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~~~~~~yifLDEIq~v~~W------- 109 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELKEREKSYIFLDEIQNVPDW------- 109 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhhccCCceEEEecccCchhH-------
Confidence 789999999999999999988886656777666654332211 11122222222224479999999876321
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC---cccHHHHhhcccccccCCCCHHHHHH-------------HHH
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRLEKRILVPLPDTEARRA-------------MFE 387 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~---~Ld~al~rRf~~~i~~~~Pd~~eR~~-------------IL~ 387 (489)
...+..+. |... . .+ +|.+++..- ...+.+..|. ..+.+.+.+..|... .++
T Consensus 110 ----~~~lk~l~---d~~~--~-~v-~itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~ 177 (398)
T COG1373 110 ----ERALKYLY---DRGN--L-DV-LITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKLKGEEIEPSKLELLFE 177 (398)
T ss_pred ----HHHHHHHH---cccc--c-eE-EEECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhhcccccchhHHHHHHH
Confidence 12223332 2111 1 24 333333332 2344555575 667777778888754 567
Q ss_pred HhcCCCCCC
Q 011305 388 SLLPSQTGE 396 (489)
Q Consensus 388 ~~l~~~~~~ 396 (489)
.++...+.+
T Consensus 178 ~Yl~~GGfP 186 (398)
T COG1373 178 KYLETGGFP 186 (398)
T ss_pred HHHHhCCCc
Confidence 777665554
|
|
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00044 Score=75.08 Aligned_cols=34 Identities=24% Similarity=0.540 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE-Eec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN-ISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~-v~~ 275 (489)
.++++|+||||||||++|-+|++.++..++. +|.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 4689999999999999999999999655543 554
|
|
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00076 Score=65.76 Aligned_cols=135 Identities=10% Similarity=0.067 Sum_probs=91.5
Q ss_pred CceEEEEcCCC-CcHHHHHHHHHHHhCC---------cEEEEeccchhhhh-ccchHHHHHHHHHHH----HhcCCcEEE
Q 011305 242 WKGILLFGPPG-TGKTMLAKAVATECKT---------TFFNISASSVVSKW-RGDSEKLIKVLFELA----RHHAPSTIF 306 (489)
Q Consensus 242 ~~~vLL~GppG-tGKT~lAralA~el~~---------~~i~v~~s~l~~~~-~g~~~~~l~~lf~~A----~~~~p~VL~ 306 (489)
.+..||.|..+ +||..++.-+++.+.. .++.+....-..+. ..-.-..++.+.... ......|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 36799999998 9999999988887622 23333321100000 001223344444333 233456999
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
|+++|.+... ..+.||+.++ .++..+++|..|.++..+.+.++||| ..+.++.|+...-.+++
T Consensus 95 I~~ae~mt~~-------------AANALLKtLE---EPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~ 157 (263)
T PRK06581 95 IYSAELMNLN-------------AANSCLKILE---DAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELY 157 (263)
T ss_pred EechHHhCHH-------------HHHHHHHhhc---CCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHH
Confidence 9999998533 5688999987 34455777778888999999999999 66899999998888887
Q ss_pred HHhcCCC
Q 011305 387 ESLLPSQ 393 (489)
Q Consensus 387 ~~~l~~~ 393 (489)
...+...
T Consensus 158 ~~~~~p~ 164 (263)
T PRK06581 158 SQFIQPI 164 (263)
T ss_pred HHhcccc
Confidence 7776543
|
|
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00069 Score=65.71 Aligned_cols=40 Identities=23% Similarity=0.249 Sum_probs=31.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+.+++.-+.|+||||||||+++..++... +...++++..+
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 45666778999999999999999998553 25677787654
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00046 Score=80.92 Aligned_cols=134 Identities=18% Similarity=0.196 Sum_probs=88.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------hhhhhccchHHH---HHHHHHHHHhcCCcEEEEchhhhH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVSKWRGDSEKL---IKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------l~~~~~g~~~~~---l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
-.+||.||+.+|||+.+..+|++.|..|+.|+-.+ ..+.|+.+.... -..++-.|.+.. -.|++||+...
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~G-yWIVLDELNLA 967 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRG-YWIVLDELNLA 967 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcC-cEEEeeccccC
Confidence 46999999999999999999999999999998643 334444222211 122333344333 58999999654
Q ss_pred HhhhcccchhhHHHHHHHHHHHHHhc-----------CCccCCCcEEEEEEeCCCC------cccHHHHhhcccccccCC
Q 011305 314 ISQRGEARSEHEASRRLKTELLIQMD-----------GLTQSDELVFVLAATNLPW------ELDAAMLRRLEKRILVPL 376 (489)
Q Consensus 314 ~~~r~~~~~~~~~~~~i~~~LL~~ld-----------g~~~~~~~viVIatTn~p~------~Ld~al~rRf~~~i~~~~ 376 (489)
+.+ ++..|-..+| .+..+.+...++||-|.|. .|..|++.|| ..++|..
T Consensus 968 pTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRF-lE~hFdd 1033 (4600)
T COG5271 968 PTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRF-LEMHFDD 1033 (4600)
T ss_pred cHH-------------HHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhh-Hhhhccc
Confidence 322 3333333333 1222334466666666663 3889999999 6688888
Q ss_pred CCHHHHHHHHHHhcC
Q 011305 377 PDTEARRAMFESLLP 391 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~ 391 (489)
-.+++...||...++
T Consensus 1034 ipedEle~ILh~rc~ 1048 (4600)
T COG5271 1034 IPEDELEEILHGRCE 1048 (4600)
T ss_pred CcHHHHHHHHhccCc
Confidence 888999999987664
|
|
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=63.55 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=52.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh--------------h----------------
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------W---------------- 282 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~--------------~---------------- 282 (489)
++.+++..+|+.||||||||+++..++.+. |.+.++++..+-... +
T Consensus 14 GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~ 93 (226)
T PF06745_consen 14 GGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERI 93 (226)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGS
T ss_pred CCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccc
Confidence 346677889999999999999998876533 778887775332110 0
Q ss_pred ---ccchHHHHHHHHHHHHhcCCcEEEEchhhhH
Q 011305 283 ---RGDSEKLIKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 283 ---~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
.......+..+.+.....++.+++||-+..+
T Consensus 94 ~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 94 GWSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp T-TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred cccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1123444555666666777899999999998
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00097 Score=63.09 Aligned_cols=33 Identities=15% Similarity=0.157 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.-.+++||+|+|||+++..++..+ +..++.++.
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999999999888876 566665643
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00044 Score=63.43 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=31.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.-++|+|+||+||||+|+.+++.++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5688999999999999999999997667777765554
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00013 Score=67.42 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=38.7
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEeccch
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSV 278 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s~l 278 (489)
++|.++..+++...+.. .. ...++.++|+|++|+|||++++++...+..+ ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~~-~~--------~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLDA-AQ--------SGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTGG-TS--------S-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHHH-HH--------cCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 67888999998887741 11 2345789999999999999999998877443 777776554
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00015 Score=71.87 Aligned_cols=75 Identities=27% Similarity=0.371 Sum_probs=50.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH------HhCCcEEEEeccchhhhhcc-chHHHHHHHHHHH--------HhcCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT------ECKTTFFNISASSVVSKWRG-DSEKLIKVLFELA--------RHHAPSTIF 306 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~------el~~~~i~v~~s~l~~~~~g-~~~~~l~~lf~~A--------~~~~p~VL~ 306 (489)
...+||.||+|.||+.+|+.+.. ++..+|++|||..+.+...- ..-..++..|.-| +....++||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 35799999999999999999875 45789999999887543210 0001122222222 223457999
Q ss_pred EchhhhHHhh
Q 011305 307 LDEIDAIISQ 316 (489)
Q Consensus 307 IDEiD~l~~~ 316 (489)
+|||..+..+
T Consensus 288 ldeigelgad 297 (531)
T COG4650 288 LDEIGELGAD 297 (531)
T ss_pred hHhhhhcCcc
Confidence 9999888654
|
|
| >COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00042 Score=66.80 Aligned_cols=72 Identities=26% Similarity=0.388 Sum_probs=49.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec-cchhhhhccc-------------hHHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA-SSVVSKWRGD-------------SEKLIKVLFELAR 298 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~-s~l~~~~~g~-------------~~~~l~~lf~~A~ 298 (489)
.+.+.|+.|||||||||+.|-+|+-+ ...+..++- +++.+...|. ..-+-..+....+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 45689999999999999999999976 233444543 3443322222 1122334566778
Q ss_pred hcCCcEEEEchhhh
Q 011305 299 HHAPSTIFLDEIDA 312 (489)
Q Consensus 299 ~~~p~VL~IDEiD~ 312 (489)
.+.|.|+++|||..
T Consensus 216 sm~PEViIvDEIGt 229 (308)
T COG3854 216 SMSPEVIIVDEIGT 229 (308)
T ss_pred hcCCcEEEEecccc
Confidence 89999999999954
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0018 Score=66.58 Aligned_cols=158 Identities=16% Similarity=0.131 Sum_probs=90.9
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh--------
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-------- 281 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-------- 281 (489)
.+.+.+...+.|...+-.- + -.-|.++.|+|-+|||||.+.+.+.+.++.+.+.+++-+...-
T Consensus 7 ~v~~Re~qi~~L~~Llg~~---~------~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 7 NVPCRESQIRRLKSLLGNN---S------CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred CccchHHHHHHHHHHhCCC---C------cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHH
Confidence 4566677777777765321 1 1235678999999999999999999999999999987554311
Q ss_pred -------hccch----HHHHHH---HHHH---HHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc
Q 011305 282 -------WRGDS----EKLIKV---LFEL---ARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ 343 (489)
Q Consensus 282 -------~~g~~----~~~l~~---lf~~---A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~ 343 (489)
+.|.. ...+.. .|.+ +... +.-.|++|.+|.+... ...++..++..-+-. +
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~----------~a~ll~~l~~L~el~-~ 146 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDM----------DAILLQCLFRLYELL-N 146 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhcc----------chHHHHHHHHHHHHh-C
Confidence 11111 111221 2222 2222 2458889999998521 123444454433322 2
Q ss_pred CCCcEEEEEEeCCCCcccHHHHh----hcccccccCCCCHHHHHHHHHHhcC
Q 011305 344 SDELVFVLAATNLPWELDAAMLR----RLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~r----Rf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
.+ .+.++...-.+. ..... --...++||.|+.++-..|+..--.
T Consensus 147 ~~-~i~iils~~~~e---~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 147 EP-TIVIILSAPSCE---KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred CC-ceEEEEeccccH---HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 22 233332222211 11221 1235689999999999998876543
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=62.47 Aligned_cols=71 Identities=23% Similarity=0.302 Sum_probs=41.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcE-------------EEEeccchhhhhcc---chHHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTF-------------FNISASSVVSKWRG---DSEKLIKVLFELARH 299 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el-----~~~~-------------i~v~~s~l~~~~~g---~~~~~l~~lf~~A~~ 299 (489)
..+.++|.||.|+||||+.|.++... |.++ ..++..+-.....+ .....+..+++.+..
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~~~ 103 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKAKK 103 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhccC
Confidence 34678999999999999999998533 4332 11111111000000 011335555655554
Q ss_pred cCCcEEEEchhh
Q 011305 300 HAPSTIFLDEID 311 (489)
Q Consensus 300 ~~p~VL~IDEiD 311 (489)
..|.+|++||.-
T Consensus 104 ~~p~llllDEp~ 115 (199)
T cd03283 104 GEPVLFLLDEIF 115 (199)
T ss_pred CCCeEEEEeccc
Confidence 578999999973
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00029 Score=70.09 Aligned_cols=98 Identities=21% Similarity=0.262 Sum_probs=59.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEec-cchh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~-s~l~ 279 (489)
...+++++.-.....+.+.+.+....+ ...++++.||+||||||+++++...+. ..++.+-- .++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~ 168 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELR 168 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S-
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhccccccceEEecccccee
Confidence 344677776666666666666554322 247899999999999999999999883 34444432 1221
Q ss_pred hhhc-------cchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 280 SKWR-------GDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 280 ~~~~-------g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
-... .........++..+....|.+|++.|+-
T Consensus 169 l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 169 LPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp -SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred ecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1100 0122335566777778889999999994
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00016 Score=66.56 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 2 ~~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 2 KNIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 36999999999999999999999999987654
|
|
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.015 Score=61.09 Aligned_cols=35 Identities=23% Similarity=0.212 Sum_probs=27.6
Q ss_pred cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC
Q 011305 359 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 359 ~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
.|..++-.|.-+.|.+...+.+.-+..+...+...
T Consensus 198 ~LskaLPn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 198 PLSKALPNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred hHHHhCCCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 37777777666889999999998888888888654
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00098 Score=57.38 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
++++++||+|+|||+++-.++.++
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 368999999999999998888876
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00018 Score=67.14 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999887654
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0023 Score=63.30 Aligned_cols=45 Identities=27% Similarity=0.247 Sum_probs=31.9
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+..+.+.......+...+.. ...+++.||+|||||++|.+++.+
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~--------------~~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES--------------KQLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc--------------CCeEEEECCCCCCHHHHHHHHHHH
Confidence 344566665555555554421 247899999999999999999985
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00041 Score=66.07 Aligned_cols=67 Identities=21% Similarity=0.298 Sum_probs=42.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec-cchhhh---------hccchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVVSK---------WRGDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~----~~~i~v~~-s~l~~~---------~~g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
-+++.||+|+||||++++++..+. ..++.+.. .++... .++.........+..+....|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 478999999999999999998874 22332221 111100 0111112244455666667899999999
Q ss_pred h
Q 011305 310 I 310 (489)
Q Consensus 310 i 310 (489)
+
T Consensus 83 i 83 (198)
T cd01131 83 M 83 (198)
T ss_pred C
Confidence 8
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >KOG2383 consensus Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=67.11 Aligned_cols=28 Identities=39% Similarity=0.587 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..+|+|++|||.-|||||+|.-.....+
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~~ 138 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDAL 138 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhcC
Confidence 3568999999999999999999887654
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00066 Score=67.70 Aligned_cols=92 Identities=16% Similarity=0.204 Sum_probs=57.7
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-ccchhhhh
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVSKW 282 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~-~s~l~~~~ 282 (489)
.++++.-.+...+.+++++.. +...++|.||+|+||||+++++...+. ..++.+. ..++.-..
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~ 124 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPG 124 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCC
Confidence 456665556666666665432 224589999999999999999988773 3344442 12221110
Q ss_pred ------ccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 283 ------RGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 283 ------~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..............+....|.+|+++|+.
T Consensus 125 ~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 125 INQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred ceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 01111234556667777899999999994
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK00625 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=66.48 Aligned_cols=31 Identities=39% Similarity=0.559 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+|+|.|.||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999988765
|
|
| >PRK04328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0037 Score=61.76 Aligned_cols=38 Identities=21% Similarity=0.283 Sum_probs=29.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.+++..+|++||||||||+++..++.+. |.+.++++.
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ 59 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVAL 59 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45667889999999999999998876542 566666654
|
|
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00023 Score=64.06 Aligned_cols=31 Identities=29% Similarity=0.525 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+++|+|+||+|||++|+.+|+.++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999887544
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0017 Score=69.77 Aligned_cols=79 Identities=24% Similarity=0.326 Sum_probs=54.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------cc--------hHHHHHHHHHHHHhc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------GD--------SEKLIKVLFELARHH 300 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g~--------~~~~l~~lf~~A~~~ 300 (489)
+..++.-++|.|+||+|||+++..++... +.++++++..+-..... |- .+..+..+.......
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 35666789999999999999999998765 45788888754332110 10 011234455566667
Q ss_pred CCcEEEEchhhhHHhh
Q 011305 301 APSTIFLDEIDAIISQ 316 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~ 316 (489)
+|.+|+||.+..+...
T Consensus 170 ~~~~vVIDSIq~l~~~ 185 (454)
T TIGR00416 170 NPQACVIDSIQTLYSP 185 (454)
T ss_pred CCcEEEEecchhhccc
Confidence 8999999999988643
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00022 Score=64.25 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.++|++|-||||||+++..+|..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 58999999999999999999999999888764
|
|
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0097 Score=60.47 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++..+.|+|+=|+|||++.+.+-+++...
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 356789999999999999999999988444
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=62.29 Aligned_cols=135 Identities=11% Similarity=0.191 Sum_probs=75.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE--EEEeccchhhhh--------cc------chHHHH-------HHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF--FNISASSVVSKW--------RG------DSEKLI-------KVLFE 295 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~--i~v~~s~l~~~~--------~g------~~~~~l-------~~lf~ 295 (489)
...+-.+++.|++|||||+++..+...+...+ +.+-+......+ +. +.+..+ .....
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 34456899999999999999999988774322 222221111111 10 011111 11111
Q ss_pred HHHh---cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccc
Q 011305 296 LARH---HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 296 ~A~~---~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i 372 (489)
.... ..+.+|++||+..- . .-...+..++. ..+.-++.+|..+.....+++.++.-.+..+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~~----------~-~k~~~l~~~~~-----~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i 153 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGDK----------K-LKSKILRQFFN-----NGRHYNISIIFLSQSYFHLPPNIRSNIDYFI 153 (241)
T ss_pred hhcccCCCCCeEEEEeCCCCc----------h-hhhHHHHHHHh-----cccccceEEEEEeeecccCCHHHhhcceEEE
Confidence 1111 22579999997320 0 01122333332 2333457788888888899999988777767
Q ss_pred ccCCCCHHHHHHHHHHhc
Q 011305 373 LVPLPDTEARRAMFESLL 390 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l 390 (489)
.+. .+.....-|++.+.
T Consensus 154 ~~~-~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 154 IFN-NSKRDLENIYRNMN 170 (241)
T ss_pred Eec-CcHHHHHHHHHhcc
Confidence 665 46666666666543
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0023 Score=59.52 Aligned_cols=70 Identities=14% Similarity=0.225 Sum_probs=47.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHH--------------------HHHHHHHHHHhcCCc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEK--------------------LIKVLFELARHHAPS 303 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~--------------------~l~~lf~~A~~~~p~ 303 (489)
.+|+.|+||||||++|..++..++.+++++........ +..+ .+..++... ..++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~---e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~-~~~~~ 78 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDD---EMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD-AAPGR 78 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChH---HHHHHHHHHHhcCCCCCeEecccccHHHHHHhh-cCCCC
Confidence 58999999999999999999999888777766543211 1111 122333221 13357
Q ss_pred EEEEchhhhHHhhh
Q 011305 304 TIFLDEIDAIISQR 317 (489)
Q Consensus 304 VL~IDEiD~l~~~r 317 (489)
+++||-+..+..+.
T Consensus 79 ~VlID~Lt~~~~n~ 92 (170)
T PRK05800 79 CVLVDCLTTWVTNL 92 (170)
T ss_pred EEEehhHHHHHHHH
Confidence 89999999887653
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=61.18 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=59.37 Aligned_cols=72 Identities=14% Similarity=0.185 Sum_probs=47.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-hc----------------cchHHHHHHHHHHHHhcCCcEEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WR----------------GDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-~~----------------g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
+|+.|++|+|||++|..++...+.+.+++....-.+. +. .+....+...+... .++.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~--~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHRKRRPAHWRTIETPRDLVSALKEL--DPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc--CCCCEEEE
Confidence 6899999999999999999988778888765432211 00 11222333333221 14679999
Q ss_pred chhhhHHhhhc
Q 011305 308 DEIDAIISQRG 318 (489)
Q Consensus 308 DEiD~l~~~r~ 318 (489)
|-+..+....-
T Consensus 80 Dclt~~~~n~l 90 (169)
T cd00544 80 DCLTLWVTNLL 90 (169)
T ss_pred EcHhHHHHHhC
Confidence 99998877643
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0018 Score=60.02 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.++|.|++|+||||+++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988775
|
|
| >PRK09354 recA recombinase A; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0024 Score=65.87 Aligned_cols=78 Identities=24% Similarity=0.325 Sum_probs=52.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh-h---------------ccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-W---------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~-~---------------~g~~~~~l~~lf~~A~ 298 (489)
+++.++-++++||||||||+|+-.++.+. +...++++..+-... + +...+..+..+-...+
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~ 135 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVR 135 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 45666789999999999999999877544 677788876442211 0 1112233333333445
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...+.+|+||-+-.+.+
T Consensus 136 s~~~~lIVIDSvaaL~~ 152 (349)
T PRK09354 136 SGAVDLIVVDSVAALVP 152 (349)
T ss_pred cCCCCEEEEeChhhhcc
Confidence 56789999999999876
|
|
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00028 Score=65.61 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+-++|.|+||+||||+|+.+++.++.+++.++...+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 3568999999999999999999999888776655433
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00031 Score=65.90 Aligned_cols=36 Identities=31% Similarity=0.553 Sum_probs=29.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+++|.|||||||||+++.+|+.++.++ ++..++..+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHHHH
Confidence 589999999999999999999998655 555555544
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00071 Score=64.68 Aligned_cols=131 Identities=18% Similarity=0.170 Sum_probs=58.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
-++|+||+|||||.+|-++|++.|.|++..+.-.......-.+.+-...-+... .=++|||-..--+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~-----~RiyL~~r~l~~G~------- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGT-----RRIYLDDRPLSDGI------- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT------EEEES----GGG-S-------
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHccc-----ceeeeccccccCCC-------
Confidence 478999999999999999999999999999875554332211211111111111 13788765332111
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhh-----cc-cccccCCCCHHHHHHHHHHhc
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRR-----LE-KRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rR-----f~-~~i~~~~Pd~~eR~~IL~~~l 390 (489)
-...+....|+..++.+.. ...+++ -.-..+.+..-..++ |. ....+++|+.+.-..-.+...
T Consensus 71 -i~a~ea~~~Li~~v~~~~~-~~~~Il--EGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv 139 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSA-HGGLIL--EGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRV 139 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTT-SSEEEE--EE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHhccc-cCceEE--eCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHH
Confidence 1123344566777776655 333333 332223333323332 32 334567777766554444333
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0045 Score=58.86 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+..++.||||||||++++.+...+ +..++.+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 568899999999999999988766 5666666543
|
|
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0023 Score=60.79 Aligned_cols=24 Identities=50% Similarity=0.719 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-++|+|+||+|||++|+.+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 378999999999999999999983
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.014 Score=62.08 Aligned_cols=74 Identities=22% Similarity=0.300 Sum_probs=48.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh----------------h----ccchHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK----------------W----RGDSEKLIKVLFE 295 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~----------------~----~g~~~~~l~~lf~ 295 (489)
.++.-+++.||+|+||||++..+|..+ |..+..+++...... + .............
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~ 177 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALE 177 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHH
Confidence 345778999999999999888887754 566777766422111 0 0123334445556
Q ss_pred HHHhcCCcEEEEchhhhH
Q 011305 296 LARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 296 ~A~~~~p~VL~IDEiD~l 313 (489)
.++.....+|+||=.-.+
T Consensus 178 ~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 178 EAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHhcCCCEEEEeCCCCc
Confidence 666666789999977544
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00031 Score=65.40 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=28.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+++.|||||||||+|+.+|+.++. ..++.+++..+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~lr~ 36 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLLRA 36 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHHHH
Confidence 689999999999999999999985 55666666543
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0061 Score=58.86 Aligned_cols=40 Identities=23% Similarity=0.193 Sum_probs=31.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+.+++..+++.|+||+|||+++..++.+. +.+.++++..+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45667789999999999999999887643 67777777643
|
This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0015 Score=62.22 Aligned_cols=70 Identities=24% Similarity=0.302 Sum_probs=41.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh-------------ccchHHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW-------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~-------------~g~~~~~l~~lf~~A~ 298 (489)
|+-++|.||+|+||||.+--+|..+ +..+-.+++..... .| ..+........++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 4678999999999999998888866 44444444322210 00 0112334445555555
Q ss_pred hcCCcEEEEchhh
Q 011305 299 HHAPSTIFLDEID 311 (489)
Q Consensus 299 ~~~p~VL~IDEiD 311 (489)
.....+|+||=..
T Consensus 81 ~~~~D~vlIDT~G 93 (196)
T PF00448_consen 81 KKGYDLVLIDTAG 93 (196)
T ss_dssp HTTSSEEEEEE-S
T ss_pred hcCCCEEEEecCC
Confidence 5555799999764
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0037 Score=62.10 Aligned_cols=39 Identities=15% Similarity=0.265 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+.+++..++++||||||||+++..++.+. |.+.++++..
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45667789999999999999999887643 5677777653
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >PRK13949 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00034 Score=64.96 Aligned_cols=32 Identities=41% Similarity=0.599 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+.++|.|+||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 46999999999999999999999999888755
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.01 Score=59.39 Aligned_cols=37 Identities=22% Similarity=0.249 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+++.++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345778899999999999999998876 5566666554
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0068 Score=70.21 Aligned_cols=151 Identities=19% Similarity=0.236 Sum_probs=77.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc--chh-hhh------------cc---------------chHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS--SVV-SKW------------RG---------------DSEKLIKV 292 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s--~l~-~~~------------~g---------------~~~~~l~~ 292 (489)
+-++++||+|.|||+++...+...+ ++.-++.. +-. ..+ .+ .....+..
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQ 111 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHH
Confidence 5689999999999999999988776 55544432 100 000 00 00112223
Q ss_pred HHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH-HHHhhccc
Q 011305 293 LFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AMLRRLEK 370 (489)
Q Consensus 293 lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~-al~rRf~~ 370 (489)
++..... ..|.+|+|||++.+... .....+..|+..+ .....+|| ++.....+.- .+.- -+.
T Consensus 112 ~~~~l~~~~~~~~lvlDD~h~~~~~---------~~~~~l~~l~~~~-----~~~~~lv~-~sR~~~~~~~~~l~~-~~~ 175 (903)
T PRK04841 112 LFIELADWHQPLYLVIDDYHLITNP---------EIHEAMRFFLRHQ-----PENLTLVV-LSRNLPPLGIANLRV-RDQ 175 (903)
T ss_pred HHHHHhcCCCCEEEEEeCcCcCCCh---------HHHHHHHHHHHhC-----CCCeEEEE-EeCCCCCCchHhHHh-cCc
Confidence 3333322 56889999999887321 1122333344322 22334444 5544222221 1111 111
Q ss_pred ccccC----CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 371 RILVP----LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 371 ~i~~~----~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
.+.+. ..+.+|-.+++...+... ....++..+.+.|.|..
T Consensus 176 ~~~l~~~~l~f~~~e~~~ll~~~~~~~--~~~~~~~~l~~~t~Gwp 219 (903)
T PRK04841 176 LLEIGSQQLAFDHQEAQQFFDQRLSSP--IEAAESSRLCDDVEGWA 219 (903)
T ss_pred ceecCHHhCCCCHHHHHHHHHhccCCC--CCHHHHHHHHHHhCChH
Confidence 23333 558888888887655322 12234566666677654
|
|
| >PRK06217 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00038 Score=65.26 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.|+|.|+||+||||+++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999877654
|
|
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0041 Score=59.20 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~ 264 (489)
.++.-++|+||.|+|||++.+.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3345799999999999999999994
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00055 Score=64.19 Aligned_cols=35 Identities=34% Similarity=0.693 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
.++|.||||+||||+|+.|++. .++..++..++..
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~~r 36 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDILR 36 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHHhH
Confidence 5899999999999999999999 4556666555543
|
|
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0028 Score=63.76 Aligned_cols=63 Identities=27% Similarity=0.271 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----C-CcEEEEeccc
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----K-TTFFNISASS 277 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~-~~~i~v~~s~ 277 (489)
+.+.+.+.+.+...+........+...+..++|.||+|+||||++..+|..+ + ..+..+++..
T Consensus 167 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 167 EDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3455555555544332111111123345678999999999999999998866 3 5666666544
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00056 Score=68.35 Aligned_cols=68 Identities=25% Similarity=0.312 Sum_probs=43.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC----------CcEEEEe-ccchhhhhc-------cc------hHHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK----------TTFFNIS-ASSVVSKWR-------GD------SEKLIKVLFELAR 298 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~----------~~~i~v~-~s~l~~~~~-------g~------~~~~l~~lf~~A~ 298 (489)
.+++|.||+|+||||+.++++..+. .++..++ ..++...+. +. ...+...++..++
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i~ 191 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLIR 191 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHHH
Confidence 6899999999999999999999873 2222222 122221111 00 1112334666777
Q ss_pred hcCCcEEEEchh
Q 011305 299 HHAPSTIFLDEI 310 (489)
Q Consensus 299 ~~~p~VL~IDEi 310 (489)
...|.||++||+
T Consensus 192 ~~~P~villDE~ 203 (270)
T TIGR02858 192 SMSPDVIVVDEI 203 (270)
T ss_pred hCCCCEEEEeCC
Confidence 789999999996
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00054 Score=69.52 Aligned_cols=69 Identities=26% Similarity=0.366 Sum_probs=46.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec-cchhhh-------hccchHHHHHHHHHHHHhcCCcEEEEc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA-SSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLD 308 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~-s~l~~~-------~~g~~~~~l~~lf~~A~~~~p~VL~ID 308 (489)
..++++.||+|+||||+++++...+ +..++.+.- .++.-. ...........++..+....|..|++.
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iivG 211 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIVG 211 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 4689999999999999999999886 233443321 121100 001111145667788888999999999
Q ss_pred hh
Q 011305 309 EI 310 (489)
Q Consensus 309 Ei 310 (489)
|+
T Consensus 212 Ei 213 (299)
T TIGR02782 212 EV 213 (299)
T ss_pred cc
Confidence 99
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0059 Score=60.58 Aligned_cols=37 Identities=27% Similarity=0.233 Sum_probs=29.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
..+...++|.||||+|||+++..++..+ +.++++++.
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 5566779999999999999999887764 667777765
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0005 Score=64.47 Aligned_cols=36 Identities=25% Similarity=0.521 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..++++||||+||||+++.+|+.+|.+.+ ++.++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~i--s~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHL--STGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeE--ecccHHH
Confidence 46999999999999999999999987654 4555543
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00048 Score=61.31 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
+.+.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987765
|
|
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.00049 Score=61.99 Aligned_cols=28 Identities=32% Similarity=0.642 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
++|.|+||+||||+|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876653
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >PRK13948 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00062 Score=64.10 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=31.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.++.+++|.|.+|+|||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999998554
|
|
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00048 Score=64.53 Aligned_cols=34 Identities=35% Similarity=0.629 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
|+|.||||+||||+++.+|+.++.+++ +..++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHHH
Confidence 799999999999999999999987654 4445543
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.011 Score=62.09 Aligned_cols=58 Identities=26% Similarity=0.271 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.+++.+.+.+...+..+..+ ...++.++|.||+|+||||++..+|..+ +..+..+++
T Consensus 217 ~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~a 277 (436)
T PRK11889 217 EEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITT 277 (436)
T ss_pred HHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEec
Confidence 556666666655444332211 1234679999999999999999999877 445555554
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.00056 Score=65.82 Aligned_cols=31 Identities=32% Similarity=0.507 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..++|.||||+||||+++.+|+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999998776643
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0016 Score=68.00 Aligned_cols=76 Identities=22% Similarity=0.349 Sum_probs=45.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEEeccch----------------hhhhccchHHHHH---HHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT-----TFFNISASSV----------------VSKWRGDSEKLIK---VLFELA 297 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~-----~~i~v~~s~l----------------~~~~~g~~~~~l~---~lf~~A 297 (489)
+.-.+|.||||+|||+|++.|++.... ..+.+-..+. .+.+.......++ .++..|
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~A 248 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKA 248 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHH
Confidence 345899999999999999999997743 2222222121 1222223333333 333333
Q ss_pred Hh----cCCcEEEEchhhhHHhhh
Q 011305 298 RH----HAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 298 ~~----~~p~VL~IDEiD~l~~~r 317 (489)
+. .+..+|||||+..+....
T Consensus 249 e~~~e~G~dVlL~iDsItR~arAq 272 (416)
T PRK09376 249 KRLVEHGKDVVILLDSITRLARAY 272 (416)
T ss_pred HHHHHcCCCEEEEEEChHHHHHHH
Confidence 32 245799999999987653
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0011 Score=68.67 Aligned_cols=70 Identities=20% Similarity=0.253 Sum_probs=45.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEec-cchh---------hhhccchHHHHHHHHHHHHhcCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK----TTFFNISA-SSVV---------SKWRGDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~-s~l~---------~~~~g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
...+++.||+|+||||+++++...+. ..++.+.- .++. ...+|.........+..+....|.+|++
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~v 201 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVILI 201 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEEE
Confidence 35689999999999999999998774 23333321 1211 0011211122445566677789999999
Q ss_pred chhh
Q 011305 308 DEID 311 (489)
Q Consensus 308 DEiD 311 (489)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9993
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.075 Score=56.65 Aligned_cols=73 Identities=16% Similarity=0.226 Sum_probs=47.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh-------h---------c----cchHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK-------W---------R----GDSEKLIKVLFEL 296 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~-------~---------~----g~~~~~l~~lf~~ 296 (489)
++..+++.|++|+||||++..+|..+ |..+..+++...... + . .............
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 45779999999999999988888764 566777776532110 0 0 0122333455555
Q ss_pred HHhcCCcEEEEchhhhH
Q 011305 297 ARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 297 A~~~~p~VL~IDEiD~l 313 (489)
+....+.+|+||=.-.+
T Consensus 178 ~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHhcCCCEEEEeCCCcc
Confidence 65666679999977543
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0065 Score=57.09 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=18.6
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~ 264 (489)
++|+||.|+|||++.|.++.
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.004 Score=57.23 Aligned_cols=74 Identities=20% Similarity=0.129 Sum_probs=46.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhh--------hhcc-----chHHHHHHHHHHHHhcCCc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVS--------KWRG-----DSEKLIKVLFELARHHAPS 303 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~--------~~~g-----~~~~~l~~lf~~A~~~~p~ 303 (489)
..++..+.|.||+|+|||||.+.++.... .--+.++..++.. ..++ ......+-.+..+-...|.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 45667899999999999999999998652 1112333322110 0010 0112233445566677899
Q ss_pred EEEEchhhh
Q 011305 304 TIFLDEIDA 312 (489)
Q Consensus 304 VL~IDEiD~ 312 (489)
+|++||-..
T Consensus 103 illlDEP~~ 111 (163)
T cd03216 103 LLILDEPTA 111 (163)
T ss_pred EEEEECCCc
Confidence 999999854
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=63.51 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
..+..++|.||+|+|||++++.+++.+..
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 34567999999999999999999998754
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00054 Score=62.59 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+-+.|||||||||+|+.+|+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5688999999999999999999999874
|
|
| >COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0084 Score=57.37 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=74.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh---------------------------------h
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---------------------------------W 282 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---------------------------------~ 282 (489)
.+.+.-+++.|+.|||||.+.+.++.-+ +....+++...-... .
T Consensus 25 iP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~ 104 (235)
T COG2874 25 IPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWG 104 (235)
T ss_pred CccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccC
Confidence 4555668999999999999999998744 444444432111000 0
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
.....+.++.+.+..+.+...|++||-+..++... +...+..++..+..+...+. +++ .|-+|+.+++
T Consensus 105 ~~~~~~~L~~l~~~~k~~~~dViIIDSls~~~~~~---------~~~~vl~fm~~~r~l~d~gK-vIi--lTvhp~~l~e 172 (235)
T COG2874 105 RRSARKLLDLLLEFIKRWEKDVIIIDSLSAFATYD---------SEDAVLNFMTFLRKLSDLGK-VII--LTVHPSALDE 172 (235)
T ss_pred hHHHHHHHHHHHhhHHhhcCCEEEEecccHHhhcc---------cHHHHHHHHHHHHHHHhCCC-EEE--EEeChhhcCH
Confidence 12344556677777777777999999998886542 12233445555554544443 433 3667888998
Q ss_pred HHHhhc
Q 011305 363 AMLRRL 368 (489)
Q Consensus 363 al~rRf 368 (489)
++.-|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 887766
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0075 Score=65.37 Aligned_cols=79 Identities=22% Similarity=0.262 Sum_probs=57.3
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc------c----------------------c
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR------G----------------------D 285 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~------g----------------------~ 285 (489)
++..++..+|+.||||+|||+++-.++.+. |-+.++++..+-..... | .
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 346777889999999999999999998865 56777776544321110 0 1
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 286 SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 286 ~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
.+..+..+.+......|.+|+||-+..+..
T Consensus 338 ~~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 338 LEDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred hHHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 245566677777778899999999988754
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0019 Score=63.60 Aligned_cols=34 Identities=26% Similarity=0.510 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
|+|.|+||+||||+|+.+++.+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 6899999999999999999987 466777765444
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.00056 Score=62.57 Aligned_cols=32 Identities=28% Similarity=0.562 Sum_probs=26.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+++.||+|+||||+|+.+++.++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 478999999999999999999986654 44443
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0042 Score=63.53 Aligned_cols=40 Identities=18% Similarity=0.236 Sum_probs=31.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+.+.+.-++|+||||||||+++-.+|... +..+++++..+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~ 146 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEG 146 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCC
Confidence 45666778999999999999999998763 34678887654
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=69.22 Aligned_cols=69 Identities=23% Similarity=0.291 Sum_probs=45.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEecc-chh-----------hhhccchHHHHHHHHHHHHhcCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK-----TTFFNISAS-SVV-----------SKWRGDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~-----~~~i~v~~s-~l~-----------~~~~g~~~~~l~~lf~~A~~~~p~VL 305 (489)
..+|+.||+|+||||+++++.+.+. ..++.+.-. ++. ...+|............+....|.+|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988772 345544321 211 00112111234456667777899999
Q ss_pred EEchhh
Q 011305 306 FLDEID 311 (489)
Q Consensus 306 ~IDEiD 311 (489)
++.|+-
T Consensus 230 ~vGEiR 235 (372)
T TIGR02525 230 GVGEIR 235 (372)
T ss_pred eeCCCC
Confidence 999993
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0013 Score=61.88 Aligned_cols=71 Identities=27% Similarity=0.408 Sum_probs=45.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEecc-chhhh---hc----------cchHHHHHHHHHHHHhcCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK---WR----------GDSEKLIKVLFELARHHAPS 303 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s-~l~~~---~~----------g~~~~~l~~lf~~A~~~~p~ 303 (489)
.....++|.||+|+||||++++++..+. ...+.+... ++... +. +........++..+....|.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd 102 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPD 102 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCC
Confidence 3457899999999999999999998763 223322211 11100 00 11123355666677778899
Q ss_pred EEEEchh
Q 011305 304 TIFLDEI 310 (489)
Q Consensus 304 VL~IDEi 310 (489)
++++.|+
T Consensus 103 ~i~igEi 109 (186)
T cd01130 103 RIIVGEV 109 (186)
T ss_pred EEEEEcc
Confidence 9999999
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00058 Score=63.33 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+++|.|++|+||||+.+++|+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999998655
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0017 Score=66.80 Aligned_cols=70 Identities=24% Similarity=0.349 Sum_probs=47.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEe-ccchhh-h------------hccchHHHHHHHHHHHHhcCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVS-K------------WRGDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~-~s~l~~-~------------~~g~~~~~l~~lf~~A~~~~p~VL 305 (489)
..++++.|++|+||||+++++...+. ..++.+- ..++.- . ..+...-....++..+....|.+|
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~PD~I 239 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLRPDRI 239 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccCCCeE
Confidence 47899999999999999999999873 3333331 112211 0 011122235677888888999999
Q ss_pred EEchhh
Q 011305 306 FLDEID 311 (489)
Q Consensus 306 ~IDEiD 311 (489)
++.|+-
T Consensus 240 ivGEiR 245 (332)
T PRK13900 240 IVGELR 245 (332)
T ss_pred EEEecC
Confidence 999993
|
|
| >PRK03731 aroL shikimate kinase II; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00079 Score=62.09 Aligned_cols=32 Identities=28% Similarity=0.465 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
..++|.|++|+|||++++.+|+.++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 46899999999999999999999999987543
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0082 Score=63.90 Aligned_cols=36 Identities=28% Similarity=0.336 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASS 277 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~ 277 (489)
++.++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4678999999999999999887754 35666676654
|
|
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.002 Score=63.49 Aligned_cols=38 Identities=24% Similarity=0.475 Sum_probs=30.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
...++|.||||+||+|+++.+|+.++. ..++..++...
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~--~his~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCL--CHLATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCC--cEEchhHHHHH
Confidence 467999999999999999999999985 45566666543
|
|
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0057 Score=62.26 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=31.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-++++||||+|||+++-.+|... +...++|+..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 35566778999999999999999998763 34788888655
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0052 Score=62.66 Aligned_cols=72 Identities=24% Similarity=0.383 Sum_probs=46.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEe-ccchhhh---h---------ccchHHHHHHHHHHHHhcCCcE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNIS-ASSVVSK---W---------RGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~-~s~l~~~---~---------~g~~~~~l~~lf~~A~~~~p~V 304 (489)
....++++.||+|+||||++++++..+. ...+.+. ..++.-. . .+...-....++..+....|.+
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~pd~ 221 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMRPDR 221 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCCCCe
Confidence 3457999999999999999999998773 2222221 1111100 0 0111223456777777889999
Q ss_pred EEEchhh
Q 011305 305 IFLDEID 311 (489)
Q Consensus 305 L~IDEiD 311 (489)
|++||+-
T Consensus 222 ii~gE~r 228 (308)
T TIGR02788 222 IILGELR 228 (308)
T ss_pred EEEeccC
Confidence 9999994
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00082 Score=62.69 Aligned_cols=34 Identities=29% Similarity=0.405 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
++.-|++.|++|||||++++.+++.++.+++..+
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 4467889999999999999999999988776543
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0071 Score=57.50 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=19.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVA 263 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA 263 (489)
+.++|+||.|+|||++.+.++
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999998
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0028 Score=57.45 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=28.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
++|.|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 6899999999999999999998 666777765444
|
The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate. |
| >PTZ00088 adenylate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00085 Score=65.47 Aligned_cols=36 Identities=28% Similarity=0.541 Sum_probs=29.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..++|.||||+||||+|+.+|+.++.+++. ..++..
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is--~gdllr 42 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHIN--MGNILR 42 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEE--CChHHH
Confidence 459999999999999999999999876654 445543
|
|
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0024 Score=68.66 Aligned_cols=184 Identities=23% Similarity=0.268 Sum_probs=96.1
Q ss_pred CCCCCCCchHHHHHHHHHhh-hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCC
Q 011305 177 KPLLPNFDSAETRALAESLC-RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGT 253 (489)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGt 253 (489)
+...|.+...+...+..... +.+...-...---.|.|.+.+|+.+.-++.--.. ....++ +...-++|+.|.|-+
T Consensus 268 ke~~~~~t~~Di~~i~klsk~kdiFdlLa~SLAPSI~GH~~vKkAillLLlGGvE--k~L~NGshlRGDINiLlvGDPSv 345 (818)
T KOG0479|consen 268 KEAAPDFTDEDIRNIKKLSKKKDIFDLLARSLAPSIYGHDYVKKAILLLLLGGVE--KNLENGSHLRGDINILLVGDPSV 345 (818)
T ss_pred ccccccCChhhHHHHHHHHhcCCHHHHHhhccCcccccHHHHHHHHHHHHhccce--eccCCCceeccceeEEEecCchH
Confidence 34456676666554433211 1111111111123789999999998865543221 112222 333457999999999
Q ss_pred cHHHHHHHHHHHhCCcEEEEec-cc---h---hhhhccchHHHHHH-HHHHHHhcCCcEEEEchhhhHHhhhcccchhhH
Q 011305 254 GKTMLAKAVATECKTTFFNISA-SS---V---VSKWRGDSEKLIKV-LFELARHHAPSTIFLDEIDAIISQRGEARSEHE 325 (489)
Q Consensus 254 GKT~lAralA~el~~~~i~v~~-s~---l---~~~~~g~~~~~l~~-lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~ 325 (489)
.||.|.|.+.+.....+-.... ++ | +..-....++.+.. ..-.|. .+|++|||+|.+..-
T Consensus 346 AKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGERRLEAGAMVLAD---RGVVCIDEFDKMsDi--------- 413 (818)
T KOG0479|consen 346 AKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGERRLEAGAMVLAD---RGVVCIDEFDKMSDI--------- 413 (818)
T ss_pred HHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccchhhhhcCceEEcc---CceEEehhcccccch---------
Confidence 9999999998865222111100 00 0 00001122333221 111122 379999999998422
Q ss_pred HHHHHHHHHHHHh------cCC-ccCCCcEEEEEEeCCCCc-------------ccHHHHhhcccccccC
Q 011305 326 ASRRLKTELLIQM------DGL-TQSDELVFVLAATNLPWE-------------LDAAMLRRLEKRILVP 375 (489)
Q Consensus 326 ~~~~i~~~LL~~l------dg~-~~~~~~viVIatTn~p~~-------------Ld~al~rRf~~~i~~~ 375 (489)
.+....+.+.+= -|+ ..-+.+.-|++++|..+. |+..+++||+..+.+-
T Consensus 414 -DRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~l 482 (818)
T KOG0479|consen 414 -DRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVL 482 (818)
T ss_pred -hHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEEEEEe
Confidence 122222222221 122 123445778999986642 7889999998755443
|
|
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0051 Score=62.88 Aligned_cols=40 Identities=18% Similarity=0.185 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-+.|+||||+|||+++..+|-.. +...++++..+
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~ 140 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEG 140 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCC
Confidence 45666778999999999999998877422 45778887654
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0012 Score=67.20 Aligned_cols=36 Identities=25% Similarity=0.456 Sum_probs=32.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
..+...|+|.|++|||||++++.+|+.+|.+++.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 566788999999999999999999999999998433
|
|
| >PRK13946 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00071 Score=63.55 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
++.|+|.|++|||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 367999999999999999999999999987655
|
|
| >PRK05057 aroK shikimate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00095 Score=62.10 Aligned_cols=34 Identities=26% Similarity=0.613 Sum_probs=29.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
...|+|.|++|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999998876653
|
|
| >PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II [] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0056 Score=61.24 Aligned_cols=70 Identities=27% Similarity=0.286 Sum_probs=38.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh---hh-ccchHHHHHH----HHHHHHhcCCcEEEEchhhhH
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---KW-RGDSEKLIKV----LFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~---~~-~g~~~~~l~~----lf~~A~~~~p~VL~IDEiD~l 313 (489)
|+|+|-||+|||++|+.|+..+ +..+..++...+.- .| ....++.++. .+..+.... .|+++|+...+
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~-~iVI~Dd~nYi 82 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKD-TIVILDDNNYI 82 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT--SEEEE-S---S
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccC-eEEEEeCCchH
Confidence 7899999999999999999976 56777777544431 12 1223444443 333333333 79999999776
Q ss_pred Hh
Q 011305 314 IS 315 (489)
Q Consensus 314 ~~ 315 (489)
-+
T Consensus 83 Kg 84 (270)
T PF08433_consen 83 KG 84 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A. |
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.00084 Score=63.27 Aligned_cols=35 Identities=29% Similarity=0.579 Sum_probs=29.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
+.+++.||||+||||+++.+++.++.+.+. ..++.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is--~~~~l 36 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS--TGDIL 36 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee--CCHHH
Confidence 468999999999999999999999877654 44543
|
|
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.08 Score=52.96 Aligned_cols=89 Identities=22% Similarity=0.293 Sum_probs=55.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHH
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 289 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~ 289 (489)
+|+-.+++.+-+..+... +..|..+.||.|.+|+||++++|..|.-.+..++.+..+.-.+ ..+....
T Consensus 9 ~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~~y~--~~~f~~d 76 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITKGYS--IKDFKED 76 (268)
T ss_dssp -----HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTSTTTH--HHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeCCcC--HHHHHHH
Confidence 455556666666654332 1245678999999999999999999999999999887543211 1234455
Q ss_pred HHHHHHHHH-hcCCcEEEEchh
Q 011305 290 IKVLFELAR-HHAPSTIFLDEI 310 (489)
Q Consensus 290 l~~lf~~A~-~~~p~VL~IDEi 310 (489)
++.++..|- ..+|.+++|+|-
T Consensus 77 Lk~~~~~ag~~~~~~vfll~d~ 98 (268)
T PF12780_consen 77 LKKALQKAGIKGKPTVFLLTDS 98 (268)
T ss_dssp HHHHHHHHHCS-S-EEEEEECC
T ss_pred HHHHHHHHhccCCCeEEEecCc
Confidence 666666655 455778887654
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.012 Score=62.29 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASS 277 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~ 277 (489)
+..++|.||+|+||||++..+|..+ |..+..+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 3568899999999999999999754 44455555433
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.012 Score=60.22 Aligned_cols=61 Identities=25% Similarity=0.169 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHccccCc-hhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 215 ENAKRLLKEAVVMPIKYP-KYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~-~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.+++.+.+.+...+... ..+.....++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 445556665555443211 1111112345678899999999999999999877 455555554
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0068 Score=62.67 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-+.|+||||||||+++..+|-.. +..+++++...
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~ 170 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEG 170 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCC
Confidence 35666678899999999999999887432 35677777644
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0013 Score=72.37 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=41.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-ccch-----hhhhccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSV-----VSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~-~s~l-----~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..++|++|||||||||++++++..+. ..+..+. ..++ ...+.. ...........+....|.+|++||+-
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~~-~~~~~~~~~~~lLR~rPD~IivGEiR 334 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYSK-LEGSMEETADILLLVRPDYTIYDEMR 334 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEee-ccccHHHHHHHHHhhCCCEEEECCCC
Confidence 47899999999999999999998874 2232331 1122 111110 00011222333346779999999984
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0059 Score=56.45 Aligned_cols=28 Identities=36% Similarity=0.445 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++-.++|+||+|||||++.|++|.-.
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence 4566779999999999999999999855
|
|
| >COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0085 Score=62.43 Aligned_cols=100 Identities=23% Similarity=0.338 Sum_probs=69.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEeccchhhhhc------c--------chHHHHHHHHHHHHhcCC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWR------G--------DSEKLIKVLFELARHHAP 302 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el--~~~~i~v~~s~l~~~~~------g--------~~~~~l~~lf~~A~~~~p 302 (489)
.-++.-+|+-|.||.|||||.-.++..+ ..++++|++.+-..... | -.+..+..+.......+|
T Consensus 90 ~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~p 169 (456)
T COG1066 90 LVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEKP 169 (456)
T ss_pred cccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcCC
Confidence 4566778999999999999998888877 34799999876543321 1 134456778888888999
Q ss_pred cEEEEchhhhHHhhhc-ccchhhHHHHHHHHHHHHHh
Q 011305 303 STIFLDEIDAIISQRG-EARSEHEASRRLKTELLIQM 338 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~-~~~~~~~~~~~i~~~LL~~l 338 (489)
.+++||-|..+....- +....-...+....+|...-
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~A 206 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLA 206 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHH
Confidence 9999999999887642 22222223455555555543
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.012 Score=57.26 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=30.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
+..++.-++|.|+||+|||+++..++... +.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 35566789999999999999998887754 778877774
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0012 Score=67.61 Aligned_cols=69 Identities=22% Similarity=0.311 Sum_probs=46.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe-ccchhhhh------ccchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVSKW------RGDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~-~s~l~~~~------~g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
..++|+.|++|+||||+++++.... +..++.+- ..++.-.. .....-....++..+....|..|++.|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~PD~IivGE 223 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLRPDRIIVGE 223 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCCCCEEEEee
Confidence 4689999999999999999999876 23344332 22222110 011112355677778889999999999
Q ss_pred h
Q 011305 310 I 310 (489)
Q Consensus 310 i 310 (489)
+
T Consensus 224 i 224 (323)
T PRK13833 224 V 224 (323)
T ss_pred c
Confidence 9
|
|
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0025 Score=61.75 Aligned_cols=38 Identities=21% Similarity=0.189 Sum_probs=32.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
+.-|.+.|++|+||||+|+.|++.+ |.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999998 6778877766653
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.001 Score=61.89 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=28.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.-+++.|||||||||+++.+++.+|... ++..++.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~--~~~g~~~ 38 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTH--LSTGDLL 38 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcE--EeHHHHH
Confidence 4688999999999999999999987654 4554443
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0075 Score=56.50 Aligned_cols=73 Identities=22% Similarity=0.174 Sum_probs=43.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccch--hhhhc-cchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSV--VSKWR-GDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l--~~~~~-g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
.++..+.|.||.|+|||||++.++.... .--+.++...+ ..... =.....-+-.+..+-...|.++++||--.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts 100 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSA 100 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 4556789999999999999999998651 11122222111 00100 01112233344555567889999999854
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.011 Score=58.06 Aligned_cols=39 Identities=33% Similarity=0.359 Sum_probs=31.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++.++..+++.|+||+|||+++-.++.+. |.++++++..
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 46677789999999999999998887755 7777777654
|
|
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.001 Score=62.28 Aligned_cols=30 Identities=27% Similarity=0.547 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+++.||||+||||+++.+++.++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998765543
|
|
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0033 Score=63.38 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.-+++.|+|||||||+|+.+++.+. .++.++..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 4688999999999999999999983 2345554444
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0009 Score=57.88 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el 266 (489)
|+|.|+|||||||+|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
|
... |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.001 Score=63.73 Aligned_cols=34 Identities=32% Similarity=0.626 Sum_probs=27.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
|++.||||+||||+|+.+|+.++.+.+ +..++..
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i--s~gdllr 35 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI--STGDLLR 35 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee--ehhHHHH
Confidence 789999999999999999999987655 4445543
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0043 Score=67.95 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=25.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++++..+|+.||+|||||++.|++|.-+
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5677889999999999999999999965
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0013 Score=64.30 Aligned_cols=39 Identities=18% Similarity=0.306 Sum_probs=32.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.+..+++.|||||||||+|+.+|+.+|.+ .++++++...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 34578999999999999999999999864 5777777644
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.002 Score=51.80 Aligned_cols=33 Identities=33% Similarity=0.496 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHh------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKT-MLAKAVATEC------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT-~lAralA~el------~~~~i~v~~ 275 (489)
.-+++.|||||||| ++++.++... +..++.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAP 50 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 34667999999999 5566666555 344555543
|
|
| >PTZ00035 Rad51 protein; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.009 Score=61.70 Aligned_cols=40 Identities=25% Similarity=0.326 Sum_probs=30.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
+...+.-+.|+||||+|||+++..++... +...++++...
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 45666778999999999999999987533 34566777544
|
|
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0069 Score=62.18 Aligned_cols=35 Identities=26% Similarity=0.552 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
.|+|+||||+|||++++.|++.++.+. ++..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~--is~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQ--LSTGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--ecccHHHH
Confidence 489999999999999999999998744 45455543
|
|
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0012 Score=63.53 Aligned_cols=34 Identities=29% Similarity=0.595 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.|+++||||+||||+++.+|+.++.+.+. ..++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccH
Confidence 48999999999999999999999865554 44444
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.014 Score=53.35 Aligned_cols=33 Identities=21% Similarity=0.405 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHhC----CcEEEEec
Q 011305 243 KGILLFGPPGTGKTM-LAKAVATECK----TTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~-lAralA~el~----~~~i~v~~ 275 (489)
+++++.||+|||||+ ++..+...+. ..++.+..
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p 62 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVP 62 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeC
Confidence 689999999999999 5555555443 33555544
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.003 Score=67.43 Aligned_cols=93 Identities=22% Similarity=0.148 Sum_probs=55.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec-c---chhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA-S---SVVSK 281 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~-s---~l~~~ 281 (489)
.+++++.......+.+.+.+.. |..-+|++||+|+||||+..++.++++.+...|-. . +..-.
T Consensus 235 l~l~~Lg~~~~~~~~~~~~~~~-------------p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~ 301 (500)
T COG2804 235 LDLEKLGMSPFQLARLLRLLNR-------------PQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLP 301 (500)
T ss_pred CCHHHhCCCHHHHHHHHHHHhC-------------CCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecC
Confidence 4456666666666666665532 22347889999999999999999999655432221 1 11111
Q ss_pred hccch------HHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 282 WRGDS------EKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 282 ~~g~~------~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.+.+. .-.....++......|.||++.||-
T Consensus 302 gI~Q~qVN~k~gltfa~~LRa~LRqDPDvImVGEIR 337 (500)
T COG2804 302 GINQVQVNPKIGLTFARALRAILRQDPDVIMVGEIR 337 (500)
T ss_pred CcceeecccccCCCHHHHHHHHhccCCCeEEEeccC
Confidence 11110 0011234445556789999999994
|
|
| >TIGR02239 recomb_RAD51 DNA repair protein RAD51 | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0077 Score=61.63 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=30.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh------C---CcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC------K---TTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el------~---~~~i~v~~s~ 277 (489)
++.+..-+.++||||+|||+++..++... + ...++++..+
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 45666778999999999999999988632 1 3567777655
|
This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). |
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0011 Score=62.52 Aligned_cols=37 Identities=30% Similarity=0.500 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.-+++.||||+||||+|+.+++.++...+ +..++.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i--s~gd~~ 41 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELGLKKL--STGDIL 41 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCCCC--CccHHH
Confidence 3467999999999999999999999986544 344444
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0043 Score=67.13 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=58.5
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEec-cchhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVVS 280 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~-s~l~~ 280 (489)
..+++++.-.++..+.++..+.. +..-++++||+|+||||+..++.+++. ..++.+-- .++.-
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~~-------------~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~ 284 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIRR-------------PHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQI 284 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeec
Confidence 44677776667777777765532 223478999999999999998888774 33444421 11111
Q ss_pred hhccc------hHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 281 KWRGD------SEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 281 ~~~g~------~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..+.+ ...........+....|.||++.|+-
T Consensus 285 ~~~~q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEiR 321 (486)
T TIGR02533 285 EGIGQIQVNPKIGLTFAAGLRAILRQDPDIIMVGEIR 321 (486)
T ss_pred CCCceEEEccccCccHHHHHHHHHhcCCCEEEEeCCC
Confidence 11111 11123345556667889999999994
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0059 Score=56.39 Aligned_cols=33 Identities=33% Similarity=0.360 Sum_probs=27.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
-+++.||||+|||++++.++..+ +..+..+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 36899999999999999999876 5667777765
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.01 Score=53.87 Aligned_cols=74 Identities=27% Similarity=0.353 Sum_probs=45.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEeccchhh-------hhcc-----chHHHHHHHHHHHHhcCCcE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVS-------KWRG-----DSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~--~i~v~~s~l~~-------~~~g-----~~~~~l~~lf~~A~~~~p~V 304 (489)
..++..+.|.||+|+|||+++++++..+... -+.++...+.. ...+ ......+-.+..+-...|.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 4566789999999999999999999876311 13333322110 0000 01112223345555567899
Q ss_pred EEEchhhh
Q 011305 305 IFLDEIDA 312 (489)
Q Consensus 305 L~IDEiD~ 312 (489)
+++||...
T Consensus 102 ~ilDEp~~ 109 (157)
T cd00267 102 LLLDEPTS 109 (157)
T ss_pred EEEeCCCc
Confidence 99999964
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.013 Score=54.42 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566789999999999999999999875
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0016 Score=61.63 Aligned_cols=30 Identities=23% Similarity=0.372 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC--KTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el--~~~~i 271 (489)
+..++++|+|||||||+++.+++.+ +.+++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~ 33 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV 33 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE
Confidence 3578999999999999999999999 55543
|
|
| >PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases [] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.03 Score=51.54 Aligned_cols=132 Identities=17% Similarity=0.189 Sum_probs=71.5
Q ss_pred EcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHH
Q 011305 248 FGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEAS 327 (489)
Q Consensus 248 ~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~ 327 (489)
.+.+||||||++.++++-++- +-.|.-.++.++ ...+.++.+.+........++|+|==......|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k---~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR---------- 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK---RKPKFIKAVLELLAKDTHPVVIADRNNHQKRER---------- 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC---CHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHH----------
Confidence 578999999999999999873 333444455433 344556666666644455799998554443332
Q ss_pred HHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh--------hcc--cccccCCCCHHHHHHHHHHhcCCC
Q 011305 328 RRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--------RLE--KRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 328 ~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r--------Rf~--~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
+++.+.+-..-..+......+-+||-.-..+...+.+.+ |=+ ..|.....+...-..|++.++...
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rf 146 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRF 146 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhc
Confidence 122222222222222223345566555333332233333 322 223444446677777888877544
|
Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=62.60 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.4
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEecc
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISAS 276 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~e----l~~~~i~v~~s 276 (489)
++.++++.+|+.||||||||++|..++.+ .|.+.++|+..
T Consensus 16 GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e 59 (484)
T TIGR02655 16 GGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE 59 (484)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 34667788999999999999999988543 25677777653
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0085 Score=57.67 Aligned_cols=67 Identities=27% Similarity=0.293 Sum_probs=38.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--cch-hhhh-----c-cchHHHHHHHHHHH--HhcCCcEEEEchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSV-VSKW-----R-GDSEKLIKVLFELA--RHHAPSTIFLDEI 310 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--s~l-~~~~-----~-g~~~~~l~~lf~~A--~~~~p~VL~IDEi 310 (489)
+..++|||+||+|||++|..+ +.++ .++. +.. ...+ + =.+-..+...+... ......+|+||.+
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l-~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi 77 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPL-FIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI 77 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeE-EEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence 357999999999999999888 3333 3332 210 0000 0 01222233333332 2345679999988
Q ss_pred hhH
Q 011305 311 DAI 313 (489)
Q Consensus 311 D~l 313 (489)
+.+
T Consensus 78 s~~ 80 (213)
T PF13479_consen 78 SWL 80 (213)
T ss_pred HHH
Confidence 775
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.004 Score=66.86 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=60.0
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe-ccchhh
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS-ASSVVS 280 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~-~s~l~~ 280 (489)
..+++++.-.+...+.+++.+.. +..-+|++||+|+||||+..++..+++ ..++.+- ..++.-
T Consensus 194 ~~~L~~LG~~~~~~~~l~~~~~~-------------~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l 260 (462)
T PRK10436 194 ALDLETLGMTPAQLAQFRQALQQ-------------PQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPL 260 (462)
T ss_pred CCCHHHcCcCHHHHHHHHHHHHh-------------cCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccC
Confidence 34677887777777777776533 234588999999999999988877774 3344332 112111
Q ss_pred hh-----cc-chHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 281 KW-----RG-DSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 281 ~~-----~g-~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.. ++ .........+..+....|.||+|.|+-
T Consensus 261 ~gi~Q~~v~~~~g~~f~~~lr~~LR~dPDvI~vGEIR 297 (462)
T PRK10436 261 AGINQTQIHPKAGLTFQRVLRALLRQDPDVIMVGEIR 297 (462)
T ss_pred CCcceEeeCCccCcCHHHHHHHHhcCCCCEEEECCCC
Confidence 11 11 111234556666777899999999993
|
|
| >PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein [] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0048 Score=58.61 Aligned_cols=42 Identities=26% Similarity=0.325 Sum_probs=32.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeccchhhh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSK 281 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~s~l~~~ 281 (489)
..|.-+++.|+||+|||+++..+..++ +..++.++..++...
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~ 55 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQF 55 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHh
Confidence 345778999999999999999999998 788899998776544
|
It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D. |
| >PRK14526 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0046 Score=59.59 Aligned_cols=34 Identities=32% Similarity=0.639 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.++|.||||+||||+++.+|+.++.+. ++..++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 488999999999999999999988654 4455554
|
|
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.021 Score=62.24 Aligned_cols=78 Identities=22% Similarity=0.184 Sum_probs=51.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhh--------------hc----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSK--------------WR---------------- 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~--------------~~---------------- 283 (489)
+.+++..+|++|+||+|||+++..++.+. |.+.++++..+-... +.
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 35667889999999999999999876532 567777765332211 00
Q ss_pred ------cchHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 284 ------GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 284 ------g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
.+.+..+..+.+.....+|..++||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 01122344455555667889999999988754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0066 Score=56.16 Aligned_cols=28 Identities=29% Similarity=0.557 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4566789999999999999999999976
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0071 Score=66.88 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+|+..+-|.||+|+||||+|..+-+-.
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY 518 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFY 518 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5778899999999999999999998755
|
|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0075 Score=55.85 Aligned_cols=38 Identities=24% Similarity=0.283 Sum_probs=30.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
++..+.|.|+||+|||++++.++..+ +..+..++...+
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 34678999999999999999999987 445666766543
|
|
| >cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0025 Score=49.98 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCcEEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC-KTTFFNI 273 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el-~~~~i~v 273 (489)
+.+.|+||+|||++++++++.+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999986 2344433
|
Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.006 Score=69.22 Aligned_cols=100 Identities=19% Similarity=0.220 Sum_probs=55.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---C--CcEEEEeccch----hhhhccchHHHHHHHHHHHH----------hcCCc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSV----VSKWRGDSEKLIKVLFELAR----------HHAPS 303 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~--~~~i~v~~s~l----~~~~~g~~~~~l~~lf~~A~----------~~~p~ 303 (489)
+.++|.|+||||||++++++...+ + .+++.+..+.- .....|.....++.++.... .....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~~~~~~~~~~~~~~~~~~~ 418 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTIHRLLGYGPDTFRHNHLEDPIDCD 418 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccHHHHhhccCCccchhhhhccccCC
Confidence 468999999999999999997755 3 34443332211 11112222233444443210 12357
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
+|+|||+-.+. ..+...|+..+. .+..+++++-.+....
T Consensus 419 llIvDEaSMvd-------------~~~~~~Ll~~~~----~~~rlilvGD~~QLps 457 (720)
T TIGR01448 419 LLIVDESSMMD-------------TWLALSLLAALP----DHARLLLVGDTDQLPS 457 (720)
T ss_pred EEEEeccccCC-------------HHHHHHHHHhCC----CCCEEEEECccccccC
Confidence 99999996552 223455555432 3445666665555433
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0047 Score=55.67 Aligned_cols=72 Identities=21% Similarity=0.318 Sum_probs=43.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCC--cEEEEecc---chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKT--TFFNISAS---SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~--~~i~v~~s---~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
..++..+.|.||+|+||||+++.++..... --+.++.. .+..... ....-+-.+..+....|.++++||-..
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS--~G~~~rv~laral~~~p~illlDEP~~ 99 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLS--GGEKMRLALAKLLLENPNLLLLDEPTN 99 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 456678999999999999999999987521 01111111 0000011 112223334556667889999999854
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.0044 Score=57.95 Aligned_cols=29 Identities=41% Similarity=0.714 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
++.++|.||+|+|||++++.|.++....|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 46799999999999999999999886544
|
7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A .... |
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=63.39 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=45.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC----cEEEEec-cch--------h-hhhccchHHHHHHHHHHHHhcCCcEEEEch
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKT----TFFNISA-SSV--------V-SKWRGDSEKLIKVLFELARHHAPSTIFLDE 309 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~----~~i~v~~-s~l--------~-~~~~g~~~~~l~~lf~~A~~~~p~VL~IDE 309 (489)
=||++||+||||||..-++-.+.+. +++.+-- -++ . ..-+|.-.......++.|....|.||++-|
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT~sF~~aLraALReDPDVIlvGE 206 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDTLSFANALRAALREDPDVILVGE 206 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccHHHHHHHHHHHhhcCCCEEEEec
Confidence 3788999999999999999988853 3333321 111 1 122344444445566777788899999998
Q ss_pred hh
Q 011305 310 ID 311 (489)
Q Consensus 310 iD 311 (489)
+-
T Consensus 207 mR 208 (353)
T COG2805 207 MR 208 (353)
T ss_pred cc
Confidence 84
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.029 Score=51.63 Aligned_cols=29 Identities=24% Similarity=0.147 Sum_probs=22.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~ 272 (489)
-+.+|+++|.|||++|-.+|-.. |..+..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36788889999999999998766 544443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0032 Score=65.33 Aligned_cols=24 Identities=50% Similarity=0.632 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-+++.|.||||||.+|-.++.++
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 357899999999999999999988
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.013 Score=54.72 Aligned_cols=78 Identities=26% Similarity=0.362 Sum_probs=44.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh-------------CCcEEEEeccchhh----hhc---cc-------------
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC-------------KTTFFNISASSVVS----KWR---GD------------- 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el-------------~~~~i~v~~s~l~~----~~~---g~------------- 285 (489)
+..+.-++|.||||+|||+++-.++..+ +.++++++...-.. .+. +.
T Consensus 29 ~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 108 (193)
T PF13481_consen 29 LPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALLQDYDDDANLFFVDLS 108 (193)
T ss_dssp E-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHHTTS-HHHHHHHHHH-
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHhcccCCccceEEeecc
Confidence 4455668999999999999999998865 23567776532210 000 00
Q ss_pred ----------------hHHHHHHHHHHHHh-cCCcEEEEchhhhHHhh
Q 011305 286 ----------------SEKLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 286 ----------------~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~ 316 (489)
....+..+.+.+.. ..|.+|+||.+..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~ 156 (193)
T PF13481_consen 109 NWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDG 156 (193)
T ss_dssp -E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S
T ss_pred ccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcC
Confidence 12233445555555 56899999999999875
|
|
| >COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0017 Score=65.78 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=33.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
++-++|.||++||||-+|-.+|++++.+++.++...+-
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvY 40 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVY 40 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhc
Confidence 35689999999999999999999999999998875553
|
|
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0013 Score=60.84 Aligned_cols=30 Identities=30% Similarity=0.468 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.++++|.|||||||+++.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9998877665
|
|
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.011 Score=61.07 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=30.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
++.+..-++++|+||+|||+++..+|-.. +.+.++++..+
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~ 167 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEG 167 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCC
Confidence 35666678899999999999999887432 23678887655
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.047 Score=57.08 Aligned_cols=61 Identities=21% Similarity=0.211 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+.+.+.+.+.+...+..+..+. ..+++.++|.||+|+||||++..+|..+ +.++..+++.
T Consensus 180 ~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaD 243 (407)
T PRK12726 180 LDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD 243 (407)
T ss_pred HHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 46677777777766444333222 2456779999999999999999999866 5556556654
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.013 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
++..+++||.|+|||++.++++-.+
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~~ 45 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLAL 45 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999986543
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0025 Score=60.20 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+++-++|.||+|+|||++++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 45779999999999999999998875
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.002 Score=57.48 Aligned_cols=30 Identities=27% Similarity=0.252 Sum_probs=26.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++..++|.|+.|+|||+++|.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455679999999999999999999999864
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0014 Score=59.26 Aligned_cols=34 Identities=32% Similarity=0.558 Sum_probs=27.6
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 247 LFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 247 L~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
|.||||+|||++|+.||++++. ..++..++....
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~llr~~ 34 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLLREE 34 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHHHHH
Confidence 6899999999999999999975 566666665443
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=54.35 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++.-+.|.||.|+|||||.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 455677899999999999999999743
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0019 Score=66.72 Aligned_cols=70 Identities=24% Similarity=0.401 Sum_probs=46.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEec-cchhhh--------h----ccchHHHHHHHHHHHHhcCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISA-SSVVSK--------W----RGDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~-s~l~~~--------~----~g~~~~~l~~lf~~A~~~~p~VL 305 (489)
...++|+.||+|+||||++++++..+. ..++.+.- .++.-. + .+...-....++..+....|..|
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 457899999999999999999999873 23333211 122100 0 01112234567778888899999
Q ss_pred EEchh
Q 011305 306 FLDEI 310 (489)
Q Consensus 306 ~IDEi 310 (489)
++.|+
T Consensus 241 ivGEi 245 (344)
T PRK13851 241 LLGEM 245 (344)
T ss_pred EEEee
Confidence 99999
|
|
| >PRK04182 cytidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0019 Score=59.55 Aligned_cols=29 Identities=34% Similarity=0.551 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.|.|.|++|||||++++.+|+.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988764
|
|
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0068 Score=63.54 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++..++|.||||+|||++++.+++.+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 34556799999999999999999999863
|
Members of this family differ in the specificity of RNA binding. |
| >PRK01184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0019 Score=60.31 Aligned_cols=29 Identities=31% Similarity=0.424 Sum_probs=24.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
-++|+||||+||||+++ +++++|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58899999999999998 788888877544
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0027 Score=60.52 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=17.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el 266 (489)
.++.||||||||+++..+...+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777776655
|
|
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0057 Score=59.43 Aligned_cols=36 Identities=25% Similarity=0.524 Sum_probs=28.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.++|.||||+||||+++.+++.++.+.+ +..++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i--s~gdllr~ 37 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI--ESGAIFRE 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc--ccchhhhh
Confidence 4889999999999999999999987654 44455433
|
|
| >PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.014 Score=55.43 Aligned_cols=34 Identities=21% Similarity=0.441 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s 276 (489)
.|+|+.|++|+|||++++.++..+ ...++.++..
T Consensus 39 ~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 39 PHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp -SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred ceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 489999999999999999988766 3456666653
|
The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A. |
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.003 Score=64.65 Aligned_cols=70 Identities=23% Similarity=0.437 Sum_probs=46.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe-ccchhh---h---hccchHHHHHHHHHHHHhcCCcEEEEc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS-ASSVVS---K---WRGDSEKLIKVLFELARHHAPSTIFLD 308 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~-~s~l~~---~---~~g~~~~~l~~lf~~A~~~~p~VL~ID 308 (489)
...++++.|++|+||||++++++... ...++.+. ..++.- . +.....-....++..+....|..|++.
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 34789999999999999999999874 22333322 122210 0 001112235677888888999999999
Q ss_pred hh
Q 011305 309 EI 310 (489)
Q Consensus 309 Ei 310 (489)
|+
T Consensus 227 Ei 228 (319)
T PRK13894 227 EV 228 (319)
T ss_pred cc
Confidence 99
|
|
| >PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.0029 Score=58.04 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
..|.|+|.||+||||+|+++.+.+ +.+.+.+++..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 568899999999999999999987 7888888876654
|
Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B .... |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.024 Score=54.31 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+.-++|.||.|+|||++.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999974
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0042 Score=65.55 Aligned_cols=36 Identities=31% Similarity=0.466 Sum_probs=30.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..++|.||+|+|||+++..+|++++.+++..+...+
T Consensus 22 ~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qv 57 (421)
T PLN02840 22 KVIVISGPTGAGKSRLALELAKRLNGEIISADSVQV 57 (421)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccce
Confidence 458899999999999999999999988877765433
|
|
| >TIGR02173 cyt_kin_arch cytidylate kinase, putative | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0023 Score=58.55 Aligned_cols=29 Identities=38% Similarity=0.610 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
-|.++|++|+|||++|+.+++.++.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 37899999999999999999999988654
|
Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017. |
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.003 Score=58.56 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.++..++|.|++|+||||+++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999999885
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0064 Score=59.49 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++--|-|.||+|||||||.+.+|.-.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455668899999999999999999854
|
|
| >PRK09519 recA DNA recombination protein RecA; Reviewed | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=65.52 Aligned_cols=78 Identities=21% Similarity=0.301 Sum_probs=51.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEeccchhh-hh---------------ccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVVS-KW---------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~e---l~~~~i~v~~s~l~~-~~---------------~g~~~~~l~~lf~~A~ 298 (489)
+++++..++++||||||||+|+..++.. .|...++++..+-.. .+ ....+..+..+-...+
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 4566778999999999999999765543 367777777654222 00 0112233333333344
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...+.+|+||-+..+.+
T Consensus 136 ~~~~~LVVIDSI~aL~~ 152 (790)
T PRK09519 136 SGALDIVVIDSVAALVP 152 (790)
T ss_pred cCCCeEEEEcchhhhcc
Confidence 55789999999999986
|
|
| >TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0064 Score=62.50 Aligned_cols=37 Identities=30% Similarity=0.278 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
+.+.|.|+||+|||||++.++..++.+++.-.+.+..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~~~ 199 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAWEYAREYV 199 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHHHH
Confidence 5799999999999999999999999888655544443
|
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. |
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0061 Score=67.27 Aligned_cols=93 Identities=17% Similarity=0.175 Sum_probs=56.8
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEecc-chhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVVSK 281 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s-~l~~~ 281 (489)
.+++++.-.+...+.+++.+.. +...+|++||+|+||||+..++.+.++ .+++.+--. ++.-.
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~~-------------~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~ 359 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIHK-------------PQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLP 359 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHHh-------------cCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCC
Confidence 3456666566666666655432 224578999999999999998888774 234433211 11100
Q ss_pred h-----c-cchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 282 W-----R-GDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 282 ~-----~-g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
. + ..........+..+....|.||++.|+-
T Consensus 360 ~~~q~~v~~~~g~~~~~~l~~~LR~dPDvI~vGEiR 395 (564)
T TIGR02538 360 GINQVNVNPKIGLTFAAALRSFLRQDPDIIMVGEIR 395 (564)
T ss_pred CceEEEeccccCCCHHHHHHHHhccCCCEEEeCCCC
Confidence 0 0 0111224455666777899999999994
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >PLN02459 probable adenylate kinase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0086 Score=59.44 Aligned_cols=35 Identities=23% Similarity=0.393 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
..++|.||||+||||+++.+|+.++.+ .++..++.
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~--~is~gdll 64 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVP--HIATGDLV 64 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc--EEeCcHHH
Confidence 358889999999999999999999864 45555554
|
|
| >PF13521 AAA_28: AAA domain; PDB: 1LW7_A | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0022 Score=58.66 Aligned_cols=27 Identities=37% Similarity=0.519 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
|.|+|+||||||||++++++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 789999999999999999999 887663
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0029 Score=58.52 Aligned_cols=33 Identities=24% Similarity=0.296 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK-TTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~-~~~i~v~~ 275 (489)
.-|.+.|+||+||||+|+.++..++ .+++..+.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 4578899999999999999999985 44554443
|
|
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.037 Score=56.49 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=64.8
Q ss_pred CCcEEEEchhhhHHhhhcccchh----hHHHHHHHHHHHHHhcCCccCCCcEEE--EEEeCC---CC--cccHHHHhhcc
Q 011305 301 APSTIFLDEIDAIISQRGEARSE----HEASRRLKTELLIQMDGLTQSDELVFV--LAATNL---PW--ELDAAMLRRLE 369 (489)
Q Consensus 301 ~p~VL~IDEiD~l~~~r~~~~~~----~~~~~~i~~~LL~~ldg~~~~~~~viV--IatTn~---p~--~Ld~al~rRf~ 369 (489)
.|.++-||++..+.........+ +...=.+...|+..+.+-..-..+.+| +++|.. +. .++.++..+-.
T Consensus 156 ~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~~~~~l~~~L~~~~~ 235 (309)
T PF10236_consen 156 PPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAPKSPTLPVALGGKEG 235 (309)
T ss_pred CceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEeccccccccCCccchhhhccccC
Confidence 46788899999999874332111 111123455666665544332333433 445422 22 35555544321
Q ss_pred ---------------------cccccCCCCHHHHHHHHHHhcCCCCCCCCC---CHHHHHHHhcCCcHHHHH
Q 011305 370 ---------------------KRILVPLPDTEARRAMFESLLPSQTGEESL---PYDLLVERTEGYSGSDIR 417 (489)
Q Consensus 370 ---------------------~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~---dl~~La~~t~G~sg~Di~ 417 (489)
..+.++..+.+|-..+++.+....-+.... ...+--..+.|.+++++.
T Consensus 236 ~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 236 FPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred CCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 257888889999999999988766554321 122222234456777664
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.043 Score=58.31 Aligned_cols=72 Identities=18% Similarity=0.159 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh---------------h-hc----cchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS---------------K-WR----GDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~---------------~-~~----g~~~~~l~~lf~~A 297 (489)
++.-++|.|++|+||||++..+|..+ |..+..+++..... . +. .+........+..+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35678999999999999999999877 66666666633210 0 00 01122333445555
Q ss_pred HhcCCcEEEEchhhh
Q 011305 298 RHHAPSTIFLDEIDA 312 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~ 312 (489)
+.....+|+||=...
T Consensus 179 ~~~~~DvViIDTaGr 193 (429)
T TIGR01425 179 KKENFDIIIVDTSGR 193 (429)
T ss_pred HhCCCCEEEEECCCC
Confidence 555568999997744
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PRK10263 DNA translocase FtsK; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.027 Score=66.37 Aligned_cols=74 Identities=12% Similarity=0.264 Sum_probs=50.0
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--cccHHHHhhcccccccCCCCHHH
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 381 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~--~Ld~al~rRf~~~i~~~~Pd~~e 381 (489)
||+|||+..|..... +.+...+..... ..+.-+|-+|.+|.+|+ .+...++.-|...|.|..-+..+
T Consensus 1143 VVIIDE~AdLm~~~~---------kevE~lI~rLAq--kGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~D 1211 (1355)
T PRK10263 1143 VVLVDEFADLMMTVG---------KKVEELIARLAQ--KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 1211 (1355)
T ss_pred EEEEcChHHHHhhhh---------HHHHHHHHHHHH--HhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHH
Confidence 899999988764311 112121212211 22445688899999996 47777888999999999998888
Q ss_pred HHHHHHH
Q 011305 382 RRAMFES 388 (489)
Q Consensus 382 R~~IL~~ 388 (489)
-..||-.
T Consensus 1212 SrtILd~ 1218 (1355)
T PRK10263 1212 SRTILDQ 1218 (1355)
T ss_pred HHHhcCC
Confidence 8777754
|
|
| >PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0066 Score=64.09 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+.|.|.|++|||||||+++||+.+|.+.+.
T Consensus 220 ~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 220 RTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 679999999999999999999999887654
|
|
| >COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.01 Score=55.17 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=34.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV 279 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~ 279 (489)
..+..+.|+|.+|+||||+|.++.+.+ |...+.+++..+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 345678999999999999999999987 8899999886654
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.026 Score=54.79 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
+...++|.||.|+|||++.+.++.
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446789999999999999999988
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.065 Score=52.32 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~e 265 (489)
.+|.||||+|||+++-.+|..
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 589999999999999999874
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0069 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=31.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+..++..+++.||||+|||+++..++.+. +.+.++++..+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~ 58 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE 58 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 46677889999999999999999876533 66777777644
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >COG5245 DYN1 Dynein, heavy chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.004 Score=72.97 Aligned_cols=141 Identities=20% Similarity=0.260 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCCcHHHHH-HHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhc---------------CC
Q 011305 239 LSPWKGILLFGPPGTGKTMLA-KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH---------------AP 302 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lA-ralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~---------------~p 302 (489)
....++++++||||+|||++. -++-.++-..++.+|-+.-. .++..+.. ++.-..+ +-
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t-----~T~s~ls~-Ler~t~yy~~tg~~~l~PK~~vK~ 1564 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCT-----MTPSKLSV-LERETEYYPNTGVVRLYPKPVVKD 1564 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeecccc-----CCHHHHHH-HHhhceeeccCCeEEEccCcchhh
Confidence 455689999999999999964 56666777777777754321 11112222 2211111 11
Q ss_pred cEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEeCCCCc-----ccHHHHhhcc
Q 011305 303 STIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQ-------SDELVFVLAATNLPWE-----LDAAMLRRLE 369 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatTn~p~~-----Ld~al~rRf~ 369 (489)
.|||.|||+ |...+...... --..+.+ .+-+|+.. .-.++++.+++|.+.. ....+.++-
T Consensus 1565 lVLFcDeIn-Lp~~~~y~~~~vI~FlR~l-----~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~- 1637 (3164)
T COG5245 1565 LVLFCDEIN-LPYGFEYYPPTVIVFLRPL-----VERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP- 1637 (3164)
T ss_pred eEEEeeccC-CccccccCCCceEEeeHHH-----HHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-
Confidence 399999998 44333221110 0011111 11122322 1245888999998754 334555443
Q ss_pred cccccCCCCHHHHHHHHHHhcCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
..+.+..|.-.....|.+.++..
T Consensus 1638 v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1638 VFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred eEEEecCcchhhHHHHHHHHHHH
Confidence 56778899999999998877644
|
|
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0089 Score=61.49 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=45.5
Q ss_pred Cc-cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 011305 208 WE-SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (489)
Q Consensus 208 ~~-dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~ 274 (489)
|+ ++.|+++...++.+.+...-.. +....+-++|.||+|+|||++++.+-+-+ ..+++.+.
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g------~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~ 121 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQG------LEERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLK 121 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhc------cCccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEec
Confidence 44 8999999999998877553321 22334678999999999999999999877 34555553
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.021 Score=52.60 Aligned_cols=28 Identities=39% Similarity=0.632 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||++.++...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566789999999999999999999875
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.035 Score=51.36 Aligned_cols=28 Identities=29% Similarity=0.612 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||+|.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3556779999999999999999999865
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0031 Score=60.45 Aligned_cols=24 Identities=50% Similarity=0.670 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-+.+.||+|||||++|-+.|.++
T Consensus 20 ~~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 20 DLVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp SEEEEE--TTSSTTHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999766
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK09302 circadian clock protein KaiC; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.047 Score=59.52 Aligned_cols=78 Identities=21% Similarity=0.206 Sum_probs=52.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc----------------------------cch
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------------------GDS 286 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~----------------------------g~~ 286 (489)
+.+.+..++++||||+|||+++..++.+. |.+.++++..+-..... ...
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 35666789999999999999999988654 67777776533211100 011
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...+..+.......++.+++||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 23334444455566789999999988864
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.052 Score=58.98 Aligned_cols=28 Identities=36% Similarity=0.428 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
...+..+.|.||+|+||||++..++..+
T Consensus 347 l~~G~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 347 LERGGVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445778999999999999999998754
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0035 Score=58.85 Aligned_cols=29 Identities=38% Similarity=0.578 Sum_probs=25.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..++|.||+|+||||+++.++...+.+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 46899999999999999999998876543
|
|
| >PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.026 Score=56.07 Aligned_cols=114 Identities=18% Similarity=0.241 Sum_probs=60.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchh---------hhhccc---------------
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV---------SKWRGD--------------- 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~---------~~~~g~--------------- 285 (489)
...+.-.=|+||||+|||.++-.+|-.. +..+++++...-+ ..+.-+
T Consensus 35 i~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~ 114 (256)
T PF08423_consen 35 IPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVFD 114 (256)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SS
T ss_pred CCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecCC
Confidence 3444445599999999999999888654 3457888764311 111100
Q ss_pred ---hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 286 ---SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 286 ---~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
....+..+.......+-.+|+||-+-.++.....+..+.......+..++..+..+....+ +.||.|
T Consensus 115 ~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~e~~~~~~~~~R~~~L~~~~~~L~~lA~~~~-iaVvvT 184 (256)
T PF08423_consen 115 LEELLELLEQLPKLLSESKIKLIVIDSIAALFRSEFSGRGDLAERQRMLARLARILKRLARKYN-IAVVVT 184 (256)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHHHSGSTTTHHHHHHHHHHHHHHHHHHHHHTT--EEEEE
T ss_pred HHHHHHHHHHHHhhccccceEEEEecchHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHhCC-ceEEee
Confidence 1111222222223345579999999998865322111122223455556555555544333 444434
|
It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D .... |
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.02 Score=59.70 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+..+++.||.|||||++.+++...+.
T Consensus 21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 21 EGLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CCcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 357899999999999999999998873
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0058 Score=60.51 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=32.8
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+.+..+.+|++|+||||||+++..++.+. |.+.++|+..+
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e 61 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE 61 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC
Confidence 45677889999999999999999988765 67788887544
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.038 Score=51.48 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+||||+++.++...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4566789999999999999999999865
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR00174 miaA tRNA isopentenyltransferase (miaA) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.0035 Score=63.11 Aligned_cols=34 Identities=24% Similarity=0.534 Sum_probs=29.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+++.||+|+|||++|..+|++++..++.++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999998887766444
|
Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. |
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0031 Score=64.21 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=30.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.-+++.||+|||||++|..+|++++.+++..+.-.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 56899999999999999999999998877666533
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.004 Score=57.81 Aligned_cols=23 Identities=52% Similarity=0.804 Sum_probs=20.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.012 Score=55.25 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=27.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
|.|+|.+|||||++++.+++..+.+++ ++.++...
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i--~~D~~~~~ 36 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVI--DADKIAHQ 36 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEE--eCCHHHHH
Confidence 679999999999999999998666654 55555433
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.007 Score=57.77 Aligned_cols=38 Identities=26% Similarity=0.208 Sum_probs=29.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC-CcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK-TTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~-~~~i~v~~s~l 278 (489)
.+.-|.|.|++||||||+++.|++.++ ..+..++..++
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 346789999999999999999999984 34555555443
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.016 Score=66.09 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=41.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh----hhccchHHHHHHHHHH-HH----hcCCcEEEEchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRGDSEKLIKVLFEL-AR----HHAPSTIFLDEI 310 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----~~~g~~~~~l~~lf~~-A~----~~~p~VL~IDEi 310 (489)
+-++|.|+||||||++++++...+ |..++.+..+.... ...|.....+..+... .. .....+|+|||+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~~~~~~~~~~~~~~~llIvDEa 448 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTLASLEYAWANGRDLLSDKDVLVIDEA 448 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeHHHHHhhhccCcccCCCCcEEEEECc
Confidence 567899999999999999997654 66666554433221 1112211222332111 11 123479999999
Q ss_pred hhH
Q 011305 311 DAI 313 (489)
Q Consensus 311 D~l 313 (489)
-.+
T Consensus 449 sMv 451 (744)
T TIGR02768 449 GMV 451 (744)
T ss_pred ccC
Confidence 655
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.0072 Score=56.68 Aligned_cols=25 Identities=40% Similarity=0.509 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.-++|.||+|+||||+++++-...
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568899999999999999998876
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 489 | ||||
| 2qp9_X | 355 | Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | 3e-74 | ||
| 3eih_A | 340 | Crystal Structure Of S.Cerevisiae Vps4 In The Prese | 4e-73 | ||
| 2rko_A | 331 | Crystal Structure Of The Vps4p-Dimer Length = 331 | 1e-72 | ||
| 3eie_A | 322 | Crystal Structure Of S.Cerevisiae Vps4 In The So4-B | 2e-72 | ||
| 2zam_A | 444 | Crystal Structure Of Mouse Skd1VPS4B APO-Form Lengt | 3e-70 | ||
| 1xwi_A | 322 | Crystal Structure Of Vps4b Length = 322 | 6e-70 | ||
| 3d8b_A | 357 | Crystal Structure Of Human Fidgetin-Like Protein 1 | 5e-62 | ||
| 3b9p_A | 297 | Spastin Length = 297 | 2e-61 | ||
| 3vfd_A | 389 | Human Spastin Aaa Domain Length = 389 | 9e-58 | ||
| 3cf1_A | 806 | Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Len | 4e-41 | ||
| 1r7r_A | 816 | The Crystal Structure Of Murine P97VCP AT 3.6A Leng | 5e-41 | ||
| 3cf0_A | 301 | Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH | 5e-41 | ||
| 3h4m_A | 285 | Aaa Atpase Domain Of The Proteasome- Activating Nuc | 2e-40 | ||
| 4b4t_L | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 2e-37 | ||
| 3hu3_A | 489 | Structure Of P97 N-D1 R155h Mutant In Complex With | 2e-37 | ||
| 3hu2_A | 489 | Structure Of P97 N-D1 R86a Mutant In Complex With A | 2e-37 | ||
| 3hu1_A | 489 | Structure Of P97 N-D1 R95g Mutant In Complex With A | 2e-37 | ||
| 4b4t_K | 428 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-37 | ||
| 1e32_A | 458 | Structure Of The N-Terminal Domain And The D1 Aaa D | 4e-36 | ||
| 2x8a_A | 274 | Human Nuclear Valosin Containing Protein Like (Nvl) | 1e-35 | ||
| 4b4t_J | 405 | Near-Atomic Resolution Structural Model Of The Yeas | 1e-35 | ||
| 2ce7_A | 476 | Edta Treated Length = 476 | 3e-34 | ||
| 4b4t_M | 434 | Near-Atomic Resolution Structural Model Of The Yeas | 3e-34 | ||
| 4b4t_I | 437 | Near-Atomic Resolution Structural Model Of The Yeas | 5e-34 | ||
| 4b4t_H | 467 | Near-Atomic Resolution Structural Model Of The Yeas | 7e-34 | ||
| 3kds_E | 465 | Apo-ftsh Crystal Structure Length = 465 | 1e-33 | ||
| 2r62_A | 268 | Crystal Structure Of Helicobacter Pylori Atp Depend | 3e-32 | ||
| 1lv7_A | 257 | Crystal Structure Of The Aaa Domain Of Ftsh Length | 6e-31 | ||
| 2qz4_A | 262 | Human Paraplegin, Aaa Domain In Complex With Adp Le | 4e-30 | ||
| 1iy2_A | 278 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-27 | ||
| 1ixz_A | 254 | Crystal Structure Of The Ftsh Atpase Domain From Th | 1e-27 | ||
| 4eiw_A | 508 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 4e-27 | ||
| 2dhr_A | 499 | Whole Cytosolic Region Of Atp-Dependent Metalloprot | 5e-27 | ||
| 3mhv_C | 117 | Crystal Structure Of Vps4 And Vta1 Length = 117 | 1e-06 | ||
| 1ksf_X | 758 | Crystal Structure Of Clpa, An Hsp100 Chaperone And | 8e-06 | ||
| 3pvs_A | 447 | Structure And Biochemical Activities Of Escherichia | 6e-04 | ||
| 1jbk_A | 195 | Crystal Structure Of The First Nucelotide Binding D | 6e-04 | ||
| 3qmz_A | 2486 | Crystal Structure Of The Cytoplasmic Dynein Heavy C | 7e-04 | ||
| 4ai6_A | 2695 | Dynein Motor Domain - Adp Complex Length = 2695 | 8e-04 |
| >pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4 Length = 355 | Back alignment and structure |
|
| >pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of Atpgammas Length = 340 | Back alignment and structure |
|
| >pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer Length = 331 | Back alignment and structure |
|
| >pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound State Length = 322 | Back alignment and structure |
|
| >pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form Length = 444 | Back alignment and structure |
|
| >pdb|1XWI|A Chain A, Crystal Structure Of Vps4b Length = 322 | Back alignment and structure |
|
| >pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357 | Back alignment and structure |
|
| >pdb|3B9P|A Chain A, Spastin Length = 297 | Back alignment and structure |
|
| >pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389 | Back alignment and structure |
|
| >pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX Length = 806 | Back alignment and structure |
|
| >pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A Length = 816 | Back alignment and structure |
|
| >pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP Length = 301 | Back alignment and structure |
|
| >pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285 | Back alignment and structure |
|
| >pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs Length = 489 | Back alignment and structure |
|
| >pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428 | Back alignment and structure |
|
| >pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain Of Membrane Fusion Atpase P97 Length = 458 | Back alignment and structure |
|
| >pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C- Terminal Aaa-Atpase Domain Length = 274 | Back alignment and structure |
|
| >pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405 | Back alignment and structure |
|
| >pdb|2CE7|A Chain A, Edta Treated Length = 476 | Back alignment and structure |
|
| >pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 434 | Back alignment and structure |
|
| >pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437 | Back alignment and structure |
|
| >pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 467 | Back alignment and structure |
|
| >pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465 | Back alignment and structure |
|
| >pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268 | Back alignment and structure |
|
| >pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257 | Back alignment and structure |
|
| >pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262 | Back alignment and structure |
|
| >pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278 | Back alignment and structure |
|
| >pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254 | Back alignment and structure |
|
| >pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508 | Back alignment and structure |
|
| >pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499 | Back alignment and structure |
|
| >pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1 Length = 117 | Back alignment and structure |
|
| >pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And Regulator Of Clpap Protease: Structural Basis Of Differences In Function Of The Two Aaa+ Atpase Domains Length = 758 | Back alignment and structure |
|
| >pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli Mgsa Length = 447 | Back alignment and structure |
|
| >pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain Of Clpb Length = 195 | Back alignment and structure |
|
| >pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486 | Back alignment and structure |
|
| >pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297 | Back alignment and structure |
|---|
Score = 434 bits (1117), Expect = e-152
Identities = 135/305 (44%), Positives = 190/305 (62%), Gaps = 12/305 (3%)
Query: 189 RALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLF 248
+ L + + +I+ G V+W I G + AK+ L+E V++P P+ FTGL +P KG+LLF
Sbjct: 1 QKLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLF 60
Query: 249 GPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLD 308
GPPG GKT+LA+AVATEC TF NISA+S+ SK+ GD EKL++ LF +ARH PS IF+D
Sbjct: 61 GPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFID 120
Query: 309 EIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELVFVLAATNLPWELDAAMLR 366
E+D+++S+R SEHEASRRLKTE L++ DGL + + + VLAATN P ELD A LR
Sbjct: 121 EVDSLLSERSS--SEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALR 178
Query: 367 RLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAM 425
R KR+ V LPD + R + LL Q L + T+GYSGSD+ ++K+AA+
Sbjct: 179 RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAAL 238
Query: 426 QPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYG 484
+P+R L E ++ + I +D +LK R S A + YEK++ DYG
Sbjct: 239 EPIRELN------VEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292
Query: 485 SEILQ 489
++
Sbjct: 293 DITIK 297
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322 | Back alignment and structure |
|---|
Score = 432 bits (1114), Expect = e-151
Identities = 141/317 (44%), Positives = 191/317 (60%), Gaps = 29/317 (9%)
Query: 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKT 256
I+ P+VKWE + GLE AK LKEAV++P+K+P F G P GILL+GPPGTGK+
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 257 MLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316
LAKAVATE +TFF++S+S +VSKW G+SEKL+K LF +AR + PS IF+D++DA+
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL 376
RGE E EASRR+KTELL+QM+G+ + V VL ATN+PW+LD+A+ RR E+RI +PL
Sbjct: 126 RGE--GESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPL 183
Query: 377 PDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435
PD AR MFE + Y L TEGYSGSDI +V K+A MQP+R++
Sbjct: 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243
Query: 436 EGRQEVAPDDELPQIG-------------------------PIRPEDVEIALKNTRPS-A 469
+ DDE ++ + +D A+K+TRP+
Sbjct: 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVN 303
Query: 470 HLHAHRYEKFNADYGSE 486
+ E+F D+G E
Sbjct: 304 EDDLLKQEQFTRDFGQE 320
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 | Back alignment and structure |
|---|
Score = 429 bits (1104), Expect = e-149
Identities = 138/322 (42%), Positives = 196/322 (60%), Gaps = 36/322 (11%)
Query: 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTML 258
I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+GILLFGPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 259 AKAVATECK-TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317
AKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + PS IF+DEID++ R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLP 377
E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+A+ RR EKRI +PLP
Sbjct: 122 SE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 378 DTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436
+ AR AMF+ L + + + L +T+GYSG+DI ++ ++A MQP+R++
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATH 239
Query: 437 GRQEVAPDDELPQIG-------------------------------PIRPEDVEIALKNT 465
++ P P + D+ +L NT
Sbjct: 240 FKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNT 299
Query: 466 RPSAHLH-AHRYEKFNADYGSE 486
+P+ + H + +KF D+G E
Sbjct: 300 KPTVNEHDLLKLKKFTEDFGQE 321
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-149
Identities = 131/314 (41%), Positives = 191/314 (60%), Gaps = 12/314 (3%)
Query: 176 QKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYF 235
+K L NF + ++ LA + +I+ VK++ I G + AK+ L+E V++P P+ F
Sbjct: 83 KKKDLKNFRNVDSN-LANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELF 141
Query: 236 TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFE 295
TGL +P +G+LLFGPPG GKTMLAKAVA E TFFNISA+S+ SK+ G+ EKL++ LF
Sbjct: 142 TGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFA 201
Query: 296 LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAAT 354
+AR PS IF+D++D+++ +R E EH+ASRRLKTE LI+ DG+ + D+ V V+ AT
Sbjct: 202 VARELQPSIIFIDQVDSLLCERRE--GEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGAT 259
Query: 355 NLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSG 413
N P ELD A+LRR KR+ V LP+ E R + ++LL Q + L T+GYSG
Sbjct: 260 NRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319
Query: 414 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHA 473
SD+ ++K+AA+ P+R L E + ++ IR D +LK + S
Sbjct: 320 SDLTALAKDAALGPIRELK------PEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQT 373
Query: 474 -HRYEKFNADYGSE 486
Y ++N D+G
Sbjct: 374 LEAYIRWNKDFGDT 387
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357 | Back alignment and structure |
|---|
Score = 426 bits (1096), Expect = e-148
Identities = 126/298 (42%), Positives = 188/298 (63%), Gaps = 11/298 (3%)
Query: 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 250
+ E + +I+ P V WE I G+E AK +KE VV P+ P FTGL P KGILLFGP
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGP 125
Query: 251 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEI 310
PGTGKT++ K +A++ TFF+ISASS+ SKW G+ EK+++ LF +AR P+ IF+DEI
Sbjct: 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185
Query: 311 DAIISQRGEARSEHEASRRLKTELLIQMDGL-TQSDELVFVLAATNLPWELDAAMLRRLE 369
D+++SQRG+ EHE+SRR+KTE L+Q+DG T S++ + V+ ATN P E+D A RRL
Sbjct: 186 DSLLSQRGD--GEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLV 243
Query: 370 KRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428
KR+ +PLP+ AR+ + +L+ + S + +V++++ +SG+D+ + +EA++ P+
Sbjct: 244 KRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303
Query: 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGS 485
R L + PD Q+ PI D E A + RPS + YE +N +G
Sbjct: 304 RSLQT--ADIATITPD----QVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGC 355
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355 | Back alignment and structure |
|---|
Score = 416 bits (1072), Expect = e-144
Identities = 144/342 (42%), Positives = 203/342 (59%), Gaps = 29/342 (8%)
Query: 172 NERLQKPLLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY 231
N+++ + + + + L +L I+ P+VKWE + GLE AK LKEAV++P+K+
Sbjct: 14 NKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73
Query: 232 PKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIK 291
P F G P GILL+GPPGTGK+ LAKAVATE +TFF++S+S +VSKW G+SEKL+K
Sbjct: 74 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 292 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351
LF +AR + PS IF+D++DA+ RGE E EASRR+KTELL+QM+G+ + V VL
Sbjct: 134 QLFAMARENKPSIIFIDQVDALTGTRGE--GESEASRRIKTELLVQMNGVGNDSQGVLVL 191
Query: 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410
ATN+PW+LD+A+ RR E+RI +PLPD AR MFE + + Y L TEG
Sbjct: 192 GATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEG 251
Query: 411 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG------------------- 451
YSGSDI +V K+A MQP+R++ + DDE ++
Sbjct: 252 YSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEA 311
Query: 452 ------PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 486
+ +D A+K+TRP+ + E+F D+G E
Sbjct: 312 DELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 353
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444 | Back alignment and structure |
|---|
Score = 408 bits (1049), Expect = e-139
Identities = 141/337 (41%), Positives = 197/337 (58%), Gaps = 36/337 (10%)
Query: 184 DSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK 243
D E + L L I+ P+VKW + GLE AK LKEAV++PIK+P FTG +PW+
Sbjct: 109 DDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWR 168
Query: 244 GILLFGPPGTGKTMLAKAVATECK-TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAP 302
GILLFGPPGTGK+ LAKAVATE +TFF+IS+S +VSKW G+SEKL+K LF+LAR + P
Sbjct: 169 GILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKP 228
Query: 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362
S IF+DEID++ R E +E EA+RR+KTE L+QM G+ ++ + VL ATN+PW LD+
Sbjct: 229 SIIFIDEIDSLCGSRSE--NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDS 286
Query: 363 AMLRRLEKRILVPLPDTEARRAMFESLLPSQ-TGEESLPYDLLVERTEGYSGSDIRLVSK 421
A+ RR EKRI +PLP+ AR AMF L S + L +T+GYSG+DI ++ +
Sbjct: 287 AIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVR 346
Query: 422 EAAMQPLRRLMVLLEGRQEVAPDDELPQIG------------------------------ 451
+A MQP+R++ ++ P P
Sbjct: 347 DALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLE 406
Query: 452 -PIRPEDVEIALKNTRPS-AHLHAHRYEKFNADYGSE 486
+ D+ +L +T+P+ + +KF D+G E
Sbjct: 407 PVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301 | Back alignment and structure |
|---|
Score = 265 bits (679), Expect = 9e-86
Identities = 94/283 (33%), Positives = 157/283 (55%), Gaps = 12/283 (4%)
Query: 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 255
R+ + P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 256 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315
T+LAKA+A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 316 QRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRI 372
RG + A+ R+ ++L +MDG++ VF++ ATN P +D A+LR RL++ I
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLI 181
Query: 373 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432
+PLPD ++R A+ ++ L + + + L + T G+SG+D+ + + A +R +
Sbjct: 182 YIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241
Query: 433 -------VLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468
+ +E + IR + E A++ R S
Sbjct: 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRS 284
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274 | Back alignment and structure |
|---|
Score = 257 bits (658), Expect = 4e-83
Identities = 89/274 (32%), Positives = 146/274 (53%), Gaps = 18/274 (6%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
P+V W I LE+ + L A++ P++ P F L L G+LL GPPG GKT+LAKAV
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAV 64
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
A E F ++ +++ + G+SE+ ++ +F+ A++ AP IF DE+DA+ +R +
Sbjct: 65 ANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSD--R 122
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTE 380
E AS R+ +LL +MDGL + VF++AATN P +D A+LR RL+K + V LP
Sbjct: 123 ETGASVRVVNQLLTEMDGLEARQQ-VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 381 ARRAMFESLLPSQTG---EESLPYDLLVE--RTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435
R A+ +++ + T + + + + R + Y+G+D+ + +EA++ LR+ M
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEM--- 238
Query: 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469
+ + E A K R S
Sbjct: 239 ----ARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489 | Back alignment and structure |
|---|
Score = 260 bits (667), Expect = 1e-81
Identities = 92/276 (33%), Positives = 152/276 (55%), Gaps = 7/276 (2%)
Query: 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGK 255
D +V ++ I G +KE V +P+++P F + + P +GILL+GPPGTGK
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGK 251
Query: 256 TMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315
T++A+AVA E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI
Sbjct: 252 TLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAP 311
Query: 316 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRIL 373
+R + E E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ +
Sbjct: 312 KREKTHGEVE--RRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVD 368
Query: 374 VPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433
+ +PD R + + + + + + + T G+ G+D+ + EAA+Q +R+ M
Sbjct: 369 IGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428
Query: 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSA 469
L++ E + + + + +D AL + PSA
Sbjct: 429 LIDLEDETIDAEVMNSLA-VTMDDFRWALSQSNPSA 463
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285 | Back alignment and structure |
|---|
Score = 245 bits (627), Expect = 2e-78
Identities = 95/247 (38%), Positives = 145/247 (58%), Gaps = 11/247 (4%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
P+V++E I GLE + ++E V +P+K+P+ F + + P KGILL+GPPGTGKT+LAKA
Sbjct: 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKA 70
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VATE TF + S +V K+ G+ L+K +F+LA+ APS IF+DEIDAI ++R +A
Sbjct: 71 VATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDAL 130
Query: 322 SEHEA-SRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
+ + +R +LL +MDG + V ++ ATN P LD A+LR R ++ I VP PD
Sbjct: 131 TGGDREVQRTLMQLLAEMDGFDARGD-VKIIGATNRPDILDPAILRPGRFDRIIEVPAPD 189
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
+ R + + E + + + + TEG G++++ + EA M +R R
Sbjct: 190 EKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRE------LR 243
Query: 439 QEVAPDD 445
V DD
Sbjct: 244 DYVTMDD 250
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293 | Back alignment and structure |
|---|
Score = 184 bits (469), Expect = 6e-55
Identities = 47/272 (17%), Positives = 97/272 (35%), Gaps = 29/272 (10%)
Query: 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270
+ G A + + VV K + P + ++G G GK+ + V +
Sbjct: 6 LDGFYIAPAFMDKLVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRKMGINP 64
Query: 271 FNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHEA 326
+SA + S G+ KLI+ + A R +F++++DA + G
Sbjct: 65 IMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVN 124
Query: 327 SR---RLKTELL-----IQMDGLTQSDEL--VFVLAATNLPWELDAAMLR--RLEKRILV 374
++ + +Q+ G+ E V ++ N L A ++R R+EK
Sbjct: 125 NQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWA 184
Query: 375 PLPDTEAR--RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432
P + +F + +++P + +V+ + + G I A +
Sbjct: 185 PTREDRIGVCTGIFRT--------DNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVR 236
Query: 433 --VLLEGRQEVAPDDELPQIGPIRPEDVEIAL 462
V G +++ GP E ++ +
Sbjct: 237 KWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTI 268
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262 | Back alignment and structure |
|---|
Score = 158 bits (403), Expect = 2e-45
Identities = 83/233 (35%), Positives = 129/233 (55%), Gaps = 11/233 (4%)
Query: 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAKAVA 263
V ++ + G+ AK ++E V +K P+ F L + P KG LL GPPG GKT+LAKAVA
Sbjct: 3 VSFKDVAGMHEAKLEVRE-FVDYLKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVA 60
Query: 264 TECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
TE + F ++ + V G ++ LF+ AR AP +++DEIDA+ +R S
Sbjct: 61 TEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSG 120
Query: 324 HEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 379
+ +T +LL++MDG+ + + V VLA+TN LD A++R RL++ + + LP
Sbjct: 121 FSNTEEEQTLNQLLVEMDGMG-TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179
Query: 380 EARRAMFE-SLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
+ RR +FE L + + + L E T G+SG+DI + EAA+ R
Sbjct: 180 QERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAARE 232
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268 | Back alignment and structure |
|---|
Score = 157 bits (399), Expect = 6e-45
Identities = 86/234 (36%), Positives = 128/234 (54%), Gaps = 8/234 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 260
P+V+++ + G E AK + E +V +KYP+ + L + P KG+LL GPPGTGKT+LAK
Sbjct: 5 KPNVRFKDMAGNEEAKEEVVE-IVDFLKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAK 62
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E FF++ SS + + G ++ LFE A+ APS IF+DEIDAI R
Sbjct: 63 AVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAG 122
Query: 321 RSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
R +T +LL +MDG + V VLAATN P LD A++R R ++++LV
Sbjct: 123 GVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDK 182
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
PD R + + + + + + T G +G+D+ + EAA+ R
Sbjct: 183 PDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN 236
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278 | Back alignment and structure |
|---|
Score = 154 bits (391), Expect = 1e-43
Identities = 85/233 (36%), Positives = 128/233 (54%), Gaps = 8/233 (3%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG GKT LA+
Sbjct: 34 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 91
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320
AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 92 AVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSG 151
Query: 321 RS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLP 377
++ + +LL++MDG + D + V+AATN P LD A+LR R +++I + P
Sbjct: 152 VGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP 210
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
D + R + + E + LL +RT G+ G+D+ + EAA+ R
Sbjct: 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 263
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 81/234 (34%), Positives = 126/234 (53%), Gaps = 8/234 (3%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 259
+ + G + AK + E +V ++ P F L P KG+L+ GPPGTGKT+LA
Sbjct: 5 DQIKTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLA 62
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGE 319
KA+A E K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG
Sbjct: 63 KAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGA 122
Query: 320 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
H+ + ++L++MDG + +E + V+AATN P LD A+LR R +++++V L
Sbjct: 123 GLGGGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGL 181
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
PD R + + + + ++ T G+SG+D+ + EAA+ R
Sbjct: 182 PDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG 235
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 2e-43
Identities = 85/239 (35%), Positives = 130/239 (54%), Gaps = 8/239 (3%)
Query: 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTG 254
++ +P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG G
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVG 61
Query: 255 KTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAII 314
KT LA+AVA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 315 SQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKR 371
+RG ++ + +LL++MDG + D + V+AATN P LD A+LR R +++
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQ 180
Query: 372 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430
I + PD + R + + E + LL +RT G+ G+D+ + EAA+ R
Sbjct: 181 IAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE 239
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-39
Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 15/249 (6%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 263
I + + + + ++ K +P +LL GPP +GKT LA +A
Sbjct: 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDR--TPLVSVLLEGPPHSGKTALAAKIA 85
Query: 264 TECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
E F I + + + ++ + +K +F+ A S + +D+I+ ++
Sbjct: 86 EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG-- 143
Query: 323 EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-MLRRLEKRILVPLPDTEA 381
S + LL+ + + ++ T+ L ML I V P+
Sbjct: 144 -PRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHV--PNIAT 200
Query: 382 RRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAMQ--PLRRLMVLLE 436
+ E+L ++ + ++ +G G L+ E ++Q P R+ L
Sbjct: 201 GEQLLEALELLGNFKDK-ERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPEYRVRKFLA 259
Query: 437 GRQEVAPDD 445
+E
Sbjct: 260 LLREEGASP 268
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* Length = 476 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 1e-35
Identities = 94/250 (37%), Positives = 133/250 (53%), Gaps = 40/250 (16%)
Query: 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLA 259
G+ V ++ + G E A LKE VV +K P F + + P KGILL GPPGTGKT+LA
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKE-VVEFLKDPSKFNRIGARMP-KGILLVGPPGTGKTLLA 66
Query: 260 KAVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDA 312
+AVA E FF+IS S V E + V LF A+ HAP +F+DEIDA
Sbjct: 67 RAVAGEANVPFFHISGSDFV-------ELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDA 119
Query: 313 IISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDA 362
+ RG E R +T +LL++MDG S E + V+AATN P LD
Sbjct: 120 VGRHRGAGLGGGHDE---------REQTLNQLLVEMDGF-DSKEGIIVMAATNRPDILDP 169
Query: 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVS 420
A+LR R +K+I+V PD R+ + E ++ E + +++ +RT G+ G+D+ +
Sbjct: 170 ALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLV 229
Query: 421 KEAAMQPLRR 430
EAA+ R
Sbjct: 230 NEAALLAARE 239
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} Length = 499 | Back alignment and structure |
|---|
Score = 137 bits (347), Expect = 1e-35
Identities = 89/249 (35%), Positives = 128/249 (51%), Gaps = 40/249 (16%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLS--PWKGILLFGPPGTGKTMLAK 260
+P V ++ + G E AK LKE +V +K P F + + P KG+LL GPPG GKT LA+
Sbjct: 25 APKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIP-KGVLLVGPPGVGKTHLAR 82
Query: 261 AVATECKTTFFNISASSVVSKWRGDSEKLIKV-------LFELARHHAPSTIFLDEIDAI 313
AVA E + F S S V E + V LFE A+ HAP +F+DEIDA+
Sbjct: 83 AVAGEARVPFITASGSDFV-------EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAV 135
Query: 314 ISQRG--------EARSEHEASRRLKT--ELLIQMDGLTQSDELVFVLAATNLPWELDAA 363
+RG E R +T +LL++MDG + D + V+AATN P LD A
Sbjct: 136 GRKRGSGVGGGNDE---------REQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPA 185
Query: 364 MLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 421
+LR R +++I + PD + R + + E + LL +RT G+ G+D+ +
Sbjct: 186 LLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLN 245
Query: 422 EAAMQPLRR 430
EAA+ R
Sbjct: 246 EAALLAARE 254
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-13
Identities = 54/306 (17%), Positives = 98/306 (32%), Gaps = 51/306 (16%)
Query: 179 LLPNFDSAETRALAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL 238
L ++ + + + E L R++I GL+ K ++E + + + L
Sbjct: 13 LRAEYEGSGAKEVLEELDRELI------------GLKPVKDRIRETAAL-LLVERARQKL 59
Query: 239 ----LSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSVVSKWRGDSE 287
+P + G PGTGKT +A +A K +++ +V ++ G +
Sbjct: 60 GLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTA 119
Query: 288 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347
K + + A +F+DE + E EA L + D+L
Sbjct: 120 PKTKEVLKRAM---GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVM------ENNRDDL 170
Query: 348 VFVLAA----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE 396
V +LA ++ + R+ I P E + +L Q
Sbjct: 171 VVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230
Query: 397 ESLPYDLLVERTEGYS-GSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRP 455
Y L ++ IR A ++ RL L I
Sbjct: 231 ALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF---TASSGPLDARALST---IAE 284
Query: 456 EDVEIA 461
ED+ +
Sbjct: 285 EDIRAS 290
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 2e-13
Identities = 55/342 (16%), Positives = 108/342 (31%), Gaps = 94/342 (27%)
Query: 167 LANVINERLQKPLLPNFDSAETRALAESLCRDIIRGSP-DVKWESIKGLENAKRLLKEAV 225
L + I ++P + E R + L D + +V ++ ++ L E
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQR---DRLYNDNQVFAKYNVS--RLQPYLKLRQALLE-- 146
Query: 226 VMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISASSVVSKW 282
L P K +L+ G G+GKT +A V K F I W
Sbjct: 147 -------------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-------W 186
Query: 283 -----RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL------K 331
E ++++L +L P+ + D + + S RRL +
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391
LL+ + + + +A L +IL+ T + + + L
Sbjct: 245 NCLLV-LLNV--QN-----------AKAWNAFNLS---CKILL----TTRFKQVTDFLSA 283
Query: 392 SQTGEESLPYDLLVERTEGYSGSDIR-LVSKEAAMQPLRRLMVLLEGRQEVAPDDELP-Q 449
+ T S L + + +++ L+ K +P +LP +
Sbjct: 284 ATTTHIS-----LDHHSMTLTPDEVKSLLLKYLDCRP-----------------QDLPRE 321
Query: 450 IGPIRPEDVEI--ALKNTRPSAHLHAHRYEKFNADYGSEILQ 489
+ P + I + ++ N D + I++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLA---TWDNWKHVNCDKLTTIIE 360
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 8e-09
Identities = 90/560 (16%), Positives = 155/560 (27%), Gaps = 181/560 (32%)
Query: 11 DFDIRALTKCLKEGIITSRFIISKFIIGPPHAFFYSFGSPPFQFSLAIQLAGCCSVETER 70
+FD + + K I++ I II
Sbjct: 32 NFDCKDVQDMPK-SILSKEEI--DHIIMSKD-------------------------AVSG 63
Query: 71 ERFFFFLIFILSAISLLLRLSNLSAMA-DEPMPTRWTFQFGRKKIKEPEKGEITERPVSD 129
F+ LL + + +E + + F K ++ + +T +
Sbjct: 64 TLRLFWT--------LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 130 GSSLNSNGHVQNTSDMAV-----YEQYRTQFQ--------------GSGSTCLNGVLANV 170
L ++ V + V Y + R GSG T + L
Sbjct: 116 RDRLYNDNQV--FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV--ALDVC 171
Query: 171 INERLQKPL--------LPNFDSAETR-ALAESLCRDI---------IRGSPDVKWESIK 212
++ ++Q + L N +S ET + + L I + ++ SI+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLL------SPWKGILLFGPPGTGKTMLAKAVATEC 266
+RLLK Y LL + A C
Sbjct: 232 --AELRRLLKSK-----PYEN---CLLVLLNVQNAK---------------AWNAFNLSC 266
Query: 267 K---TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323
K TT V + I + H T+ DE+ +++ + + R +
Sbjct: 267 KILLTT----RFKQVTDFLSAATTTHISL------DHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 324 ---HEASRRLKTE-LLIQMDGLTQSDELVFVLAATNLPWE-LDAAMLRRLEKRILVPLPD 378
E L T + + + D L AT W+ ++ L + + L L
Sbjct: 317 DLPREV---LTTNPRRLSIIAESIRDGL-----ATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 379 TEARRAMFESL--------LPSQTGE----ESLPYD-----------LLVER-----TEG 410
E R+ MF+ L +P+ + + D LVE+ T
Sbjct: 369 AEYRK-MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 411 YSGSDIRLVSKEAAMQPLRRLMV-LLEGRQEVAPDDELPQIGPIRPEDVEIA------LK 463
+ L K L R +V + DD +P D LK
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPP-----YLDQYFYSHIGHHLK 482
Query: 464 NTRPSAHLHAHRYEKFNADY 483
N H R F +
Sbjct: 483 NIE-----HPERMTLFRMVF 497
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* Length = 456 | Back alignment and structure |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 41/197 (20%), Positives = 69/197 (35%), Gaps = 33/197 (16%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE--CKTTF 270
G ENA+ V + IK K + +LL GPPGTGKT LA A+A E K F
Sbjct: 41 GQENAREACGVIVEL-IKSKKM------AGRAVLLAGPPGTGKTALALAIAQELGSKVPF 93
Query: 271 FNISASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEAR------- 321
+ S V S +E L++ R ++ E+ + E
Sbjct: 94 CPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKT 153
Query: 322 ----------SEHEASRRLKTELLIQMDGLT-QSDELVFVLAATNLPWELDAAMLRR--- 367
++ +L + + ++ +++++ A +
Sbjct: 154 ISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEF 213
Query: 368 -LEKRILVPLPDTEARR 383
LE VPLP + +
Sbjct: 214 DLEAEEYVPLPKGDVHK 230
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 15/72 (20%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAP 302
++L+GPPGTGKT LA+ +A ISA S V K I+ E AR +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGV---------KEIREAIERARQNRN 103
Query: 303 ---STI-FLDEI 310
TI F+DE+
Sbjct: 104 AGRRTILFVDEV 115
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-07
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 372 ILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431
P+ EAR + + + + E G SG++++ V EA M LR
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR-- 63
Query: 432 MVLLEGRQEVAPDD 445
E R V +D
Sbjct: 64 ----ERRVHVTQED 73
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-----SVVSKWRGDSEKLIKVLFELA 297
+ +L+GPPG GKT A VA E +AS ++++ ++ + V+
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK 137
Query: 298 RHHAPST-------IFLDEIDAI 313
+ I +DE+D +
Sbjct: 138 HNEEAQNLNGKHFVIIMDEVDGM 160
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 4e-06
Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 50/233 (21%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTT-----------FFNISASSVVSKWRGDSEKLIKVL 293
L G GTGKT ++K + E + ++ V + L L
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKL 107
Query: 294 FELARHHA------------------PSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335
+ + I+LDE+D ++ +RG ++ R +
Sbjct: 108 TGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISV 167
Query: 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG 395
I + N+ ++ +L L ++ D E + +
Sbjct: 168 I------------MISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLI 215
Query: 396 EESLPYD---LLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 445
+ + + + + G D R A+ L R L G + +
Sbjct: 216 KGTYDDEILSYIAAISAKEHG-DAR-----KAVNLLFRAAQLASGGGIIRKEH 262
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* Length = 83 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-06
Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437
D +R +F ++ E + + V R + SG+DI + +E+ M +R E
Sbjct: 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVR------EN 55
Query: 438 RQEVAPDD 445
R V D
Sbjct: 56 RYIVLAKD 63
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 7e-06
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 375 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434
P P+ EAR + + + + E G SG++++ V EA M LR
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR----- 55
Query: 435 LEGRQEVAPDD 445
E R V +D
Sbjct: 56 -ERRVHVTQED 65
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G Length = 350 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 12/53 (22%)
Query: 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVA 263
I G E+ K L V P G+ G+L+FG GTGK+ +A+A
Sbjct: 26 IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALA 66
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B Length = 82 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 1e-04
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 6/45 (13%)
Query: 401 YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 445
D L+ R + SG+ I + +EA ++ +R + R + D
Sbjct: 22 LDSLIIRNDSLSGAVIAAIMQEAGLRAVR------KNRYVILQSD 60
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* Length = 180 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 6e-04
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 6/38 (15%)
Query: 243 KGILLFGPPGTGKTMLAKAVATEC------KTTFFNIS 274
KG+ G PG GKT LA A + FF+
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTK 76
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 489 | |||
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 100.0 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 100.0 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 100.0 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 100.0 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 100.0 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 100.0 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 100.0 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 100.0 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 100.0 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 100.0 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 100.0 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 100.0 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 100.0 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 100.0 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 100.0 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 100.0 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 100.0 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 100.0 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 100.0 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.98 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.97 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.97 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.97 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.96 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.95 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.93 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.87 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.85 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.84 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.84 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.83 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.8 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.8 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.79 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.77 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.76 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.76 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.75 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.75 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.75 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 99.75 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.74 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.74 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.73 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.73 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.73 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.73 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 99.7 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.7 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.69 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.69 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.69 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.68 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 99.68 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.67 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 99.67 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.67 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.66 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.66 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 99.66 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.66 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 99.66 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.66 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.65 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.65 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.63 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.62 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.62 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.61 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.59 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.59 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.57 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 99.56 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.53 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.51 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.51 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 99.43 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.37 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.36 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.33 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 99.28 | |
| 3vlf_B | 88 | 26S protease regulatory subunit 7 homolog; heat re | 99.2 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.17 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.16 | |
| 3aji_B | 83 | S6C, proteasome (prosome, macropain) 26S subunit, | 99.12 | |
| 2krk_A | 86 | 26S protease regulatory subunit 8; structural geno | 99.11 | |
| 3kw6_A | 78 | 26S protease regulatory subunit 8; structural geno | 99.1 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 99.08 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.03 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.0 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.88 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 98.87 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.85 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.83 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 98.76 | |
| 2dzn_B | 82 | 26S protease regulatory subunit 6B homolog; ankyri | 98.7 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 98.63 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.62 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.56 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.54 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 98.33 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 98.3 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.23 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.21 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 98.2 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.18 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 98.03 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.02 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.94 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 97.8 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.75 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.73 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.73 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.69 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 97.69 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.69 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.67 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 97.66 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 97.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 97.63 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.62 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.54 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.47 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 97.47 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.46 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 97.44 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.41 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.4 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.4 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.39 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.38 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.38 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.36 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.34 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.34 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.33 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.29 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.27 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.26 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.25 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.24 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.21 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.21 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.17 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.17 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 97.16 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.16 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.15 | |
| 2dl1_A | 116 | Spartin; SPG20, MIT, structural genomics, NPPSFA, | 97.14 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.13 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.13 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.13 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 97.13 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.12 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 97.1 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.08 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 97.07 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.06 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.06 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.05 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.03 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.03 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.0 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 97.0 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 96.98 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.98 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.97 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.97 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.97 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.96 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.96 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.96 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.96 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.96 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.95 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.95 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.95 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.94 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.93 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.92 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 96.91 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.87 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 96.87 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.87 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 96.86 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.85 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 96.84 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 96.82 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.8 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 96.77 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 96.77 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 96.77 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 96.75 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 96.74 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 96.74 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.73 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.7 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 96.7 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 96.68 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.67 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 96.67 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 96.62 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.62 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.62 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.61 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 96.61 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.51 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 96.48 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 96.48 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.47 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 96.44 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 96.43 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.42 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.4 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.4 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.4 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 96.39 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.38 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.38 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 96.37 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.33 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.32 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.32 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 96.29 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.27 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 96.26 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.24 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.22 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 96.22 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.19 | |
| 3eab_A | 89 | Spastin; spastin, MIT, ESCRT, alternative splicing | 96.14 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.11 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.1 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 96.08 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.08 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.07 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.03 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 95.98 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.98 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 95.96 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 95.95 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 95.94 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.92 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 95.92 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 95.9 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 95.89 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 95.88 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 95.87 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 95.87 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 95.86 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 95.85 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.85 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 95.84 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.84 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 95.81 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.8 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 95.8 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 95.8 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.72 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 95.72 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 95.7 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.7 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 95.68 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 95.66 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 95.64 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 95.62 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.6 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.58 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.53 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 95.49 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 95.44 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 95.41 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 95.34 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.33 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.27 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 95.24 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 95.24 | |
| 1c9k_A | 180 | COBU, adenosylcobinamide kinase; alpha/beta struct | 95.24 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 95.22 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 95.21 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 95.17 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 95.14 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.14 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 95.14 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 95.13 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 95.12 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 95.11 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 95.07 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.04 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 94.97 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 94.96 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 94.96 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 94.9 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 94.86 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 94.85 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 94.85 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 94.84 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.8 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 94.75 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 94.67 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 94.66 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 94.63 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 94.57 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 94.54 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 94.42 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 94.37 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 94.37 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 94.33 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 94.31 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 94.24 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 94.23 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 94.21 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 94.2 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.19 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 94.17 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 94.14 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 94.14 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 94.12 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 94.12 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 94.07 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 93.96 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 93.95 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 93.93 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 93.88 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 93.84 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 93.8 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 93.74 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 93.74 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 93.73 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 93.71 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 93.69 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 93.62 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 93.57 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 93.48 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 93.45 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 93.44 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 93.41 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 93.38 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 93.37 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 93.32 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 93.3 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 93.28 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 93.28 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.16 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 93.16 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 93.13 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 93.12 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 93.04 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 93.04 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 93.04 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 93.03 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 93.03 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 93.01 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 93.01 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 93.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 92.97 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 92.92 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 92.91 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 92.88 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 92.84 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 92.84 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 92.83 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 92.83 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 92.8 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 92.78 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 92.75 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.75 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 92.73 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 92.72 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 92.72 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 92.72 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 92.71 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 92.7 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 92.66 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 92.66 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 92.64 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 92.64 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 92.63 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 92.62 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 92.59 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 92.51 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 92.49 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 92.48 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 92.47 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 92.46 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 92.45 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 92.41 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 92.4 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 92.39 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 92.39 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 92.29 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 92.29 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 92.29 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 92.27 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 92.27 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 92.27 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 92.27 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 92.25 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 92.25 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 92.18 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 92.15 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 92.14 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 92.12 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.12 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 92.09 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 92.09 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 92.06 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 92.04 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 91.94 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 91.93 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 91.87 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 91.86 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 91.85 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 91.84 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 91.84 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 91.83 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 91.79 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 91.76 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 91.7 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 91.69 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 91.68 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 91.67 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 91.65 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 91.6 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 91.58 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 91.56 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 91.54 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 91.52 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 91.44 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 91.41 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 91.38 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 91.38 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 91.31 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 91.29 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 91.27 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 91.23 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 91.23 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 91.22 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 91.18 | |
| 1yrb_A | 262 | ATP(GTP)binding protein; GTPase, P-loop, rossman f | 91.14 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 91.12 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 91.1 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 91.08 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 91.08 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 91.05 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 91.04 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 91.04 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 91.04 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 91.02 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 91.02 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 90.95 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 90.87 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 90.87 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 90.87 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 90.85 | |
| 3ch4_B | 202 | Pmkase, phosphomevalonate kinase; parallel beta-sh | 90.84 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 90.78 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 90.77 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 90.76 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 90.73 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 90.73 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 90.72 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 90.7 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 90.68 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 90.67 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 90.66 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 90.55 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 90.54 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 90.46 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 90.45 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 90.44 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 90.4 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 90.4 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 90.39 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 90.36 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 90.34 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 90.32 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 90.31 | |
| 1dek_A | 241 | Deoxynucleoside monophosphate kinase; transferase, | 90.3 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 90.22 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 90.19 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 90.12 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 90.08 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 90.07 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 90.06 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 90.04 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 89.98 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 89.98 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 89.96 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 89.9 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 89.89 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 89.88 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 89.84 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 89.82 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 89.79 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 89.78 | |
| 1e9r_A | 437 | Conjugal transfer protein TRWB; coupling protein, | 89.77 |
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-47 Score=394.73 Aligned_cols=257 Identities=34% Similarity=0.560 Sum_probs=233.3
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
......+.|+++|+||+|++++|++|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 4556677899999999999999999999999999999999875 788899999999999999999999999999999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
++++.++|+|++++.++.+|..|+..+||||||||+|++++.+.... .......+++++||..|||+... .+|+||+|
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~V~vIaA 293 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS-KNIKIIMA 293 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC-CCEEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC-CCeEEEec
Confidence 99999999999999999999999999999999999999999875433 23345567889999999998654 45899999
Q ss_pred eCCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 354 TNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 354 Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
||+|+.||+|++| ||++.|++++|+.++|.+||+.++++.+...++|++.+|+.|+||||+||..+|++|++.++++
T Consensus 294 TNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air~- 372 (405)
T 4b4t_J 294 TNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRE- 372 (405)
T ss_dssp ESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT-
T ss_pred cCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc-
Confidence 9999999999999 9999999999999999999999999999888999999999999999999999999999998874
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL 471 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~ 471 (489)
++ ..|+.+||..|++++.+...+
T Consensus 373 -----~~------------~~vt~~Df~~Al~~v~~~~~~ 395 (405)
T 4b4t_J 373 -----RR------------IHVTQEDFELAVGKVMNKNQE 395 (405)
T ss_dssp -----TC------------SBCCHHHHHHHHHHHHHHHTC
T ss_pred -----CC------------CCcCHHHHHHHHHHHhCcccc
Confidence 11 249999999999998776543
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-46 Score=387.60 Aligned_cols=262 Identities=33% Similarity=0.559 Sum_probs=230.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.+.|+++|+||+|++++|+.|++.+.+|+.+|+.|..+ ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 456799999999999999999999999999999999875 7889999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......+++..+|..|++.... ..|+||+|||+|
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~ViVIaATNrp 358 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR-GNIKVMFATNRP 358 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT-TTEEEEEECSCT
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC-CcEEEEeCCCCc
Confidence 9999999999999999999999999999999999998875432 33445567889999999988654 458999999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.||+|++| ||++.|+|++|+.++|.+||+.++++.....+++++.||+.|.||||+||+.+|++|++.++++.
T Consensus 359 d~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~---- 434 (467)
T 4b4t_H 359 NTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR---- 434 (467)
T ss_dssp TSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT----
T ss_pred ccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 999999999 99999999999999999999999999998889999999999999999999999999999988751
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh--hHHHHHHHH
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL--HAHRYEKFN 480 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~--~~~~y~~~~ 480 (489)
+ ..|+.+||..|++++.++..+ ....|.+|+
T Consensus 435 --~------------~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 --R------------KVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp --C------------SSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred --C------------CccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 1 238999999999998766543 357788886
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=386.99 Aligned_cols=255 Identities=33% Similarity=0.560 Sum_probs=231.8
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
...+.|+++|+||+|++++|+.|++.+.+|+.+|+.|... .++++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 171 ~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 171 EVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp EEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred ccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 3456799999999999999999999999999999999875 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh-hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE-HEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~-~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+.++|+|++++.++.+|..|+..+||||||||+|.+++.|...... .....++++.||..||++... .+|+||+|||+
T Consensus 251 l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~-~~ViVIaaTNr 329 (434)
T 4b4t_M 251 LVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSD-DRVKVLAATNR 329 (434)
T ss_dssp GCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSS-CSSEEEEECSS
T ss_pred hhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCC-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999988654332 234567889999999998754 45889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.||+|++| ||++.|+||+|+.++|.+||+.++++.+...++|++.||+.|.||||+||..+|++|++.++++.
T Consensus 330 p~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~--- 406 (434)
T 4b4t_M 330 VDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG--- 406 (434)
T ss_dssp CCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred chhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999998 99999999999999999999999999888889999999999999999999999999999988751
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
. ..|+.+||.+|+++++|+.++.
T Consensus 407 ---~------------~~i~~~Df~~Al~~v~~~~~~~ 429 (434)
T 4b4t_M 407 ---Q------------SSVKHEDFVEGISEVQARKSKS 429 (434)
T ss_dssp ---C------------SSBCHHHHHHHHHSCSSSCCCC
T ss_pred ---C------------CCcCHHHHHHHHHHHhCCCCcC
Confidence 1 2499999999999999987654
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=382.78 Aligned_cols=253 Identities=34% Similarity=0.547 Sum_probs=229.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
...+.|+++|+||+|++++|++|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.+++++
T Consensus 172 ~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~ 251 (437)
T 4b4t_I 172 KMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSE 251 (437)
T ss_dssp EEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGG
T ss_pred eeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHH
Confidence 3457899999999999999999999999999999999876 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+.++|+|++++.++.+|..|+..+||||||||+|+++..|..... ......+++++||+.||++... .+|+||+|||+
T Consensus 252 l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~-~~ViVIaATNr 330 (437)
T 4b4t_I 252 LIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDR-GDVKVIMATNK 330 (437)
T ss_dssp GCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCS-SSEEEEEEESC
T ss_pred hhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCC-CCEEEEEeCCC
Confidence 999999999999999999999999999999999999998854332 2234567889999999988654 45899999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.||+|++| ||+..|+|++||.++|.+||+.++++.....++|++.||+.|.||||+||+.+|++|++.++++
T Consensus 331 pd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~---- 406 (437)
T 4b4t_I 331 IETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE---- 406 (437)
T ss_dssp STTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT----
T ss_pred hhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc----
Confidence 9999999999 9999999999999999999999999998888999999999999999999999999999998874
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
++ ..|+.+||..|++++.|+..
T Consensus 407 --~~------------~~It~eDf~~Al~rv~~~~~ 428 (437)
T 4b4t_I 407 --RR------------MQVTAEDFKQAKERVMKNKV 428 (437)
T ss_dssp --TC------------SCBCHHHHHHHHHHHHHHHC
T ss_pred --CC------------CccCHHHHHHHHHHHhCCCC
Confidence 11 24999999999999887654
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=384.65 Aligned_cols=263 Identities=33% Similarity=0.575 Sum_probs=229.6
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
....+.|+++|+||+|++++|+.|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.++++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 34556799999999999999999999999999999999875 78889999999999999999999999999999999999
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
++.++|+|++++.++.+|..|+..+||||||||+|.+++.|.... .......++++.||..|||+... ..++||+|||
T Consensus 250 ~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~-~~vivI~ATN 328 (437)
T 4b4t_L 250 GIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNL-GQTKIIMATN 328 (437)
T ss_dssp GTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCT-TSSEEEEEES
T ss_pred hhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCC-CCeEEEEecC
Confidence 999999999999999999999999999999999999998875432 23334567889999999998654 4588999999
Q ss_pred CCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 356 LPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 356 ~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
+|+.||+|++| ||++.|+||+|+.++|.+||+.++++.....+.|++.+|+.|.||||+||..+|++|++.++++
T Consensus 329 rp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~--- 405 (437)
T 4b4t_L 329 RPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD--- 405 (437)
T ss_dssp STTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT---
T ss_pred CchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc---
Confidence 99999999998 6999999999999999999999999988888999999999999999999999999999988764
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhhHHHHHHHHH
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLHAHRYEKFNA 481 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~~~~y~~~~~ 481 (489)
+. ..|+.+||.+|++++.|+.. .+.+.+|.+
T Consensus 406 ---~~------------~~i~~~d~~~Al~~v~~~~k--~e~~~e~~K 436 (437)
T 4b4t_L 406 ---DR------------DHINPDDLMKAVRKVAEVKK--LEGTIEYQK 436 (437)
T ss_dssp ---TC------------SSBCHHHHHHHHHHHHHTCC-----------
T ss_pred ---CC------------CCCCHHHHHHHHHHHHhccC--cccchhhhc
Confidence 11 24999999999999988643 334444543
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-46 Score=414.68 Aligned_cols=287 Identities=34% Similarity=0.613 Sum_probs=197.5
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.....|+++|++++|++++|+.|++.+.+++.+|+.|..+ ..+++++|||||||||||++|+++|++++.+|+.+++++
T Consensus 467 ~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~ 546 (806)
T 3cf2_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHH
T ss_pred ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccch
Confidence 3445688999999999999999999999999999999876 788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+.++|+|++++.++.+|..|+..+||||||||+|++++.|+.. ...+...++++++||.+|||+... .+|+||+|||+
T Consensus 547 l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~-~~V~vi~aTN~ 625 (806)
T 3cf2_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK-KNVFIIGATNR 625 (806)
T ss_dssp HHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS-SSEEEECC-CC
T ss_pred hhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999999988643 334556778999999999999654 45999999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.||+|++| ||++.+++|+|+.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++|+.+..
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~~ 705 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIES 705 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHHHHC-
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999 99999999999999999999999999998889999999999999999999999999999999986532
Q ss_pred hhhhh-------ccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchh
Q 011305 435 LEGRQ-------EVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 486 (489)
Q Consensus 435 le~~~-------~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 486 (489)
..... ...........++|+++||.+|+++++||+++ +++.|++|.+.|++.
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 706 EIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp ----------------------CCC----CCTTTC---------------CCCC------
T ss_pred hhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 11100 00001111223569999999999999999886 689999999988754
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=369.41 Aligned_cols=252 Identities=37% Similarity=0.608 Sum_probs=227.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+.|+++|+||+|++++|+.|++.+.+|+.+|+.|... ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 456799999999999999999999999999999999875 7888999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.++|+|++++.++.+|..|+..+||||||||+|.++..|.... .......+++++||+.|||+.... +++||+|||+|
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~aTN~~ 321 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIMATNRA 321 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEEEESCS
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEEecCCh
Confidence 9999999999999999999999999999999999999875432 223345778999999999986544 58999999999
Q ss_pred CcccHHHHh--hcccccccC-CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 358 WELDAAMLR--RLEKRILVP-LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~-~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
+.||+|++| ||+..|+|| +|+.++|..||+.++++.+...+.|++.+|..|.||||+||..+|++|++.++++
T Consensus 322 ~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~---- 397 (428)
T 4b4t_K 322 DTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK---- 397 (428)
T ss_dssp SSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred hhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC----
Confidence 999999999 999999997 8999999999999999988888999999999999999999999999999998874
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHHhhh-CCChh
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIALKNT-RPSAH 470 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL~~~-~ps~~ 470 (489)
++ ..|+.+||.+|+.+. +++.+
T Consensus 398 --~~------------~~i~~~d~~~A~~~~~~~~~~ 420 (428)
T 4b4t_K 398 --NR------------YVILQSDLEEAYATQVKTDNT 420 (428)
T ss_dssp --TC------------SSBCHHHHHHHHHHHSCSCCC
T ss_pred --CC------------CCCCHHHHHHHHHHhhCccCC
Confidence 11 239999999999764 55543
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=353.38 Aligned_cols=284 Identities=48% Similarity=0.828 Sum_probs=246.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~s~l 278 (489)
..+.|+++|+||+|++++|+.|++.+.+++.+++.|.+...+++++||+||||||||++|+++|+++ +.+++.++++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 3467899999999999999999999999999999998777788999999999999999999999999 899999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.+.+.|..++.++.+|..++..+|+||||||+|.+.+.++.. ......+++++++..++++......++||++||.|+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPW 160 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTT
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcc
Confidence 999999999999999999999999999999999999877653 234567889999999999876667799999999999
Q ss_pred cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 359 ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 359 ~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
.++++++|||+..+++++|+.++|.+||+.++...+.. .+.+++.|++.+.||+|+||..+|++|++.++++......-
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~ 240 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 240 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999877654 45678999999999999999999999999999987642110
Q ss_pred hh--c------------------------------cCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhc
Q 011305 438 RQ--E------------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYG 484 (489)
Q Consensus 438 ~~--~------------------------------~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g 484 (489)
.. . ..+.+. ....+|+++||..|++.++||++. ++..|++|.+.||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 241 KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDK-LLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp EEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGG-BCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred hhhccccccccccccccccccccccccchhhcccccccccc-ccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 00 0 000000 012479999999999999999875 6899999999999
Q ss_pred hh
Q 011305 485 SE 486 (489)
Q Consensus 485 ~~ 486 (489)
++
T Consensus 320 ~~ 321 (322)
T 1xwi_A 320 QE 321 (322)
T ss_dssp SC
T ss_pred cC
Confidence 86
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=350.44 Aligned_cols=286 Identities=49% Similarity=0.793 Sum_probs=245.3
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+....|+++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.+++.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 35567899999999999999999999999999999998887788899999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....+++++.++..+++.......++||+|||.|
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~ 164 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIP 164 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccccCCceEEEEecCCh
Confidence 9999999999999999999999999999999999998876432 22335678899999999887667779999999999
Q ss_pred CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 358 WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 358 ~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
+.+++++++||+..++++.|+.++|.+||+.++...+.. .+.+++.+++.+.||+++||..+|++|++.++++......
T Consensus 165 ~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~ 244 (322)
T 3eie_A 165 WQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244 (322)
T ss_dssp GGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEE
T ss_pred hhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999999999999999999999999887655 4567899999999999999999999999999998765421
Q ss_pred hhhc--------------------------cCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchh
Q 011305 437 GRQE--------------------------VAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSE 486 (489)
Q Consensus 437 ~~~~--------------------------~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~ 486 (489)
.... ..+.+ .....+||++||.+|++.++||++. ++..|++|++.||++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEAD-ELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EEECC----CCCCEEECCSSCTTEEEEEGGGSCSS-CBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhhccccccccccccccccccccccccccccccc-cccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 1000 00011 1123579999999999999999875 689999999999986
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=347.82 Aligned_cols=293 Identities=48% Similarity=0.797 Sum_probs=233.5
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+...+...+....++++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 33 ~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 33 LRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp --------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred HHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 34445566667788999999999999999999999999999999988777889999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+.++++++.+.+.|..++.++.+|..++...|+||||||+|.+.+.+... .....++++++|+..|+++......++|
T Consensus 113 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 113 FSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp EEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred EEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 99999999999999999999999999999999999999999998876543 3345677889999999988666667999
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
|++||.++.++++++|||+..+++++|+.++|.+||+.++...+.. .+.+++.|++.+.||+|+||..+|++|++.+++
T Consensus 191 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~ 270 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIR 270 (355)
T ss_dssp EEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999877654 456789999999999999999999999999999
Q ss_pred HHHHHhhhhh------------cc--------------CCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHH
Q 011305 430 RLMVLLEGRQ------------EV--------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNAD 482 (489)
Q Consensus 430 R~~~~le~~~------------~~--------------~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~ 482 (489)
+......-.. .. .+.+. ....+|+++||..|++.++||++. ++..|++|.+.
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~ 349 (355)
T 2qp9_X 271 KIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADE-LKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRD 349 (355)
T ss_dssp HHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGG-BCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhccccccccccCcCCccccchhhcccccccccc-cccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 8654210000 00 00000 112469999999999999999875 58999999999
Q ss_pred hchh
Q 011305 483 YGSE 486 (489)
Q Consensus 483 ~g~~ 486 (489)
||++
T Consensus 350 ~~~~ 353 (355)
T 2qp9_X 350 FGQE 353 (355)
T ss_dssp TC--
T ss_pred hccC
Confidence 9986
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=351.89 Aligned_cols=293 Identities=47% Similarity=0.815 Sum_probs=238.1
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-CCc
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-KTT 269 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-~~~ 269 (489)
+...+...+....|+++|++|+|++.+++.|++.+.+++.+++.|.....+++++||+||||||||++|+++|+++ +.+
T Consensus 116 ~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~ 195 (444)
T 2zan_A 116 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 195 (444)
T ss_dssp --------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSE
T ss_pred HHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3445566677788999999999999999999999999999999988766778999999999999999999999999 899
Q ss_pred EEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 011305 270 FFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (489)
Q Consensus 270 ~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~vi 349 (489)
|+.++++++.+.+.|..+..++.+|..++...|+||||||+|.+.+.+.... ....+++++.|+..++++......++
T Consensus 196 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--SEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp EEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--CGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred EEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--ccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 9999999999999999999999999999999999999999999987765432 33456788999999998866567799
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
||+|||.|+.++++++|||+..+++++|+.++|..||+.++...+.. .+.+++.|+..+.||+|+||..+|++|++.++
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~ 353 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPV 353 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876653 45678999999999999999999999999999
Q ss_pred HHHHHHhhhhh--c-------------c-----------------CCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHH
Q 011305 429 RRLMVLLEGRQ--E-------------V-----------------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHR 475 (489)
Q Consensus 429 rR~~~~le~~~--~-------------~-----------------~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~ 475 (489)
++......-.. . . .+.+.. ...+||++||..|++.++||++. ++..
T Consensus 354 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~df~~a~~~~~ps~~~~~~~~ 432 (444)
T 2zan_A 354 RKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKL-LEPVVSMWDMLRSLSSTKPTVNEQDLLK 432 (444)
T ss_dssp HHHHHCSEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCB-CCCCEEHHHHHHHHHTCCCSCCHHHHHH
T ss_pred HHHHhhhhhhhhccccccccccccccccccCCCCcccchhcccccCchhhc-cCCccCHHHHHHHHHhCCCCCCHHHHHH
Confidence 98764310000 0 0 000101 12479999999999999999875 6899
Q ss_pred HHHHHHHhchh
Q 011305 476 YEKFNADYGSE 486 (489)
Q Consensus 476 y~~~~~~~g~~ 486 (489)
|++|++.||++
T Consensus 433 ~~~~~~~~~~~ 443 (444)
T 2zan_A 433 LKKFTEDFGQE 443 (444)
T ss_dssp HHHHTSSCTTT
T ss_pred HHHHHHHHcCC
Confidence 99999999986
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=327.25 Aligned_cols=286 Identities=34% Similarity=0.621 Sum_probs=240.8
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
+++....|+++|++|+|++.+++.|++.+.+++.+|+.|... ..+++++||+||||||||++|+++|++++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred ccccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 455667899999999999999999999999999999988765 5778999999999999999999999999999999999
Q ss_pred cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 276 SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+++.+.+.|..++.++.+|..+....|+||||||+|.+...++.... ......++++.|+..++++.. ...++||++|
T Consensus 83 ~~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~v~vi~at 161 (301)
T 3cf0_A 83 PELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-KKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-TSSEEEEEEE
T ss_pred HHHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-CCCEEEEEec
Confidence 99999999999999999999999999999999999999987643211 111234577889999998754 3458999999
Q ss_pred CCCCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 355 NLPWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 355 n~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
|.++.+++++++ ||+..++++.|+.++|.+|++.+++..+...+.+++.++..+.||+|+||..+|++|+..+.++..
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~~ 241 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 241 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998 999999999999999999999999888877788999999999999999999999999999998765
Q ss_pred HHhhhhhcc-------CCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHh
Q 011305 433 VLLEGRQEV-------APDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADY 483 (489)
Q Consensus 433 ~~le~~~~~-------~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~ 483 (489)
......... ...+......+|+.+||..|++.++||.+. ++..|++|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 242 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp HHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 322110000 000001112469999999999999999875 589999999988
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=369.82 Aligned_cols=265 Identities=34% Similarity=0.570 Sum_probs=235.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..+.++|+||+|+++++++|++.+.+|+.+|+.|..+ ..+++|||||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 4578999999999999999999999999999999986 788899999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
+|.|++++.++.+|..|+..+||||||||+|.++++++... ++..++++++|+..|+++.... .|+||++||+++.+
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN~~d~L 353 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQRA-HVIVMAATNRPNSI 353 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGGG-CEEEEEECSSTTTS
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhcccccC-CEEEEEecCChhhc
Confidence 99999999999999999999999999999999999876543 3345789999999999986544 58999999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
|++++| ||++.|+++.|+.++|.+||+.++++.....++|+..+|..|.||+|+||..+|++|++.+++|........
T Consensus 354 D~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 354 DPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp CTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred CHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999 999999999999999999999999999988999999999999999999999999999999999877655433
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
......+.. ....|+.+||..|++.++|+..
T Consensus 434 ~~~~~~e~~-~~~~v~~~Df~~Al~~~~ps~~ 464 (806)
T 3cf2_A 434 DETIDAEVM-NSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp CCCCSHHHH-HHCEECTTHHHHHHSSSSCCCC
T ss_pred ccccchhhh-ccceeeHHHHHHHHHhCCCccc
Confidence 221111100 1124899999999999999865
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-38 Score=322.22 Aligned_cols=288 Identities=43% Similarity=0.745 Sum_probs=240.7
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+.+.+.+++....++++|++|+|++.+++.|++.+.+++.+++.+.....+++++||+||||||||++|+++|++++.++
T Consensus 66 ~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~ 145 (357)
T 3d8b_A 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATF 145 (357)
T ss_dssp HHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 34456777888889999999999999999999999999999998877777789999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVF 349 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~vi 349 (489)
+.++++++...+.|..+..++.+|..+....|+||||||+|.+...++.. ......++++.++..+++... ....++
T Consensus 146 ~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~~~~~v~ 223 (357)
T 3d8b_A 146 FSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDRIL 223 (357)
T ss_dssp EEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC----CCCCEE
T ss_pred EEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhcccccCCCCEE
Confidence 99999999999999999999999999999999999999999998765432 234456788999999998753 345789
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
||++||.++.+++++++||...++++.|+.++|.+|++.++...... .+.+++.+++.+.||+++||..+|++|+..++
T Consensus 224 vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~i 303 (357)
T 3d8b_A 224 VVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPI 303 (357)
T ss_dssp EEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHH
T ss_pred EEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998766544 34468889999999999999999999999988
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-hhHHHHHHHHHHhchh
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-LHAHRYEKFNADYGSE 486 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-~~~~~y~~~~~~~g~~ 486 (489)
+++.+.... .+. .....+|+.+||..|++.++||.. ++++.|++|.+.||+.
T Consensus 304 r~l~~~~~~--~~~----~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 304 RSLQTADIA--TIT----PDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHCCC----------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHhhhhhhc--ccc----ccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 864221110 011 122356999999999999999976 4689999999999975
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=313.02 Aligned_cols=290 Identities=46% Similarity=0.763 Sum_probs=234.9
Q ss_pred HHHHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+.+.+.+++....++++|++|+|++.+++.|.+.+..+..+++.+.+...+++++||+||||||||++|+++|++++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~ 82 (297)
T 3b9p_A 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF 82 (297)
T ss_dssp HHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe
Confidence 45566778888889999999999999999999999999999998887767789999999999999999999999999999
Q ss_pred EEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC--CCcE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--DELV 348 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~--~~~v 348 (489)
+.++++++.+.+.|.....++.+|..+....|+||||||+|.+...++... ......+++.++..+++.... ...+
T Consensus 83 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~~~~~v 160 (297)
T 3b9p_A 83 LNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNPDGDRI 160 (297)
T ss_dssp EEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC------CE
T ss_pred EEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccCCCCcE
Confidence 999999999999999999999999999999999999999999987764322 222356778888888876433 3568
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC-CCCCHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE-ESLPYDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~-~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
+||++||.++.+++++++||...++++.|+.++|..|++.++...+.. .+.+++.+++.+.|++++|+..++++|+..+
T Consensus 161 ~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a 240 (297)
T 3b9p_A 161 VVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEP 240 (297)
T ss_dssp EEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHH
T ss_pred EEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998776554 2345788999999999999999999999999
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchhhc
Q 011305 428 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEIL 488 (489)
Q Consensus 428 ~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~~~ 488 (489)
+++......... .......|+.+||..|++.++||... .+..|++|.+.||+..+
T Consensus 241 ~r~~~~~~~~~~------~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 296 (297)
T 3b9p_A 241 IRELNVEQVKCL------DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGDITI 296 (297)
T ss_dssp HHTCC--------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC--------
T ss_pred HHHHhhhhcccc------cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCeec
Confidence 886432211110 11223469999999999999999765 58999999999998654
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=314.76 Aligned_cols=287 Identities=43% Similarity=0.701 Sum_probs=231.1
Q ss_pred HHhhhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 193 ESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 193 ~~~~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..+.+.+....++++|++|+|++.+++.|.+.+..+..+++.+.....+++++||+||||||||++|+++|++++.+|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~ 178 (389)
T 3vfd_A 99 NLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFN 178 (389)
T ss_dssp TTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred HHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence 34556777788999999999999999999999999999999888777778999999999999999999999999999999
Q ss_pred EeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-CCCcEEEE
Q 011305 273 ISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-SDELVFVL 351 (489)
Q Consensus 273 v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-~~~~viVI 351 (489)
++++++.+.+.|..+..++.+|..+....|+||||||+|.+...+... ......++++.|+..+++... ....++||
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI 256 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSAGDDRVLVM 256 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC-----CEEEE
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhcccccCCCCEEEE
Confidence 999999999999999999999999999999999999999998765432 233356788899999987754 34568999
Q ss_pred EEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHH
Q 011305 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRR 430 (489)
Q Consensus 352 atTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR 430 (489)
++||.++.+++++++||...++++.|+.++|..||+.++....... +.++..++..+.|+++++|..++++|+..++++
T Consensus 257 ~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~re 336 (389)
T 3vfd_A 257 GATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRE 336 (389)
T ss_dssp EEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHT
T ss_pred EecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998999999999999999999987765543 346788999999999999999999999998886
Q ss_pred HHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhh-hHHHHHHHHHHhchhh
Q 011305 431 LMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHL-HAHRYEKFNADYGSEI 487 (489)
Q Consensus 431 ~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~-~~~~y~~~~~~~g~~~ 487 (489)
+..... ..........|+.+||..+++.++|+... .+..|++|.+.||++.
T Consensus 337 l~~~~~------~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~~ 388 (389)
T 3vfd_A 337 LKPEQV------KNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDTT 388 (389)
T ss_dssp SCCC---------CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC---
T ss_pred hhhhhh------hccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCcc
Confidence 432111 11112223469999999999999999775 5899999999999864
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-36 Score=299.93 Aligned_cols=261 Identities=33% Similarity=0.567 Sum_probs=206.6
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..|+++|+||+|++++|+.|++.+.+++.+++.+... ...++|++|+||||||||++++++|.+++.+++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 3578999999999999999999999999999988875 677788999999999999999999999999999999999988
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
.+.+..++.+..+|..++...|+++|+||+|.+...+... ......++.+.++..|++.... ..++++++||+|+.+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~~~~~~~~~~l~~Lsgg~~~-~~~i~ia~tn~p~~L 159 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETGASVRVVNQLLTEMDGLEAR-QQVFIMAATNRPDII 159 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-TCEEEEEEESCGGGS
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cchHHHHHHHHHHHhhhccccc-CCEEEEeecCChhhC
Confidence 8888889999999999988889999999999987654321 1122345678899999988543 458899999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCC---CCCCCCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHHH
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQ---TGEESLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLMV 433 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~---~~~~~~dl~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~~~ 433 (489)
|++++| ||++.++++.|+.++|.+||+.+++.. ....+.+++.++..+ +||||+||..+|++|++.++++...
T Consensus 160 D~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 160 DPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMA 239 (274)
T ss_dssp CHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred CHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 999998 999999999999999999999998643 345678999999874 5999999999999999999887543
Q ss_pred HhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 434 LLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 434 ~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
..... . ......|+++||++|+++++||.+++
T Consensus 240 ~~~~~------~-~~~~~~i~~~df~~al~~~~ps~~~~ 271 (274)
T 2x8a_A 240 RQKSG------N-EKGELKVSHKHFEEAFKKVRSSISKK 271 (274)
T ss_dssp -----------------CCBCHHHHHHHHTTCCCCC---
T ss_pred hcccc------c-cccCCeecHHHHHHHHHHhcCCCChh
Confidence 21110 0 01123599999999999999998753
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-34 Score=282.54 Aligned_cols=268 Identities=35% Similarity=0.561 Sum_probs=218.0
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...|+++|++|+|++.+++.|.+.+..++.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 35678899999999999999999999999998888765 56778999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.|.....+..+|..+....|+||||||+|.+.+++..... ........+..++..+++.... ..++||+|||.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~-~~~~vI~ttn~~~ 167 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR-GDVKIIGATNRPD 167 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS-SSEEEEEECSCGG
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC-CCEEEEEeCCCch
Confidence 9999999999999999999999999999999999877654321 1223455667778888766543 4588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+++++++ ||+..+.++.|+.++|.+|++.++.......+.++..++..+.|++++|++.+++.|...++++.
T Consensus 168 ~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~----- 242 (285)
T 3h4m_A 168 ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL----- 242 (285)
T ss_dssp GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----
Confidence 99999999 99999999999999999999999988888888899999999999999999999999998876641
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh---hhHHHHHHHHHHhchhh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH---LHAHRYEKFNADYGSEI 487 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~---~~~~~y~~~~~~~g~~~ 487 (489)
...|+.+||.+|+..+.+... ..-..|..|...||+.-
T Consensus 243 -------------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (285)
T 3h4m_A 243 -------------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHHHH 283 (285)
T ss_dssp -------------CSSBCHHHHHHHHHHHHHHHCCC------------------
T ss_pred -------------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhccCC
Confidence 124999999999998865433 23577899999999753
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=311.85 Aligned_cols=280 Identities=33% Similarity=0.531 Sum_probs=228.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
+.++|++|+|++.+++.|++.+..++.+++.+..+ ..+++++||+||||||||++|+++|++++.+|+.++|+++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56789999999999999999999999999998876 67778999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
.|+....++.+|..+....|++|||||+|.+.++++.. ..+...++++.|+..|++.... ..++||+|||.++.+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~--~~~~~~~~~~~LL~~ld~~~~~-~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT--HGEVERRIVSQLLTLMDGLKQR-AHVIVMAATNRPNSIDP 355 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC--CCHHHHHHHHHHHHHHHHSCTT-SCEEEEEEESCGGGBCG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc--cchHHHHHHHHHHHHhhccccC-CceEEEEecCCccccCH
Confidence 99999999999999999999999999999999876543 2345678899999999977543 45889999999999999
Q ss_pred HHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 363 AMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 363 al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
++++ ||...++++.|+.++|.+||+.++.......+.++..++..+.||+++||..+|++|+..++++.....+....
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999 99999999999999999999999999888888899999999999999999999999999998864432211110
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh---HHHHHHHHHHhchhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNTRPSAHLH---AHRYEKFNADYGSEI 487 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~---~~~y~~~~~~~g~~~ 487 (489)
..+.. ......|+++||..|++.++||...+ ...-..|.+.+|-+-
T Consensus 436 ~~~~~-~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~~~ 484 (489)
T 3hu3_A 436 TIDAE-VMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGRSH 484 (489)
T ss_dssp SCCHH-HHHHCCBCHHHHHHHHTSHHHHHHHGGGC---------------
T ss_pred ccchh-hcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCCcc
Confidence 00000 00123599999999999999998765 366788999999654
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=290.26 Aligned_cols=261 Identities=36% Similarity=0.549 Sum_probs=215.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.+.++|+||+|++++++++++.+.. +..+..+... ...++++||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998765 5567666655 5677899999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
+.|.....++.+|..+....|+||||||+|.+..+++... .......++++.|+..|+++.. ...++||++||.++.+
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-KEGIIVMAATNRPDIL 167 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-GGTEEEEEEESCGGGS
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-CCCEEEEEecCChhhh
Confidence 9998899999999999999999999999999988765321 1223345678999999997754 3458999999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~ 438 (489)
|+++++ ||+..+.++.|+.++|.+|++.+++..+...+.++..++..+.|++|+||.++|++|+..+.++ +
T Consensus 168 d~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~------~- 240 (476)
T 2ce7_A 168 DPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAARE------G- 240 (476)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------T-
T ss_pred chhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHc------C-
Confidence 999988 9999999999999999999999999888777888999999999999999999999999876642 0
Q ss_pred hccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-------hhHHHHHHHHHHh
Q 011305 439 QEVAPDDELPQIGPIRPEDVEIALKNTRPSAH-------LHAHRYEKFNADY 483 (489)
Q Consensus 439 ~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-------~~~~~y~~~~~~~ 483 (489)
...|+.+||..|+.++.+... .....-..|++..
T Consensus 241 -----------~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G 281 (476)
T 2ce7_A 241 -----------RDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAG 281 (476)
T ss_dssp -----------CSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHH
T ss_pred -----------CCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhh
Confidence 124999999999998875422 2234455565543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=265.83 Aligned_cols=247 Identities=33% Similarity=0.519 Sum_probs=208.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...++.+|++|+|++.+++.+.+.+.. +.+++.+... ...+++++|+||||||||++|+++|++++.+++.++++++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 456788999999999999999997765 5666665554 45678999999999999999999999999999999999999
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch-hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~-~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.|..++.++.+|..+....|+++||||+|.+...++.... ......+.++.++..+++... ...++||++||.++
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~~vI~~tn~~~ 161 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRPD 161 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc-CCCEEEEEeeCCch
Confidence 9999999999999999999888999999999999887653211 122334678889999998754 44588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+++++++ ||+..+.++.|+.++|.+|++.+++..+...+.++..++..+.||+++||..++++|+..+.++
T Consensus 162 ~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 235 (257)
T 1lv7_A 162 VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------ 235 (257)
T ss_dssp TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 9999999999999999999999998887777888899999999999999999999998876653
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
+ ...|+.+||.+|++.+..
T Consensus 236 ~------------~~~i~~~~~~~a~~~~~~ 254 (257)
T 1lv7_A 236 N------------KRVVSMVEFEKAKDKIMM 254 (257)
T ss_dssp T------------CSSBCHHHHHHHHHHHTT
T ss_pred C------------CCcccHHHHHHHHHHHhc
Confidence 1 124999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=4.7e-32 Score=264.50 Aligned_cols=247 Identities=34% Similarity=0.522 Sum_probs=191.8
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
|+++|++|+|++.+++.+++.+.. +.+++.+... ..+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 467899999999999999998765 5666665544 56778999999999999999999999999999999999998888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
.+.....++.+|..+....|+||||||+|.+...+..... ........+..++..+++... ...++||++||.++.+
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~-~~~~~vi~~tn~~~~l 158 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT-TDHVIVLASTNRADIL 158 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT-TCCEEEEEEESCGGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC-CCCEEEEecCCChhhc
Confidence 8888889999999999888999999999999876543211 112233567788888887643 3468899999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC--HHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLP--YDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d--l~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
++++++ ||+..++++.|+.++|.+|++.++...+...+.+ ...++..+.|++++||..++++|+..+.++..
T Consensus 159 d~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~---- 234 (262)
T 2qz4_A 159 DGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGH---- 234 (262)
T ss_dssp GSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC----------
T ss_pred CHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCC----
Confidence 999999 9999999999999999999999998776654443 46789999999999999999999987765311
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
..|+.+||..|++++.++..
T Consensus 235 --------------~~i~~~d~~~a~~~~~~~~~ 254 (262)
T 2qz4_A 235 --------------TSVHTLNFEYAVERVLAGTA 254 (262)
T ss_dssp ----------------CCBCCHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHhccChh
Confidence 24899999999998877654
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=277.45 Aligned_cols=260 Identities=34% Similarity=0.533 Sum_probs=216.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
+.++|++|+|+++++..+++.+.. +..+..+... ...++++||+||||||||++|+++|.+++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999998765 4566666554 56678999999999999999999999999999999999999888
Q ss_pred ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCccc
Q 011305 283 RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELD 361 (489)
Q Consensus 283 ~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld 361 (489)
.|.....++.+|+.+....|+|+||||+|.+...++.. ........+.++.++..|++... ...++++++||+|+.+|
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-~~~viviAatn~p~~LD 183 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDILD 183 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-SCCCEEEECCSCGGGSC
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-CccEEEEEecCChhhcC
Confidence 88888889999999887889999999999998765431 11233345678899999998764 34578999999999999
Q ss_pred HHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhh
Q 011305 362 AAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 439 (489)
Q Consensus 362 ~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~ 439 (489)
++++| ||+..+.++.|+.++|.+||+.+++......+.++..++..+.|++|+||++++++|+..+.++
T Consensus 184 ~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~--------- 254 (499)
T 2dhr_A 184 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE--------- 254 (499)
T ss_dssp TTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT---------
T ss_pred cccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh---------
Confidence 99998 8999999999999999999999998877777888999999999999999999999998865432
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHhhhCCChh-------hhHHHHHHHHHHh
Q 011305 440 EVAPDDELPQIGPIRPEDVEIALKNTRPSAH-------LHAHRYEKFNADY 483 (489)
Q Consensus 440 ~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~-------~~~~~y~~~~~~~ 483 (489)
....|+.+||..|+.++.+... .+......|++..
T Consensus 255 ---------~~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g 296 (499)
T 2dhr_A 255 ---------GRRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAG 296 (499)
T ss_dssp ---------CCSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHH
T ss_pred ---------CCCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHH
Confidence 0124999999999999876532 2334555666543
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=248.66 Aligned_cols=244 Identities=36% Similarity=0.588 Sum_probs=199.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+....|.++|++++|+++++..+++.... ...+..+... ...+++++|+||||||||+++++++..++.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 34567889999999999999999987765 3444444443 556678999999999999999999999999999999998
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
+...+.+...+.+..+|+.+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~-~~~~i~~a~t~~ 163 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNR 163 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESC
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC-CCCEEEEEccCC
Confidence 8887777778888999999887788999999999998765421 11122345677889999987754 345889999999
Q ss_pred CCcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHH
Q 011305 357 PWELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVL 434 (489)
Q Consensus 357 p~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~ 434 (489)
|+.+|++++| ||+..++++.|+.++|.+||+.+++......+.++..++..+.|++++||..++++|+..+.++
T Consensus 164 p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~---- 239 (254)
T 1ixz_A 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE---- 239 (254)
T ss_dssp GGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT----
T ss_pred chhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh----
Confidence 9999999998 8999999999999999999999988777777888999999999999999999999998876542
Q ss_pred hhhhhccCCCCCCCCCCCCCHHHHHHHH
Q 011305 435 LEGRQEVAPDDELPQIGPIRPEDVEIAL 462 (489)
Q Consensus 435 le~~~~~~~~~~~~~~~~It~eDf~~AL 462 (489)
+ ...|+.+||++|+
T Consensus 240 --~------------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 240 --G------------RRKITMKDLEEAA 253 (254)
T ss_dssp --T------------CSSBCHHHHHHHT
T ss_pred --c------------CCCcCHHHHHHHh
Confidence 0 1249999999986
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-33 Score=272.05 Aligned_cols=253 Identities=34% Similarity=0.526 Sum_probs=205.8
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.++.+|++|+|++.+++.+.+.+.. +.+++.+... ...++++||+||||||||++|+++|++++.+++.++++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 456788999999999999999997764 6677776654 56678899999999999999999999999999999999998
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch--hhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS--EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~--~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
..+.|.....++.+|..+....|+||||||+|.+...+..... ......++++.|+..+++.......++||+|||.+
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~ 161 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRP 161 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCc
Confidence 8888877777788899998889999999999999876432110 00001124566788888776555668899999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+++++++ ||+..+.++.|+.++|.++|+.++.......+.+++.++..+.|++|+||..++++|+..+.++
T Consensus 162 ~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~----- 236 (268)
T 2r62_A 162 EILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRN----- 236 (268)
T ss_dssp TTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS-----
T ss_pred hhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh-----
Confidence 999999998 9999999999999999999999998877777778889999999999999999999888754321
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChhhh
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAHLH 472 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~~~ 472 (489)
....|+.+||..+++.+.|+....
T Consensus 237 -------------~~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 237 -------------NQKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp -------------CCCSCCHHHHHTSCTTCCCCCC--
T ss_pred -------------ccCCcCHHHHHHHHHHHhhcchhh
Confidence 012499999999999999987643
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=242.22 Aligned_cols=243 Identities=37% Similarity=0.576 Sum_probs=198.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
...++++|++++|++++++.+++.+... ..+..+... ...+++++|+||||||||+++++++..++.+++.+++.++.
T Consensus 32 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~ 110 (278)
T 1iy2_A 32 TEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFV 110 (278)
T ss_dssp CCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred cCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHH
Confidence 3447889999999999999999877653 344444433 45567899999999999999999999999999999999888
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc-chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA-RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~-~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
..+.+.....+..+|+.+....|+++++||+|.+...+... ..........++.++..+++... ...++++++||.|+
T Consensus 111 ~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-~~~~i~~a~t~~p~ 189 (278)
T 1iy2_A 111 EMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPD 189 (278)
T ss_dssp HSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-TCCEEEEEEESCTT
T ss_pred HHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-CCCEEEEEecCCch
Confidence 77777777888999999987888999999999997654321 01122335667888889987753 34588999999999
Q ss_pred cccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhh
Q 011305 359 ELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLE 436 (489)
Q Consensus 359 ~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le 436 (489)
.+|+++++ ||+..++++.|+.++|.+||+.+++......+.++..++..+.|++++||+.++++|+..+.++
T Consensus 190 ~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~------ 263 (278)
T 1iy2_A 190 ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 263 (278)
T ss_dssp SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------
T ss_pred hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 99999998 8999999999999999999999988777777888999999999999999999999998766542
Q ss_pred hhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 437 GRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 437 ~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+ ...|+.+||++|++
T Consensus 264 ~------------~~~I~~~dl~~a~~ 278 (278)
T 1iy2_A 264 G------------RRKITMKDLEEAAS 278 (278)
T ss_dssp T------------CCSBCHHHHHHHTC
T ss_pred C------------CCCcCHHHHHHHhC
Confidence 0 12499999999863
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.4e-26 Score=226.05 Aligned_cols=174 Identities=21% Similarity=0.295 Sum_probs=134.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHH----HhcCCcEEEEchhhhHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELA----RHHAPSTIFLDEIDAII 314 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~ 314 (489)
..+++++||+||||||||++|+++|++++.+++.++++++.+.+.|..+..++.+|..+ +...|+||||||+|.+.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 46678999999999999999999999999999999999999999999999999999988 56789999999999998
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCCcccHHHHh--hcccccccCCCCHHHH
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 382 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~~Pd~~eR 382 (489)
+.+..........+.+++.|++.+|+.. ....+++||+|||.++.+|++++| ||+..+. .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 8654322222234567789999988543 133468899999999999999997 8988776 5799999
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHH
Q 011305 383 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 383 ~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~ 418 (489)
.+|++.++... +.+.+.+++.+.||++++|..
T Consensus 191 ~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCC----CCCHHHHHHHhCCCCcccHHH
Confidence 99999887643 566889999999999998864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.8e-22 Score=197.42 Aligned_cols=213 Identities=19% Similarity=0.207 Sum_probs=162.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcc----cCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEeccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISASSV 278 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~----~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s~l 278 (489)
+|+|++.+++.+.+.+..... +..+.. ...++.++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 799999999999998876542 222211 13445689999999999999999999988 348999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW 358 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~ 358 (489)
.+.+.|.....+..+|..+. ++||||||+|.+...++.. .....+++.|+..++.. ...+++|++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~~----~~~~~~~~~Ll~~l~~~---~~~~~~i~~~~~~~ 180 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNER----DYGQEAIEILLQVMENN---RDDLVVILAGYADR 180 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHC---TTTCEEEEEECHHH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCcc----cccHHHHHHHHHHHhcC---CCCEEEEEeCChHH
Confidence 99999999888888888773 5899999999997554321 11245677888888732 34467888887653
Q ss_pred -----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHh-------cCCcHHHHHHHHHHHHh
Q 011305 359 -----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERT-------EGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 359 -----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t-------~G~sg~Di~~l~~~A~~ 425 (489)
.+++++++||+..+.|+.|+.+++..|++.++.......+.+ ++.++... ...+++++..+++.+..
T Consensus 181 ~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 181 MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARL 260 (309)
T ss_dssp HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHH
Confidence 257899999999999999999999999999997765543333 44455542 23458999999999998
Q ss_pred HHHHHHHH
Q 011305 426 QPLRRLMV 433 (489)
Q Consensus 426 ~a~rR~~~ 433 (489)
.+..|...
T Consensus 261 ~~~~r~~~ 268 (309)
T 3syl_A 261 RQANRLFT 268 (309)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88777654
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.5e-24 Score=223.69 Aligned_cols=202 Identities=21% Similarity=0.281 Sum_probs=139.3
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK 281 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~ 281 (489)
|...|++++|++++++.+.+.+..... ...+++++||+||||||||++|+++|++++ .+|+.++++++.++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~~~~-------~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVELIKS-------KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHHHHh-------CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 556789999999999999887754321 234668999999999999999999999999 99999999999999
Q ss_pred hccchHHHHHHHHHHH---HhcCCcEEEEchhhhHHhhhcccchhhH--HHH---------------HHHHHHHHHhcCC
Q 011305 282 WRGDSEKLIKVLFELA---RHHAPSTIFLDEIDAIISQRGEARSEHE--ASR---------------RLKTELLIQMDGL 341 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A---~~~~p~VL~IDEiD~l~~~r~~~~~~~~--~~~---------------~i~~~LL~~ldg~ 341 (489)
+.|.++. +..+|..| +...|+||||||+|.+.+++........ ... ++.+.++..++..
T Consensus 105 ~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~ 183 (456)
T 2c9o_A 105 EIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE 183 (456)
T ss_dssp SSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhc
Confidence 9999887 89999999 7788999999999999988754311100 000 1123355555422
Q ss_pred -ccCCCcEEEEEEeCCCCcccHHHHh--hccc--ccccCCC--CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHH
Q 011305 342 -TQSDELVFVLAATNLPWELDAAMLR--RLEK--RILVPLP--DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGS 414 (489)
Q Consensus 342 -~~~~~~viVIatTn~p~~Ld~al~r--Rf~~--~i~~~~P--d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~ 414 (489)
...++.++|++|||.++.+++++++ ||+. .+.+|.| +.++|.+|++.+.. .|++.++..+.| |+
T Consensus 184 ~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--ga 254 (456)
T 2c9o_A 184 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQ 254 (456)
T ss_dssp TCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC---------
T ss_pred cCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hh
Confidence 1234556677999999999999876 9988 5566777 44778888776552 268888999999 99
Q ss_pred HHHHHHHH
Q 011305 415 DIRLVSKE 422 (489)
Q Consensus 415 Di~~l~~~ 422 (489)
|+..+|..
T Consensus 255 dl~~l~~~ 262 (456)
T 2c9o_A 255 DILSMMGQ 262 (456)
T ss_dssp --------
T ss_pred HHHHHHhh
Confidence 99998854
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=190.09 Aligned_cols=221 Identities=18% Similarity=0.168 Sum_probs=155.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSK 281 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~ 281 (489)
|..+|++++|++.+++.+......... ...+++++||+||||||||++|+++|+.++ .+++.+++..+...
T Consensus 39 p~~~~~~ivG~~~~~~~l~~l~~~~~~-------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~ 111 (368)
T 3uk6_A 39 PRQASQGMVGQLAARRAAGVVLEMIRE-------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSL 111 (368)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHHHHT-------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCS
T ss_pred cCcchhhccChHHHHHHHHHHHHHHHc-------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhc
Confidence 444599999999999987765533221 223457999999999999999999999997 48888887664332
Q ss_pred hc-------------------------------------------------cchHHHHHHHHHHHHh---------cCCc
Q 011305 282 WR-------------------------------------------------GDSEKLIKVLFELARH---------HAPS 303 (489)
Q Consensus 282 ~~-------------------------------------------------g~~~~~l~~lf~~A~~---------~~p~ 303 (489)
+. |.....++..+..+.. ..|+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 191 (368)
T 3uk6_A 112 EMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPG 191 (368)
T ss_dssp SSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBC
T ss_pred ccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCc
Confidence 21 1112334444433322 1267
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe-----------CCCCcccHHHHhhccccc
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT-----------NLPWELDAAMLRRLEKRI 372 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT-----------n~p~~Ld~al~rRf~~~i 372 (489)
||||||+|.+.. ..++.|+..++.. ...++++++. |.+..+++++++||.. +
T Consensus 192 vl~IDEi~~l~~-------------~~~~~L~~~le~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 192 VLFIDEVHMLDI-------------ESFSFLNRALESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp EEEEESGGGSBH-------------HHHHHHHHHTTCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred eEEEhhccccCh-------------HHHHHHHHHhhCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 999999998843 2456677777532 2235555443 2467799999999966 8
Q ss_pred ccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCC
Q 011305 373 LVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIG 451 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~ 451 (489)
.+++|+.+++..|++..+.......+ ..++.+++.+.+.+++++..+++.|...+..+ + ..
T Consensus 255 ~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~------~------------~~ 316 (368)
T 3uk6_A 255 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR------K------------GT 316 (368)
T ss_dssp EECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT------T------------CS
T ss_pred EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh------C------------CC
Confidence 99999999999999988876554433 34677888887678899999999887765432 1 12
Q ss_pred CCCHHHHHHHHhhhC
Q 011305 452 PIRPEDVEIALKNTR 466 (489)
Q Consensus 452 ~It~eDf~~AL~~~~ 466 (489)
.|+.+|+.+++..+.
T Consensus 317 ~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 317 EVQVDDIKRVYSLFL 331 (368)
T ss_dssp SBCHHHHHHHHHHSB
T ss_pred CCCHHHHHHHHHHhc
Confidence 499999999998744
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=185.91 Aligned_cols=245 Identities=20% Similarity=0.221 Sum_probs=160.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g~ 285 (489)
++++|++.+++.+...+..+..+....... ...+.++||+||||||||++|+++|+.++.+++.++++++.. .+.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 469999999999998887644333221111 234579999999999999999999999999999999998765 45443
Q ss_pred -hHHHHHHHHHHH-----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEE
Q 011305 286 -SEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLA 352 (489)
Q Consensus 286 -~~~~l~~lf~~A-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIa 352 (489)
....++.++..+ ....++||||||+|.+........ .......+++.|+..+++... ....+++|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~-~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~ 173 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIA 173 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc-cchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEE
Confidence 234455555422 112358999999999987653222 122233467788888885421 223467777
Q ss_pred E----eCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-----------CCC--C-CCCCHHHHHHHhc-----
Q 011305 353 A----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS-----------QTG--E-ESLPYDLLVERTE----- 409 (489)
Q Consensus 353 t----Tn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~-----------~~~--~-~~~dl~~La~~t~----- 409 (489)
+ ++.+..+++++++||+..+.++.|+.+++..|++..+.. ... . .+..++.+++.+.
T Consensus 174 ~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 253 (310)
T 1ofh_A 174 SGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 253 (310)
T ss_dssp EECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH
T ss_pred cCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc
Confidence 7 457788999999999988999999999999999953311 111 1 1112444555442
Q ss_pred --CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 410 --GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 410 --G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
+.+.+++..+++.+...+..+. . ..+ .....|+.+|+.+++....
T Consensus 254 ~~~g~~R~l~~~l~~~~~~~~~~~------~----~~~--~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 254 TENIGARRLHTVMERLMDKISFSA------S----DMN--GQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp SCCCTTHHHHHHHHHHSHHHHHHG------G----GCT--TCEEEECHHHHHHHTCSSS
T ss_pred ccccCcHHHHHHHHHHHHhhhcCC------c----ccc--CCEEEEeeHHHHHHHHhhh
Confidence 3455666666665544322110 0 000 0111399999999998653
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-19 Score=182.44 Aligned_cols=199 Identities=15% Similarity=0.118 Sum_probs=144.9
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+.....+.+|++++|.+.+++.+...+...... ..+..++||+||||||||++|+++|++++.+++.+++..+
T Consensus 19 ~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~ 91 (338)
T 3pfi_A 19 YETSLRPSNFDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMI 91 (338)
T ss_dssp ----CCCCSGGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGC
T ss_pred hhhccCCCCHHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhc
Confidence 445566778999999999999999988664321 1345789999999999999999999999999999999765
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---------------
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------------- 343 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------------- 343 (489)
. ....+...+.. ...+++|||||+|.+... .+..|+..++....
T Consensus 92 ~------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3pfi_A 92 E------KSGDLAAILTN--LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKI 150 (338)
T ss_dssp C------SHHHHHHHHHT--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCC
T ss_pred c------chhHHHHHHHh--ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceec
Confidence 3 12223333322 345689999999988533 34556666653320
Q ss_pred CCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHH
Q 011305 344 SDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 344 ~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~ 422 (489)
....+++|++||....+++++++||+..+.++.|+.+++..+++.++.......+. .++.++..+. .+++++.++++.
T Consensus 151 ~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~-G~~r~l~~~l~~ 229 (338)
T 3pfi_A 151 DLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSR-STPRIALRLLKR 229 (338)
T ss_dssp CCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTT-TCHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 11247899999999999999999999999999999999999999988765544332 3556666444 456777777776
Q ss_pred HHhH
Q 011305 423 AAMQ 426 (489)
Q Consensus 423 A~~~ 426 (489)
+...
T Consensus 230 ~~~~ 233 (338)
T 3pfi_A 230 VRDF 233 (338)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3.8e-20 Score=200.12 Aligned_cols=230 Identities=18% Similarity=0.151 Sum_probs=151.9
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-------
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS------- 280 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~------- 280 (489)
+++++|++++++.+.+.+.......+ .++.+++|+||||||||++|+++|..++.++..+++..+..
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC----------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhH
Confidence 46799999999999887765332222 14578999999999999999999999999999999876543
Q ss_pred --hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC------------CC
Q 011305 281 --KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS------------DE 346 (489)
Q Consensus 281 --~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~------------~~ 346 (489)
.+.|.....+...|..+....| ||||||+|.+...++. ..++.|+..++..... ..
T Consensus 154 ~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 154 RRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp ----------CHHHHHHTTCSSSE-EEEEEESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 4556666666677777765665 9999999999765431 1345677777643211 14
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC-----CCCCC---C---CCCHHHHHHHhcC-CcHH
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP-----SQTGE---E---SLPYDLLVERTEG-YSGS 414 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~-----~~~~~---~---~~dl~~La~~t~G-~sg~ 414 (489)
.+++|+|||.++.+++++++||. .+.++.|+.+++..|++.++. ..+.. . +..+..++....+ ...+
T Consensus 224 ~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR 302 (543)
T 3m6a_A 224 KVLFIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVR 302 (543)
T ss_dssp SCEEEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSH
T ss_pred ceEEEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchh
Confidence 57899999999999999999995 689999999999999999872 22221 1 1224445554443 4557
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 415 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 415 Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
++++.+..+...+..+... . . .....|+.+|+.+++...+
T Consensus 303 ~L~~~i~~~~~~aa~~~~~---~------~---~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 303 SLERQLAAICRKAAKAIVA---E------E---RKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHT---T------C---CSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHh---c------C---CcceecCHHHHHHHhCCcc
Confidence 7776666655544443221 0 0 1112489999999997544
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-19 Score=176.36 Aligned_cols=195 Identities=19% Similarity=0.226 Sum_probs=130.5
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh-hhhccch
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV-SKWRGDS 286 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~-~~~~g~~ 286 (489)
.+.++|.+...+.+......... ........++.++||+||||||||++|+++|++++.+++.+++++.. +...+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~--~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQ--QTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHH--HHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHH--HHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 35677877666655553111100 00000134568999999999999999999999999999999887532 2211223
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH-HHH
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA-AML 365 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~-al~ 365 (489)
...++.+|..+....+++|||||+|.+.+.+.... .....+++.|...+++.......++||+|||.++.+++ .+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~---~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~ 186 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 186 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh---hHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhh
Confidence 35677888888877789999999999976543211 11245667777777766556667889999999988888 678
Q ss_pred hhcccccccCCCCH-HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 011305 366 RRLEKRILVPLPDT-EARRAMFESLLPSQTGEESLPYDLLVERTEGY 411 (489)
Q Consensus 366 rRf~~~i~~~~Pd~-~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~ 411 (489)
+||...+.+|.++. ++...++... .. -.+.++..+++.+.|+
T Consensus 187 ~rf~~~i~~p~l~~r~~i~~i~~~~---~~-~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 187 NAFSTTIHVPNIATGEQLLEALELL---GN-FKDKERTTIAQQVKGK 229 (272)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH---TC-SCHHHHHHHHHHHTTS
T ss_pred cccceEEcCCCccHHHHHHHHHHhc---CC-CCHHHHHHHHHHhcCC
Confidence 89988888877665 4444554432 11 1233456667777665
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=181.87 Aligned_cols=220 Identities=19% Similarity=0.283 Sum_probs=150.0
Q ss_pred cccCcHHHHHHHHHHHHccccCchhh---cccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-hccc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYF---TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~---~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-~~g~ 285 (489)
.|+|++.+++.+...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++++++... |.|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 47999999999998885433222111 1112356899999999999999999999999999999999988743 6665
Q ss_pred h-HHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCCc-----------------
Q 011305 286 S-EKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLT----------------- 342 (489)
Q Consensus 286 ~-~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~LL~~ldg~~----------------- 342 (489)
. ...+..++..+ ....++||||||+|.+...+........ ..+.+++.|+..|++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 4 45566676654 3345689999999999887654332222 23458899999998531
Q ss_pred -cCCCcEEEEEEeCCC----------Cc-----------------------------------ccHHHHhhcccccccCC
Q 011305 343 -QSDELVFVLAATNLP----------WE-----------------------------------LDAAMLRRLEKRILVPL 376 (489)
Q Consensus 343 -~~~~~viVIatTn~p----------~~-----------------------------------Ld~al~rRf~~~i~~~~ 376 (489)
-...++++|+++|.. .. +.+++.+||+..+.+++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 012334555565532 01 68999999999999999
Q ss_pred CCHHHHHHHHHHhcC-----------CCCCC---CCCCHHHHHH--HhcCCcHHHHHHHHHHHHhHHHH
Q 011305 377 PDTEARRAMFESLLP-----------SQTGE---ESLPYDLLVE--RTEGYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 377 Pd~~eR~~IL~~~l~-----------~~~~~---~~~dl~~La~--~t~G~sg~Di~~l~~~A~~~a~r 429 (489)
|+.+++.+|+...+. ..... .+..++.|++ ....+..++|+++++++...++.
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~ 324 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMY 324 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHH
Confidence 999999999987221 11111 1122455554 23455668888888877766544
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=171.50 Aligned_cols=196 Identities=18% Similarity=0.165 Sum_probs=141.5
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
...+.+|++++|.+.+++.+.+.+...... ..++.++||+||||||||++|++++++++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 455668999999999999999887653211 124578999999999999999999999999999999876532
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc---------------cCCC
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT---------------QSDE 346 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~---------------~~~~ 346 (489)
...+...+..+ ...+++|||||+|.+... .+..|+..++... ....
T Consensus 77 -----~~~l~~~l~~~-~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 -----PGDLAAILANS-LEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp -----HHHHHHHHTTT-CCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred -----hHHHHHHHHHh-ccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 12222222221 145689999999988533 2334444444221 0112
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHh
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~ 425 (489)
.+.+|++||.+..+++++.+||...+.++.|+.+++..+++.++...+...+. .++.++..+.| +++++..+++.+..
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~ 216 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRD 216 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTT
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHH
Confidence 47789999999999999999998889999999999999999988765544332 35667777654 55777777766543
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.6e-17 Score=153.03 Aligned_cols=204 Identities=18% Similarity=0.150 Sum_probs=140.9
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~ 275 (489)
...++..|++++|.+..++.+.+.+... ...+++|+||||||||++++++++++ ...++.+++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 3456778999999999999999887541 22459999999999999999999986 466888887
Q ss_pred cchhhhhccchHHHHHHHHHHHH------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELAR------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVF 349 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~vi 349 (489)
++..+. ..+...+.... ...+.+|+|||+|.+... ..+.|+..++. ....+.
T Consensus 77 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~---~~~~~~ 134 (226)
T 2chg_A 77 SDERGI------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCR 134 (226)
T ss_dssp TCTTCH------HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEE
T ss_pred ccccCh------HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHh---cCCCCe
Confidence 654321 12222222221 245789999999988532 23345555543 233467
Q ss_pred EEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 350 VLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 350 VIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
+|++||.+..+++++.+||. .+.++.|+.++...++...+...+...+ ..+..+++.+.| +++.+..+++.++..+
T Consensus 135 ~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~- 211 (226)
T 2chg_A 135 FILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG- 211 (226)
T ss_dssp EEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-
T ss_pred EEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-
Confidence 78899999999999999997 7999999999999999988765444322 234556665544 3444444443332210
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
..|+.+|+++++.
T Consensus 212 ----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 ----------------------EVVDADTIYQITA 224 (226)
T ss_dssp ----------------------SCBCHHHHHHHHH
T ss_pred ----------------------ceecHHHHHHHhc
Confidence 2499999999886
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-17 Score=173.76 Aligned_cols=177 Identities=24% Similarity=0.346 Sum_probs=134.2
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh-hhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS-KWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~-~~~g~ 285 (489)
++|+|++++|+.|...+..+..++..+... ..+++++||+||||||||++|+++|+.++.+++.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 479999999999999988876666555443 235689999999999999999999999999999999998887 58884
Q ss_pred -hHHHHHHHHHHHH------------------------------------------------------------------
Q 011305 286 -SEKLIKVLFELAR------------------------------------------------------------------ 298 (489)
Q Consensus 286 -~~~~l~~lf~~A~------------------------------------------------------------------ 298 (489)
.+..++.+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 6666666554430
Q ss_pred -------------------------------------------------------------------------hcCCcEE
Q 011305 299 -------------------------------------------------------------------------HHAPSTI 305 (489)
Q Consensus 299 -------------------------------------------------------------------------~~~p~VL 305 (489)
....+||
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 0012589
Q ss_pred EEchhhhHHhhhcccchhhHHHH-HHHHHHHHHhcCCcc-------CCCcEEEEEEe----CCCCcccHHHHhhcccccc
Q 011305 306 FLDEIDAIISQRGEARSEHEASR-RLKTELLIQMDGLTQ-------SDELVFVLAAT----NLPWELDAAMLRRLEKRIL 373 (489)
Q Consensus 306 ~IDEiD~l~~~r~~~~~~~~~~~-~i~~~LL~~ldg~~~-------~~~~viVIatT----n~p~~Ld~al~rRf~~~i~ 373 (489)
++||+|.+...... ...+.+. -++..||..+++... ..+++++|||. +.|..+.|++++||+.++.
T Consensus 255 ~~DEidki~~~~~~--~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~ 332 (444)
T 1g41_A 255 FIDEIDKICKKGEY--SGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVE 332 (444)
T ss_dssp EEETGGGGSCCSSC--SSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEE
T ss_pred eHHHHHHHhhccCC--CCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeee
Confidence 99999999865332 1233333 478899999997421 34568888887 3555567899999999999
Q ss_pred cCCCCHHHHHHHHH
Q 011305 374 VPLPDTEARRAMFE 387 (489)
Q Consensus 374 ~~~Pd~~eR~~IL~ 387 (489)
++.++.++..+|+.
T Consensus 333 l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 333 LTALSAADFERILT 346 (444)
T ss_dssp CCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 99999999999994
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=166.33 Aligned_cols=198 Identities=22% Similarity=0.229 Sum_probs=133.2
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 203 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dli-G--~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+..+|++++ | ...+...+...+..+ ...+.+++|+||||||||++|+++++++ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4567899997 4 445555566554432 1234789999999999999999999998 8999999998
Q ss_pred chhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC
Q 011305 277 SVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL 356 (489)
Q Consensus 277 ~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~ 356 (489)
++...+.+.........|.... ..+++|||||++.+..+.. .+..++..++..... +..+|+++++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~~-----------~~~~l~~~l~~~~~~-~~~iii~~~~~ 141 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLL-EKQIILASDRH 141 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCChH-----------HHHHHHHHHHHHHHC-CCeEEEEecCC
Confidence 8766554433222222232222 2368999999999865311 122233333322222 23556666666
Q ss_pred CC---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011305 357 PW---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 357 p~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~ 426 (489)
+. .+++++.+||. ..+.+++ +.+++..|++..+...+...+. .++.++..+ .+.+++..++..+...
T Consensus 142 ~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 142 PQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLK 214 (324)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHc
Confidence 65 58999999996 5688888 9999999999998765554333 356677777 4667777777665544
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-17 Score=172.43 Aligned_cols=222 Identities=16% Similarity=0.243 Sum_probs=147.1
Q ss_pred CCCCCCcccc-Cc--HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEe
Q 011305 203 SPDVKWESIK-GL--ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNIS 274 (489)
Q Consensus 203 ~~~~~~~dli-G~--e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~ 274 (489)
.+..+|++++ |. ..+...+......+ .. +.+++|+||||||||++|+++++++ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 4566899987 54 33444444443321 11 4689999999999999999999988 88999999
Q ss_pred ccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEe
Q 011305 275 ASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAAT 354 (489)
Q Consensus 275 ~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatT 354 (489)
+.++...+.+.........|.......+.||||||++.+.... ..+..++..++..... +..+|+++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-----------~~q~~l~~~l~~l~~~-~~~iIitt~ 235 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-----------GVQTELFHTFNELHDS-GKQIVICSD 235 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-----------HHHHHHHHHHHHHHTT-TCEEEEEES
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHHC-CCeEEEEEC
Confidence 9887655443222211122333333367999999999986431 1223344444332222 234455444
Q ss_pred CCCCc---ccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHH
Q 011305 355 NLPWE---LDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPL 428 (489)
Q Consensus 355 n~p~~---Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~ 428 (489)
+.+.. +++++++||. ..+.++.|+.++|..|++..+...+...+. .++.++..+.| +.+++..+++.+...+.
T Consensus 236 ~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~ 314 (440)
T 2z4s_A 236 REPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKE 314 (440)
T ss_dssp SCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 44554 8899999996 788999999999999999988655544333 36777877764 77888888877665432
Q ss_pred HHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCC
Q 011305 429 RRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRP 467 (489)
Q Consensus 429 rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~p 467 (489)
. . ..+||.+++.++++...+
T Consensus 315 ~------~-------------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 315 T------T-------------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp H------S-------------SSCCCHHHHHHHTSTTTC
T ss_pred H------h-------------CCCCCHHHHHHHHHHHhh
Confidence 1 1 124888889888887764
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=174.51 Aligned_cols=215 Identities=21% Similarity=0.257 Sum_probs=140.3
Q ss_pred cCCCCCCCccccCcHHHH---HHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 201 RGSPDVKWESIKGLENAK---RLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k---~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
....+.+|++++|++.++ +.|...+... ...++||+||||||||++|+++++.++.+++.+++..
T Consensus 18 ~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 18 ARMRPENLAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HHTCCCSTTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HHhCCCCHHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 345667899999999999 6777766541 1268999999999999999999999999999998754
Q ss_pred hhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 278 VVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
. ..+.++.++..+. ...++||||||+|.+... .++.|+..++. .. +++|++
T Consensus 86 ~-------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~----~~-v~lI~a 140 (447)
T 3pvs_A 86 S-------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIED----GT-ITFIGA 140 (447)
T ss_dssp C-------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHT----TS-CEEEEE
T ss_pred C-------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhc----Cc-eEEEec
Confidence 3 2233455555444 345789999999988543 23456777763 23 445555
Q ss_pred e-CCC-CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCC-------CCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 354 T-NLP-WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTG-------EES-LPYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 354 T-n~p-~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~-------~~~-~dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
| .++ ..+++++++||. .+.++.|+.+++..+++..+..... ..+ ..++.++..+.| ..+++.++++.+
T Consensus 141 tt~n~~~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a 218 (447)
T 3pvs_A 141 TTENPSFELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMM 218 (447)
T ss_dssp ESSCGGGSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred CCCCcccccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 4 333 579999999995 6789999999999999998865221 111 124445555443 334444444433
Q ss_pred HhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCChh
Q 011305 424 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPSAH 470 (489)
Q Consensus 424 ~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps~~ 470 (489)
... ..... .....||.+++.+++....+...
T Consensus 219 ~~~---------------a~~~~-~~~~~It~e~v~~~l~~~~~~~d 249 (447)
T 3pvs_A 219 ADM---------------AEVDD-SGKRVLKPELLTEIAGERSARFD 249 (447)
T ss_dssp HHH---------------SCBCT-TSCEECCHHHHHHHHTCCCCC--
T ss_pred HHh---------------ccccc-CCCCccCHHHHHHHHhhhhhccC
Confidence 321 11000 01134999999999987765443
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=169.93 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=118.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+..++.+.+|++++|++.+++.+++++.. ...++.+|++||||||||++|+++|++++.+++++++++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~~-----------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITSK-----------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHHT-----------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 44456778899999999999999988763 1334678889999999999999999999999999998764
Q ss_pred hhhhccchHHHHHHHHHHHHhc-----CCcEEEEchhhhHH-hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEE
Q 011305 279 VSKWRGDSEKLIKVLFELARHH-----APSTIFLDEIDAII-SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLA 352 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~-----~p~VL~IDEiD~l~-~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIa 352 (489)
. ...++..+...... .+.||+|||+|.+. .. .++.|+..++.. ...+.+|+
T Consensus 85 ~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~---~~~~~iI~ 141 (324)
T 3u61_B 85 K-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAY---SSNCSIII 141 (324)
T ss_dssp C-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-------------HHHHHHHHHHHH---GGGCEEEE
T ss_pred C-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-------------HHHHHHHHHHhC---CCCcEEEE
Confidence 2 23344433332222 46899999999985 22 334566666532 23466888
Q ss_pred EeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 353 ATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 353 tTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
+||.+..+++++++||. .+.|+.|+.++|.+|++.++
T Consensus 142 ~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 142 TANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp EESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHH
Confidence 99999999999999995 69999999999877665543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.8e-18 Score=158.55 Aligned_cols=207 Identities=21% Similarity=0.241 Sum_probs=145.2
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
...+.+..|++++|.+..++.+.+.+... ..++.++|+||||||||++++++++.++..
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 34456677999999999999999887541 233579999999999999999999987432
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.++... ......+..++.... ...+.+|+|||+|.+... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-------------~~ 143 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SF 143 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HH
T ss_pred cHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------HH
Confidence 22222211 012233444444332 234689999999987322 34
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
+.|+..++.. ...+.+|++|+.+..+++++.+|+ ..+.++.|+.++..++++.++...+...+ ..++.+++.+.|
T Consensus 144 ~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 219 (250)
T 1njg_A 144 NALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 219 (250)
T ss_dssp HHHHHHHHSC---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC
Confidence 5566666532 345778889999989999999997 67999999999999999988865544322 236678888866
Q ss_pred CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 411 YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 411 ~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+++.+..+++.+...+ ...||.+|+++++.
T Consensus 220 -~~~~~~~~~~~~~~~~----------------------~~~i~~~~v~~~~~ 249 (250)
T 1njg_A 220 -SLRDALSLTDQAIASG----------------------DGQVSTQAVSAMLG 249 (250)
T ss_dssp -CHHHHHHHHHHHHTTT----------------------TSSBCHHHHHHHSC
T ss_pred -CHHHHHHHHHHHHhcc----------------------CceecHHHHHHHhC
Confidence 7778877777653210 01499999998863
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.74 E-value=7.2e-17 Score=153.75 Aligned_cols=207 Identities=14% Similarity=0.109 Sum_probs=138.1
Q ss_pred CCCCCccccCc---HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 204 PDVKWESIKGL---ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 204 ~~~~~~dliG~---e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+..+|++++|. +.+.+.+...+.. ..+.+++|+||||||||++|+++++++ +.+++.+++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 34689999972 4666666665532 234789999999999999999999987 47889999888
Q ss_pred hhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 278 VVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 278 l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
+........ . ....+.+|+|||+|.+..... ....++..++.........+|++++..+
T Consensus 91 ~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~~~~-----------~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 91 HASISTALL--------E--GLEQFDLICIDDVDAVAGHPL-----------WEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGSCGGGG--------T--TGGGSSEEEEETGGGGTTCHH-----------HHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHHH--------H--hccCCCEEEEeccccccCCHH-----------HHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 765432111 1 113468999999998854321 1223333333222222222445444444
Q ss_pred C---cccHHHHhhcc--cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 358 W---ELDAAMLRRLE--KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 358 ~---~Ld~al~rRf~--~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
. .+++++.+||. ..+.++.|+.+++.+++..++...+...+. .++.+++.+.| +.+++..+++.+...+..+
T Consensus 150 ~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~- 227 (242)
T 3bos_A 150 MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH- 227 (242)
T ss_dssp TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh-
Confidence 3 45689999996 789999999999999999988755544333 35667776654 6777777777666544221
Q ss_pred HHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 432 MVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 432 ~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
.+.||.+|++++++
T Consensus 228 ------------------~~~It~~~v~~~l~ 241 (242)
T 3bos_A 228 ------------------QRKLTIPFVKEMLR 241 (242)
T ss_dssp ------------------TCCCCHHHHHHHHT
T ss_pred ------------------CCCCcHHHHHHHhh
Confidence 02499999999885
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=165.31 Aligned_cols=208 Identities=22% Similarity=0.258 Sum_probs=143.5
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 282 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~--- 282 (489)
++++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 478999999999998886642110 0112344689999999999999999999998 6779999998764321
Q ss_pred --ccchH----HH-HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC--------CCc
Q 011305 283 --RGDSE----KL-IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS--------DEL 347 (489)
Q Consensus 283 --~g~~~----~~-l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~--------~~~ 347 (489)
.|... .. ...+........++||||||+|.+.. .+++.|+..++..... -.+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~~~~~~~ 160 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGRTVDFRN 160 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSCEEECTT
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCCEEECCC
Confidence 11000 00 01222333334458999999998843 2556677777643211 135
Q ss_pred EEEEEEeCC--------------------------CCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC-------
Q 011305 348 VFVLAATNL--------------------------PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT------- 394 (489)
Q Consensus 348 viVIatTn~--------------------------p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~------- 394 (489)
+++|+|||. ...+++++++||+..+.+++|+.+++..|++.++....
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~ 240 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKR 240 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778999998 44688899999999999999999999999999885421
Q ss_pred CC---CCCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHH
Q 011305 395 GE---ESLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 395 ~~---~~~dl~~La~~t~--G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
.. .+..++.+++... ..+.++++.+++.+...++.+.+
T Consensus 241 ~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 283 (311)
T 4fcw_A 241 ISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 283 (311)
T ss_dssp CEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHHHH
T ss_pred cEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHHHH
Confidence 11 1223455666554 57789999999998887776644
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.73 E-value=7.5e-18 Score=173.57 Aligned_cols=243 Identities=18% Similarity=0.219 Sum_probs=146.3
Q ss_pred cccCcHHHHHHHHHHHHccccCchh------------------hcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.|+|++.+|+.|...+..+..+... ......++.++||+||||||||++|+++|+.++.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6899999999999887543322211 1112345678999999999999999999999999999
Q ss_pred EEeccchh-hhhccch-HHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHH-HHHHHHHHHHHhcCCc--
Q 011305 272 NISASSVV-SKWRGDS-EKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEA-SRRLKTELLIQMDGLT-- 342 (489)
Q Consensus 272 ~v~~s~l~-~~~~g~~-~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~-~~~i~~~LL~~ldg~~-- 342 (489)
.+++..+. ..+.|.. ...+..++..+. ...++||||||+|.+...+.......+. ...+++.|+..|++..
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99998875 3444432 344555554322 2356899999999998764322111111 1236788888888541
Q ss_pred ----------------cCCCcEEEEEEeCC-----------------------------------------CCcccHHHH
Q 011305 343 ----------------QSDELVFVLAATNL-----------------------------------------PWELDAAML 365 (489)
Q Consensus 343 ----------------~~~~~viVIatTn~-----------------------------------------p~~Ld~al~ 365 (489)
-...++++|+++|. ...+.+++.
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 01134567777762 012568889
Q ss_pred hhcccccccCCCCHHHHHHHHHHhcCC-----------CC--CCC-CCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHH
Q 011305 366 RRLEKRILVPLPDTEARRAMFESLLPS-----------QT--GEE-SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLR 429 (489)
Q Consensus 366 rRf~~~i~~~~Pd~~eR~~IL~~~l~~-----------~~--~~~-~~dl~~La~~t~--G~sg~Di~~l~~~A~~~a~r 429 (489)
+||+..+.|+.++.++...|+...+.. .. ... +..++.|++... ....+.+..++..+...++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 999888999999999999998742211 11 111 112444555532 34567777777776665544
Q ss_pred HHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhh
Q 011305 430 RLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 464 (489)
Q Consensus 430 R~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~ 464 (489)
+.... . .....||.+++..+++.
T Consensus 342 ~~~~~----------~--~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 342 DLPKL----------K--GSEVRITKDCVLKQAEP 364 (376)
T ss_dssp TGGGG----------T--TSEEEECHHHHTTSSCC
T ss_pred hccCC----------C--CCEEEEeHHHhcCCCCc
Confidence 32110 0 01123899998875543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=161.70 Aligned_cols=226 Identities=20% Similarity=0.177 Sum_probs=150.7
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEec
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISA 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~ 275 (489)
....++++|.+..++.+...+...+. ...+.+++|+||||||||++++++++++ +.+++.+++
T Consensus 15 ~~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 15 DYVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp TCCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 33458999999999999987754321 1345789999999999999999999988 888999998
Q ss_pred cchhhhh----------------ccc-hHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 276 SSVVSKW----------------RGD-SEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 276 s~l~~~~----------------~g~-~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
....+.+ .+. .......++..... ..|.||+|||+|.+...+. ....+..++..
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~--------~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG--------GQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTT--------HHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCC--------CChHHHhHhhc
Confidence 7533211 121 22334444444433 3367999999999965420 12344455554
Q ss_pred hcCCccCCCcEEEEEEeCCC---CcccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCC--CCCC-CCCCHHHHHHHhc-
Q 011305 338 MDGLTQSDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPS--QTGE-ESLPYDLLVERTE- 409 (489)
Q Consensus 338 ldg~~~~~~~viVIatTn~p---~~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~--~~~~-~~~dl~~La~~t~- 409 (489)
++.... ...+.+|++||.+ ..+++++.+||.. .+.+++|+.++...|++..+.. .... .+..++.+++.+.
T Consensus 159 ~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~ 237 (387)
T 2v1u_A 159 NQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAR 237 (387)
T ss_dssp GGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHS
T ss_pred hhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH
Confidence 442210 3457788889887 6789999999975 8999999999999999988753 1222 2333566777776
Q ss_pred --CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 410 --GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 410 --G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
| .++.+..+++.++..+..+ + ...|+.+|+..++....
T Consensus 238 ~~G-~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 238 EHG-DARRALDLLRVAGEIAERR------R------------EERVRREHVYSARAEIE 277 (387)
T ss_dssp SSC-CHHHHHHHHHHHHHHHHHT------T------------CSCBCHHHHHHHHHHHH
T ss_pred hcc-CHHHHHHHHHHHHHHHHHc------C------------CCCcCHHHHHHHHHHHh
Confidence 4 4566667777765543221 0 12388888888877653
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.73 E-value=6.3e-18 Score=154.54 Aligned_cols=162 Identities=21% Similarity=0.333 Sum_probs=116.4
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEE
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFF 271 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i 271 (489)
...+..|++++|.++..+.+.+.+.. ..+.+++|+||||||||++|+++++.+ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (195)
T 1jbk_A 15 RAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVL 82 (195)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEE
T ss_pred HHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEE
Confidence 33456799999999999988887643 234789999999999999999999987 78899
Q ss_pred EEeccchh--hhhccchHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 272 NISASSVV--SKWRGDSEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 272 ~v~~s~l~--~~~~g~~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
.+++.++. ..+.+.....+..++.... ...+.||+|||+|.+......... ..+.+.+...++ ...+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-----~~~~~~l~~~~~-----~~~~ 152 (195)
T 1jbk_A 83 ALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-----MDAGNMLKPALA-----RGEL 152 (195)
T ss_dssp EECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-----CCCHHHHHHHHH-----TTSC
T ss_pred EeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccch-----HHHHHHHHHhhc-----cCCe
Confidence 99988775 3344556666777777554 345779999999999755321100 111222333332 1235
Q ss_pred EEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 349 FVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 349 iVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
.+|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 153 HCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 6777888775 68999999997 5999999999998875
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=159.00 Aligned_cols=216 Identities=14% Similarity=0.121 Sum_probs=143.5
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC------CcEE
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK------TTFF 271 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~------~~~i 271 (489)
.+..++++.+|++++|++++++.+...+... ...++||+||||||||++|+++++.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 3455667888999999999999998876431 123599999999999999999999864 4588
Q ss_pred EEeccchhhhhccchHHHHHHHHHHHH----------------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHH
Q 011305 272 NISASSVVSKWRGDSEKLIKVLFELAR----------------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (489)
Q Consensus 272 ~v~~s~l~~~~~g~~~~~l~~lf~~A~----------------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL 335 (489)
.+++++..+. ..++..+.... ...+.||+|||+|.+... ..+.|+
T Consensus 94 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll 154 (353)
T 1sxj_D 94 ELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALR 154 (353)
T ss_dssp EECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHH
T ss_pred EEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHH
Confidence 8887764211 11111111111 123469999999988543 235566
Q ss_pred HHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHH
Q 011305 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGS 414 (489)
Q Consensus 336 ~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~ 414 (489)
..++.. .....+|++||.+..+.+++++||. .+.++.|+.++...+++..+...+...+ ..++.+++.+.|. .+
T Consensus 155 ~~le~~---~~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r 229 (353)
T 1sxj_D 155 RTMETY---SGVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGD-LR 229 (353)
T ss_dssp HHHHHT---TTTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSC-HH
T ss_pred HHHHhc---CCCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCC-HH
Confidence 666533 2235566788999999999999995 7899999999999999988766554433 2356677777753 44
Q ss_pred HHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 415 DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 415 Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
.+..+++.++..+-+ .. ....||.+|+.+++....
T Consensus 230 ~~~~~l~~~~~~~~~---------~~--------~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 230 RGITLLQSASKGAQY---------LG--------DGKNITSTQVEELAGVVP 264 (353)
T ss_dssp HHHHHHHHTHHHHHH---------HC--------SCCCCCHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCC---------Cc--------cCccccHHHHHHHhCCCC
Confidence 444444444332111 00 001388888888776443
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.8e-17 Score=174.16 Aligned_cols=207 Identities=19% Similarity=0.162 Sum_probs=132.9
Q ss_pred hhhhcCCCCCCCccccCcHHHHHHHHHHHHccccC-chhhccc----CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 197 RDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKY-PKYFTGL----LSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 197 ~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~-~~~~~~~----~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..+.+++.+.+|++|+|++.+++.|.+++...... +..+... ..+++++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 34556677889999999999999999988763321 1222221 124579999999999999999999999999999
Q ss_pred EEeccchhhhhccchH-------HHHHHHHHHH-----HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 272 NISASSVVSKWRGDSE-------KLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 272 ~v~~s~l~~~~~g~~~-------~~l~~lf~~A-----~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
.++++++......... ..+..+|..+ ....++||||||+|.+....+. .+..|+..++
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~----------~l~~L~~~l~ 176 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCR 176 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHH
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH----------HHHHHHHHHH
Confidence 9999876543221000 0011222222 1245789999999998754221 2344555554
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~ 418 (489)
. ....+++++++.....+. .+.+|+ ..+.|+.|+.+++.+++...+...+...+ ..+..+++.+.| |++.
T Consensus 177 ~---~~~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G----diR~ 247 (516)
T 1sxj_A 177 K---TSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQ 247 (516)
T ss_dssp H---CSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHH
T ss_pred h---cCCCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----cHHH
Confidence 2 223344444433333444 355555 68999999999999999887765554433 346777777654 4444
Q ss_pred HHHH
Q 011305 419 VSKE 422 (489)
Q Consensus 419 l~~~ 422 (489)
+++.
T Consensus 248 ~i~~ 251 (516)
T 1sxj_A 248 VINL 251 (516)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.3e-16 Score=161.19 Aligned_cols=155 Identities=21% Similarity=0.218 Sum_probs=109.1
Q ss_pred CCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc------hhh
Q 011305 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS------VVS 280 (489)
Q Consensus 207 ~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~------l~~ 280 (489)
.+++++|++.+++.+...+.. +.++||+||||||||++|+++|+.++.+++.+++.. +.+
T Consensus 25 ~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g 90 (331)
T 2r44_A 25 VGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIG 90 (331)
T ss_dssp HTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHE
T ss_pred hccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCC
Confidence 467999999999988876643 258999999999999999999999999999998741 221
Q ss_pred hhccchHHHHHHHHHHHHhcC---CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEE
Q 011305 281 KWRGDSEKLIKVLFELARHHA---PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVF 349 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~---p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~vi 349 (489)
....... ...+ ..... .+||||||+|.+.+. .++.|+..++... ..+..++
T Consensus 91 ~~~~~~~---~~~~--~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g~~~~~~~~~~ 152 (331)
T 2r44_A 91 TMIYNQH---KGNF--EVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGDTTYPLDNPFL 152 (331)
T ss_dssp EEEEETT---TTEE--EEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTEEEECCSSCE
T ss_pred ceeecCC---CCce--EeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCCEEEECCCCEE
Confidence 1110000 0000 00111 279999999987433 3455666555221 1234567
Q ss_pred EEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC
Q 011305 350 VLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 350 VIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
||+|+|..+ .+++++++||...+.++.|+.+++.+|++..+...
T Consensus 153 viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 153 VLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp EEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred EEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccC
Confidence 777887443 38999999998889999999999999999987653
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.8e-17 Score=172.18 Aligned_cols=191 Identities=20% Similarity=0.276 Sum_probs=132.2
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
..++.....+.++++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l 234 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 34455556677899999999999998887643 223689999999999999999999997
Q ss_pred -CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 267 -KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 267 -~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
+.+++.++++ +.+.|..+..++.+|..+....|+||||| .. ....+.|+..++ .
T Consensus 235 ~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~~-----------~~a~~~L~~~L~-----~ 289 (468)
T 3pxg_A 235 RDKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----R 289 (468)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----S
T ss_pred cCCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------Cc-----------hhHHHHHHHhhc-----C
Confidence 7889999887 66778777888999999998888999999 11 112233433332 2
Q ss_pred CcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC----CCC-CCCHHHHHHHhcCCc---
Q 011305 346 ELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GEE-SLPYDLLVERTEGYS--- 412 (489)
Q Consensus 346 ~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~~-~~dl~~La~~t~G~s--- 412 (489)
+.+.+|++||.+. .+++++.+||.. +.++.|+.+++..|++.++.... ... +..+..++..+.+|.
T Consensus 290 g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~ 368 (468)
T 3pxg_A 290 GELQCIGATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (468)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccC
Confidence 3477888998886 589999999974 99999999999999999887633 221 223555666655444
Q ss_pred --HHHHHHHHHHHH
Q 011305 413 --GSDIRLVSKEAA 424 (489)
Q Consensus 413 --g~Di~~l~~~A~ 424 (489)
+.....++.+|.
T Consensus 369 ~lp~~ai~ll~~a~ 382 (468)
T 3pxg_A 369 FLPDKAIDLIDEAG 382 (468)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHH
Confidence 345556666555
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-16 Score=157.03 Aligned_cols=214 Identities=20% Similarity=0.172 Sum_probs=143.1
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----------CCcEEEEecc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----------KTTFFNISAS 276 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----------~~~~i~v~~s 276 (489)
.++++|.+..++.+.+.+..... ...+++++|+||||||||++|+++++++ +.+++.+++.
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 37899999999999988765432 1335689999999999999999999988 8999999987
Q ss_pred chh-hh----------h-------ccc-hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHH-HHHHHH
Q 011305 277 SVV-SK----------W-------RGD-SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRL-KTELLI 336 (489)
Q Consensus 277 ~l~-~~----------~-------~g~-~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i-~~~LL~ 336 (489)
+.. .. . .+. ....+..++.......+ ||+|||+|.+...... .. +..|+.
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~-vlilDEi~~l~~~~~~---------~~~l~~l~~ 160 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRA-IIYLDEVDTLVKRRGG---------DIVLYQLLR 160 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCE-EEEEETTHHHHHSTTS---------HHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCC-EEEEECHHHhccCCCC---------ceeHHHHhc
Confidence 543 11 0 111 13334455554444443 9999999999654211 12 233332
Q ss_pred HhcCCccCCCcEEEEEEeCCC---CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC--CCCCC-CCCHHHHHHHhcC
Q 011305 337 QMDGLTQSDELVFVLAATNLP---WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS--QTGEE-SLPYDLLVERTEG 410 (489)
Q Consensus 337 ~ldg~~~~~~~viVIatTn~p---~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~--~~~~~-~~dl~~La~~t~G 410 (489)
.. ..+.+|++||.+ ..+++++.+||...+.+++|+.++..++++..+.. ..... +..++.+++.+.+
T Consensus 161 ~~-------~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 233 (384)
T 2qby_B 161 SD-------ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAK 233 (384)
T ss_dssp SS-------SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHT
T ss_pred CC-------cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHh
Confidence 11 457888899887 67899999999779999999999999999997752 11122 2235566666652
Q ss_pred --CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 411 --YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 411 --~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
-..+.+..+++.|+..+. ....|+.+|+..++....
T Consensus 234 ~~G~~r~a~~~l~~a~~~a~--------------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 234 EHGDARKAVNLLFRAAQLAS--------------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp TCCCHHHHHHHHHHHHHHTT--------------------SSSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhc--------------------CCCccCHHHHHHHHHHHh
Confidence 223344445554433211 012488899988887764
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=158.38 Aligned_cols=160 Identities=21% Similarity=0.279 Sum_probs=102.3
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-------c------
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-------T------ 269 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-------~------ 269 (489)
.++.+|++++|++.+++.+....... ...++||+||||||||++|+++++.++. +
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 46678999999999887765433221 1246999999999999999999999863 2
Q ss_pred --------------------EEEEeccchhhhhccchHHHHHHHHHHH---------HhcCCcEEEEchhhhHHhhhccc
Q 011305 270 --------------------FFNISASSVVSKWRGDSEKLIKVLFELA---------RHHAPSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 270 --------------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A---------~~~~p~VL~IDEiD~l~~~r~~~ 320 (489)
++.+..........|... +...+..+ ....++||||||+|.+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~---- 159 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---- 159 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----
Confidence 222221111111111100 01111111 1113589999999988543
Q ss_pred chhhHHHHHHHHHHHHHhcCC----cc------CCCcEEEEEEeCCCC-cccHHHHhhcccccccCCC-CHHHHHHHHHH
Q 011305 321 RSEHEASRRLKTELLIQMDGL----TQ------SDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFES 388 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~----~~------~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~ 388 (489)
.++.|+..++.- .. .+..+++|+|||... .+++++++||...+.++.| +.+++.+|++.
T Consensus 160 ---------~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~ 230 (350)
T 1g8p_A 160 ---------IVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 230 (350)
T ss_dssp ---------HHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHH
Confidence 344566655421 11 112588899999744 7999999999888999998 67778788877
Q ss_pred h
Q 011305 389 L 389 (489)
Q Consensus 389 ~ 389 (489)
.
T Consensus 231 ~ 231 (350)
T 1g8p_A 231 R 231 (350)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.3e-16 Score=157.09 Aligned_cols=181 Identities=20% Similarity=0.194 Sum_probs=127.7
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v 273 (489)
+..++.+.+|++++|++.+++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 7 ~~~k~~p~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~ 74 (319)
T 2chq_A 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVER------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEM 74 (319)
T ss_dssp TTTTTSCSSGGGSCSCHHHHHHHHTTTTT------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEE
T ss_pred HHHhcCCCCHHHHhCCHHHHHHHHHHHhC------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEE
Confidence 45567788899999999999998876533 112359999999999999999999987 4568888
Q ss_pred eccchhhhhccchHHHHHHHHHHH-H-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELA-R-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A-~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
++++..+. ......+....... . ...+.||+|||+|.+... ..+.|+..++. ....+.+|
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~i 136 (319)
T 2chq_A 75 NASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEM---YSKSCRFI 136 (319)
T ss_dssp ETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSS---SSSSEEEE
T ss_pred eCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeEE
Confidence 88764321 12222222222110 0 134689999999988532 23456665553 33457788
Q ss_pred EEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 352 AATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 352 atTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
++||.+..+.+++.+||. .+.++.|+.+++..++...+...+...+. .++.++..+.|
T Consensus 137 ~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 137 LSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp EEESCGGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred EEeCChhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 899999999999999995 79999999999999999988766554332 34555654443
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-16 Score=176.03 Aligned_cols=203 Identities=17% Similarity=0.192 Sum_probs=143.1
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGD 285 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~ 285 (489)
++++|++.+++.+.+.+....... .....|..++||+||||||||++|+++|+.+ +.+++.++|+++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~---~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGL---KDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTC---SCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHccc---CCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 568999999999998886532111 0012233479999999999999999999998 7899999999998776654
Q ss_pred hHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCCCcEEEEEEeCCC
Q 011305 286 SEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSDELVFVLAATNLP 357 (489)
Q Consensus 286 ~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~~~viVIatTn~p 357 (489)
...+....+...++||||||+|.+.+ .+++.|++.++.-. ....++++|+|||.+
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~ 630 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP-------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVG 630 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH-------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSS
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH-------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCC
Confidence 12233344455678999999998743 35677777776422 123457889999975
Q ss_pred Cc------------ccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-------CCCCCC---CHHHHHHH--hcCCcH
Q 011305 358 WE------------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGEESL---PYDLLVER--TEGYSG 413 (489)
Q Consensus 358 ~~------------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~~~~---dl~~La~~--t~G~sg 413 (489)
.. +.+++++||+..+.|++|+.+++..|++.++... ...... .++.|++. ...+..
T Consensus 631 ~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 710 (758)
T 3pxi_A 631 ASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGA 710 (758)
T ss_dssp TTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTT
T ss_pred hhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCC
Confidence 43 7899999999999999999999999999877442 111111 23445543 234667
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 011305 414 SDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~ 431 (489)
++++++++++...++.+.
T Consensus 711 R~L~~~i~~~v~~~l~~~ 728 (758)
T 3pxi_A 711 RPLRRAIQKHVEDRLSEE 728 (758)
T ss_dssp TTHHHHHHHHTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 889999988887776654
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=7e-16 Score=154.11 Aligned_cols=194 Identities=20% Similarity=0.170 Sum_probs=132.8
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEE
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFN 272 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~ 272 (489)
.+..++.+.+|++++|++.+++.+...+... ...++||+||||||||++|+++++.+. ..++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 3455677888999999999999999877541 123599999999999999999999863 34788
Q ss_pred EeccchhhhhccchHHHHHHHHHHH--HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEE
Q 011305 273 ISASSVVSKWRGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFV 350 (489)
Q Consensus 273 v~~s~l~~~~~g~~~~~l~~lf~~A--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viV 350 (489)
+++++..+. ......+....... ....+.||+|||+|.+... ..+.|+..++. ....+.+
T Consensus 82 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~---~~~~~~~ 143 (327)
T 1iqp_A 82 LNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEM---FSSNVRF 143 (327)
T ss_dssp EETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHH---TTTTEEE
T ss_pred eeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHh---cCCCCeE
Confidence 887654321 11112222211100 0134689999999988432 34556666653 2334667
Q ss_pred EEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 351 LAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 351 IatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
|++||.+..+.+++.+||. .+.+++|+.++...+++..+...+...+ ..++.++..+.| +.+.+..+++.+
T Consensus 144 i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~ 215 (327)
T 1iqp_A 144 ILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAA 215 (327)
T ss_dssp EEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred EEEeCCccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 8889999999999999996 7899999999999999988766554322 235566666654 444444444433
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.7e-16 Score=174.33 Aligned_cols=227 Identities=23% Similarity=0.271 Sum_probs=156.2
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEE
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNI 273 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v 273 (489)
.+.+|++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+ +.+++.+
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 345799999999999998886643 234789999999999999999999987 6778888
Q ss_pred eccchh--hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 274 SASSVV--SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 274 ~~s~l~--~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
++..+. ..+.|..+..++.++..+....++||||||+|.+.+........ .... ..+..+... ..+.+|
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~----~~~~----~~L~~~l~~-~~~~~I 319 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAA----NLIKPLLSS-GKIRVI 319 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCH----HHHH----HHHSSCSSS-CCCEEE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcch----HHHH----HHHHHHHhC-CCeEEE
Confidence 887776 46788899999999999988778999999999998764331111 1122 222222223 346677
Q ss_pred EEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC----CCCC-CCCHHHHHHHhcC-----CcHHHH
Q 011305 352 AATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----TGEE-SLPYDLLVERTEG-----YSGSDI 416 (489)
Q Consensus 352 atTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~----~~~~-~~dl~~La~~t~G-----~sg~Di 416 (489)
++|+.++ .+|+++.+||. .+.++.|+.+++.+||+.++... .... +..+..++..+.+ +.+..+
T Consensus 320 ~at~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~ 398 (758)
T 1r6b_X 320 GSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKA 398 (758)
T ss_dssp EEECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHH
T ss_pred EEeCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHH
Confidence 7887643 47889999997 69999999999999999876542 2221 2224555555444 445566
Q ss_pred HHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 417 RLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 417 ~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
..++.+|.... + +. +.. .....|+.+|+.+++....
T Consensus 399 i~lld~a~~~~--~----~~------~~~--~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 399 IDVIDEAGARA--R----LM------PVS--KRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHH--H----HS------SSC--CCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHH--h----cc------ccc--ccCCccCHHHHHHHHHHhc
Confidence 66666654321 1 00 000 1123489999999998764
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-16 Score=145.31 Aligned_cols=152 Identities=24% Similarity=0.363 Sum_probs=109.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 274 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~ 274 (489)
+..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++++ +.+++.++
T Consensus 18 ~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (187)
T 2p65_A 18 AGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLD 85 (187)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEEC
T ss_pred ccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEe
Confidence 45789999999988888877633 234689999999999999999999987 78899998
Q ss_pred ccchhh--hhccchHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 275 ASSVVS--KWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 275 ~s~l~~--~~~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
+..+.. .+.+.....+..++..+... .|.+|+|||+|.+.+.+...... ..+.+.+...++. ..+.+|
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~----~~~~~~l~~~~~~-----~~~~ii 156 (187)
T 2p65_A 86 LSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA----LDAGNILKPMLAR-----GELRCI 156 (187)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS----CCTHHHHHHHHHT-----TCSCEE
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc----hHHHHHHHHHHhc-----CCeeEE
Confidence 877653 23455556677777766654 67899999999997543211100 1123334344431 336678
Q ss_pred EEeCCCC-----cccHHHHhhcccccccCCCC
Q 011305 352 AATNLPW-----ELDAAMLRRLEKRILVPLPD 378 (489)
Q Consensus 352 atTn~p~-----~Ld~al~rRf~~~i~~~~Pd 378 (489)
++||.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888765 589999999975 8898885
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.5e-15 Score=151.92 Aligned_cols=225 Identities=19% Similarity=0.187 Sum_probs=146.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeccc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASS 277 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------~~~~i~v~~s~ 277 (489)
+....++++|.+...+.+.+.+..... ...+.+++|+||+|||||++++++++.+ +.+++.+++..
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 344568999999999999887654322 1345789999999999999999999988 88999999764
Q ss_pred hhhh----------------hccc-hHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 278 VVSK----------------WRGD-SEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 278 l~~~----------------~~g~-~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
.... ..+. .......++....... |.||+|||++.+...... ..+..++..++
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~---------~~l~~l~~~~~ 157 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYND---------DILYKLSRINS 157 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCS---------THHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcC---------HHHHHHhhchh
Confidence 3211 0111 2233444555444433 789999999999754211 24455666665
Q ss_pred CCccCCCcEEEEEEeCCC---CcccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCC--CCC-CCCHHHHHHHhc---
Q 011305 340 GLTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQT--GEE-SLPYDLLVERTE--- 409 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p---~~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~--~~~-~~dl~~La~~t~--- 409 (489)
.. ...++.+|++|+.+ ..+++.+.+||. ..+.+++++.++..+++...+.... ... +..++.++..+.
T Consensus 158 ~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 158 EV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp SC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 43 33457788888877 457888999986 4899999999999999998764322 111 122455666555
Q ss_pred CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 410 GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 410 G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
| .++.+..++..++..+... + ...|+.+|+..++....
T Consensus 236 G-~~r~~~~ll~~a~~~a~~~------~------------~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 236 G-DARRALDLLRVSGEIAERM------K------------DTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp C-CHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHHHHhc------C------------CCccCHHHHHHHHHHHh
Confidence 4 4455555666665433211 0 02377777777765543
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=99.66 E-value=7.4e-16 Score=157.13 Aligned_cols=190 Identities=22% Similarity=0.242 Sum_probs=133.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc----------
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---------- 269 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---------- 269 (489)
..++.+.+|++++|++.+++.+...+... ..++.+||+||+|||||++|+++++.++..
T Consensus 7 ~~k~rp~~~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~ 75 (373)
T 1jr3_A 7 ARKWRPQTFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 75 (373)
T ss_dssp HHHTCCCSTTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSS
T ss_pred HHhhCCCchhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc
Confidence 34566778999999999999999887531 234578999999999999999999988542
Q ss_pred --------------EEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHH
Q 011305 270 --------------FFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLK 331 (489)
Q Consensus 270 --------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~ 331 (489)
++.++...- ... ..++.++..+. ...+.||+|||+|.+... ..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~ 136 (373)
T 1jr3_A 76 CDNCREIEQGRFVDLIEIDAASR--TKV----EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SF 136 (373)
T ss_dssp SHHHHHHHTSCCSSCEEEETTCS--CCS----SCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HH
T ss_pred cHHHHHHhccCCCceEEeccccc--CCH----HHHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HH
Confidence 233333210 011 12344444443 234679999999987422 34
Q ss_pred HHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 332 TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 332 ~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
+.|+..++. .+..+++|++|+.+..+.+++++|+ ..+.++.|+.++...+++..+...+...+. .++.++..+.|
T Consensus 137 ~~Ll~~le~---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 137 NALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHHHHHS---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHHHHhc---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 567777763 3345778888888889999999998 679999999999999999888665544332 35667777765
Q ss_pred CcHHHHHHHHHHHH
Q 011305 411 YSGSDIRLVSKEAA 424 (489)
Q Consensus 411 ~sg~Di~~l~~~A~ 424 (489)
+.+++..+++.+.
T Consensus 213 -~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 213 -SLRDALSLTDQAI 225 (373)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHH
Confidence 5666666665543
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.9e-16 Score=174.92 Aligned_cols=206 Identities=19% Similarity=0.230 Sum_probs=144.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-------
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK------- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~------- 281 (489)
++++|++.+++.+...+...... ......|..++||+||||||||++|+++|+.++.+++.++++++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g---~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~ 534 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhc
Confidence 35889999999988877542210 00012344579999999999999999999999999999999887543
Q ss_pred -----hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------CCCcE
Q 011305 282 -----WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------SDELV 348 (489)
Q Consensus 282 -----~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~~~~v 348 (489)
|+|..+. ..+....+...++||||||+|.+.+ .+++.|++.|+.-.- .-.++
T Consensus 535 g~~~g~~g~~~~--~~l~~~~~~~~~~vl~lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 535 GAPPGYVGFDQG--GLLTDAVIKHPHAVLLLDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp CCCSCSHHHHHT--THHHHHHHHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred CCCCCCcCcccc--chHHHHHHhCCCcEEEEeCccccCH-------------HHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 3322111 1233444455569999999998743 367778888873211 11457
Q ss_pred EEEEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC---------C
Q 011305 349 FVLAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ---------T 394 (489)
Q Consensus 349 iVIatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~---------~ 394 (489)
+||+|||.+. .+++++++||+..+.|++|+.+++..|++.++... .
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 8999999754 57899999999889999999999999999987532 1
Q ss_pred CCC-CCCHHHHHHHh--cCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 395 GEE-SLPYDLLVERT--EGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 395 ~~~-~~dl~~La~~t--~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
... +..++.+++.. ..+..+++..+++.+...++.+.+
T Consensus 680 ~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~~~ 720 (758)
T 1r6b_X 680 LEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANEL 720 (758)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHHH
T ss_pred EEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 111 22245566543 355688999999988887766543
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=152.26 Aligned_cols=186 Identities=13% Similarity=0.070 Sum_probs=131.1
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEec
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISA 275 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~ 275 (489)
..+.+..|++++|++.+++.+...+... .. .++||+||||+|||++|+++++.+ +.+++.+++
T Consensus 13 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~-----------~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 80 (323)
T 1sxj_B 13 EKYRPQVLSDIVGNKETIDRLQQIAKDG-----------NM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA 80 (323)
T ss_dssp HHTCCSSGGGCCSCTHHHHHHHHHHHSC-----------CC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT
T ss_pred HhcCCCCHHHHHCCHHHHHHHHHHHHcC-----------CC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC
Confidence 3456778999999999999999887531 22 349999999999999999999986 456888887
Q ss_pred cchhhhhccchHHHHHHHHHHHH-------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 276 SSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 276 s~l~~~~~g~~~~~l~~lf~~A~-------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
++..+ ...++.++.... ...+.||+|||+|.+... ..+.|+..++. ....+
T Consensus 81 ~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~---~~~~~ 138 (323)
T 1sxj_B 81 SDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMEL---YSNST 138 (323)
T ss_dssp TSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHH---TTTTE
T ss_pred ccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhc---cCCCc
Confidence 65321 233444444333 223689999999988532 23445666652 23446
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcCCcHHHHHHHHHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEGYSGSDIRLVSKE 422 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G~sg~Di~~l~~~ 422 (489)
.+|++||.+..+.+++.+|+. .+.++.|+.++..++++..+...+...+ ..++.+++.+.|. .+.+..+++.
T Consensus 139 ~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~ 211 (323)
T 1sxj_B 139 RFAFACNQSNKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQS 211 (323)
T ss_dssp EEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred eEEEEeCChhhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 677788999999999999995 7999999999999999988765444322 2356677777653 3333333333
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=176.27 Aligned_cols=192 Identities=20% Similarity=0.281 Sum_probs=133.0
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
..++.....+..+++++|.+..++.+.+.+.. ....++||+||||||||++|+++|+.+
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l 234 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh
Confidence 34455555667899999999999999887643 234689999999999999999999997
Q ss_pred -CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC
Q 011305 267 -KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD 345 (489)
Q Consensus 267 -~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~ 345 (489)
+.+++.+++ ..+|.|+.+..++.+|..+....|+||||| .. ....+.|+..++ .
T Consensus 235 ~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~~-----------~~~~~~L~~~l~-----~ 289 (758)
T 3pxi_A 235 RDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------AA-----------IDASNILKPSLA-----R 289 (758)
T ss_dssp SSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C-------------------CCCTT-----S
T ss_pred cCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------Cc-----------hhHHHHHHHHHh-----c
Confidence 788888887 556788888899999999998889999999 00 112233443332 2
Q ss_pred CcEEEEEEeCCCC-----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-----CHHHHHHHhc-----C
Q 011305 346 ELVFVLAATNLPW-----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-----PYDLLVERTE-----G 410 (489)
Q Consensus 346 ~~viVIatTn~p~-----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-----dl~~La~~t~-----G 410 (489)
..+.+|++||... .+++++++|| ..+.++.|+.+++..||+.++......... .+..++..+. +
T Consensus 290 ~~v~~I~at~~~~~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~ 368 (758)
T 3pxi_A 290 GELQCIGATTLDEYRKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDR 368 (758)
T ss_dssp SSCEEEEECCTTTTHHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCS
T ss_pred CCEEEEeCCChHHHHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccC
Confidence 3477888888887 6899999999 559999999999999999887764322222 2444544433 4
Q ss_pred CcHHHHHHHHHHHHh
Q 011305 411 YSGSDIRLVSKEAAM 425 (489)
Q Consensus 411 ~sg~Di~~l~~~A~~ 425 (489)
+.+.....++.+|+.
T Consensus 369 ~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 369 FLPDKAIDLIDEAGS 383 (758)
T ss_dssp CTTHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHH
Confidence 555666666666543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.8e-15 Score=150.98 Aligned_cols=225 Identities=14% Similarity=0.071 Sum_probs=148.7
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCc--eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccch
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWK--GILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV 278 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~--~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l 278 (489)
....++++|.+...+.+.+.+...... ..+. +++|+||||||||++++++++.+ +.+++.++|...
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~ 84 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 84 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccC
Confidence 334589999999999999887654321 2234 89999999999999999999998 678899997653
Q ss_pred hhhh----------------ccc-hHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 279 VSKW----------------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 279 ~~~~----------------~g~-~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
.... .+. .......+..... ...|.||+|||+|.+. ...+..|+..++.
T Consensus 85 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 85 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQE 151 (389)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc-------------hHHHHHHHHHHHh
Confidence 3110 011 1222233333222 2447899999999882 2245666666654
Q ss_pred Ccc-CCCcEEEEEEeCCC---CcccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCCCC---CCCCCCHHHHHHHhc---
Q 011305 341 LTQ-SDELVFVLAATNLP---WELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQT---GEESLPYDLLVERTE--- 409 (489)
Q Consensus 341 ~~~-~~~~viVIatTn~p---~~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~~~---~~~~~dl~~La~~t~--- 409 (489)
... ....+.+|++||.+ ..+++.+.+||.. .+.+++++.++..++++..+.... .-.+..++.+++.+.
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQT 231 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSS
T ss_pred CCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcc
Confidence 322 11357788889888 5688999999975 799999999999999998875421 112233566777773
Q ss_pred -----CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhCCC
Q 011305 410 -----GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTRPS 468 (489)
Q Consensus 410 -----G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ps 468 (489)
+-.++.+..+++.|+..+..+ + ...|+.+|+..++......
T Consensus 232 ~~~~~~G~~r~~~~~l~~a~~~a~~~------~------------~~~i~~~~v~~~~~~~~~~ 277 (389)
T 1fnn_A 232 PLDTNRGDARLAIDILYRSAYAAQQN------G------------RKHIAPEDVRKSSKEVLFG 277 (389)
T ss_dssp TTCTTSCCHHHHHHHHHHHHHHHHHT------T------------CSSCCHHHHHHHHHHHSCC
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHHHh------C------------CCCcCHHHHHHHHHHHhhh
Confidence 235566777777766544321 0 0136777777777666544
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-14 Score=145.51 Aligned_cols=220 Identities=17% Similarity=0.169 Sum_probs=146.3
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.......+|++++|.+.+++.+...+...... ..++.+++|+|||||||||+++++|++++.++...++..+.
T Consensus 16 ~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~ 88 (334)
T 1in4_A 16 VQFLRPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLV 88 (334)
T ss_dssp -CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCC
T ss_pred HHHcCCccHHHccCcHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhc
Confidence 34445668999999999998888766442110 12446899999999999999999999999988777665432
Q ss_pred hhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc-------c--------C
Q 011305 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------Q--------S 344 (489)
Q Consensus 280 ~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------~--------~ 344 (489)
. ...+..++.. ...+.|+||||++.+.+. ..+.|+..++... . .
T Consensus 89 ~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~ 147 (334)
T 1in4_A 89 K------QGDMAAILTS--LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRID 147 (334)
T ss_dssp S------HHHHHHHHHH--CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC--------------
T ss_pred C------HHHHHHHHHH--ccCCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCccccccccc
Confidence 1 1222232221 224589999999988542 1222333332211 0 0
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 345 ~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
...+.++++|+.+..+++++++||.....++.|+.+++.+|++......+...+. .+..++..+.| +++++..+++.+
T Consensus 148 l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~ 226 (334)
T 1in4_A 148 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRV 226 (334)
T ss_dssp -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHH
T ss_pred CCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHH
Confidence 1235567789999999999999998889999999999999999887655444332 35667777766 457777777766
Q ss_pred HhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 424 AMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 424 ~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
...+..+ +. ..||.+++.+++....
T Consensus 227 ~~~a~~~------~~------------~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 227 RDMLTVV------KA------------DRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHH------TC------------SSBCHHHHHHHHHHHT
T ss_pred HHHHHHc------CC------------CCcCHHHHHHHHHHhC
Confidence 5443221 10 1377777777777654
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-16 Score=177.83 Aligned_cols=207 Identities=19% Similarity=0.252 Sum_probs=133.2
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---------
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC--------- 266 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el--------- 266 (489)
...+.....+.+|++++|.+...+.+.+.+.. ....+++|+||||||||++|+++|+.+
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l 224 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL 224 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhh
Confidence 33444444567899999999998888876633 234689999999999999999999998
Q ss_pred -CCcEEEEeccchh--hhhccchHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 267 -KTTFFNISASSVV--SKWRGDSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 267 -~~~~i~v~~s~l~--~~~~g~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
+.+++.++++.+. ..+.|+.+..++.++..+... .|+||||||+|.+.+.....+ ...+.+.|...++
T Consensus 225 ~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-----~~~~~~~L~~~l~--- 296 (854)
T 1qvr_A 225 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALA--- 296 (854)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH---
T ss_pred cCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-----hHHHHHHHHHHHh---
Confidence 8899999998886 567888899999999988875 678999999999986543211 1223333444443
Q ss_pred cCCCcEEEEEEeCCCC----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC----CC-CCCCHHHHHHHh-----
Q 011305 343 QSDELVFVLAATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT----GE-ESLPYDLLVERT----- 408 (489)
Q Consensus 343 ~~~~~viVIatTn~p~----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~----~~-~~~dl~~La~~t----- 408 (489)
. ..+.+|++||.++ .+++++.+||.. +.++.|+.+++..||+.++.... .. .+..+..++..+
T Consensus 297 -~-~~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 297 -R-GELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp -T-TCCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred -C-CCeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 1 2355788887664 378999999975 99999999999999987765332 11 122244455544
Q ss_pred cCCcHHHHHHHHHHHHh
Q 011305 409 EGYSGSDIRLVSKEAAM 425 (489)
Q Consensus 409 ~G~sg~Di~~l~~~A~~ 425 (489)
.+|.+.....++.+|+.
T Consensus 374 ~~~lp~kai~lldea~a 390 (854)
T 1qvr_A 374 ERRLPDKAIDLIDEAAA 390 (854)
T ss_dssp SSCTHHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHH
Confidence 34556666666665554
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=160.29 Aligned_cols=155 Identities=21% Similarity=0.224 Sum_probs=100.8
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEecc-----chhhh
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-----SVVSK 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s-----~l~~~ 281 (489)
..++|++++++.+...+.. +.++||+||||||||++|+++|+.++ .+|..+++. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3689999999888765532 36899999999999999999999884 466666553 23222
Q ss_pred hccchHHHHHHHHHHHHhc---CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC-------ccCCCcEEEE
Q 011305 282 WRGDSEKLIKVLFELARHH---APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL-------TQSDELVFVL 351 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~---~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~-------~~~~~~viVI 351 (489)
+.+..... ...+..+... .++||||||++.+.+ .+++.|+..|+.- ....+..++|
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~-------------~~q~~LL~~lee~~v~i~G~~~~~~~~~iI 153 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGP-------------AILNTLLTAINERQFRNGAHVEKIPMRLLV 153 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCCH-------------HHHHHHHHHHHSSEEECSSSEEECCCCEEE
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcH-------------HHHHHHHHHHHHHhccCCCCcCCcchhhhh
Confidence 22111111 1122211111 367999999986532 3566778877522 1112223467
Q ss_pred EEeCCCCc---ccHHHHhhcccccccCCCCH-HHHHHHHHHhcC
Q 011305 352 AATNLPWE---LDAAMLRRLEKRILVPLPDT-EARRAMFESLLP 391 (489)
Q Consensus 352 atTn~p~~---Ld~al~rRf~~~i~~~~Pd~-~eR~~IL~~~l~ 391 (489)
+|||.+.. +.+++++||...+.++.|+. +++..|++....
T Consensus 154 ~ATN~lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 154 AASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp EEESSCCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred hccccCCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 78886432 45799999988899999987 778899987653
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=3.2e-15 Score=146.17 Aligned_cols=159 Identities=21% Similarity=0.199 Sum_probs=96.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccchhhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSVVSKW 282 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l~~~~ 282 (489)
.+|++++|.+...+.+.+.+.... ..+.++||+||||||||++|+++++.+. .+++.++|+.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 468999999999998887776532 2246899999999999999999999874 789999998764321
Q ss_pred c-----cchHHH-------HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------
Q 011305 283 R-----GDSEKL-------IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT-------- 342 (489)
Q Consensus 283 ~-----g~~~~~-------l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~-------- 342 (489)
. |..... ....+..+ .+++|||||+|.+... .+..|+..++...
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~ 136 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGSQ 136 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC--
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCcc
Confidence 1 111000 01122222 3489999999988543 3445666665221
Q ss_pred cCCCcEEEEEEeCCCC-------cccHHHHhhccc-ccccCCCCH--HHHHHHHHHhc
Q 011305 343 QSDELVFVLAATNLPW-------ELDAAMLRRLEK-RILVPLPDT--EARRAMFESLL 390 (489)
Q Consensus 343 ~~~~~viVIatTn~p~-------~Ld~al~rRf~~-~i~~~~Pd~--~eR~~IL~~~l 390 (489)
.....+.+|+|||.+. .+.+++.+||.. .+.+|..+. ++...+++.++
T Consensus 137 ~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 137 PLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred cccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 1123467888888751 367899999953 344444432 34444554444
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=152.75 Aligned_cols=159 Identities=10% Similarity=0.066 Sum_probs=115.7
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEeccchhh
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISASSVVS 280 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~s~l~~ 280 (489)
|.|.++..+.+...+...+. ...+.+++|+||||||||++++++++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 66777777777776655432 2356899999999999999999999998 35688999876543
Q ss_pred h----------h------ccchHHHHHHHHHHH--HhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc
Q 011305 281 K----------W------RGDSEKLIKVLFELA--RHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT 342 (489)
Q Consensus 281 ~----------~------~g~~~~~l~~lf~~A--~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~ 342 (489)
. . .+.....+..+|... ....+.||+|||+|.+. . ..++..|+....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~-----------q~~L~~l~~~~~--- 158 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-S-----------EKILQYFEKWIS--- 158 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-C-----------THHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-c-----------chHHHHHHhccc---
Confidence 2 1 133556777778764 34557899999999996 1 123444444332
Q ss_pred cCCCcEEEEEEeCCCCc----ccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCC
Q 011305 343 QSDELVFVLAATNLPWE----LDAAMLRRLE-KRILVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 343 ~~~~~viVIatTn~p~~----Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.....++||+++|..+. +++++++||. ..+.|++++.++..+|++..+..
T Consensus 159 ~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 159 SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 23456889999988754 5566788996 67999999999999999998855
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=5.4e-15 Score=150.10 Aligned_cols=191 Identities=14% Similarity=0.152 Sum_probs=125.7
Q ss_pred hhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC---------
Q 011305 198 DIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT--------- 268 (489)
Q Consensus 198 ~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~--------- 268 (489)
.+.+++.+.+|++++|++.+++.++..+.. ....++ ++|+||+|+|||++++++++++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 356678888999999999999988876511 012234 999999999999999999996521
Q ss_pred --------------------cEEEEeccchhhhhccchHHHHHHHHHHHH--------------hcCCcEEEEchhhhHH
Q 011305 269 --------------------TFFNISASSVVSKWRGDSEKLIKVLFELAR--------------HHAPSTIFLDEIDAII 314 (489)
Q Consensus 269 --------------------~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~--------------~~~p~VL~IDEiD~l~ 314 (489)
+++.+++++.. ......++..+..+. ...|.||+|||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMG----NNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcC----CcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 12333332211 001112333333322 2256799999999863
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
.. ..+.|+..++.. ...+.+|.+|+.+..+.+++++|| ..+.|+.|+.++...+++..+...+
T Consensus 148 ~~-------------~~~~L~~~le~~---~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~ 210 (354)
T 1sxj_E 148 KD-------------AQAALRRTMEKY---SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNER 210 (354)
T ss_dssp HH-------------HHHHHHHHHHHS---TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred HH-------------HHHHHHHHHHhh---cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcC
Confidence 22 345566666543 234667888999999999999999 7799999999999999999886655
Q ss_pred CCCC--CCHHHHHHHhcCCcHHHHHHHHH
Q 011305 395 GEES--LPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 395 ~~~~--~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
...+ ..++.+++.+.| +.+++..+++
T Consensus 211 ~~~~~~~~l~~i~~~~~G-~~r~a~~~l~ 238 (354)
T 1sxj_E 211 IQLETKDILKRIAQASNG-NLRVSLLMLE 238 (354)
T ss_dssp CEECCSHHHHHHHHHHTT-CHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 5422 346667776655 3344434343
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-15 Score=167.40 Aligned_cols=207 Identities=24% Similarity=0.286 Sum_probs=144.5
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh---
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--- 281 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~--- 281 (489)
+++|+|++.+++.+...+...... ......|..++||+||||||||++|+++++.+ +.+++.++|+++...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 357899999999998887653210 00012334689999999999999999999999 789999999876543
Q ss_pred ---------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc--------C
Q 011305 282 ---------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ--------S 344 (489)
Q Consensus 282 ---------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~--------~ 344 (489)
|+|..+ ...+....+...++||||||+|.+.+ .+++.|++.++.-.- .
T Consensus 634 s~l~g~~~~~~G~~~--~g~l~~~~~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~l~~~~~~~~~g~~vd 698 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHP-------------DVFNILLQILDDGRLTDSHGRTVD 698 (854)
T ss_dssp GGC----------------CHHHHHHHCSSEEEEESSGGGSCH-------------HHHHHHHHHHTTTEECCSSSCCEE
T ss_pred HHHcCCCCCCcCccc--cchHHHHHHhCCCeEEEEecccccCH-------------HHHHHHHHHhccCceECCCCCEec
Confidence 122211 12233344445568999999987743 367788888874321 1
Q ss_pred CCcEEEEEEeCCC--------------------------CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-----
Q 011305 345 DELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ----- 393 (489)
Q Consensus 345 ~~~viVIatTn~p--------------------------~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~----- 393 (489)
-.+++||+|||.. ..+.+++++||+..+.+++|+.++...|++.++...
T Consensus 699 ~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~ 778 (854)
T 1qvr_A 699 FRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA 778 (854)
T ss_dssp CTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2357899999972 235688899999999999999999999999887521
Q ss_pred --C--CCC-CCCHHHHHHHhc--CCcHHHHHHHHHHHHhHHHHHHH
Q 011305 394 --T--GEE-SLPYDLLVERTE--GYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 394 --~--~~~-~~dl~~La~~t~--G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
. ... +..++.|++... .++.++++++++.+...++.+.+
T Consensus 779 ~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~~i 824 (854)
T 1qvr_A 779 EKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKI 824 (854)
T ss_dssp TTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHHH
T ss_pred hCCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 1 111 222555666655 67889999999998888777644
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.6e-15 Score=148.28 Aligned_cols=155 Identities=21% Similarity=0.282 Sum_probs=101.8
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW--- 282 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~--- 282 (489)
++++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.+ +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 468999999988888776532 234789999999999999999999976 6889999998764321
Q ss_pred --ccch----H---HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 011305 283 --RGDS----E---KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (489)
Q Consensus 283 --~g~~----~---~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~ 345 (489)
.|.. . ......|..+. +++|||||+|.+... .+..|+..++... ...
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~~ 135 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSNQTIS 135 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBCCCCB
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCccccc
Confidence 1110 0 01122344443 389999999988543 3455666666432 112
Q ss_pred CcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHH----HHHHHHHhc
Q 011305 346 ELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEA----RRAMFESLL 390 (489)
Q Consensus 346 ~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~e----R~~IL~~~l 390 (489)
..+.||++||.+ ..+++.+.+||. .+.+..|+..+ ...++++++
T Consensus 136 ~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l 190 (304)
T 1ojl_A 136 VDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSLRQRREDIPLLADHFL 190 (304)
T ss_dssp CCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCSGGGGGGHHHHHHHHH
T ss_pred CCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCHHHhHhhHHHHHHHHH
Confidence 347788899876 135678888985 44444555444 444555554
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.6e-13 Score=139.20 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=115.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v 273 (489)
+..++.+.+|++++|++.+++.|...+... .. .+++|+||||||||++|+++|+.+. ..+..+
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g-----------~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVDEG-----------KL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTT-----------CC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHhcC-----------CC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 455667888999999999999998877531 12 2499999999999999999999873 346777
Q ss_pred eccchhhhhccchHHHHHHHHHHHH-h-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELAR-H-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~-~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
++++..+ ...++..+.... . ..+.|++|||+|.+... ..+.|+..++.. ...
T Consensus 83 ~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~---~~~ 140 (340)
T 1sxj_C 83 NASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKN 140 (340)
T ss_dssp CTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTT
T ss_pred cCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcC---CCC
Confidence 7655311 122333332222 1 23579999999988432 345567777633 234
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
+.+|.+||.+..+.+++++||. .+.++.++.++..+++...+....
T Consensus 141 ~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 141 TRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp EEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred eEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 5567788999999999999995 688999999998888888775443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-14 Score=128.42 Aligned_cols=124 Identities=12% Similarity=0.133 Sum_probs=87.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccch
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~ 286 (489)
+++|.+...+.+.+.+.... ....+|||+||||||||++|+++++.. +.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----------~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----------ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----------TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 67899888888888775532 234689999999999999999999987 78999 999887544
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC-------c
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW-------E 359 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~-------~ 359 (489)
......+..+. +++|||||+|.+... .+..|+..+... ...+.+|++||.+- .
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~~-------------~q~~Ll~~l~~~---~~~~~~I~~t~~~~~~~~~~~~ 125 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTRE-------------QQYHLVQLQSQE---HRPFRLIGIGDTSLVELAASNH 125 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCHH-------------HHHHHHHHHHSS---SCSSCEEEEESSCHHHHHHHSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCHH-------------HHHHHHHHHhhc---CCCEEEEEECCcCHHHHHHcCC
Confidence 22334455554 389999999988543 344566666422 22355788888752 3
Q ss_pred ccHHHHhhcc
Q 011305 360 LDAAMLRRLE 369 (489)
Q Consensus 360 Ld~al~rRf~ 369 (489)
+.+.+..|+.
T Consensus 126 ~~~~L~~rl~ 135 (145)
T 3n70_A 126 IIAELYYCFA 135 (145)
T ss_dssp CCHHHHHHHH
T ss_pred CCHHHHHHhc
Confidence 5677777774
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.1e-15 Score=163.32 Aligned_cols=166 Identities=22% Similarity=0.269 Sum_probs=103.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhc-ccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE----eccchhhhhc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFT-GLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI----SASSVVSKWR 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~-~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v----~~s~l~~~~~ 283 (489)
..|+|++.+|+.+...+.... +.... .......++||+||||||||++|+++|+.++..++.. ++.++.+...
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~--~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGV--PKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCC--CEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhCCC--cccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 579999999888754332210 00000 1123334899999999999999999999997766543 2222222111
Q ss_pred cch----HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc----------cCCCcEE
Q 011305 284 GDS----EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT----------QSDELVF 349 (489)
Q Consensus 284 g~~----~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~----------~~~~~vi 349 (489)
... .......+..| ..+||||||+|.+... .++.|+..|+.-. ..+..+.
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 100 00001122233 2389999999988543 3456777776322 1234577
Q ss_pred EEEEeCCCC-------------cccHHHHhhccc-ccccCCCCHHHHHHHHHHhcCCC
Q 011305 350 VLAATNLPW-------------ELDAAMLRRLEK-RILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 350 VIatTn~p~-------------~Ld~al~rRf~~-~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
||+|||.+. .+++++++||+. .+..+.|+.+ ...|.++.+...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~ 493 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVH 493 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHh
Confidence 999999886 799999999974 4556667777 888888776543
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-15 Score=131.12 Aligned_cols=131 Identities=11% Similarity=0.129 Sum_probs=89.0
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHH
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKL 289 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~ 289 (489)
+++|.+..++.+.+.+.... ....+|||+||||||||++|+++++... +++.++|+++...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 68899999998888876532 2346899999999999999999999988 99999998875543
Q ss_pred HHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC-Cc----ccHHH
Q 011305 290 IKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP-WE----LDAAM 364 (489)
Q Consensus 290 l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p-~~----Ld~al 364 (489)
...++..+. +++|||||+|.+... .+..|+..++.. ....+.+|+|||.+ .. +++.+
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~--~~~~~~iI~~tn~~~~~~~~~~~~~L 128 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSRN-------------IQTGITFIIGKA--ERCRVRVIASCSYAAGSDGISCEEKL 128 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCHH-------------HHHHHHHHHHHH--TTTTCEEEEEEEECTTTC--CHHHHH
T ss_pred hhhHHHhCC---CCeEEEeChHHCCHH-------------HHHHHHHHHHhC--CCCCEEEEEecCCCHHHHHhCccHHH
Confidence 344555544 489999999998543 233455555422 13345677777754 33 55666
Q ss_pred Hhhccc-ccccCC
Q 011305 365 LRRLEK-RILVPL 376 (489)
Q Consensus 365 ~rRf~~-~i~~~~ 376 (489)
..|+.. .+.+|+
T Consensus 129 ~~rl~~~~i~lPp 141 (143)
T 3co5_A 129 AGLFSESVVRIPP 141 (143)
T ss_dssp HHHSSSEEEEECC
T ss_pred HHHhcCcEEeCCC
Confidence 777633 344443
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-12 Score=133.32 Aligned_cols=164 Identities=12% Similarity=0.102 Sum_probs=112.8
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------------------
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------------------- 269 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------------------- 269 (489)
-++++.+.+...+.. ...++.+||+||||+|||++|+++|+.+...
T Consensus 6 w~~~~~~~l~~~i~~-----------~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~ 74 (334)
T 1a5t_A 6 WLRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (334)
T ss_dssp GGHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred chHHHHHHHHHHHHc-----------CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCC
Confidence 346667777766543 2345679999999999999999999988532
Q ss_pred -EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC
Q 011305 270 -FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (489)
Q Consensus 270 -~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~ 344 (489)
++.+++.+- ........++.+.+.+.. ..+.|++|||+|.+... ..+.|+..++. .
T Consensus 75 d~~~~~~~~~---~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEe---p 135 (334)
T 1a5t_A 75 DYYTLAPEKG---KNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---P 135 (334)
T ss_dssp TEEEECCCTT---CSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---C
T ss_pred CEEEEecccc---CCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcC---C
Confidence 344443210 001123445666665542 23579999999988432 35678888873 3
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC
Q 011305 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY 411 (489)
Q Consensus 345 ~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~ 411 (489)
+..+++|.+|++++.+.++++||+. .+.|+.|+.++..++++... .. .+..+..++..+.|-
T Consensus 136 ~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~---~~-~~~~~~~l~~~s~G~ 197 (334)
T 1a5t_A 136 PAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV---TM-SQDALLAALRLSAGS 197 (334)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC---CC-CHHHHHHHHHHTTTC
T ss_pred CCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc---CC-CHHHHHHHHHHcCCC
Confidence 4457778889999999999999994 69999999999999998876 11 122345566666653
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=126.88 Aligned_cols=208 Identities=14% Similarity=0.099 Sum_probs=128.5
Q ss_pred CCCccccCcHHHHHHHHHHH-HccccCchhhcccCCCCceEEE--EcCCCCcHHHHHHHHHHHh---------CCcEEEE
Q 011305 206 VKWESIKGLENAKRLLKEAV-VMPIKYPKYFTGLLSPWKGILL--FGPPGTGKTMLAKAVATEC---------KTTFFNI 273 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v-~~~l~~~~~~~~~~~~~~~vLL--~GppGtGKT~lAralA~el---------~~~~i~v 273 (489)
...++++|.+...+.|.+.+ ......+ ...+..++| +||||+|||++++++++.+ +.+++++
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~~------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSGA------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTSS------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcCC------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 34478999999999988877 5432210 023468999 9999999999999999877 4567888
Q ss_pred eccchhh------hh----------ccc-hHHHHHHHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHH
Q 011305 274 SASSVVS------KW----------RGD-SEKLIKVLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (489)
Q Consensus 274 ~~s~l~~------~~----------~g~-~~~~l~~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL 335 (489)
++..... .. .+. .......+..... ...|.||+|||+|.+...... ....+..++
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~l~ 165 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYTLL 165 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHHHH
Confidence 8643211 00 011 1122223332222 245789999999998642110 012334444
Q ss_pred HHhcCCccCC--CcEEEEEEeCCCC---ccc---HHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCC---CCCCHHHH
Q 011305 336 IQMDGLTQSD--ELVFVLAATNLPW---ELD---AAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDLL 404 (489)
Q Consensus 336 ~~ldg~~~~~--~~viVIatTn~p~---~Ld---~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~---~~~dl~~L 404 (489)
..++...... .++.+|++|+.++ .++ +.+.+++...+.+++++.++..+++...+...... .+..+..+
T Consensus 166 ~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i 245 (412)
T 1w5s_A 166 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 245 (412)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 4444332113 5677888887665 344 66777886669999999999999998765422211 12235567
Q ss_pred HHHhc------CCcHHHHHHHHHHHHhHH
Q 011305 405 VERTE------GYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 405 a~~t~------G~sg~Di~~l~~~A~~~a 427 (489)
++.+. | .++.+..++..++..+
T Consensus 246 ~~~~~~~~~~~G-~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 246 SDVYGEDKGGDG-SARRAIVALKMACEMA 273 (412)
T ss_dssp HHHHCGGGTSCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCC-cHHHHHHHHHHHHHHH
Confidence 77777 5 5567777777665443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.5e-12 Score=140.61 Aligned_cols=53 Identities=34% Similarity=0.491 Sum_probs=45.0
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
...++..|++++|++.+++.+...+.. +.+++|+||||||||++|++++..+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 345677899999999999888876642 36899999999999999999999884
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.33 E-value=9.8e-12 Score=124.78 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=104.4
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeccchhhhhccch
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSVVSKWRGDS 286 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------~~~~i~v~~s~l~~~~~g~~ 286 (489)
|++++.+.|+..+... . .+++||+||||+|||++|+++|+.+ ...++.+++++- ...
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~-----~~~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE-----NIG 63 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS-----CBC
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC-----CCC
Confidence 6677888888776541 1 3689999999999999999999874 346777776421 122
Q ss_pred HHHHHHHHHHHHhc----CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH
Q 011305 287 EKLIKVLFELARHH----APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA 362 (489)
Q Consensus 287 ~~~l~~lf~~A~~~----~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~ 362 (489)
-..++.+.+.+... ...|++|||+|.+... ..+.|+..++. .+..+++|.+|+.++.+.+
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~ 127 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALEE---PPEYAVIVLNTRRWHYLLP 127 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHHS---CCTTEEEEEEESCGGGSCH
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHhC---CCCCeEEEEEECChHhChH
Confidence 33466677666532 2369999999998432 45778888873 3345667778888999999
Q ss_pred HHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 363 AMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 363 al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
+++|| .+.|+.|+.++...+++..+
T Consensus 128 tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 128 TIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp HHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred HHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 99999 79999999999999988876
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-12 Score=151.01 Aligned_cols=152 Identities=18% Similarity=0.206 Sum_probs=108.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccC----------chhhcc-------------------cCCCCceEEEEcCCCCc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKY----------PKYFTG-------------------LLSPWKGILLFGPPGTG 254 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~----------~~~~~~-------------------~~~~~~~vLL~GppGtG 254 (489)
+.++|+++.|++++|+.+.+.+.+++.+ ++.+.. ..+.++.+|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4578999999999999999999998844 444543 12233459999999999
Q ss_pred HHHHHHHHHHHh---CCcEEEEeccchh------------hhhccc----hHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 255 KTMLAKAVATEC---KTTFFNISASSVV------------SKWRGD----SEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 255 KT~lAralA~el---~~~~i~v~~s~l~------------~~~~g~----~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
||++|++++.+. +.|.+.|+..+.. .+|+++ +++.++.++..|+...|++||+|++|+|.+
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999877 5677777766543 556666 899999999999999999999999999999
Q ss_pred hhc---ccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 316 QRG---EAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 316 ~r~---~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.+. ... .+.....+++++++..|++...... |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~-v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT-CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC-eEEE-Eeccc
Confidence 843 111 1124566788999999998755444 5555 67765
|
| >3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.7e-11 Score=99.15 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHH
Q 011305 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457 (489)
Q Consensus 378 d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eD 457 (489)
|.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++++. ...|+.+|
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~------------------~~~i~~~d 63 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR------------------RKVATEKD 63 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc------------------cccCCHHH
Confidence 567899999999999998889999999999999999999999999999998861 12499999
Q ss_pred HHHHHhhhCCChhh--hHHHHHHHH
Q 011305 458 VEIALKNTRPSAHL--HAHRYEKFN 480 (489)
Q Consensus 458 f~~AL~~~~ps~~~--~~~~y~~~~ 480 (489)
|..|++++.++... ....|.+|+
T Consensus 64 f~~Al~~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 64 FLKAVDKVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHhcCcccccchhHHhccC
Confidence 99999999999764 368888885
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.8e-11 Score=122.94 Aligned_cols=216 Identities=20% Similarity=0.230 Sum_probs=131.9
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc-
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR- 283 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~- 283 (489)
++.++|.....+.+.+.+... .....+|+|+|++||||+++|++++... +.||+.++|+.+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~----------a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKI----------SCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHH----------TTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHh----------cCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 457888887777777766542 1234679999999999999999999877 47999999987643211
Q ss_pred ----cchH-------HHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------ccC
Q 011305 284 ----GDSE-------KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQS 344 (489)
Q Consensus 284 ----g~~~-------~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~--------~~~ 344 (489)
|... ......|..|.. ++||||||+.+... ++..|+..++.- ...
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~~~~ 269 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEI 269 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCC---cEEEEcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCCcee
Confidence 1000 001224444443 89999999998644 445566665421 111
Q ss_pred CCcEEEEEEeCCC-------CcccHHHHhhcccccccCCCCHHHH----HHHHHHhcCCCCCCCCCCHHHHHHHhcCCcH
Q 011305 345 DELVFVLAATNLP-------WELDAAMLRRLEKRILVPLPDTEAR----RAMFESLLPSQTGEESLPYDLLVERTEGYSG 413 (489)
Q Consensus 345 ~~~viVIatTn~p-------~~Ld~al~rRf~~~i~~~~Pd~~eR----~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg 413 (489)
...+.||+|||.. ..+.+.+..|+. .+.+..|+..+| ..++.+++...... ......+++.
T Consensus 270 ~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~-~~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~ 341 (387)
T 1ny5_A 270 EVNVRILAATNRNIKELVKEGKFREDLYYRLG-VIEIEIPPLRERKEDIIPLANHFLKKFSRK-------YAKEVEGFTK 341 (387)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHT-TEEEECCCGGGCHHHHHHHHHHHHHHHHHH-------TTCCCCEECH
T ss_pred eccEEEEEeCCCCHHHHHHcCCccHHHHHhhc-CCeecCCcchhccccHHHHHHHHHHHHHHH-------cCCCCCCCCH
Confidence 2246788999874 224556666763 344555655554 34444444321100 0001234677
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 414 SDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 414 ~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
..+..+.+..|.+++|.+.+.++..-...+. ..|+.+|+...++
T Consensus 342 ~a~~~l~~~~wpGNvreL~~~i~~~~~~~~~------~~i~~~~l~~~~~ 385 (387)
T 1ny5_A 342 SAQELLLSYPWYGNVRELKNVIERAVLFSEG------KFIDRGELSCLVN 385 (387)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHHHHCCS------SEECHHHHHHHC-
T ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC------CcCcHHHCcHhhh
Confidence 7777788888888888877777655443322 2488898876543
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.4e-11 Score=109.81 Aligned_cols=101 Identities=15% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCCCCCccccC----cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEE
Q 011305 202 GSPDVKWESIKG----LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNI 273 (489)
Q Consensus 202 ~~~~~~~~dliG----~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v 273 (489)
...+.+|+++++ +..+.+.+++++.... ..++.+++|+||+|||||++++++++.+ |..++.+
T Consensus 3 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 3 RYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp SCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred hhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 345678999886 3444455554443321 1235789999999999999999999987 6677788
Q ss_pred eccchhhhhccchHHH-HHHHHHHHHhcCCcEEEEchhhhH
Q 011305 274 SASSVVSKWRGDSEKL-IKVLFELARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~-l~~lf~~A~~~~p~VL~IDEiD~l 313 (489)
+..++........... ...+... ...|.+|+|||++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 74 DTKDLIFRLKHLMDEGKDTKFLKT--VLNSPVLVLDDLGSE 112 (180)
T ss_dssp EHHHHHHHHHHHHHHTCCSHHHHH--HHTCSEEEEETCSSS
T ss_pred EHHHHHHHHHHHhcCchHHHHHHH--hcCCCEEEEeCCCCC
Confidence 8777654432111000 0011221 235789999999753
|
| >3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B* | Back alignment and structure |
|---|
Probab=99.12 E-value=5.4e-11 Score=96.09 Aligned_cols=81 Identities=22% Similarity=0.297 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHH
Q 011305 378 DTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPED 457 (489)
Q Consensus 378 d~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eD 457 (489)
|.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++++. ..+|+++|
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~~~d 63 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------------------RYIVLAKD 63 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC------------------CSSBCHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHH
Confidence 678999999999999888888999999999999999999999999999877641 13599999
Q ss_pred HHHHHhhhCCChhhhHHHH
Q 011305 458 VEIALKNTRPSAHLHAHRY 476 (489)
Q Consensus 458 f~~AL~~~~ps~~~~~~~y 476 (489)
|..|+++++||.+.+++.|
T Consensus 64 f~~Al~~~~ps~~~~l~~y 82 (83)
T 3aji_B 64 FEKAYKTVIKKDEQEHEFY 82 (83)
T ss_dssp HHHHHHHHCC---------
T ss_pred HHHHHHHHccCchHHHHhc
Confidence 9999999999988556655
|
| >2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.11 E-value=7.7e-11 Score=96.06 Aligned_cols=78 Identities=23% Similarity=0.265 Sum_probs=70.3
Q ss_pred ccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCC
Q 011305 373 LVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGP 452 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~ 452 (489)
.-.+||.++|.+||+.++++.+...++|++.||+.|.||||+||.++|++|++.++++. ..+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~------------------~~~ 68 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVH 68 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT------------------CSE
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc------------------CCC
Confidence 45689999999999999999988889999999999999999999999999999998862 135
Q ss_pred CCHHHHHHHHhhhCCC
Q 011305 453 IRPEDVEIALKNTRPS 468 (489)
Q Consensus 453 It~eDf~~AL~~~~ps 468 (489)
|+.+||..|+++++|.
T Consensus 69 I~~~df~~Al~~v~p~ 84 (86)
T 2krk_A 69 VTQEDFEMAVAKVMQK 84 (86)
T ss_dssp ECHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHccC
Confidence 9999999999999875
|
| >3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.3e-10 Score=92.75 Aligned_cols=75 Identities=25% Similarity=0.322 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCC
Q 011305 375 PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIR 454 (489)
Q Consensus 375 ~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It 454 (489)
|+|+.++|.+||+.++++.+...++|++.||+.|+||||+||..+|++|++.++++. ..+|+
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~------------------~~~i~ 62 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER------------------RVHVT 62 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT------------------CSEEC
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC------------------CCCCC
Confidence 789999999999999999988889999999999999999999999999999988751 13499
Q ss_pred HHHHHHHHhhhCC
Q 011305 455 PEDVEIALKNTRP 467 (489)
Q Consensus 455 ~eDf~~AL~~~~p 467 (489)
.+||..|++++..
T Consensus 63 ~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 63 QEDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998754
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=99.08 E-value=3.8e-10 Score=139.49 Aligned_cols=140 Identities=19% Similarity=0.300 Sum_probs=92.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH-HhCCcEEEEeccchhhhhccchHHHHHHHHHHHH---------------hcCCcE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT-ECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR---------------HHAPST 304 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~-el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~---------------~~~p~V 304 (489)
.++++||+||||||||++|+.+.. ..+.+++.++++...+ ...+...+.... ..+++|
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~V 1339 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLV 1339 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEE
Confidence 357999999999999999955544 4477888888776532 233344443321 122469
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCC-------CcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSD-------ELVFVLAATNLPW-----ELDAAMLRRLEKRI 372 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~-------~~viVIatTn~p~-----~Ld~al~rRf~~~i 372 (489)
|||||+|....++.... ..-+++.+++ ...+..... .++.+|+|+|.|. .++++++||| ..+
T Consensus 1340 lFiDEinmp~~d~yg~q----~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi 1413 (2695)
T 4akg_A 1340 LFCDEINLPKLDKYGSQ----NVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AIL 1413 (2695)
T ss_dssp EEEETTTCSCCCSSSCC----HHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEE
T ss_pred EEecccccccccccCch----hHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEE
Confidence 99999987443322111 1122333333 222322111 2488999999994 6999999999 779
Q ss_pred ccCCCCHHHHHHHHHHhcCC
Q 011305 373 LVPLPDTEARRAMFESLLPS 392 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l~~ 392 (489)
.++.|+.+++..|+..++..
T Consensus 1414 ~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1414 YLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp ECCCCTTTHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 99999999999999887743
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.03 E-value=4.9e-10 Score=100.54 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=69.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r 317 (489)
++..++|+||+|+|||+++++++..+ |...+++++.++... +...+|.+|+|||++.+....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~~~ 99 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGNEE 99 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCSHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccChHH
Confidence 34689999999999999999999988 777888888776543 112357899999998754321
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC-CCCccc--HHHHhhcccccccCC
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN-LPWELD--AAMLRRLEKRILVPL 376 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn-~p~~Ld--~al~rRf~~~i~~~~ 376 (489)
. ..++..++.....+..++|| ||+ .|..+. +++.+|+..-..+..
T Consensus 100 ----------~---~~l~~li~~~~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 100 ----------Q---ALLFSIFNRFRNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp ----------H---HHHHHHHHHHHHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred ----------H---HHHHHHHHHHHHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 1 22333332222222222444 555 454332 899999976655543
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=99.00 E-value=2.7e-09 Score=109.65 Aligned_cols=198 Identities=20% Similarity=0.226 Sum_probs=122.3
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc--EEEEeccchhhhhc---
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT--FFNISASSVVSKWR--- 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~--~i~v~~s~l~~~~~--- 283 (489)
.+++|.......+.+.+.... .....+|++|++||||+++|++++...+.. |+.++|+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a----------~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIA----------KSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHH----------TSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhhh----------ccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 568898888777776664422 223579999999999999999999987543 99999987643211
Q ss_pred --cch-------HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--c------CCC
Q 011305 284 --GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--Q------SDE 346 (489)
Q Consensus 284 --g~~-------~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--~------~~~ 346 (489)
|.. .......|+.|.. ++||||||+.+... ++..|+..++.-. . ..-
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~---gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~g~~~~~~~ 262 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQ---GTLFLDEVGELDQR-------------VQAKLLRVLETGSFTRLGGNQKIEV 262 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTT---SEEEEETGGGSCHH-------------HHHHHHHHHHHSEECCBTCCCBEEC
T ss_pred hcCccccccCCcccccCChHhhcCC---CeEEecChhhCCHH-------------HHHHHHHHHHhCCcccCCCCcceee
Confidence 000 0001123444443 79999999998644 4556666665221 0 112
Q ss_pred cEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHH----HHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011305 347 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTE----ARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415 (489)
Q Consensus 347 ~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~----eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~D 415 (489)
.+.+|++||..- .+.+.+..|+.. +.+..|... +...++.+++...... ..+...+++...
T Consensus 263 ~~rii~at~~~l~~~v~~g~fr~dL~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~-------~~~~~~~~~~~a 334 (368)
T 3dzd_A 263 DIRVISATNKNLEEEIKKGNFREDLYYRLSV-FQIYLPPLRERGKDVILLAEYFLKKFAKE-------YKKNCFELSEET 334 (368)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTS-EEEECCCGGGSTTHHHHHHHHHHHHHHHH-------TTCCCCCBCHHH
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHHHhCC-eEEeCCChhhchhhHHHHHHHHHHHHHHH-------cCCCCCCcCHHH
Confidence 356788888641 244567777743 444444443 4445555554321100 001124577888
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhc
Q 011305 416 IRLVSKEAAMQPLRRLMVLLEGRQE 440 (489)
Q Consensus 416 i~~l~~~A~~~a~rR~~~~le~~~~ 440 (489)
+..|....|.+++|.+.+.++..-.
T Consensus 335 ~~~L~~~~wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 335 KEYLMKQEWKGNVRELKNLIERAVI 359 (368)
T ss_dssp HHHHHTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 8888888888888888887776544
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-08 Score=102.02 Aligned_cols=187 Identities=15% Similarity=0.116 Sum_probs=111.7
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh----
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---- 279 (489)
+....+.++|.+...+.|.+ +.. ..++|+||+|+|||++++.++++.+.+++++++....
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNY 71 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSC
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccC
Confidence 44456789999988888887 521 4799999999999999999999988778888875420
Q ss_pred -h--hhc------------------------------c---c------hHHHHHHHHHHHHhc--CCcEEEEchhhhHHh
Q 011305 280 -S--KWR------------------------------G---D------SEKLIKVLFELARHH--APSTIFLDEIDAIIS 315 (489)
Q Consensus 280 -~--~~~------------------------------g---~------~~~~l~~lf~~A~~~--~p~VL~IDEiD~l~~ 315 (489)
+ ... + . ....+..++...... .|.+|+|||++.+..
T Consensus 72 ~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~ 151 (357)
T 2fna_A 72 ISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVK 151 (357)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhc
Confidence 0 000 0 0 001233344333332 378999999999864
Q ss_pred hhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH---------HHHhhcccccccCCCCHHHHHHHH
Q 011305 316 QRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA---------AMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 316 ~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~---------al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
..... . ...+..+... ..++.+|.++.....+.. .+..|+...+.+++.+.++..+++
T Consensus 152 ~~~~~-~-----~~~l~~~~~~-------~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l 218 (357)
T 2fna_A 152 LRGVN-L-----LPALAYAYDN-------LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFL 218 (357)
T ss_dssp CTTCC-C-----HHHHHHHHHH-------CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHH
T ss_pred cCchh-H-----HHHHHHHHHc-------CCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHH
Confidence 21110 0 1122222221 123555666654321211 123355567889999999999999
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHH
Q 011305 387 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSK 421 (489)
Q Consensus 387 ~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~ 421 (489)
...+...+...+ +...+...+.|+.. -+..++.
T Consensus 219 ~~~~~~~~~~~~-~~~~i~~~t~G~P~-~l~~~~~ 251 (357)
T 2fna_A 219 RRGFQEADIDFK-DYEVVYEKIGGIPG-WLTYFGF 251 (357)
T ss_dssp HHHHHHHTCCCC-CHHHHHHHHCSCHH-HHHHHHH
T ss_pred HHHHHHcCCCCC-cHHHHHHHhCCCHH-HHHHHHH
Confidence 887643333322 23777888887643 4544443
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=98.87 E-value=3.9e-08 Score=98.29 Aligned_cols=190 Identities=16% Similarity=0.141 Sum_probs=111.0
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh----
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV---- 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~---- 279 (489)
+...-+.++|.+...+.|.+.+.. ++.++|+||+|+|||++++.++++.+ .+++++....
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 444557899999999999887643 15899999999999999999999886 6677664321
Q ss_pred --------h---hhc-------------------------cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchh
Q 011305 280 --------S---KWR-------------------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSE 323 (489)
Q Consensus 280 --------~---~~~-------------------------g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~ 323 (489)
. ... ......+..+...+....|.+|+|||++.+...... .
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~---~ 147 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR---G 147 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT---T
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc---c
Confidence 0 000 011222222323333234899999999998641000 0
Q ss_pred hHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccH---------HHHhhcccccccCCCCHHHHHHHHHHhcCCCC
Q 011305 324 HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDA---------AMLRRLEKRILVPLPDTEARRAMFESLLPSQT 394 (489)
Q Consensus 324 ~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~---------al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~ 394 (489)
. ..+...|-..++.. .++.+|.++.....+.. .+..|+...+.+++.+.++-.+++...+...+
T Consensus 148 ~---~~~~~~L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~ 220 (350)
T 2qen_A 148 G---KELLALFAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVN 220 (350)
T ss_dssp T---HHHHHHHHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred h---hhHHHHHHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 0 11222222222211 23555555543211111 12335556788999999999999988765443
Q ss_pred CCCC-CCHHHHHHHhcCCcHHHHHHHH
Q 011305 395 GEES-LPYDLLVERTEGYSGSDIRLVS 420 (489)
Q Consensus 395 ~~~~-~dl~~La~~t~G~sg~Di~~l~ 420 (489)
...+ ..+..+...+.|+. .-+..++
T Consensus 221 ~~~~~~~~~~i~~~tgG~P-~~l~~~~ 246 (350)
T 2qen_A 221 LDVPENEIEEAVELLDGIP-GWLVVFG 246 (350)
T ss_dssp CCCCHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCCH-HHHHHHH
Confidence 3322 24566777787754 3454444
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-09 Score=99.88 Aligned_cols=101 Identities=18% Similarity=0.245 Sum_probs=62.2
Q ss_pred CCCCCccccCcHH----HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 204 PDVKWESIKGLEN----AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 204 ~~~~~~dliG~e~----~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
...+|+++++... +.+.+.+++... +. ...+.+++|+||||||||++|+++++++ +.+++.+++.
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 91 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEY---EP-----GKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVP 91 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHC---CS-----SCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHh---hh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhH
Confidence 3567999987553 333333333221 10 1123789999999999999999999988 6788889988
Q ss_pred chhhhhccchH-HHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 277 SVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 277 ~l~~~~~g~~~-~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
++......... ..+..++..... +.+|+|||++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~lilDei~~~~ 128 (202)
T 2w58_A 92 ELFRELKHSLQDQTMNEKLDYIKK--VPVLMLDDLGAEA 128 (202)
T ss_dssp HHHHHHHHC---CCCHHHHHHHHH--SSEEEEEEECCC-
T ss_pred HHHHHHHHHhccchHHHHHHHhcC--CCEEEEcCCCCCc
Confidence 76544322110 001222332222 3699999997654
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=111.19 Aligned_cols=145 Identities=19% Similarity=0.162 Sum_probs=84.0
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHH-HHHhCCcEEEEec--c---chhhhhcc
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV-ATECKTTFFNISA--S---SVVSKWRG 284 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAral-A~el~~~~i~v~~--s---~l~~~~~g 284 (489)
|+|++.+|+.|.-.+.-.... ....-++||.|+||| ||++|+++ ++.+....+ +.. + .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCceEEEEc
Confidence 999999988887555332110 111238999999999 99999999 766544333 221 1 11111000
Q ss_pred ch-HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc------cCCCcEEEEEEeCCC
Q 011305 285 DS-EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT------QSDELVFVLAATNLP 357 (489)
Q Consensus 285 ~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~------~~~~~viVIatTn~p 357 (489)
.+ ...-...+..|.. +|+||||++.+.++ .+..|++.|+.-. .-+..+.||||+|..
T Consensus 286 ~tG~~~~~G~l~LAdg---Gvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 286 DRGWALRAGAAVLADG---GILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVDGIALNARCAVLAAINPG 349 (506)
T ss_dssp SSSEEEEECHHHHTTT---SEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEETTEEEECCCEEEEEECCC
T ss_pred CCCcccCCCeeEEcCC---CeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcc
Confidence 00 0000112333333 89999999987543 4556666665211 334567899999976
Q ss_pred C-----------cccHHHHhhcccc-cccCCCCHH
Q 011305 358 W-----------ELDAAMLRRLEKR-ILVPLPDTE 380 (489)
Q Consensus 358 ~-----------~Ld~al~rRf~~~-i~~~~Pd~~ 380 (489)
. .|++++++||+.. +....|+.+
T Consensus 350 ~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 350 EQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp C--CCSCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred cccCCCCCccccCCChHHhhheeeEEEecCCCChh
Confidence 4 6899999999654 344555543
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.76 E-value=5.8e-09 Score=98.16 Aligned_cols=128 Identities=14% Similarity=0.132 Sum_probs=80.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------C-CcEEEEeccchhhhhc----------cc-----hHHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------K-TTFFNISASSVVSKWR----------GD-----SEKLIKVLFELAR 298 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~-~~~i~v~~s~l~~~~~----------g~-----~~~~l~~lf~~A~ 298 (489)
...|++|+||||||++|...+... | .+++..+..++..... .. ....+...+..+
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~- 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP- 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc-
Confidence 468999999999999998875442 4 7777777665543221 11 011222221112
Q ss_pred hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCC
Q 011305 299 HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPD 378 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd 378 (489)
...++||+|||++.+.+.+...... ..++..+.. .+...+-||.+|+.+..++.++++|+...++++.|.
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~--------~rll~~l~~--~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKI--------PENVQWLNT--HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCC--------CHHHHGGGG--TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECS
T ss_pred ccCceEEEEEChhhhccCccccchh--------HHHHHHHHh--cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcc
Confidence 2346899999999997654221111 124444442 233345567788889999999999999999988765
Q ss_pred HHH
Q 011305 379 TEA 381 (489)
Q Consensus 379 ~~e 381 (489)
...
T Consensus 155 ~~~ 157 (199)
T 2r2a_A 155 MGM 157 (199)
T ss_dssp SCC
T ss_pred cCc
Confidence 433
|
| >2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-09 Score=84.39 Aligned_cols=79 Identities=22% Similarity=0.272 Sum_probs=49.9
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHH
Q 011305 380 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVE 459 (489)
Q Consensus 380 ~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~ 459 (489)
++|.+||+.++++.+...++|++.||+.|.||||+||.++|++|++.++++. ...|+.+||.
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~------------------~~~i~~~df~ 62 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN------------------RYVILQSDLE 62 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT------------------CSEECHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc------------------cCCcCHHHHH
Confidence 4689999999998888788999999999999999999999999999988751 1249999999
Q ss_pred HHHhhhC-CChhh-hHHHH
Q 011305 460 IALKNTR-PSAHL-HAHRY 476 (489)
Q Consensus 460 ~AL~~~~-ps~~~-~~~~y 476 (489)
.|++++. |+.+. ++..|
T Consensus 63 ~Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 63 EAYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHHTTCC-----------
T ss_pred HHHHHHHcCcCChHHHHhh
Confidence 9999995 55543 44444
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-08 Score=102.71 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=67.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec--cchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA--SSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~--s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
+.+++.++|+||||||||++|.++|.+.+.++++++. .+....+..+.+..+..+.+...... +|+||+++.+...
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~ 197 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGA 197 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC--
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEecccccccc
Confidence 3445668999999999999999999876555444443 34333344455666666666665544 9999999998654
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHH
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA 363 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~a 363 (489)
......... ..+...+++..+.++.... ++.+|+++| +...+++
T Consensus 198 ~~~~s~~G~-v~~~lrqlL~~L~~~~k~~-gvtVIlttn-p~s~dea 241 (331)
T 2vhj_A 198 AGGNTTSGG-ISRGAFDLLSDIGAMAASR-GCVVIASLN-PTSNDDK 241 (331)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH-TCEEEEECC-CSSCSSS
T ss_pred cccccccch-HHHHHHHHHHHHHHHHhhC-CCEEEEEeC-Ccccchh
Confidence 322000000 0122333444443332222 245677777 4444444
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.5e-08 Score=98.12 Aligned_cols=99 Identities=21% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCCccccCcH----HHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEecc
Q 011305 205 DVKWESIKGLE----NAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (489)
Q Consensus 205 ~~~~~dliG~e----~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s 276 (489)
+.+|+++++.. .+.+.+.+++..+ + ..+..+++|+||||||||++|+++|+++ +.+++.++++
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~ 190 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFP 190 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHH
Confidence 36799988643 2333333333321 1 0124799999999999999999999866 4788888888
Q ss_pred chhhhhccch-HHHHHHHHHHHHhcCCcEEEEchhhhHH
Q 011305 277 SVVSKWRGDS-EKLIKVLFELARHHAPSTIFLDEIDAII 314 (489)
Q Consensus 277 ~l~~~~~g~~-~~~l~~lf~~A~~~~p~VL~IDEiD~l~ 314 (489)
++........ .......+.... .+.+|+|||++...
T Consensus 191 ~l~~~l~~~~~~~~~~~~~~~~~--~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 191 SFAIDVKNAISNGSVKEEIDAVK--NVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHCCCC----CCTTHHHH--TSSEEEEETCCC--
T ss_pred HHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCC
Confidence 7765433211 111112222222 34799999996653
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-07 Score=114.60 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=90.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~ 321 (489)
..++++.||+|||||++++++|+.+|.+++.++|++-.. ...+..+|..+.... +++++||++.+...--+
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~~~G-aw~~~DE~nr~~~evLs-- 715 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGITQIG-AWGCFDEFNRLDEKVLS-- 715 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHHHHT-CEEEEETTTSSCHHHHH--
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHHhcC-CEeeehhhhhcChHHHH--
Confidence 368999999999999999999999999999999987543 234566666665544 89999999987543211
Q ss_pred hhhHHHHHHHHHHHHHhc---------CC-ccCCCcEEEEEEeCC----CCcccHHHHhhcccccccCCCCHHHHHHHHH
Q 011305 322 SEHEASRRLKTELLIQMD---------GL-TQSDELVFVLAATNL----PWELDAAMLRRLEKRILVPLPDTEARRAMFE 387 (489)
Q Consensus 322 ~~~~~~~~i~~~LL~~ld---------g~-~~~~~~viVIatTn~----p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~ 387 (489)
...+.+..+...+. |. ..-.....|++|.|. ...|++++++|| +.+.+..||.+...+|+-
T Consensus 716 ----~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 716 ----AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF-REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp ----HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE-EEEECCCCCHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe-EEEEeeCCCHHHHHHHHH
Confidence 01111122222221 10 011234556777773 346999999999 679999999998888753
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-08 Score=90.75 Aligned_cols=110 Identities=16% Similarity=0.195 Sum_probs=63.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~ 320 (489)
..+++||+||||||||++|.++|+.+...++.+..+.. ..+ +... ....|++|||+|.-.
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~s-~f~-----------l~~l--~~~kIiiLDEad~~~------ 116 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-HFW-----------LEPL--TDTKVAMLDDATTTC------ 116 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSSS-CGG-----------GGGG--TTCSSEEEEEECHHH------
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEeccc-hhh-----------hccc--CCCCEEEEECCCchh------
Confidence 34679999999999999999999998765443211100 000 1111 123599999998421
Q ss_pred chhhHHHHHHHHHHHHHhcCCc----c--CC----CcEEEEEEeCCC---CcccHHHHhhcccccccCCC
Q 011305 321 RSEHEASRRLKTELLIQMDGLT----Q--SD----ELVFVLAATNLP---WELDAAMLRRLEKRILVPLP 377 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~~----~--~~----~~viVIatTn~p---~~Ld~al~rRf~~~i~~~~P 377 (489)
.+.+...+-..++|.. . +. ....+|.|||.+ +.--+.|.+|+ ..+.|+.|
T Consensus 117 ------~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~ 179 (212)
T 1tue_A 117 ------WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNA 179 (212)
T ss_dssp ------HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSC
T ss_pred ------HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCC
Confidence 1122334555666641 0 01 112356688875 22336788898 44666643
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=4.7e-06 Score=84.00 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=90.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CC-cEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhh-HHhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KT-TFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDA-IISQ 316 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~-~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~-l~~~ 316 (489)
.+.+||+||+|.||++.++.+++.+ +. ++..+... +. .+....+..+-.........|++|||++. +...
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~--~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~ 92 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PN--TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAA 92 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TT--CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTT
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CC--CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChH
Confidence 4689999999999999999999876 32 22222111 10 12222222222222233457999999987 5321
Q ss_pred hcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCC-----CCcccHHHHhhcccccccCCCCHHHHHHHHHHhcC
Q 011305 317 RGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNL-----PWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391 (489)
Q Consensus 317 r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~-----p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~ 391 (489)
..+.|+..++.. ..+.++|+++++. ...+.+++.+|+ ..+.+..++.++....++..+.
T Consensus 93 -------------~~~aLl~~le~p--~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~ 156 (343)
T 1jr3_D 93 -------------INEQLLTLTGLL--HDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAK 156 (343)
T ss_dssp -------------HHHHHHHHHTTC--BTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHhcC--CCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 346677877633 3344444444431 235778899998 5688888899999989988887
Q ss_pred CCCCCCCC-CHHHHHHHhcC
Q 011305 392 SQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 392 ~~~~~~~~-dl~~La~~t~G 410 (489)
..+...+. .++.++..+.|
T Consensus 157 ~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 157 QLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp HTTCEECHHHHHHHHHSSTT
T ss_pred HcCCCCCHHHHHHHHHHhch
Confidence 76655333 24445554443
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.1e-06 Score=106.16 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=78.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh----hhhc------------cchHHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV----SKWR------------GDSEKLIKVLFELARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~----~~~~------------g~~~~~l~~lf~~A~~ 299 (489)
..++++++|+||||||||+||.+++.+. |.....++..+.. .... ...+..+..++..++.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 4567899999999999999999998876 5667777765432 1111 2345677777888888
Q ss_pred cCCcEEEEchhhhHHhhhc---ccchhhH-HHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 300 HAPSTIFLDEIDAIISQRG---EARSEHE-ASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~~r~---~~~~~~~-~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.+|++|+||+++.+.+... .....+. ...+++.++|..|.+...... +.|| +||..
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~-v~VI-~tNq~ 1563 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN-TLLI-FINQI 1563 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT-CEEE-EEECE
T ss_pred CCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC-cEEE-EEccc
Confidence 9999999999998876431 1111111 134567777777776654443 4444 55543
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.9e-06 Score=107.83 Aligned_cols=137 Identities=21% Similarity=0.331 Sum_probs=85.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEeccchhhhhccchHHHHHHHHHHH----Hh------------cCCcE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNISASSVVSKWRGDSEKLIKVLFELA----RH------------HAPST 304 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A----~~------------~~p~V 304 (489)
.+++||+||||||||++++.+...+ +.+++.++++.-. ....+...+... +. .+..|
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~V 1377 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLV 1377 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEE
Confidence 4789999999999998876655544 6677888886543 223343334321 00 11259
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC-------CCcEEEEEEeCCCC-----cccHHHHhhccccc
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAATNLPW-----ELDAAMLRRLEKRI 372 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~-------~~~viVIatTn~p~-----~Ld~al~rRf~~~i 372 (489)
+||||++.-..+.-+... .-.++.+++..- +.... -..+.+|+|+|.|. .+++++.||| ..+
T Consensus 1378 lFiDDiNmp~~D~yGtQ~----~ielLrqlld~~-g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi 1451 (3245)
T 3vkg_A 1378 VFCDEINLPSTDKYGTQR----VITFIRQMVEKG-GFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PIL 1451 (3245)
T ss_dssp EEETTTTCCCCCTTSCCH----HHHHHHHHHHHS-EEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEE
T ss_pred EEecccCCCCcccccccc----HHHHHHHHHHcC-CeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEE
Confidence 999999864333211111 122333333221 11111 13577899999883 4999999999 559
Q ss_pred ccCCCCHHHHHHHHHHhc
Q 011305 373 LVPLPDTEARRAMFESLL 390 (489)
Q Consensus 373 ~~~~Pd~~eR~~IL~~~l 390 (489)
.++.|+.++...|+..++
T Consensus 1452 ~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1452 LVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp ECCCCCHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999976544
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-06 Score=84.67 Aligned_cols=29 Identities=41% Similarity=0.567 Sum_probs=25.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
++.++++|+||||||||++|+++|+.+..
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 33468999999999999999999998654
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=6.2e-06 Score=103.20 Aligned_cols=136 Identities=16% Similarity=0.146 Sum_probs=88.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~ 322 (489)
.+..+.||+|||||.+++.+|+.+|.+++.++|++-.. ...+..+|.-+... .+..++||++.+...--+.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d------~~~~g~i~~G~~~~-GaW~cfDEfNrl~~~vLSv-- 675 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD------LQAMSRIFVGLCQC-GAWGCFDEFNRLEERILSA-- 675 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC------HHHHHHHHHHHHHH-TCEEEEETTTSSCHHHHHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC------HHHHHHHHhhHhhc-CcEEEehhhhcCCHHHHHH--
Confidence 56789999999999999999999999999999986432 23455566555544 3799999999875431100
Q ss_pred hhHHHHHHHHHHHHH-----hc-CC-ccCCCcEEEEEEeCC----CCcccHHHHhhcccccccCCCCHHHHHHHHHH
Q 011305 323 EHEASRRLKTELLIQ-----MD-GL-TQSDELVFVLAATNL----PWELDAAMLRRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 323 ~~~~~~~i~~~LL~~-----ld-g~-~~~~~~viVIatTn~----p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
-......++..+... ++ |. ..-.....|++|.|. ...|++++++|| +.+.+..||.+...+|+-.
T Consensus 676 v~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L~ 751 (3245)
T 3vkg_A 676 VSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF-RSMAMIKPDREMIAQVMLY 751 (3245)
T ss_dssp HHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc-EEEEEeCCCHHHHHHHHHH
Confidence 000011112222211 01 21 111234556777773 246999999999 6699999999888887543
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.2e-05 Score=73.83 Aligned_cols=28 Identities=32% Similarity=0.533 Sum_probs=24.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+.|.||+|+||||+++.++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998865443
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=84.19 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=85.9
Q ss_pred CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE---------eC---CCCcccHHHHhhcc
Q 011305 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA---------TN---LPWELDAAMLRRLE 369 (489)
Q Consensus 302 p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat---------Tn---~p~~Ld~al~rRf~ 369 (489)
|.|+||||+|.|. ....+.|+..|+.. ...++|+++ ++ .+..+++.+++||.
T Consensus 296 ~~VliIDEa~~l~-------------~~a~~aLlk~lEe~---~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 296 PGVLFVDEVHMLD-------------IECFTYLHRALESS---IAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVM 359 (456)
T ss_dssp ECEEEEESGGGCB-------------HHHHHHHHHHTTST---TCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEE
T ss_pred ceEEEEechhhcC-------------HHHHHHHHHHhhcc---CCCEEEEecCCccccccccccccccccCChhHHhhcc
Confidence 4699999999984 23667888888733 233555454 22 16679999999997
Q ss_pred cccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHh-cCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCC
Q 011305 370 KRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERT-EGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 447 (489)
Q Consensus 370 ~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t-~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~ 447 (489)
. +.|+.|+.++..++++..+.......+. .+..++... .| +++..-.+++.|...+.. ++.
T Consensus 360 ~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~~------~~~--------- 422 (456)
T 2c9o_A 360 I-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAKI------NGK--------- 422 (456)
T ss_dssp E-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHHH------TTC---------
T ss_pred e-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhh------cCC---------
Confidence 7 6999999999999999887544433222 244555555 33 556555555555443322 111
Q ss_pred CCCCCCCHHHHHHHHhhhC
Q 011305 448 PQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 448 ~~~~~It~eDf~~AL~~~~ 466 (489)
..|+.+|+.+++..+-
T Consensus 423 ---~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 423 ---DSIEKEHVEEISELFY 438 (456)
T ss_dssp ---SSBCHHHHHHHHHHSC
T ss_pred ---CccCHHHHHHHHHHhc
Confidence 2499999999987553
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.6e-06 Score=89.31 Aligned_cols=115 Identities=15% Similarity=0.082 Sum_probs=69.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHh-hh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIIS-QR 317 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~-~r 317 (489)
.+++..++|+||||+||||++++++..++..++.+...+- .....+. ...+..++++||++.+.. .+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~------~~~~~lg------~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLD------RLNFELG------VAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTT------THHHHHG------GGTTCSCEEETTCCCSTTTTT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccch------hHHHHHH------HhcchhHHHHHHHHHHHHHHh
Confidence 4566789999999999999999999998877665433221 0011111 122346789999998865 22
Q ss_pred cccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHh--hcccccccC
Q 011305 318 GEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVP 375 (489)
Q Consensus 318 ~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~r--Rf~~~i~~~ 375 (489)
......... ....+...++|. +.|+.+||+++.+ +++++ |++..+...
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l 283 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGS------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSV 283 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCS------SCEEECCSSSCCE-EECCCCEEEEECSCCC
T ss_pred hccccCcch---HHHHHHHHhcCC------CeEeeccCchhhH-HHhhcCcccChhHHhh
Confidence 111101110 123344555543 3467789999888 45555 565555443
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00017 Score=77.69 Aligned_cols=168 Identities=14% Similarity=0.098 Sum_probs=93.7
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH-------hCCcEEEEeccch
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE-------CKTTFFNISASSV 278 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e-------l~~~~i~v~~s~l 278 (489)
.....++|.+...+.|.+.+... ....+.++|+||+|+|||++|+.+++. ....++.++.+..
T Consensus 121 ~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 121 QRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp CCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 34568999999999999877431 122367899999999999999999753 2122344433221
Q ss_pred -----hhhh------c-----------cchHHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHH
Q 011305 279 -----VSKW------R-----------GDSEKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL 335 (489)
Q Consensus 279 -----~~~~------~-----------g~~~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL 335 (489)
.... . .........+...... .+|.+|+||+++... .+
T Consensus 191 ~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~-------------------~l 251 (591)
T 1z6t_A 191 DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSW-------------------VL 251 (591)
T ss_dssp CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHH-------------------HH
T ss_pred chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHH-------------------HH
Confidence 1000 0 0111122222222222 267999999996421 11
Q ss_pred HHhcCCccCCCcEEEEEEeCCCCcccHHHHhhccccccc---CCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 336 IQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILV---PLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 336 ~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~---~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
..+ ..+..||.||..+..... . . ...+.+ ...+.++-.+++...+.............+++.+.|..
T Consensus 252 ~~l------~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 252 KAF------DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HTT------CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HHh------cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 111 122345667765432211 0 0 122233 35788888999988775422222344677888888764
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00015 Score=67.72 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.++..++|.||+|+|||++++.++... +.+++.++.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 4455779999999999999999999654 556666654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00039 Score=80.69 Aligned_cols=172 Identities=11% Similarity=0.047 Sum_probs=98.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh-------CCcEEEEecc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC-------KTTFFNISAS 276 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el-------~~~~i~v~~s 276 (489)
.+.....++|.+...++|.+.+...- ...+-+.|+|+.|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 34445679999999999998874321 223568899999999999999998752 1223344433
Q ss_pred chhh-----h----------------hccchHHHHHHHHHHHHhc--CCcEEEEchhhhHHhhhcccchhhHHHHHHHHH
Q 011305 277 SVVS-----K----------------WRGDSEKLIKVLFELARHH--APSTIFLDEIDAIISQRGEARSEHEASRRLKTE 333 (489)
Q Consensus 277 ~l~~-----~----------------~~g~~~~~l~~lf~~A~~~--~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~ 333 (489)
.... . ........+...+...... ++.+|+||+++...
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------- 249 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------- 249 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH-------------------
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH-------------------
Confidence 2100 0 0001112222223222222 36899999997431
Q ss_pred HHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCC-CCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 334 LLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPL-PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 334 LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~-Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
.++.+ .....||.||..+..... . ..-...+.++. .+.++-.+++................+|++.+.|..
T Consensus 250 ---~~~~~---~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 250 ---VLKAF---DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp ---HHTTT---CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred ---HHHhh---cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 11112 122346667776543211 0 11234566665 788898999988774433333344677888888764
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=8.7e-05 Score=74.43 Aligned_cols=78 Identities=18% Similarity=0.270 Sum_probs=52.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchh-hh-------hcc----------------c
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVV-SK-------WRG----------------D 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~-~~-------~~g----------------~ 285 (489)
++++..++|+||||+|||+++..++... +.++++++..... .. ..| .
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~ 183 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAIN 183 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCC
Confidence 4566789999999999999999999875 5678888775421 00 000 1
Q ss_pred hH---HHHHHHHHHHHh-cCCcEEEEchhhhHHhh
Q 011305 286 SE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 286 ~~---~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~ 316 (489)
.+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 184 ~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 184 TDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 11 123334444444 67899999999998753
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.73 E-value=6e-05 Score=71.27 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=50.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH--h-------CCcEEEEeccchh--h------hhcc----------------c
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE--C-------KTTFFNISASSVV--S------KWRG----------------D 285 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e--l-------~~~~i~v~~s~l~--~------~~~g----------------~ 285 (489)
+.++..++|+||||+|||++++.++.. + +...++++..+.. . ...+ .
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFN 100 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCS
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCC
Confidence 456678999999999999999999985 2 4567777765410 0 0000 0
Q ss_pred hH---HHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 286 SE---KLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 286 ~~---~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.. ..+..+........|.+|+|||+..+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 101 TDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11 11222334444567899999999887643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0001 Score=75.07 Aligned_cols=78 Identities=22% Similarity=0.264 Sum_probs=53.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
++.++.-++|+||||+|||+|+..++..+ +.++++++..+.... .....+..+..+-...+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 35566789999999999999999999875 667888876543211 01122333333333344
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...+.+++||.+..+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 56789999999988875
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00013 Score=74.63 Aligned_cols=77 Identities=22% Similarity=0.311 Sum_probs=52.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----c------------cchHHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----R------------GDSEKLIKVLFELARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----~------------g~~~~~l~~lf~~A~~ 299 (489)
++++..++|+||||+|||++|..++... +.++++++...-.... . ...+..+..+-...+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~ 150 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 150 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhc
Confidence 4566789999999999999999998765 6788888765422111 0 1122333333333344
Q ss_pred cCCcEEEEchhhhHHh
Q 011305 300 HAPSTIFLDEIDAIIS 315 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~ 315 (489)
..+.+|+||.+..+.+
T Consensus 151 ~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 151 GAIDVVVVDSVAALTP 166 (366)
T ss_dssp TCCSEEEEECTTTCCC
T ss_pred CCCCEEEEeChHHhcc
Confidence 6689999999999874
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00021 Score=66.36 Aligned_cols=40 Identities=20% Similarity=0.223 Sum_probs=33.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
.+.++.-++|+||||+|||++++.++...+.++++++..+
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 3566678999999999999999999986677888887654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00017 Score=72.91 Aligned_cols=79 Identities=18% Similarity=0.161 Sum_probs=52.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhh-h-------hcc----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVS-K-------WRG---------------- 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~-~-------~~g---------------- 284 (489)
.++++.-++|+||||+|||+++..+|... +.++++++...... . ..|
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 35666778999999999999999999873 56778887654210 0 000
Q ss_pred chH---HHHHHHHHHHHh--cCCcEEEEchhhhHHhh
Q 011305 285 DSE---KLIKVLFELARH--HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 285 ~~~---~~l~~lf~~A~~--~~p~VL~IDEiD~l~~~ 316 (489)
..+ ..+..+...... ..+.+|+||.+..+...
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 011 122223344444 66789999999998754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00014 Score=68.02 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEecc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISAS 276 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s 276 (489)
..++.-+.|.||+|+||||+++.++... +...++++..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 4556779999999999999999999854 2336666654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=97.66 E-value=9.5e-05 Score=75.17 Aligned_cols=78 Identities=23% Similarity=0.288 Sum_probs=52.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----cc------------chHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG------------DSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----~g------------~~~~~l~~lf~~A~ 298 (489)
.+.++..++|+||||+|||+++..++... +.++++++........ .| ..+..+..+...++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34566789999999999999999998765 5677777764322110 11 12223333333344
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...|.+|+||++..+.+
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 56789999999999874
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=4.3e-05 Score=68.92 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=31.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..++|.|+||+||||+++++++.++.+++.++...+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 578999999999999999999999999887775544
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.54 E-value=0.0002 Score=72.91 Aligned_cols=77 Identities=26% Similarity=0.341 Sum_probs=51.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----cc-----------chHHHHHHHHH-HHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----RG-----------DSEKLIKVLFE-LARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----~g-----------~~~~~l~~lf~-~A~~ 299 (489)
++++..++|+||||+|||++|..++... +.++++++........ .| .....+..+.. ..+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~ 139 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 139 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhc
Confidence 4566789999999999999999998765 6778888874321110 00 11122222222 3345
Q ss_pred cCCcEEEEchhhhHHh
Q 011305 300 HAPSTIFLDEIDAIIS 315 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~ 315 (489)
..+.+|+||.+..+..
T Consensus 140 ~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 140 GAVDVIVVDSVAALTP 155 (356)
T ss_dssp TCCSEEEEECGGGCCC
T ss_pred cCCCEEEEcCHHHhcc
Confidence 6789999999999874
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.47 E-value=6.4e-05 Score=68.32 Aligned_cols=32 Identities=28% Similarity=0.438 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++.++|.|||||||||+++.+|+.++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 46799999999999999999999999988754
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0002 Score=75.29 Aligned_cols=56 Identities=21% Similarity=0.399 Sum_probs=35.7
Q ss_pred hhhcCCCCCCCcccc-CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 198 DIIRGSPDVKWESIK-GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 198 ~~~~~~~~~~~~dli-G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+..++.+.+|+++- ++..+...+...+.. ....++|.|+||||||+++.+++..+
T Consensus 13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 455566778888885 555555555544422 12389999999999999999999877
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00019 Score=68.38 Aligned_cols=71 Identities=15% Similarity=0.123 Sum_probs=44.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc-------hhhhhccch-----HHHHHHHHHHHHh----cCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS-------VVSKWRGDS-----EKLIKVLFELARH----HAP 302 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~-------l~~~~~g~~-----~~~l~~lf~~A~~----~~p 302 (489)
+.-++++||+|+||||++..++..+ +..++.+.... +.+. .|-. -.....++..+.. ..+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~ 90 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDET 90 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCC
Confidence 4567889999999999999888776 56666664322 1111 1100 0011234554443 347
Q ss_pred cEEEEchhhhH
Q 011305 303 STIFLDEIDAI 313 (489)
Q Consensus 303 ~VL~IDEiD~l 313 (489)
.+|+|||+..+
T Consensus 91 dvViIDEaQ~l 101 (223)
T 2b8t_A 91 KVIGIDEVQFF 101 (223)
T ss_dssp CEEEECSGGGS
T ss_pred CEEEEecCccC
Confidence 89999999765
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00031 Score=85.15 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=56.5
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc----------------cchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR----------------GDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~----------------g~~~~~l~~lf~~A~ 298 (489)
+.+++..++|+||||||||++|.+++.+. |.+.++++..+...... +..+...+-.....+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 35677899999999999999999998765 78888888876543222 111222333334445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
..+|.+|+||++..+.+.
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999998654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0003 Score=72.84 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=49.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhhh--------hcc----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSK--------WRG---------------- 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~~--------~~g---------------- 284 (489)
++.++.-++|+||||+|||+|++.++-.. +...++++..+.... ..|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 35666779999999999999999876433 344777776542110 001
Q ss_pred ch---HHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 285 DS---EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 285 ~~---~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.. ...+..+........|.+|+||++-.+...
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 01 112223333444567899999999887653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00046 Score=70.02 Aligned_cols=39 Identities=26% Similarity=0.320 Sum_probs=31.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccc
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASS 277 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~ 277 (489)
..++.-+.|+||+|+|||+|++.++... +...++++..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5566779999999999999999999886 24567777644
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.40 E-value=9e-05 Score=68.58 Aligned_cols=34 Identities=35% Similarity=0.504 Sum_probs=29.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++..++|.|||||||||+++.+++.++.+++..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 4557899999999999999999999999887643
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0014 Score=70.43 Aligned_cols=74 Identities=14% Similarity=0.239 Sum_probs=53.1
Q ss_pred cEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--cccHHHHhhcccccccCCCCHH
Q 011305 303 STIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTE 380 (489)
Q Consensus 303 ~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~--~Ld~al~rRf~~~i~~~~Pd~~ 380 (489)
-+|+|||+..+..... ......+..+.. ..+.-++-+|.+|.+|. .++..+++-|...+.+...+..
T Consensus 345 ivvVIDE~~~L~~~~~------~~~~~~L~~Iar-----~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~ 413 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG------KKVEELIARIAQ-----KARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKI 413 (574)
T ss_dssp EEEEESCCTTHHHHTC------HHHHHHHHHHHH-----HCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHH
T ss_pred EEEEEeCHHHHhhhhh------HHHHHHHHHHHH-----HHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHH
Confidence 4899999998875421 111222233332 23445688899999997 7999999999999999999998
Q ss_pred HHHHHHH
Q 011305 381 ARRAMFE 387 (489)
Q Consensus 381 eR~~IL~ 387 (489)
+...|+.
T Consensus 414 Dsr~ILd 420 (574)
T 2iut_A 414 DSRTILD 420 (574)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 8887874
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00038 Score=69.42 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=51.2
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------------C----CcEEEEeccchh-hh----h---cc------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------------K----TTFFNISASSVV-SK----W---RG------ 284 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------------~----~~~i~v~~s~l~-~~----~---~g------ 284 (489)
+++++.-++|+||||+|||+++..++... | .++++++...-. .. + .|
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 34566779999999999999999999763 2 577888765421 00 0 00
Q ss_pred ----------chH---HHHHHHHHHHHh-cCCcEEEEchhhhHHhh
Q 011305 285 ----------DSE---KLIKVLFELARH-HAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 285 ----------~~~---~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~ 316 (489)
..+ ..+..+....+. ..+.+|+||.+..+...
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 111 122233344444 56789999999998753
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00062 Score=65.54 Aligned_cols=39 Identities=28% Similarity=0.324 Sum_probs=33.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
..+..++|.|+||+||||+++.++..++..++.++...+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345679999999999999999999999877777777655
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00061 Score=67.16 Aligned_cols=38 Identities=32% Similarity=0.427 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+..++|.||||+||||+++.++++++..++.|++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35678999999999999999999998656677776444
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0021 Score=68.98 Aligned_cols=166 Identities=12% Similarity=0.003 Sum_probs=89.3
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHH----HhCCcE---EEEeccch-----h
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT----ECKTTF---FNISASSV-----V 279 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~----el~~~~---i~v~~s~l-----~ 279 (489)
+|.+..+++|.+.+...- ....+.|.|+|+.|+|||+||+.+++ .....| +.++.+.. .
T Consensus 131 ~GR~~~~~~l~~~L~~~~---------~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~ 201 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---------DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTF 201 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---------TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHH
T ss_pred CCchHHHHHHHHHHhccc---------CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHH
Confidence 599999999998874320 11236788999999999999999997 332222 23333221 0
Q ss_pred -------hhhcc------------chHHHHHHHHHHHHhc-CCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 280 -------SKWRG------------DSEKLIKVLFELARHH-APSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 280 -------~~~~g------------~~~~~l~~lf~~A~~~-~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
..... .....+...+...... ++.+|+||+++... .+ .+.. .
T Consensus 202 ~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--------------~~--~~~~-~- 263 (549)
T 2a5y_B 202 DLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--------------TI--RWAQ-E- 263 (549)
T ss_dssp HHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--------------HH--HHHH-H-
T ss_pred HHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--------------hh--cccc-c-
Confidence 00000 0111122233333333 36899999997631 01 1111 1
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC--CCHHHHHHHhcCCc
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES--LPYDLLVERTEGYS 412 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~--~dl~~La~~t~G~s 412 (489)
.+ ..||.||....... . .......+.++..+.++-.+++............ .....+++.+.|..
T Consensus 264 ----~g--s~ilvTTR~~~v~~-~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 264 ----LR--LRCLVTTRDVEISN-A-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp ----TT--CEEEEEESBGGGGG-G-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred ----CC--CEEEEEcCCHHHHH-H-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCCh
Confidence 12 23556776533211 0 0112245788888999999999988543321011 01345666677653
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0037 Score=65.35 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-----------
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------- 280 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----------- 280 (489)
+.+++.+.+.+...+..+........++..+++.|++|+||||++..+|..+ |..+..+++.....
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~ 152 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIKEKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLD 152 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCCSSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhcCcccccccCCCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHH
Confidence 4555566555554333211111112346789999999999999999999876 66666666542211
Q ss_pred ---------hhccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 281 ---------KWRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 281 ---------~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
....+....+...+..+....+.+++||..-.
T Consensus 153 ~~gvpv~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGr 193 (443)
T 3dm5_A 153 RYHIEVFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGR 193 (443)
T ss_dssp GGTCEEECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCC
T ss_pred hcCCcEEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCc
Confidence 01123344556667777776779999998843
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0016 Score=61.38 Aligned_cols=39 Identities=23% Similarity=0.294 Sum_probs=30.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
...++..++|.||||+|||+++..++... +.++++++..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 35566789999999999999998887654 5667766643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00031 Score=64.68 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.-++++||+|+||||++..++..+ +.+++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~ 38 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFK 38 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 457899999999999996666654 55555443
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00017 Score=65.33 Aligned_cols=32 Identities=41% Similarity=0.697 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|+|+||+||||+++.+++.++.+++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 46799999999999999999999999877643
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00018 Score=64.13 Aligned_cols=31 Identities=29% Similarity=0.247 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.|+|.||||+||||+++.+++.++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998876544
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00023 Score=64.74 Aligned_cols=33 Identities=33% Similarity=0.427 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+..++|.|+||+||||+++.+++.++.+++..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 346799999999999999999999999877653
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00017 Score=64.55 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+++|.|+|||||||+++.+|+.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999988753
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00022 Score=64.28 Aligned_cols=29 Identities=34% Similarity=0.642 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.++|.|||||||||+++.+|+.++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 68999999999999999999999987764
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=65.33 Aligned_cols=31 Identities=23% Similarity=0.492 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..|+|.|+|||||||+++.+++.++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 3589999999999999999999999887643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00029 Score=63.02 Aligned_cols=29 Identities=31% Similarity=0.750 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..+.|.||+||||||+++.++..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 56999999999999999999999987654
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0002 Score=65.39 Aligned_cols=32 Identities=38% Similarity=0.542 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-hCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE-CKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e-l~~~~i~v 273 (489)
+..++|+|+|||||||+++.+++. +|.+++.+
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 457999999999999999999999 68766543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00024 Score=64.75 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=32.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.++..+.|.||+|+||||+++.++...+...+.++..++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 445679999999999999999999987777777776554
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0006 Score=81.69 Aligned_cols=78 Identities=26% Similarity=0.327 Sum_probs=53.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh----hhcc------------chHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----KWRG------------DSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----~~~g------------~~~~~l~~lf~~A~ 298 (489)
++.++..++|+||||+|||++|..+|..+ +.++++++..+... ...| ..+.....+-...+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 35667789999999999999999998876 56788888654331 1111 11222222222233
Q ss_pred hcCCcEEEEchhhhHHh
Q 011305 299 HHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~ 315 (489)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 57899999999999874
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0016 Score=64.84 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=55.1
Q ss_pred HHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh----
Q 011305 217 AKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW---- 282 (489)
Q Consensus 217 ~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~---- 282 (489)
+++.+.+.+...+.......-...++..++|.||+|+||||++..+|..+ +..+..+++..... .|
T Consensus 79 ~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~ 158 (306)
T 1vma_A 79 ALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERV 158 (306)
T ss_dssp HHHHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHc
Confidence 45555555544332221111013455778999999999999999999876 55565555432110 00
Q ss_pred ---------ccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 283 ---------RGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 283 ---------~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.++........+..+....|.+++||+.-
T Consensus 159 gl~~~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 159 GATVISHSEGADPAAVAFDAVAHALARNKDVVIIDTAG 196 (306)
T ss_dssp TCEEECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECC
T ss_pred CCcEEecCCccCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 11222233334555566778999999884
|
| >2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=6.1e-05 Score=63.66 Aligned_cols=82 Identities=12% Similarity=0.101 Sum_probs=67.0
Q ss_pred hHHHHHHHHhhhhhhhhhhhccccCCCcee--eeccCCCcccceeeEEEecc-ccc-hhh-----hhhHHHHHHHHHHHH
Q 011305 14 IRALTKCLKEGIITSRFIISKFIIGPPHAF--FYSFGSPPFQFSLAIQLAGC-CSV-ETE-----RERFFFFLIFILSAI 84 (489)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~-~~~-----~~~~~~~~~~~~~~~ 84 (489)
+..+..||+.+|.+++-+|.-|+.|.++-+ +|..|+.++..|++|.++|+ |+. +-| .+||..+|-.+..||
T Consensus 12 l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL 91 (116)
T 2dl1_A 12 IKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRL 91 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566889999999999999999999999998 99999999999999999985 322 222 455999999999999
Q ss_pred HHHHhhCCCcc
Q 011305 85 SLLLRLSNLSA 95 (489)
Q Consensus 85 ~~~~~~~~~~~ 95 (489)
..+=-.+.+|+
T Consensus 92 ~~Le~~~~~~~ 102 (116)
T 2dl1_A 92 EILEKGLATSL 102 (116)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHhcCCCcc
Confidence 64443444333
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=64.34 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+|.|+|||||||+++.+++.++.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 3578999999999999999999999987643
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00094 Score=64.58 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---hCCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE---CKTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e---l~~~~i~v~~s~l~ 279 (489)
+.-|+|.|+||+||||+++.++.. .|.+++.++...+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~ 44 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR 44 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH
Confidence 357899999999999999999998 68888767665443
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00028 Score=65.13 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+||+||||+++.+++.++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 35689999999999999999999999886544
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0028 Score=59.73 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=51.6
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEeccchhhhhc------------------------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATE----CKTTFFNISASSVVSKWR------------------------------ 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~e----l~~~~i~v~~s~l~~~~~------------------------------ 283 (489)
+.+++.-++|+|+||+|||++|..+|.. .+.++++++...-.....
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 105 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVVG 105 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC-------
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHHcCCChHHHHhcCcchhhhhHHHHhh
Confidence 4566678999999999999999887653 267777776432111000
Q ss_pred ------------cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 284 ------------GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 284 ------------g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
......+..+........+.+++||.+..+...
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vviD~~~~l~~~ 150 (251)
T 2zts_A 106 LPSEEKFVLEDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALR 150 (251)
T ss_dssp ------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHH
T ss_pred cccchhccccccccHHHHHHHHHHHHHhcCCcEEEEEcHHHHhhh
Confidence 011223344445556677899999999888654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00027 Score=64.40 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++..++|.|+|||||||+++.+++.++.+++..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 346799999999999999999999999876544
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0063 Score=64.74 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=50.8
Q ss_pred EEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCC--cccHHHHhhcccccccCCCCHHH
Q 011305 304 TIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPW--ELDAAMLRRLEKRILVPLPDTEA 381 (489)
Q Consensus 304 VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~--~Ld~al~rRf~~~i~~~~Pd~~e 381 (489)
+|+|||+..+..... .....++..+... .+.-.+-+|.+|.+|. .++..+++.|...+.+...+..+
T Consensus 300 vlvIDE~~~ll~~~~------~~~~~~l~~Lar~-----gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 300 VVLVDEFADLMMTVG------KKVEELIARLAQK-----ARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp EEEEETHHHHHHHHH------HHHHHHHHHHHHH-----CGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred EEEEeCHHHHHhhhh------HHHHHHHHHHHHH-----hhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 899999988764211 1112222223222 1233477788999987 58889999999999999999999
Q ss_pred HHHHHHH
Q 011305 382 RRAMFES 388 (489)
Q Consensus 382 R~~IL~~ 388 (489)
...|+..
T Consensus 369 sr~ilg~ 375 (512)
T 2ius_A 369 SRTILDQ 375 (512)
T ss_dssp HHHHHSS
T ss_pred HHHhcCC
Confidence 8888764
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00027 Score=62.63 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++|.||||+||||+++.+ +.+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887653
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0011 Score=66.21 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=49.1
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhh-h---cc------------chHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK-W---RG------------DSEKLIKVLFEL 296 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~-~---~g------------~~~~~l~~lf~~ 296 (489)
++.++ -++|+||||+|||+|+-.++... +..+++++..+-... + .| ..+...-.+.+.
T Consensus 25 Gl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 25 GMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 34454 58999999999999988876654 567888887542211 0 01 122220122222
Q ss_pred ---HHhcCCcEEEEchhhhHHh
Q 011305 297 ---ARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 297 ---A~~~~p~VL~IDEiD~l~~ 315 (489)
.+...|.+|+||-+..+.+
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBC
T ss_pred HHHhhccCceEEEEeccccccc
Confidence 2456789999999999975
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00044 Score=64.80 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 46799999999999999999999999876543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00035 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+..++|.|+|||||||+++.+++.++.+++
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i 33 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKL 33 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 356899999999999999999999987654
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00035 Score=67.47 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
.++|.|||||||||+|+.+|+.++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 57899999999999999999999988876654
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00032 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+..|+|.|+||+||||+++.+++.++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999999877
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00043 Score=61.82 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..|+|.|+|||||||+++.+++.++.+++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 468999999999999999999999987664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0073 Score=62.97 Aligned_cols=73 Identities=18% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh----------hh----------ccchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS----------KW----------RGDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~----------~~----------~g~~~~~l~~lf~~A 297 (489)
++..+++.||+|+||||++..+|..+ +..+..+++.-... .. ...........+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45778999999999999999999876 66666665432110 00 011222334445555
Q ss_pred HhcCCcEEEEchhhhH
Q 011305 298 RHHAPSTIFLDEIDAI 313 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l 313 (489)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5557899999988543
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0075 Score=56.09 Aligned_cols=114 Identities=12% Similarity=0.104 Sum_probs=66.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc---------chhhhhc-------------c----chHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS---------SVVSKWR-------------G----DSEKLIKVL 293 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s---------~l~~~~~-------------g----~~~~~l~~l 293 (489)
..|++|+++|.||||+|-++|-.. |.++..+... .+..... . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 468899999999999999998876 7777766221 1222220 0 012333444
Q ss_pred HHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcc
Q 011305 294 FELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLE 369 (489)
Q Consensus 294 f~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~ 369 (489)
+..++. ....+|+|||+.....-.- .+ ...++..+. .++...-||.|+|.+ ++++...-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~---l~-------~~ev~~~l~---~Rp~~~~vIlTGr~a---p~~l~e~AD 172 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDY---LP-------LEEVISALN---ARPGHQTVIITGRGC---HRDILDLAD 172 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTS---SC-------HHHHHHHHH---TSCTTCEEEEECSSC---CHHHHHHCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCC---CC-------HHHHHHHHH---hCcCCCEEEEECCCC---cHHHHHhCc
Confidence 555443 4478999999976533211 10 123445554 344445677788874 566666544
Q ss_pred ccc
Q 011305 370 KRI 372 (489)
Q Consensus 370 ~~i 372 (489)
.+-
T Consensus 173 ~VT 175 (196)
T 1g5t_A 173 TVS 175 (196)
T ss_dssp EEE
T ss_pred cee
Confidence 433
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00039 Score=63.51 Aligned_cols=32 Identities=25% Similarity=0.417 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+||+||||+++.+++.++.+++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35799999999999999999999999765543
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00045 Score=62.54 Aligned_cols=32 Identities=16% Similarity=0.321 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35789999999999999999999999766543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00058 Score=62.99 Aligned_cols=31 Identities=29% Similarity=0.597 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+|.|++|+||||+++.+++.++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0004 Score=62.29 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HhCCc
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT-ECKTT 269 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~-el~~~ 269 (489)
..++|.|+||+||||+++.+++ .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 5689999999999999999998 45543
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00047 Score=62.43 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++|.|+||+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999999887
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00047 Score=66.09 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++..|+|.||||+||||+++.+++.++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 457899999999999999999999998766543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0004 Score=65.44 Aligned_cols=32 Identities=19% Similarity=0.433 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..++|.|+|||||||+++.+++.++.+++..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 46799999999999999999999998876643
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00082 Score=72.77 Aligned_cols=32 Identities=34% Similarity=0.368 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
..+++.||||||||+++.+++..+ +.+++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 578999999999999999998865 56665554
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00042 Score=64.59 Aligned_cols=30 Identities=20% Similarity=0.453 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.|+|.|||||||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998876654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00067 Score=60.92 Aligned_cols=35 Identities=26% Similarity=0.451 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+..++|.||+|+||||+++.++..+|..++ +..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i--~~d~~ 42 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL--DGDFL 42 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE--EGGGG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE--eCccc
Confidence 457899999999999999999999886554 44443
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0005 Score=63.34 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=27.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 35689999999999999999999998766544
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00043 Score=61.58 Aligned_cols=29 Identities=21% Similarity=0.413 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.|+|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999999987764
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00042 Score=64.52 Aligned_cols=30 Identities=27% Similarity=0.507 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.|+|.||||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999998876644
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00067 Score=64.28 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|+|.|+|||||||+++.+++.++.+++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 46799999999999999999999999776543
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00044 Score=69.45 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=30.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
+.++|.||+|||||++++.+|+.++..++.++..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 5789999999999999999999999888877654
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00068 Score=64.21 Aligned_cols=40 Identities=23% Similarity=0.434 Sum_probs=32.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
...++-|+|.||||+||+|.|+.|++.++.+ .++..++..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~--hIstGdllR 65 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFN--HLSSGDLLR 65 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCE--EECHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCc--eEcHHHHHH
Confidence 3455778999999999999999999999875 456556554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0065 Score=59.02 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-++|+||+|+|||+++..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4456779999999999999999998754
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00044 Score=70.21 Aligned_cols=53 Identities=15% Similarity=0.240 Sum_probs=37.8
Q ss_pred cCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 212 KGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 212 iG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..+.+.+.+.+.+...+.. ....+++|.||+|+||||+++++|+.++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 34556666666555443321 112469999999999999999999999888755
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00083 Score=62.05 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
++..+.|.||+|+||||+++.++..+|..+ ++..++
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 346789999999999999999999997644 444443
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0005 Score=64.47 Aligned_cols=31 Identities=23% Similarity=0.500 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..|+|.|+|||||||+++.+++.++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999876654
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00086 Score=60.58 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=31.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
++..+.|.|++|+||||+++.++..+ |.+++.++...
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~ 43 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 43 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChH
Confidence 34678899999999999999999988 88998887543
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0006 Score=63.92 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|+|.||||+||||+++.+++.++.+++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 4579999999999999999999999975543
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=67.31 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=44.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec-cchhh---------hhccchHHHHHHHHHHHHhcCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA-SSVVS---------KWRGDSEKLIKVLFELARHHAPSTIFL 307 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~-s~l~~---------~~~g~~~~~l~~lf~~A~~~~p~VL~I 307 (489)
...+++.||+|+||||+.++++..+ +..++.+.- .++.. ...+.........+..+....|.+|++
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill 202 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV 202 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence 3568999999999999999998876 344443321 11110 001111112344667777789999999
Q ss_pred chhh
Q 011305 308 DEID 311 (489)
Q Consensus 308 DEiD 311 (489)
||.-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9993
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.004 Score=56.10 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.4
Q ss_pred CCceEEEEcCCCCcHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAra 261 (489)
++.-+.|.||+|+||||+++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 456789999999999999994
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0022 Score=61.09 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~ 279 (489)
..++++||+|+|||.++.+++...+.+++.+... ++.
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~ 146 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHH
Confidence 3599999999999999999999887777666544 443
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00092 Score=62.71 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.++|.||||+||+|.|+.|++.++.+. ++..++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHH
Confidence 478999999999999999999998765 5555554
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0011 Score=61.14 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
.++..+.|.||+|+||||+++.++..+ |...+.++..++
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678999999999999999999988 554456665443
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.001 Score=60.99 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh-CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC-KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el-~~~~i~v~ 274 (489)
+..|.|.|++|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4679999999999999999999998 57777665
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00097 Score=63.68 Aligned_cols=31 Identities=23% Similarity=0.514 Sum_probs=27.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+..+.|.||+|+||||+++.+++.+|...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3567999999999999999999999987544
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00076 Score=61.00 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK---TTFFNISASS 277 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~ 277 (489)
.|+|.|+||+||||+++.+++.++ .++..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 589999999999999999999885 3355555433
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0017 Score=63.06 Aligned_cols=71 Identities=23% Similarity=0.347 Sum_probs=43.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccch--h-h--------hhccchHHHHHHHHHHHHhcCCcE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV--V-S--------KWRGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l--~-~--------~~~g~~~~~l~~lf~~A~~~~p~V 304 (489)
.++..++|.||+|+||||++++++..+ ...++... ..+ . . ..+|.....++..+..+-...|.+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g-~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~i 101 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIE-DPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDV 101 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEE-SSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSE
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcC-CcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCE
Confidence 345678999999999999999999865 23332221 111 0 0 000101112345566666678999
Q ss_pred EEEchhh
Q 011305 305 IFLDEID 311 (489)
Q Consensus 305 L~IDEiD 311 (489)
|++||.-
T Consensus 102 lllDEp~ 108 (261)
T 2eyu_A 102 IFVGEMR 108 (261)
T ss_dssp EEESCCC
T ss_pred EEeCCCC
Confidence 9999993
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0012 Score=59.84 Aligned_cols=31 Identities=26% Similarity=0.074 Sum_probs=27.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.+.|.|++||||||+++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999988 88887664
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0011 Score=61.79 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++|.|+||+||||+++.+++.++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999877654
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=61.08 Aligned_cols=24 Identities=42% Similarity=0.696 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.|+|.||+|+|||||++.+.++.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998876
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0089 Score=62.55 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=30.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... |.++++++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 35666779999999999999999998854 557777764
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0011 Score=60.53 Aligned_cols=29 Identities=24% Similarity=0.547 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+.|.|++|+||||+++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0014 Score=61.13 Aligned_cols=29 Identities=34% Similarity=0.474 Sum_probs=26.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
..+.|.||+||||||+++.+++.++.+++
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999997665
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=61.89 Aligned_cols=29 Identities=31% Similarity=0.588 Sum_probs=25.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.++|.|+||+||||+++.+++.++.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~ 30 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIE 30 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 47899999999999999999999876543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00092 Score=66.66 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=31.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
++-++|.||+|+|||+|+..+|+.++..++..+...+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 3568899999999999999999999988777665443
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.012 Score=61.40 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=30.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 35666779999999999999999998754 567777765
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.03 Score=64.30 Aligned_cols=44 Identities=27% Similarity=0.266 Sum_probs=35.5
Q ss_pred ccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 211 liG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+|.+..++.|.+.+... ...+-+.|+|+.|+|||+||+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 399999999998877431 12367899999999999999999863
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=60.74 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+.|.|++||||||+++.+++ +|.+++..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 588999999999999999999 88766654
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0017 Score=59.60 Aligned_cols=28 Identities=21% Similarity=0.095 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
+.-|+|.|+|||||||+++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3568999999999999999999998763
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0019 Score=59.21 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.+.|.|++||||||+++.+++.++.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 688999999999999999999999877654
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0031 Score=60.04 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
..+++.|+||+|||+++-.+|..+ |..++.++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 469999999999999999998876 666665554
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0022 Score=62.04 Aligned_cols=32 Identities=34% Similarity=0.512 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..+.|.|++|+||||+++.+|..++.+++..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 46799999999999999999999999887754
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00085 Score=61.97 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
+..|+|.|++||||||+++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4679999999999999999999987544
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0024 Score=61.15 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..+.|.||+|+||||+++.+++.++.+++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3578999999999999999999999976643
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0031 Score=60.48 Aligned_cols=38 Identities=16% Similarity=0.060 Sum_probs=31.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc--------EEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT--------FFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~--------~i~v~~s~l~ 279 (489)
+..|.|.|++||||||+++.+++.++.+ +..++..++.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3568999999999999999999999876 3466766654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0028 Score=57.54 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
++..++|.|++|+||||+++.++..+ +.++..++...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 45678999999999999999999987 44555665443
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0024 Score=58.32 Aligned_cols=31 Identities=19% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+..|.|.|++||||||+++.+++. |.+++.
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 3467899999999999999999998 776654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0029 Score=64.73 Aligned_cols=72 Identities=22% Similarity=0.326 Sum_probs=44.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEecc-chh-hh---hc-----cchHHHHHHHHHHHHhcCCcEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISAS-SVV-SK---WR-----GDSEKLIKVLFELARHHAPSTI 305 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s-~l~-~~---~~-----g~~~~~l~~lf~~A~~~~p~VL 305 (489)
.++..++|.||+|+||||++++++..+. ..++.+... ++. .. ++ |.....+...+..+....|.+|
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 213 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEE
Confidence 3456799999999999999999998652 344333211 110 00 01 0011122445556666789999
Q ss_pred EEchhh
Q 011305 306 FLDEID 311 (489)
Q Consensus 306 ~IDEiD 311 (489)
++||+-
T Consensus 214 lldE~~ 219 (372)
T 2ewv_A 214 FVGEMR 219 (372)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999993
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.002 Score=59.60 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=25.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++..++|.||||+||||+++.++..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45567899999999999999999999884
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.024 Score=56.29 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=30.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 35666779999999999999999998765 467777764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0011 Score=61.30 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+..|+|.|++||||||+++.+++.++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999874
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.002 Score=59.63 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+.|+|++||||||+++.+++.+|.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid 42 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVN 42 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999999998987764
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=65.24 Aligned_cols=34 Identities=29% Similarity=0.381 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++.++|.||+|||||+|+..||+.++.+++..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 3578999999999999999999999988776554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0022 Score=59.13 Aligned_cols=29 Identities=24% Similarity=0.271 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..+.|.||+||||||+++.++. +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 3578999999999999999988 7877653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0033 Score=60.41 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
++..+.|.||+|+||||+++.+++.+|.+++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 3456889999999999999999999998655
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.016 Score=57.16 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEecc
Q 011305 215 ENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISAS 276 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s 276 (489)
+.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 34555666555543322111 1112345679999999999999999999765 5566666653
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.026 Score=51.61 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+++++.+|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999998887654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0038 Score=59.13 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=28.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
...+..+.|.|++|+||||+++.++..+|.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3455679999999999999999999999987653
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0038 Score=58.10 Aligned_cols=31 Identities=26% Similarity=0.285 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+..|.|.|++||||||+++.++. +|.+++..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 35689999999999999999998 88766543
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=96.22 E-value=0.015 Score=66.03 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~ 264 (489)
.++..++|.||.|+||||+.|.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3456789999999999999999875
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0032 Score=58.52 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~l 278 (489)
++..++|.|++|+||||+++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 456789999999999999999999764 56777775443
|
| >3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.00054 Score=55.16 Aligned_cols=72 Identities=11% Similarity=0.101 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhhhhhhhhhcccc---CCCc--eeeeccCCCcccceeeEEEeccccchhhh----hhHHHHHHHHHHHHH
Q 011305 15 RALTKCLKEGIITSRFIISKFII---GPPH--AFFYSFGSPPFQFSLAIQLAGCCSVETER----ERFFFFLIFILSAIS 85 (489)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 85 (489)
..+..||+.+|.+++-+|.-|+. |.++ +-+|..|+.+...|++|.+.|-|..-++. +||..+|..+..||.
T Consensus 7 ~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ~KM~~nL~~v~~RL~ 86 (89)
T 3eab_A 7 ERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQAKMMTNLVMAKDRLQ 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999 9898 66899999999999999999966554443 349999999999985
Q ss_pred H
Q 011305 86 L 86 (489)
Q Consensus 86 ~ 86 (489)
.
T Consensus 87 ~ 87 (89)
T 3eab_A 87 L 87 (89)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.11 E-value=0.0026 Score=58.75 Aligned_cols=32 Identities=28% Similarity=0.223 Sum_probs=26.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh-CCcEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC-KTTFF 271 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el-~~~~i 271 (489)
.++.-+.|.|++|+||||+++.++..+ +.+++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 444668899999999999999999987 55444
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.034 Score=50.64 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHH-HHHH
Q 011305 243 KGILLFGPPGTGKTMLAKA-VATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAra-lA~e 265 (489)
+++++.+|+|+|||..+-. +...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 6799999999999987433 3343
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0029 Score=63.58 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccc-hh----hh---hccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VV----SK---WRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~-l~----~~---~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
+..++|.||+|+||||++++++.... ...+.+.... +. .. +..+.....+..+..|....|.+|++||.-
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~ 250 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELR 250 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCC
Confidence 46799999999999999999999773 2344454321 11 00 110011233445666667889999999985
Q ss_pred h
Q 011305 312 A 312 (489)
Q Consensus 312 ~ 312 (489)
.
T Consensus 251 ~ 251 (330)
T 2pt7_A 251 S 251 (330)
T ss_dssp S
T ss_pred h
Confidence 3
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0045 Score=57.55 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..+.|.|++|||||++++.+++.+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999999876543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0033 Score=57.57 Aligned_cols=26 Identities=31% Similarity=0.377 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++..+.|.||+|+||||+++.++..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45678999999999999999999876
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0073 Score=62.54 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+.-|+|.|+||+||||+|+.+++.++..+ ++..++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 346688999999999999999999987654 444443
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0043 Score=56.26 Aligned_cols=26 Identities=23% Similarity=0.487 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.-+.|.||+|+||||+++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998763
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0039 Score=57.98 Aligned_cols=27 Identities=33% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
++.-+.|.||+|+||||+++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456789999999999999999999874
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=95.96 E-value=0.057 Score=57.11 Aligned_cols=28 Identities=29% Similarity=0.226 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3455678999999999999999999876
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.033 Score=55.81 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 455678999999999999999999876
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0043 Score=60.71 Aligned_cols=29 Identities=31% Similarity=0.377 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-CCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-KTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-~~~~i 271 (489)
.-++|.|+||+||||+++.+++.+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 568999999999999999999974 54444
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0049 Score=61.53 Aligned_cols=89 Identities=11% Similarity=0.153 Sum_probs=49.3
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCC-cHHHHHHHHHHHHhH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGY-SGSDIRLVSKEAAMQ 426 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~-sg~Di~~l~~~A~~~ 426 (489)
+++|+-....+.|...+-.|++..+.-++.+ |-..++...-...+.-..+-+.++.....|- +-.+....++.+...
T Consensus 192 ~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~e--Ev~~L~~~~~~~~~a~~aIGYkE~~~yL~G~~sl~eaie~i~~~TR~ 269 (322)
T 3exa_A 192 LVMIGLTMERDVLYDRINRRVDQMVEEGLID--EAKKLYDRGIRDCQSVQAIGYKEMYDYLDGNVTLEEAIDTLKRNSRR 269 (322)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHTTCCSSTGGGSTTTHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHhcCCCcCccceeeeHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 4445544444567778878888777666543 3444555431111122345566677666653 445555555555555
Q ss_pred HHHHHHHHhhhh
Q 011305 427 PLRRLMVLLEGR 438 (489)
Q Consensus 427 a~rR~~~~le~~ 438 (489)
-++|-++.....
T Consensus 270 yAKRQ~TWfR~~ 281 (322)
T 3exa_A 270 YAKRQLTWFRNK 281 (322)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHhcCC
Confidence 566656666544
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0055 Score=55.62 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
..++|.||+|+||||+++.++...+.. +.++..+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d~ 36 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGDI 36 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCe-EEEcccc
Confidence 357899999999999999999866542 3444433
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.018 Score=53.49 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=42.1
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHHh--CCcEEEEeccchhhhhccchHH------------HHHHHHHHHHhcCCcEEE
Q 011305 242 WKGILLFGPPGTGKT-MLAKAVATEC--KTTFFNISASSVVSKWRGDSEK------------LIKVLFELARHHAPSTIF 306 (489)
Q Consensus 242 ~~~vLL~GppGtGKT-~lAralA~el--~~~~i~v~~s~l~~~~~g~~~~------------~l~~lf~~A~~~~p~VL~ 306 (489)
.+-.+++||.|+||| .|.+++.+.. +..++.++.. +-..+...... ....++...+ ...+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhcc--CCCEEE
Confidence 355788999999999 8999987754 6777777643 11111100000 0112233222 347999
Q ss_pred EchhhhH
Q 011305 307 LDEIDAI 313 (489)
Q Consensus 307 IDEiD~l 313 (489)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999877
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=95.89 E-value=0.066 Score=49.50 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHHHH-HHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA-KAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA-ralA~e 265 (489)
.+++++.+|+|+|||..+ -.+...
T Consensus 51 ~~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 51 GHDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHH
Confidence 367999999999999873 333433
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=95.88 E-value=0.044 Score=57.87 Aligned_cols=38 Identities=8% Similarity=-0.113 Sum_probs=31.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 35666779999999999999999998865 457777765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.028 Score=63.98 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+.-++|.||.|+||||+.|.++.
T Consensus 662 g~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34589999999999999999954
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.041 Score=54.96 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
..++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3456779999999999999999999866 566666654
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0061 Score=59.65 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=25.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
+..|.|.|++||||||+++.++ .+|.+++.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id 104 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIID 104 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence 3568999999999999999999 67876544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0055 Score=56.05 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
++.-+.|.||+|+||||+++.++....
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999999863
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0046 Score=62.42 Aligned_cols=89 Identities=13% Similarity=0.121 Sum_probs=48.8
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC-CcHHHHHHHHHHHHhH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG-YSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G-~sg~Di~~l~~~A~~~ 426 (489)
+++|+-.-..+.|...+-.|++..+.-++.+ |-..++...+...+.-..+-+.++.....| .+-.+....++.+...
T Consensus 198 ~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~--Ev~~L~~~~~~~~~~~~aIGyke~~~yl~g~~~~~ea~~~~~~~Tr~ 275 (340)
T 3d3q_A 198 TLLIGIEMSRETLYLRINKRVDIMLGHGLFN--EVQHLVEQGFEASQSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQ 275 (340)
T ss_dssp EEEEEEECCHHHHHHHHHHHHHHHHHHTHHH--HHHHHHHTTCTTSSGGGSTTTTTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHHHCCHHH--HHHHHHHcCCCcchhhhhccHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4455555455667788888888777766543 344455443212222233445555555554 3555555555555555
Q ss_pred HHHHHHHHhhhh
Q 011305 427 PLRRLMVLLEGR 438 (489)
Q Consensus 427 a~rR~~~~le~~ 438 (489)
-++|-+......
T Consensus 276 yAKRQ~TWfr~~ 287 (340)
T 3d3q_A 276 YAKRQLTWFKNK 287 (340)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC
Confidence 566656665544
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.025 Score=58.65 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEecc-chhhh------hccchHHHHHHHHHHHHhcCCcEEEEchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNISAS-SVVSK------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s-~l~~~------~~g~~~~~l~~lf~~A~~~~p~VL~IDEi 310 (489)
...++|.||+|+||||+.++++..+. ..++.+.-. ++.-. ............+..+....|.++++.|+
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 34689999999999999999999874 334433211 11000 00001011223344445567899999885
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.018 Score=52.96 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++.-+.|.|++|+||||+++.++..+ +.+++.++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34568899999999999999999876 6666665443
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.1 Score=48.10 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.+|+|+|||..+-..+-+.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 679999999999998776655544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.045 Score=51.57 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=18.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+..+++.||+|||||++...+.-
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCcHHhHHHHHh
Confidence 36799999999999987766543
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.02 Score=61.15 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
+.-|+|.|.||+||||+++.+++.+ +.+...++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 3568999999999999999999988 455555665544
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.049 Score=56.89 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=31.3
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++.++.-++|.|+||+|||+++..+|... |.++++++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 35666779999999999999999998765 677877765
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0049 Score=57.57 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
.+++++|.||+|+|||++|..+++... +++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 347899999999999999999999876 6555443
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0066 Score=56.43 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..|.|.|++|||||++++.+|+.+|.+|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 358899999999999999999999999884
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0065 Score=56.06 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++..+.|.||+|+||||+++.++..++..+..++.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~ 39 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLPM 39 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 34568899999999999999999988722333443
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.70 E-value=0.055 Score=53.38 Aligned_cols=71 Identities=23% Similarity=0.083 Sum_probs=46.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh------------c-cchHHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW------------R-GDSEKLIKVLFELAR 298 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~------------~-g~~~~~l~~lf~~A~ 298 (489)
+..+++.|++|+||||++..+|..+ +..+..+++.-... .+ . ......+...+..++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999999876 66666666531100 00 0 122333445666665
Q ss_pred hcCCcEEEEchhhh
Q 011305 299 HHAPSTIFLDEIDA 312 (489)
Q Consensus 299 ~~~p~VL~IDEiD~ 312 (489)
.....+++||=.-.
T Consensus 178 ~~~~D~ViIDTpg~ 191 (297)
T 1j8m_F 178 SEKMEIIIVDTAGR 191 (297)
T ss_dssp HTTCSEEEEECCCS
T ss_pred hCCCCEEEEeCCCC
Confidence 45668999997533
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=95.68 E-value=0.043 Score=58.23 Aligned_cols=35 Identities=26% Similarity=0.202 Sum_probs=28.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++..|+|.|++|+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999766 666666665
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0058 Score=56.41 Aligned_cols=27 Identities=33% Similarity=0.502 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+++.+.|.||+|+||||+++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 446799999999999999999998763
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=95.64 E-value=0.083 Score=54.95 Aligned_cols=36 Identities=33% Similarity=0.252 Sum_probs=29.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++..+++.|++|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 34679999999999999999999876 4666666654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0069 Score=56.13 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.++..+.|.||+|+|||||++.++..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3456788999999999999999999874
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0073 Score=62.28 Aligned_cols=33 Identities=27% Similarity=0.375 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
.+-++|.||+|+|||+++..+|+.++..++..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 356889999999999999999999987766543
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.018 Score=53.19 Aligned_cols=33 Identities=15% Similarity=0.019 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.+-.+++||.|+|||+.+-.++..+ +..++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3567899999999999998888876 66665553
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.044 Score=58.31 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=50.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------------h----c--cchH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------------W----R--GDSE 287 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------------~----~--g~~~ 287 (489)
..++..++|.||+|+|||+|++.++... |.+.+++...+-... + . -...
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g 357 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLE 357 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHH
Confidence 4556779999999999999999999765 445555543221100 0 0 0123
Q ss_pred HHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 288 KLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 288 ~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
...+.++..+....|.+|+||=+..+..
T Consensus 358 ~~q~~~~a~~l~~~p~llilDp~~~Ld~ 385 (525)
T 1tf7_A 358 DHLQIIKSEINDFKPARIAIDSLSALAR 385 (525)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECHHHHTS
T ss_pred HHHHHHHHHHHhhCCCEEEEcChHHHHh
Confidence 4455566677778899999996555543
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0082 Score=63.98 Aligned_cols=70 Identities=20% Similarity=0.292 Sum_probs=44.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccc-hhhh---h--------ccchHHHHHHHHHHHHhcCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISASS-VVSK---W--------RGDSEKLIKVLFELARHHAPSTIF 306 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s~-l~~~---~--------~g~~~~~l~~lf~~A~~~~p~VL~ 306 (489)
.+.+++|.||+|+||||++++++..+. ...+.+.... +... + .+.....+..+...+....|.+++
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~ii 338 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYII 338 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEE
Confidence 346799999999999999999998773 3455554322 2100 0 001111233344555567899999
Q ss_pred Echh
Q 011305 307 LDEI 310 (489)
Q Consensus 307 IDEi 310 (489)
+.|+
T Consensus 339 vgEi 342 (511)
T 2oap_1 339 VGEV 342 (511)
T ss_dssp ESCC
T ss_pred eCCc
Confidence 9987
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.088 Score=51.79 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=46.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------h---------h---c-cchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------K---------W---R-GDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~---------~---~-g~~~~~l~~lf~~A 297 (489)
++..+.+.|++|+||||++..+|..+ +..+..+++.-... . + . .......+..+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999999866 55665555421000 0 0 0 01223334556666
Q ss_pred HhcCCcEEEEchhhh
Q 011305 298 RHHAPSTIFLDEIDA 312 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~ 312 (489)
....+.+|+||+.-.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 556679999999833
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=95.34 E-value=0.049 Score=60.85 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=19.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...+++.||+|+|||+++..+...
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999987777554
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.076 Score=57.96 Aligned_cols=49 Identities=22% Similarity=0.263 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 214 LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 214 ~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+..++.+..++.. ..-.|++||||||||+++-.+..++ +.+++.+..+
T Consensus 191 N~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 191 DTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 45666666665532 1247999999999998766555544 5555555543
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.014 Score=63.65 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=32.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
.+..|+|.|.||+||||+++++++.+ |.+++.++...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~ 90 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDN 90 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHH
Confidence 34669999999999999999999999 99999887543
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.067 Score=48.66 Aligned_cols=18 Identities=33% Similarity=0.313 Sum_probs=15.7
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 689999999999997654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.049 Score=57.98 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHH--HHHh--CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAV--ATEC--KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAral--A~el--~~~~i~v~~s 276 (489)
.++..++|.||+|+|||||++.+ +... +..-++++..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 45678999999999999999994 4433 3445556543
|
| >1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A | Back alignment and structure |
|---|
Probab=95.24 E-value=0.01 Score=54.38 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+|++|++|||||++|+.++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887654
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.22 E-value=0.023 Score=56.24 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHccccCch---hhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 215 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.+.+.+...+.... ...--..++..+.|.||+|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4566666665554442221 111013455678999999999999999999876
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.012 Score=54.81 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+++-+.|.||+|+|||||++.++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 346688999999999999999998764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=95.17 E-value=0.015 Score=55.10 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=26.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK--TTFFN 272 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~--~~~i~ 272 (489)
.+.-+.|.||+|+||||+++.+++.++ .+++.
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 446688999999999999999999986 45543
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.11 Score=53.88 Aligned_cols=70 Identities=23% Similarity=0.199 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-------hh---------c----cchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-------KW---------R----GDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-------~~---------~----g~~~~~l~~lf~~A 297 (489)
++..+++.|++|+||||++..+|..+ +..+..+++.-... .+ . ..........+..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 55678899999999999999999876 55666665421110 00 0 01123335556666
Q ss_pred HhcCCcEEEEchh
Q 011305 298 RHHAPSTIFLDEI 310 (489)
Q Consensus 298 ~~~~p~VL~IDEi 310 (489)
+.....+++||=.
T Consensus 177 ~~~~~DvVIIDTa 189 (425)
T 2ffh_A 177 RLEARDLILVDTA 189 (425)
T ss_dssp HHTTCSEEEEECC
T ss_pred HHCCCCEEEEcCC
Confidence 5455679999854
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0058 Score=56.33 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-|.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.012 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+||||+++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3455678999999999999999999976
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.013 Score=54.15 Aligned_cols=28 Identities=18% Similarity=0.376 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.++.-+.|.||+|+||||+++.++..+.
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4456788999999999999999999874
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.072 Score=59.73 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
++..++|.||.|+||||+.|.++..
T Consensus 606 ~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 606 QRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCChHHHHHHHHHH
Confidence 4456899999999999999999874
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=95.11 E-value=0.015 Score=51.96 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++..+.|.||.|+|||||++.++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 445678899999999999999999987
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.06 Score=56.04 Aligned_cols=71 Identities=17% Similarity=0.189 Sum_probs=47.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhh----------------c----cchHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKW----------------R----GDSEKLIKVLFE 295 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~----------------~----g~~~~~l~~lf~ 295 (489)
.+++.+++.|++|+||||++-.+|..+ |..+..+++.-..... . ......+...+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788999999999999999998765 6777777765321100 0 012333355566
Q ss_pred HHHhcCCcEEEEchh
Q 011305 296 LARHHAPSTIFLDEI 310 (489)
Q Consensus 296 ~A~~~~p~VL~IDEi 310 (489)
.++.....+++||=.
T Consensus 178 ~~~~~~~D~VIIDTp 192 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTA 192 (433)
T ss_dssp HHHHTTCSEEEEECC
T ss_pred HHHhCCCCEEEEECC
Confidence 665455689999875
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.04 E-value=0.014 Score=54.99 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+++.-+.|.||+|+|||||++.++....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34556789999999999999999999764
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.016 Score=54.97 Aligned_cols=30 Identities=23% Similarity=0.334 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..|.|.|++|||||++++.+|+.+|.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 467899999999999999999999999864
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=57.84 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK---TTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~s~l 278 (489)
.-|.|.||+|+||||+++.+++.++ ..+..+++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 4588999999999999999999875 44556666554
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.017 Score=55.08 Aligned_cols=34 Identities=24% Similarity=0.458 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+-|.||||+||||+++.+++.++.+.+ +..++.
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~i--s~gdll 43 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQI--STGDML 43 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEE--CHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCee--echHHH
Confidence 4678999999999999999999998765 444443
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=94.90 E-value=0.025 Score=55.19 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
+.++.-++|.||||+|||++++.++..+ |.+++.++.
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4556779999999999999999998865 446665543
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=94.86 E-value=0.018 Score=54.76 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=25.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++.-+-|.||+|+||||+++.++..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 344568899999999999999999988754
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.033 Score=56.57 Aligned_cols=52 Identities=23% Similarity=0.175 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHccccCch---hhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 215 ENAKRLLKEAVVMPIKYPK---YFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 215 e~~k~~L~e~v~~~l~~~~---~~~~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.+.+.+...+.... ...--..++..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4566666665554443221 111013456778999999999999999999976
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=94.85 E-value=0.0032 Score=65.88 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCCccCCCcEEEEEE-eCCCCcccHHHHh--hcccccccCCCCHH-HHHHHH
Q 011305 326 ASRRLKTELLIQMDGLTQSDELVFVLAA-TNLPWELDAAMLR--RLEKRILVPLPDTE-ARRAMF 386 (489)
Q Consensus 326 ~~~~i~~~LL~~ldg~~~~~~~viVIat-Tn~p~~Ld~al~r--Rf~~~i~~~~Pd~~-eR~~IL 386 (489)
..+++++.|+..||++..... + +++ ||+|+.+|+++++ ||++.|++++|+.. .|.+|+
T Consensus 127 ~e~rvl~~LL~~~dg~~~~~~-v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 127 AEERILDALLPPAKNQWGEVE-N--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhhccccccc-c--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 346788899999998865433 2 455 9999999999998 99999999999987 677775
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.14 Score=48.06 Aligned_cols=17 Identities=35% Similarity=0.640 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHH
Q 011305 243 KGILLFGPPGTGKTMLA 259 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lA 259 (489)
+.+++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 67999999999999864
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.048 Score=51.29 Aligned_cols=33 Identities=12% Similarity=-0.046 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.-.+++||.|+|||+.+-.++..+ +..++.+..
T Consensus 29 ~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 29 WIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 445689999999999998887765 666666653
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=94.75 E-value=0.019 Score=57.04 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=27.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
.+++..+.|.||+|+|||||++.|+..+...+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 46667899999999999999999999874444
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=94.67 E-value=0.072 Score=55.81 Aligned_cols=33 Identities=21% Similarity=0.271 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK---TTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~ 274 (489)
+..|+|.|.||+||||+++.+++.++ .+...++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~ 74 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 74 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEe
Confidence 45799999999999999999999874 4444544
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.18 Score=46.91 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.7
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
++++++.+|+|+|||..+
T Consensus 61 ~~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 61 GLDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCcHHHHH
Confidence 468999999999999874
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=94.63 E-value=0.1 Score=51.44 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+++++.+|+|+|||..+-..+.+.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 689999999999999876655443
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.57 E-value=0.15 Score=47.65 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=30.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcc----cCCCCceEEEEcCCCCcHHHHHH
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTG----LLSPWKGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~----~~~~~~~vLL~GppGtGKT~lAr 260 (489)
.+|+++.-.+.+.+.|.+.- ...+..... .....+.+++.+|+|+|||..+-
T Consensus 25 ~~f~~~~l~~~l~~~l~~~~---~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 25 TRFSDFPLSKKTLKGLQEAQ---YRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp SBGGGSCCCHHHHHHHHHTT---CCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHCC---CCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 45777766666666665421 111111111 11234689999999999998643
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.022 Score=61.56 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=31.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~ 277 (489)
.+..|+|.|++|+||||+|+++++.++ .+++.++...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 345689999999999999999999986 7788887544
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=94.42 E-value=0.016 Score=54.53 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=17.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHH-HHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVA-TEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA-~el 266 (489)
.++.-+.|.||+|+||||+++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345668899999999999999999 765
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.086 Score=52.64 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.-+-|.||+|+||||+++.++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45688999999999999999999875
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=94.37 E-value=0.048 Score=53.60 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=23.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+.-|.|.||+|+||||+++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999999875
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.49 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=18.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
.+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 45 GMDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp TCCEEEECSSCSSHHHHHHHHHHH
T ss_pred CCcEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999876554443
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=94.31 E-value=0.095 Score=52.79 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=26.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
...|.|.|+||+||||++..++..+ |..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3578999999999999999999876 55544443
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=94.24 E-value=0.033 Score=52.63 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=23.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+.-+.|.|++|+||||+++.+++.++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999999984
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.23 E-value=0.13 Score=55.54 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+++..+.|.||+|+||||+++.++...
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 4666789999999999999999999865
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.051 Score=49.22 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
..+.|.|++|+||||++..++..+ +..+..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 468899999999999999999876 45555554
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=94.20 E-value=0.15 Score=47.99 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=16.2
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAra 261 (489)
+.+++.+|+|+|||...-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 6899999999999987543
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.19 E-value=0.027 Score=51.43 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
.+.++||.|++|+|||++|.++.+. |..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 3579999999999999999999874 4443
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=94.17 E-value=0.028 Score=51.70 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.+.|.||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999876
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.034 Score=59.76 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=30.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC----CcEEEEeccch
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK----TTFFNISASSV 278 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~----~~~i~v~~s~l 278 (489)
++..+.|.|++|+||||++++|+..++ ..+..++...+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 446789999999999999999999884 34555666544
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=94.14 E-value=0.032 Score=55.48 Aligned_cols=27 Identities=19% Similarity=0.041 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+||||+++.|+..+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 445668899999999999999999977
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.3 Score=51.04 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=24.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~ 275 (489)
+++++.+|+|+|||..+-..+.+. +..++.+.+
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 60 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFAN 60 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeC
Confidence 679999999999999877666544 455555544
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=94.12 E-value=0.051 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.082 Sum_probs=23.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+.-+-|.||+|+||||+++.++..++
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 345688999999999999999999775
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=94.07 E-value=0.015 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=23.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.+.-|.|.|++|+||||+++.+++.++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346789999999999999999999983
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.96 E-value=0.11 Score=61.47 Aligned_cols=28 Identities=18% Similarity=0.331 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+++..+.|.||+|+||||+++.+...+
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 3566779999999999999999999876
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.057 Score=50.58 Aligned_cols=32 Identities=22% Similarity=0.127 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNI 273 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v 273 (489)
+.-|.|.|++|+||||+++.+++.+ +.+++..
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 3568899999999999999999988 4555544
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.16 Score=50.97 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=23.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..+..+.|.||||+||||+.+.++..+
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344668899999999999999999765
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.29 Score=45.24 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAra 261 (489)
.+.+++.+|+|+|||..+-.
T Consensus 57 ~~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 57 GIDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp TCCEEEECCTTSCHHHHHHH
T ss_pred CCCEEEECCCCChHHHHHHH
Confidence 36799999999999986543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.23 Score=57.20 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
+..++|+||.|+||||+.|.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 46789999999999999999943
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=93.80 E-value=0.038 Score=54.72 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 35678899999999999999999876
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.071 Score=47.74 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
....+++.|++|+|||+++..+....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999998753
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=93.74 E-value=0.03 Score=53.31 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999765
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=93.73 E-value=0.19 Score=56.02 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
+..++|.||.|+||||+.|.++..
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 456889999999999999999864
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=93.71 E-value=0.16 Score=50.48 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=17.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVA 263 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA 263 (489)
++++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 4789999999999998765443
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=93.69 E-value=0.14 Score=52.55 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=23.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++..++|.||+|+|||++++.+++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 345679999999999999999999865
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.032 Score=53.14 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566779999999999999999999865
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.074 Score=50.04 Aligned_cols=30 Identities=27% Similarity=0.166 Sum_probs=26.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+.-|.|.|++|+||||+++.+++.++.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 467889999999999999999999986443
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.48 E-value=0.066 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.135 Sum_probs=20.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+.-|.|.|++|+||||+++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999987
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=93.45 E-value=0.043 Score=49.11 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-.+|+||.|+|||+++++|+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999998775
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=93.44 E-value=0.16 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.268 Sum_probs=17.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
+++++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5799999999999987654443
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=93.41 E-value=0.067 Score=58.19 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..++++||||||||+++..+...+
T Consensus 196 ~~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 196 PLSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999888776654
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.38 E-value=0.044 Score=57.56 Aligned_cols=25 Identities=36% Similarity=0.473 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+..++|+||+|+|||+|+..++...
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhh
Confidence 3568999999999999999988764
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=93.37 E-value=0.055 Score=49.11 Aligned_cols=24 Identities=29% Similarity=0.254 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-+.|.|++|+||||+++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 568899999999999999999875
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=93.32 E-value=0.037 Score=52.16 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678899999999999999999765
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.067 Score=55.52 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=29.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc-chh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS-SVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s-~l~ 279 (489)
..+++.+|+|+|||.++-.++...+.+.+.+-.. ++.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~ 146 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALA 146 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHH
Confidence 4599999999999999998888888777766554 443
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.086 Score=53.05 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=30.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.++.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4566779999999999999999998864 677777765
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.28 E-value=0.038 Score=52.71 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||.+.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.045 Score=58.18 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
+..|+|.|.+||||||+++++|+.++.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999999999974
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.16 E-value=0.041 Score=53.23 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||++.++...
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678899999999999999999865
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=93.13 E-value=0.25 Score=49.87 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=18.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
.+++++.+|+|+|||..+-..+-
T Consensus 74 ~~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 74 GRDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp TCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCchHHHHHHHH
Confidence 36799999999999977654443
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=93.12 E-value=0.17 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=17.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+++++.+|+|+|||..+-..+..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 68999999999999955444333
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.058 Score=50.58 Aligned_cols=31 Identities=29% Similarity=0.341 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
-.|-|+|..||||||+++.+++ +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4588999999999999999988 888876443
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.059 Score=51.41 Aligned_cols=25 Identities=28% Similarity=0.297 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.-|.|.|++|+||||+++.+++.+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999987
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.044 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.323 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4566779999999999999999999765
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=93.03 E-value=0.27 Score=49.18 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=22.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
....+.|.|+||+||||++..++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34678899999999999999998765
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=93.03 E-value=0.052 Score=52.65 Aligned_cols=27 Identities=30% Similarity=0.556 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++..+.|.||.|+|||||++.++..
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 455667899999999999999999975
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.039 Score=55.94 Aligned_cols=72 Identities=22% Similarity=0.266 Sum_probs=44.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEEecc-chhhh-------hcc-c-------hHHHHHHHHHHHHhcC
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK--TTFFNISAS-SVVSK-------WRG-D-------SEKLIKVLFELARHHA 301 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~--~~~i~v~~s-~l~~~-------~~g-~-------~~~~l~~lf~~A~~~~ 301 (489)
.++..++|.||+|+||||++++++.... ...+.+... ++... ++- + ....++..+..+....
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~ 252 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMK 252 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSC
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcC
Confidence 3456899999999999999999999763 234444421 11100 111 0 1112345555666677
Q ss_pred CcEEEEchhh
Q 011305 302 PSTIFLDEID 311 (489)
Q Consensus 302 p~VL~IDEiD 311 (489)
|.+++++|+.
T Consensus 253 pd~~l~~e~r 262 (361)
T 2gza_A 253 PTRILLAELR 262 (361)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEEcCch
Confidence 8899999984
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.048 Score=50.89 Aligned_cols=24 Identities=42% Similarity=0.545 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
+..+.|.||.|+|||||++.++..
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999975
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.051 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..+ ..+.|.||.|+|||||.+.++...
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 678899999999999999999865
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=92.97 E-value=0.19 Score=55.30 Aligned_cols=33 Identities=27% Similarity=0.304 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHH-HHHHHh---CCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAK-AVATEC---KTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAr-alA~el---~~~~i~v~ 274 (489)
..++++.||+|+|||+.+. .+.+.+ +...+.+.
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~ 75 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIV 75 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 5789999999999999883 333222 45555554
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.047 Score=53.11 Aligned_cols=28 Identities=36% Similarity=0.494 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++..+
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4566778999999999999999999865
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.51 Score=45.04 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.1
Q ss_pred ceEEEEcCCCCcHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKA 261 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAra 261 (489)
+.+++.+|+|+|||..+-.
T Consensus 92 ~~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCCEECCCTTSCHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHH
Confidence 6799999999999987543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=92.88 E-value=0.059 Score=51.65 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=23.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++..+.|.||.|+|||||++.++..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 345567889999999999999999975
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=92.84 E-value=0.042 Score=51.99 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++..+
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678999999999999999999865
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=0.54 Score=49.19 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~ 275 (489)
+++++.+|+|+|||..+-..+.+. +...+.+..
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P 63 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 63 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeC
Confidence 579999999999999876666544 455555544
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.042 Score=52.95 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.049 Score=52.81 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||++.++..+
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 4556678999999999999999999865
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.043 Score=52.63 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3455678999999999999999999865
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.05 Score=51.08 Aligned_cols=27 Identities=33% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||.|+|||||.+.++...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 455678899999999999999998765
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.067 Score=46.05 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999874
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.039 Score=49.92 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..+.|.|++|+||||+++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999773
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.052 Score=52.61 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 4556678899999999999999999855
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.044 Score=52.20 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.075 Score=48.72 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
...++|.|++|+|||+++..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999999864
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.056 Score=54.87 Aligned_cols=28 Identities=32% Similarity=0.485 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|||||||.+.|+...
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3555678899999999999999999865
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.052 Score=52.38 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4556678999999999999999999865
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.70 E-value=0.12 Score=49.65 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.062 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=21.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
++.|.||+|+|||||++.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999999865
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.66 E-value=0.091 Score=48.32 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5799999999999999999998863
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.063 Score=48.70 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+.|.|++|+|||+|++.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999985
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=92.64 E-value=0.081 Score=50.03 Aligned_cols=27 Identities=26% Similarity=0.160 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456888999999999999999997754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=92.63 E-value=0.046 Score=53.41 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||.|+|||||++.++...
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455678999999999999999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=92.62 E-value=0.066 Score=54.09 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
...+.|.||+|+|||||++.++..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4678999999999999999999987643
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=92.59 E-value=0.061 Score=48.67 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.+.|.|++|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=92.51 E-value=0.2 Score=51.77 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=17.8
Q ss_pred CceEEEEcCCCCcHHHHH-HHHH
Q 011305 242 WKGILLFGPPGTGKTMLA-KAVA 263 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA-ralA 263 (489)
.+.+|+.||+|+|||..+ -++.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 368999999999999986 4444
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.087 Score=56.49 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=29.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
+..++|.|++|+||||+++.+++.+ |.++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 3568999999999999999999987 456666665443
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.06 Score=52.21 Aligned_cols=28 Identities=21% Similarity=0.433 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3455678999999999999999999865
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=92.47 E-value=0.061 Score=51.67 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
..++..+.|.||.|+|||||.+.++..+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34556789999999999999999998653
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.74 Score=44.96 Aligned_cols=51 Identities=18% Similarity=0.195 Sum_probs=30.4
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhc-----ccC-CCCceEEEEcCCCCcHHHHH
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFT-----GLL-SPWKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~-----~~~-~~~~~vLL~GppGtGKT~lA 259 (489)
.+|+++.-...+.+.|... ....|.... ... .+++++++.+|+|||||...
T Consensus 92 ~~f~~l~l~~~l~~~l~~~---g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAM---GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHT---TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred CCHhhcCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 4677776666666666542 111121111 112 23578999999999999764
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=92.45 E-value=0.048 Score=56.85 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..+-.++.|+||||||+++..++..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCCT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhcc
Confidence 3356789999999999999888753
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.069 Score=54.22 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++.-.
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3455678899999999999999999865
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.40 E-value=0.42 Score=48.12 Aligned_cols=18 Identities=22% Similarity=0.363 Sum_probs=15.5
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
.+.+++.+|+|+|||..+
T Consensus 52 ~~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 52 KRDLMACAQTGSGKTAAF 69 (417)
T ss_dssp TCCEEEECCTTSCHHHHH
T ss_pred CCCEEEEcCCCCHHHHHH
Confidence 468999999999999743
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.069 Score=54.29 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++...
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3455678899999999999999999865
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.28 Score=49.30 Aligned_cols=21 Identities=24% Similarity=0.188 Sum_probs=16.9
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAV 262 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAral 262 (489)
.+.+++.+|+|+|||+.+-..
T Consensus 77 ~~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 77 GYDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp TCCEEECCCSCSSSHHHHHHH
T ss_pred CCCEEEECCCCCcccHHHHHH
Confidence 357999999999999875433
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=92.29 E-value=0.071 Score=54.52 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|||||||.+.|+...
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3455678899999999999999999865
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=92.29 E-value=0.053 Score=52.18 Aligned_cols=28 Identities=21% Similarity=0.259 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.072 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++.-.
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 3555678899999999999999999855
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.083 Score=45.69 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.+++.|++|+|||+++..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.34 Score=50.29 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=16.1
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
++.+|+.||+|+|||..+
T Consensus 131 ~~~~l~~a~TGsGKT~~~ 148 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAF 148 (479)
T ss_dssp CCEEEEECCSSSSHHHHH
T ss_pred CCcEEEEcCCCCchhHHH
Confidence 478999999999999874
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=92.27 E-value=0.12 Score=58.02 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..++++||||||||+++..++..+
T Consensus 372 ~~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 372 PLSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHH
Confidence 357999999999999888777654
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.13 Score=50.90 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-++|.|+.|+||||+++.+....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 457899999999999999999764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=92.25 E-value=0.054 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++..+
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999865
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.07 Score=57.92 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++++|+||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999988877654
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.091 Score=49.23 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-|.|.|++|+||||+++.+++.+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999987
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=92.15 E-value=0.08 Score=53.65 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+|||||.+.++...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 455678899999999999999999865
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=92.14 E-value=0.083 Score=45.31 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..+++.|++|+|||+++..+....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.089 Score=45.28 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.061 Score=54.38 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++.-.
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence 3455678899999999999999999865
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=92.09 E-value=0.084 Score=45.47 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999874
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=92.09 E-value=0.38 Score=48.23 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.5
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAr 260 (489)
++.+++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 4789999999999998753
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.59 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+++++.+|+|+|||..+-..+.+
T Consensus 29 ~~~iv~~~TGsGKTl~~~~~i~~ 51 (696)
T 2ykg_A 29 KNTIICAPTGCGKTFVSLLICEH 51 (696)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEcCCCchHHHHHHHHHHH
Confidence 68999999999999988776653
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=92.04 E-value=0.19 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
...++|.|++|+|||+++..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999999876
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=91.94 E-value=0.088 Score=49.41 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=25.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++.-+.|.|+.|+||||+++.++.. +..+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 34456889999999999999999987 4444433
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.93 E-value=0.096 Score=45.28 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|++.|++|+|||+|+.++....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 469999999999999999998643
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.15 Score=51.88 Aligned_cols=35 Identities=20% Similarity=0.286 Sum_probs=28.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
...++++.||+|+|||++++.++..+ +..++.++.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34689999999999999999998765 566666654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.12 Score=44.94 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=21.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
....|++.|++|+|||+|+..+...
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999763
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=91.85 E-value=0.09 Score=53.61 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||+|+|||||.+.++...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 455678899999999999999999865
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=91.84 E-value=0.89 Score=42.68 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.5
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
+++++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998643
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.3 Score=57.73 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+++..+-|.||+|+||||+++.+.+-.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCc
Confidence 4666779999999999999999998865
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.43 Score=47.48 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=15.6
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
+.+++.+|+|+|||..+-
T Consensus 59 ~~~lv~~~TGsGKT~~~~ 76 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFS 76 (394)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 679999999999998743
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=0.1 Score=45.23 Aligned_cols=24 Identities=21% Similarity=0.387 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|++.|++|+|||++++.+....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998754
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.13 Score=45.13 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
....|++.|++|+|||+++..+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 446799999999999999999976
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.093 Score=46.02 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+.|.|++|+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=91.69 E-value=0.076 Score=47.49 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.1 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.497 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.088 Score=54.03 Aligned_cols=28 Identities=32% Similarity=0.454 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+||||||+.+.|+...
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4566779999999999999999999743
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=91.65 E-value=0.078 Score=52.13 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=24.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||.|+|||||.+.++...
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 4566778999999999999999999865
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.11 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=0.11 Score=45.58 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+....
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 579999999999999999998743
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=91.56 E-value=0.11 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.54 E-value=0.098 Score=45.64 Aligned_cols=23 Identities=43% Similarity=0.677 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|++.+...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.063 Score=54.37 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||+|+|||||.+.++...
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999855
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.12 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=91.41 E-value=0.086 Score=51.04 Aligned_cols=27 Identities=30% Similarity=0.609 Sum_probs=23.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.. +..+.|.||.|+|||||.+.++...
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 35 5678999999999999999999865
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=91.38 E-value=0.12 Score=44.66 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+++.++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=91.38 E-value=0.29 Score=49.62 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
++++.+|+|+|||..+-.++... +.+++.+-.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P 60 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 79999999999999998887665 556665554
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.19 Score=46.33 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
|.|.|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5688999999999999999987 66666554
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.12 Score=45.75 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999873
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=91.27 E-value=0.073 Score=52.79 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++..+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4666789999999999999999999865
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=91.23 E-value=0.12 Score=44.79 Aligned_cols=23 Identities=26% Similarity=0.440 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+++..+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=91.23 E-value=0.13 Score=44.45 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=91.22 E-value=0.12 Score=45.88 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...+.|.|++|+|||+|...++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356899999999999999999864
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.11 Score=45.02 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.+++.|++|+|||+|+..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999963
|
| >1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=0.25 Score=46.70 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC--KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el--~~~~i~v~~ 275 (489)
...+++.|.+|+||||++..++..+ +..+..++.
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 3568899999999999999999776 556666653
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.19 Score=46.58 Aligned_cols=31 Identities=26% Similarity=0.294 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--CCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--KTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--~~~~i~v 273 (489)
+-|.|.|+.|+||||+++.+++.+ +.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347889999999999999999988 4555544
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.10 E-value=0.17 Score=56.70 Aligned_cols=23 Identities=39% Similarity=0.637 Sum_probs=18.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.||||||||+++..+...
T Consensus 376 ~~~lI~GppGTGKT~~i~~~i~~ 398 (802)
T 2xzl_A 376 PLSLIQGPPGTGKTVTSATIVYH 398 (802)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999987766553
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=91.08 E-value=0.25 Score=47.28 Aligned_cols=23 Identities=39% Similarity=0.574 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+.|.|.|+||+|||+|..++...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36899999999999999999764
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=91.05 E-value=0.15 Score=50.62 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+.+++|.|++|+|||++|.++... |..++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 4578999999999999999999875 44443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.12 Score=45.97 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999873
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=91.04 E-value=0.13 Score=44.83 Aligned_cols=24 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+++..+....
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.12 Score=54.19 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+.|.||.|+|||||+|.++...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 345679999999999999999999865
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.02 E-value=1.2 Score=45.76 Aligned_cols=18 Identities=22% Similarity=0.353 Sum_probs=15.6
Q ss_pred CceEEEEcCCCCcHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lA 259 (489)
.+.+++.+|+|+|||...
T Consensus 93 g~d~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 93 GRDLMACAQTGSGKTAAF 110 (434)
T ss_dssp TCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCchHHH
Confidence 478999999999999843
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.14 Score=44.91 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-.+|+||.|+|||++..|+.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998765
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.13 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.13 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999875
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.16 Score=45.24 Aligned_cols=23 Identities=17% Similarity=0.381 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999999875
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.13 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 56999999999999999999874
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=0.14 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|++.|++|+|||+|+..+....
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 469999999999999999998743
|
| >3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.84 E-value=0.23 Score=46.23 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=29.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc-EEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT-FFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~-~i~v~~s~l 278 (489)
.|..-|+|+|.|||||+++|+.+.+.++.. +..++.++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~ 48 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGP 48 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHH
Confidence 455778999999999999999998877532 444555553
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.14 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.400 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..++...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=0.13 Score=45.12 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=90.76 E-value=0.14 Score=44.27 Aligned_cols=22 Identities=41% Similarity=0.748 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
-.+++.|++|+|||+|++.+..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 3689999999999999999864
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=90.73 E-value=1.2 Score=47.16 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=16.2
Q ss_pred CCceEEEEcCCCCcHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLA 259 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lA 259 (489)
..+.+++.+|+|+|||..+
T Consensus 110 ~~~~~lv~apTGsGKTl~~ 128 (563)
T 3i5x_A 110 EDHDVIARAKTGTGKTFAF 128 (563)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCccHHH
Confidence 3578999999999999853
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=90.73 E-value=0.13 Score=52.25 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+-|.||+|+|||||++.++...
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 4556678999999999999999999855
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=90.72 E-value=0.13 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.70 E-value=0.084 Score=48.00 Aligned_cols=26 Identities=12% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
.++..+.|.|++|+|||+|.++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44467999999999999999998753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.15 Score=44.77 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.67 E-value=0.15 Score=45.62 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|+|.|++|+|||+|+..+...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.15 Score=45.52 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=90.55 E-value=0.15 Score=45.13 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.14 Score=44.80 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
..|++.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999965
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.22 Score=51.82 Aligned_cols=30 Identities=23% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.++.-+.|.||+|+|||||++.++......
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 345678999999999999999999988543
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.15 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999888754
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.16 Score=44.48 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+...-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 579999999999999999998643
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=90.40 E-value=0.16 Score=44.64 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=90.40 E-value=0.16 Score=44.80 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56899999999999999999875
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.31 Score=56.59 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.+.+|+.||+|+|||.++-..+... +...+.+..
T Consensus 199 g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~P 235 (1108)
T 3l9o_A 199 GESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSP 235 (1108)
T ss_dssp TCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcC
Confidence 3689999999999999876555443 555555543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=90.36 E-value=0.16 Score=45.77 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||++++.+...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999873
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=0.24 Score=49.91 Aligned_cols=29 Identities=21% Similarity=0.293 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
++.-+.|.||+|+|||||++.++......
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 44678999999999999999999988544
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=90.32 E-value=1.3 Score=49.20 Aligned_cols=33 Identities=24% Similarity=0.473 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh--------CCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC--------KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el--------~~~~i~v~~ 275 (489)
+++++.+|+|+|||..+-..+... +.+++.+..
T Consensus 264 ~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~P 304 (797)
T 4a2q_A 264 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLAT 304 (797)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeC
Confidence 679999999999999877766554 555555544
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=90.31 E-value=0.13 Score=51.18 Aligned_cols=30 Identities=30% Similarity=0.345 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.+.++||.|++|+|||++|-++.. -|..++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv 175 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFV 175 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEE
Confidence 457899999999999999988765 355544
|
| >1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A* | Back alignment and structure |
|---|
Probab=90.30 E-value=0.14 Score=48.94 Aligned_cols=27 Identities=22% Similarity=0.220 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
-+.|+|++|||||++++.+...+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 477999999999999999999888765
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.22 E-value=0.15 Score=45.16 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999864
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=90.19 E-value=0.2 Score=44.01 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..+++.|++|+|||+++..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999999864
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.12 E-value=0.19 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||+|+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.47 Score=45.76 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999764
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.18 Score=44.97 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+...-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.06 E-value=0.18 Score=45.37 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999999864
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=90.04 E-value=0.53 Score=44.69 Aligned_cols=32 Identities=16% Similarity=0.156 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.-.+++||.|+|||+.+-..+... |..++.+.
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456789999999997776665544 55665554
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=89.98 E-value=0.19 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
..|++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999875
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.98 E-value=0.13 Score=45.29 Aligned_cols=24 Identities=29% Similarity=0.379 Sum_probs=20.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
....|++.|++|+|||+|+..+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998863
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.96 E-value=0.19 Score=44.86 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+.++....
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998743
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=89.90 E-value=0.19 Score=44.56 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~e 265 (489)
+...+++.|++|+|||+++..+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467999999999999999999753
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=89.89 E-value=0.4 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
..|+|.|+||+|||+|..++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 4689999999999999999976
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.88 E-value=0.21 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|++.|++|+|||+|+.++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999873
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=89.84 E-value=0.19 Score=45.32 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|++.|++|+|||+|+..+....
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 579999999999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.82 E-value=0.18 Score=45.12 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
-.|+|.|++|+|||+|+..+...-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=89.79 E-value=0.18 Score=45.12 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|+|.|++|+|||+|+..+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999888764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.78 E-value=0.18 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999998864
|
| >1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=0.25 Score=50.84 Aligned_cols=34 Identities=24% Similarity=0.374 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
..|+++.|++|+|||++++.+...+ +.+++.++.
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dp 89 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 89 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 3799999999999999998877654 777777765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 489 | ||||
| d1ixza_ | 247 | c.37.1.20 (A:) AAA domain of cell division protein | 3e-82 | |
| d1lv7a_ | 256 | c.37.1.20 (A:) AAA domain of cell division protein | 2e-79 | |
| d1r7ra3 | 265 | c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p | 3e-63 | |
| d1e32a2 | 258 | c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p | 4e-51 | |
| d1w44a_ | 321 | c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta | 3e-36 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 8e-27 | |
| d1d2na_ | 246 | c.37.1.20 (A:) Hexamerization domain of N-ethylmal | 2e-25 | |
| d1gvnb_ | 273 | c.37.1.21 (B:) Plasmid maintenance system epsilon/ | 8e-23 | |
| d1ofha_ | 309 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 5e-20 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 9e-14 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 8e-12 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 3e-11 | |
| d1r6bx2 | 268 | c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, A | 2e-08 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 1e-07 | |
| d1g41a_ | 443 | c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId | 6e-07 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 1e-06 | |
| d1g8pa_ | 333 | c.37.1.20 (A:) ATPase subunit of magnesium chelata | 9e-06 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 9e-05 | |
| d1qvra2 | 387 | c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus | 2e-04 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 2e-04 | |
| d1um8a_ | 364 | c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2 | 5e-04 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 0.001 | |
| d2fnaa2 | 283 | c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo | 0.002 | |
| d1ny5a2 | 247 | c.37.1.20 (A:138-384) Transcriptional activator si | 0.002 |
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Score = 252 bits (646), Expect = 3e-82
Identities = 88/247 (35%), Positives = 132/247 (53%), Gaps = 12/247 (4%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKA 261
+P V ++ + G E AK LKE V +K P F + KG+LL GPPG GKT LA+A
Sbjct: 3 APKVTFKDVAGAEEAKEELKEIV-EFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARA 61
Query: 262 VATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR 321
VA E + F S S V + G ++ LFE A+ HAP +F+DEIDA+ +RG
Sbjct: 62 VAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV 121
Query: 322 -SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPD 378
++ + +LL++MDG + D + V+AATN P LD A+LR R +++I + PD
Sbjct: 122 GGGNDEREQTLNQLLVEMDGF-EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 180
Query: 379 TEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGR 438
+ R + + E + LL +RT G+ G+D+ + EAA+ R EGR
Sbjct: 181 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAR------EGR 234
Query: 439 QEVAPDD 445
+++ D
Sbjct: 235 RKITMKD 241
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Score = 245 bits (628), Expect = 2e-79
Identities = 81/246 (32%), Positives = 129/246 (52%), Gaps = 12/246 (4%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
+ + G + AK + E V ++ P F L KG+L+ GPPGTGKT+LAKA+
Sbjct: 7 IKTTFADVAGCDEAKEEVAELVE-YLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAI 65
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR- 321
A E K FF IS S V + G ++ +FE A+ AP IF+DEIDA+ QRG
Sbjct: 66 AGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG 125
Query: 322 SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 379
H+ + ++L++MDG + +E + V+AATN P LD A+LR R +++++V LPD
Sbjct: 126 GGHDEREQTLNQMLVEMDGF-EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184
Query: 380 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQ 439
R + + + + ++ T G+SG+D+ + EAA+ R ++
Sbjct: 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG------NKR 238
Query: 440 EVAPDD 445
V+ +
Sbjct: 239 VVSMVE 244
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 204 bits (520), Expect = 3e-63
Identities = 93/261 (35%), Positives = 152/261 (58%), Gaps = 15/261 (5%)
Query: 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAV 262
P V WE I GLE+ KR L+E V P+++P F ++P KG+L +GPPG GKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 263 ATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARS 322
A EC+ F +I +++ W G+SE ++ +F+ AR AP +F DE+D+I RG
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121
Query: 323 E-HEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDT 379
+ A+ R+ ++L +MDG++ VF++ ATN P +D A+LR RL++ I +PLPD
Sbjct: 122 DGGGAADRVINQILTEMDGMSTKKN-VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 180
Query: 380 EARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM--VLLEG 437
++R A+ ++ L + + + L + T G+SG+D+ + + A +R + +
Sbjct: 181 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRE 240
Query: 438 RQ--------EVAPDDELPQI 450
R+ EV DD +P+I
Sbjct: 241 RERQTNPSAMEVEEDDPVPEI 261
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 172 bits (437), Expect = 4e-51
Identities = 86/261 (32%), Positives = 146/261 (55%), Gaps = 7/261 (2%)
Query: 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVAT 264
V ++ + G +KE V +P+++P F + + P +GILL+GPPGTGKT++A+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 265 ECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEH 324
E FF I+ ++SK G+SE ++ FE A +AP+ IF+DE+DAI +R ++
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE--KTHG 118
Query: 325 EASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEAR 382
E RR+ ++LL MDGL Q V V+AATN P +D A+ R R ++ + + +PD R
Sbjct: 119 EVERRIVSQLLTLMDGLKQRAH-VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGR 177
Query: 383 RAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 442
+ + + + + + + T G+ G+D+ + EAA+Q +R+ M L++ E
Sbjct: 178 LEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237
Query: 443 PDDELPQIGPIRPEDVEIALK 463
+ + + + +D AL
Sbjct: 238 DAEVMNSL-AVTMDDFRWALS 257
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Score = 134 bits (339), Expect = 3e-36
Identities = 40/278 (14%), Positives = 78/278 (28%), Gaps = 29/278 (10%)
Query: 138 HVQNTSDMAV-----YEQYRTQFQGSGSTCLNGVLANVINER--LQKPLLPNFDSAETRA 190
H+ + A Y + T GS +GVL +V + L + +
Sbjct: 3 HLYDAKSFAKLRAAQYAAFHTDAPGSWFDHTSGVLESVEDGTPVLAIGVESGDAIVFDKN 62
Query: 191 LAE---SLCRDIIRGSPDVKW--ESIKGLENAKRLLKEAVV--MPIKYPKYFTGLLS-PW 242
+ + V ++ R + + P
Sbjct: 63 AQRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYA 122
Query: 243 KGILLF-GPPGTGKTMLAKAVATEC--KTTFFNISASSVVSKWRGDSEKLIKVLFELARH 299
G+++ G +GKT L A+ K + + +S + D + +
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ 182
Query: 300 HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359
H I +D + +I + R +LL + + S V+A+ N P
Sbjct: 183 HR--VIVIDSLKNVIGAA-GGNTTSGGISRGAFDLLSDIGAMAAS-RGCVVIASLN-PTS 237
Query: 360 ----LDAAMLR--RLEKRILVPLPDTEARRAMFESLLP 391
+ + R LV D + +
Sbjct: 238 NDDKIVELVKEASRSNSTSLVISTDVDGEWQVLTRTGE 275
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 108 bits (272), Expect = 8e-27
Identities = 36/235 (15%), Positives = 66/235 (28%), Gaps = 27/235 (11%)
Query: 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266
+W + + LL + + + K + + L GP +GKT LA A+ C
Sbjct: 121 EWMAG--VAWLHCLLPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 178
Query: 267 KTTFFNISASSVVSK-WRGDSEKLIKVLFELA------RHHAPSTIFLDEIDAIISQRGE 319
N++ G + V+FE PS ++ +D +
Sbjct: 179 GGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDG 238
Query: 320 ARS-EHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPL 376
+ E K + + N E R K+I
Sbjct: 239 SVKVNLEKKHLNKRTQIFPP-----------GIVTMN---EYSVPKTLQARFVKQIDFRP 284
Query: 377 PDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431
D L + +S LL+ ++ + ++ RL
Sbjct: 285 KDYLKHCLERSEFLLEKRIIQS-GIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Score = 102 bits (255), Expect = 2e-25
Identities = 46/261 (17%), Positives = 95/261 (36%), Gaps = 27/261 (10%)
Query: 191 LAESLCRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGP 250
A + II+ V + L++ + L+++ +P +LL GP
Sbjct: 3 YASYIMNGIIKWGDPVT----RVLDDGELLVQQT----------KNSDRTPLVSVLLEGP 48
Query: 251 PGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSE-KLIKVLFELARHHAPSTIFLDE 309
P +GKT LA +A E F I + + + ++ + +K +F+ A S + +D+
Sbjct: 49 PHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDD 108
Query: 310 IDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR-RL 368
I+ ++ S + LL+ + + ++ T+ L +
Sbjct: 109 IERLLDYV---PIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAF 165
Query: 369 EKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYS---GSDIRLVSKEAAM 425
I V P+ + E+L + + ++ +G G L+ E ++
Sbjct: 166 STTIHV--PNIATGEQLLEALELLGN-FKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSL 222
Query: 426 Q--PLRRLMVLLEGRQEVAPD 444
Q P R+ L +E
Sbjct: 223 QMDPEYRVRKFLALLREEGAS 243
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Score = 95.8 bits (237), Expect = 8e-23
Identities = 26/275 (9%), Positives = 67/275 (24%), Gaps = 37/275 (13%)
Query: 221 LKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV- 279
+ + ++ + LL G PG+GKT L A+ E + I +
Sbjct: 11 FENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 70
Query: 280 --SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337
+ + K + + ++ + + +
Sbjct: 71 QHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATM 130
Query: 338 MDGLTQSDEL--------VFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEARRAMFE 387
+ ++ L + A R + + +
Sbjct: 131 LQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNLPTNLET 190
Query: 388 SLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDEL 447
+ L E + YS + +S + ++
Sbjct: 191 LHKTGLFSDIRL---YNREGVKLYSSLETPSISPKETLEKELN----------------- 230
Query: 448 PQIGPIRPEDVEIALKNTRPSAHLHAHR-YEKFNA 481
+ ++++ L+ L+ H+ +F A
Sbjct: 231 ---RKVSGKEIQPTLERIEQKMVLNKHQETPEFKA 262
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 88.4 bits (218), Expect = 5e-20
Identities = 55/285 (19%), Positives = 103/285 (36%), Gaps = 32/285 (11%)
Query: 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATEC 266
+ I G +AKR + A+ + + L K IL+ GP G GKT +A+ +A
Sbjct: 14 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA 73
Query: 267 KTTFFNISASSV--VSKWRGDSEKLIKVLFELA-----RHHAPSTIFLDEIDAIISQRGE 319
F + A+ V + + +I+ L + A +F+DEID I ++GE
Sbjct: 74 NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK-ICKKGE 132
Query: 320 ARSEHEASRRLKTELLIQMDGLTQSD--------ELVFVLAA---TNLPWELDAAMLRRL 368
+ ++ +LL ++G T S ++F+ + P +L + RL
Sbjct: 133 YSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRL 192
Query: 369 EKRILVPLPDTEARRA----MFESLLPSQ-----TGEESLPYDLLVERTEGYSGSDIRLV 419
R+ + SL T ++ + + + +
Sbjct: 193 PIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK 252
Query: 420 SKEAAMQPLRRLM-VLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463
++ + L +M L++ A D + I V AL
Sbjct: 253 TENIGARRLHTVMERLMDKISFSASDMNGQTVN-IDAAYVADALG 296
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 68.4 bits (166), Expect = 9e-14
Identities = 42/219 (19%), Positives = 71/219 (32%), Gaps = 23/219 (10%)
Query: 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266
+ G E K+ L+ + + P + +LLFGPPG GKT LA +A E
Sbjct: 7 TLDEYIGQERLKQKLRVYLEAAKARKE-------PLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 267 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 326
S ++ + +F+DEI + Q E
Sbjct: 60 GVNLRVTSGPAIEKPGDLAA-------ILANSLEEGDILFIDEIHRLSRQAEEHLYPAME 112
Query: 327 SRRLK---TELLIQMDGLTQSDELVFVLAATNLPWELDAAMLR--RLEKRILVPLPDTEA 381
+ + + + A T P + A +L + + + P+ A
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTR-PGLITAPLLSRFGIVEHLEYYTPEELA 171
Query: 382 RRAM-FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLV 419
+ M LL + EE+ + R+ G RL
Sbjct: 172 QGVMRDARLLGVRITEEAA--LEIGRRSRGTMRVAKRLF 208
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 63.3 bits (152), Expect = 8e-12
Identities = 36/262 (13%), Positives = 69/262 (26%), Gaps = 25/262 (9%)
Query: 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAV 262
SP + + E + L + ++ P + L G PGTGKT+ + +
Sbjct: 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNPG------HHYPRATLLGRPGTGKTVTLRKL 63
Query: 263 ATECK----TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRG 318
K F I+ + E + R FL + + +R
Sbjct: 64 WELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERD 123
Query: 319 EARSEHEA-------SRRLKTELLIQMDGLTQSDELVFVLAATNLPW---ELDAAMLRRL 368
L Q + + V+ N +
Sbjct: 124 LYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMG 183
Query: 369 EKRILVPLPDTEARRAMFESLL---PSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAM 425
+ I + + ++ ++ + T + D A+
Sbjct: 184 KYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAI 243
Query: 426 QPLRR--LMVLLEGRQEVAPDD 445
L R GR+ +AP+D
Sbjct: 244 DILYRSAYAAQQNGRKHIAPED 265
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 61.1 bits (147), Expect = 3e-11
Identities = 43/225 (19%), Positives = 80/225 (35%), Gaps = 23/225 (10%)
Query: 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266
+ G EN K+ L A+ + +LL GPPG GKT LA +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVL-------DHVLLAGPPGLGKTTLAHIIASEL 59
Query: 267 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEA 326
+T S +V + GD ++ +F+DEI + E + A
Sbjct: 60 QTNIHVTSGPVLVKQ--GDMAAILT------SLERGDVLFIDEIHRLNKAVEELL--YSA 109
Query: 327 SRRLKTELLIQMDGLTQSDEL----VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEAR 382
+ +++I +S + ++ AT L + + R + + +
Sbjct: 110 IEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKEL 169
Query: 383 RAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQ 426
+ + + E +++ +R+ G IRL K
Sbjct: 170 KEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLT-KRVRDM 213
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Score = 53.1 bits (127), Expect = 2e-08
Identities = 43/167 (25%), Positives = 66/167 (39%), Gaps = 23/167 (13%)
Query: 240 SPWKGILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGDSE 287
LL G G GKT +A+ +A +C +I + +K+RGD E
Sbjct: 37 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFE 96
Query: 288 KLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELL---IQMDGLTQS 344
K K L + S +F+DEI II + + +A+ +K L I++ G T
Sbjct: 97 KRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 156
Query: 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLP 391
E + E D A+ RR +K + P E + L P
Sbjct: 157 QEFSNIF-------EKDRALARRFQKIDITE-PSIEETVQIINGLKP 195
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 50.5 bits (119), Expect = 1e-07
Identities = 28/275 (10%), Positives = 65/275 (23%), Gaps = 49/275 (17%)
Query: 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT 268
++ L + + + G G GKT LAK
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLS---DVNMIYGSIGRVGIGKTTLAKFTVKRVSE 72
Query: 269 TFFNISASSVVSKWRG--------------------------DSEKLIKVLFEL-ARHHA 301
+ + + ++K L + +
Sbjct: 73 AAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENH 132
Query: 302 PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL- 360
+ LDE +++S A + R+ E+ + + V + +
Sbjct: 133 YLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDG--VNRIGFLLVASDVRALSYMR 190
Query: 361 --DAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYD---LLVERTEGYSGS- 414
+ ++ ++ +P + + E + L+ + G
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
Query: 415 ----DIRLVSKEAAMQPLRRLMVLLEGRQEVAPDD 445
+ K A GR ++ D
Sbjct: 251 GSARRAIVALKMACEMAEA------MGRDSLSEDL 279
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Score = 49.4 bits (117), Expect = 6e-07
Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 8/94 (8%)
Query: 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSP--WKGILLFGPPGTGKTMLAKAVATECKTTF 270
G +AKR + A+ + + L K IL+ GP G GKT +A+ +A F
Sbjct: 18 GQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 77
Query: 271 FNISASSVVSKWRG----DSEKLIKVLFELARHH 300
+ A+ G + + +I+ L + A
Sbjct: 78 IKVEATKFT--EVGYVGKEVDSIIRDLTDSAMKL 109
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (112), Expect = 1e-06
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 5/85 (5%)
Query: 207 KWESIKGLENAKRLLKEAVVM-----PIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKA 261
+ + G + + LK + + ++ +L+GPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 262 VATECKTTFFNISASSVVSKWRGDS 286
VA E +AS V SK ++
Sbjct: 72 VAQELGYDILEQNASDVRSKTLLNA 96
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Score = 45.3 bits (106), Expect = 9e-06
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 12/54 (22%)
Query: 211 IKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVAT 264
I G E+ K L V P G+ G+L+FG GTGK+ +A+A
Sbjct: 9 IVGQEDMKLALLLTAVDP--------GI----GGVLVFGDRGTGKSTAVRALAA 50
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.7 bits (96), Expect = 9e-05
Identities = 21/111 (18%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 207 KWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC 266
++ E LK P P LL+GP GTGK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLPHL-----------LLYGPNGTGKKTRCMALLESI 57
Query: 267 KTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQR 317
V + KL + H + + D I+ Q
Sbjct: 58 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 108
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 41.6 bits (97), Expect = 2e-04
Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 245 ILLFGPPGTGKTMLAKAVA------------TECKTTFFNISASSVVSKWRGD-SEKLIK 291
+L G PG GKT + + +A + + + +K+RG+ E+L
Sbjct: 46 PVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKA 105
Query: 292 VLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351
V+ E+ + +F+DE+ ++ G+A +A LK L EL +
Sbjct: 106 VIQEVVQSQGEVILFIDELHTVVGA-GKAEGAVDAGNMLKPAL--------ARGELRLIG 156
Query: 352 AATNLPWEL---DAAMLRRLEKRILVPLPDTEARRAM 385
A T + D A+ RR + + E +
Sbjct: 157 ATTLDEYREIEKDPALERRFQPVYVDEPTVEETISIL 193
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 40.1 bits (92), Expect = 2e-04
Identities = 11/58 (18%), Positives = 21/58 (36%)
Query: 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHH 300
K + + G +GK++L +A TT V + G E+ ++
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMAL 65
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Score = 39.8 bits (92), Expect = 5e-04
Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 6/104 (5%)
Query: 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFNI------SASSVVSKWRGDSEKLIKVLF 294
ILL GP G+GKT++A+ +A A V +L++
Sbjct: 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASD 126
Query: 295 ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338
+ +F+DEID I + S + L+++
Sbjct: 127 WNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKI 170
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 37.6 bits (86), Expect = 0.001
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELAR 298
+LL G PG+GK+ +A+A+A + + + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Score = 37.8 bits (86), Expect = 0.002
Identities = 17/119 (14%), Positives = 30/119 (25%), Gaps = 8/119 (6%)
Query: 228 PIKYPKYFTG-------LLSPWKG-ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279
P K F L L+ G TGK+ + K E + +
Sbjct: 7 PKDNRKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE 66
Query: 280 SKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQM 338
+ + + L + L + I +E + + K L
Sbjct: 67 ERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN 125
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Score = 37.6 bits (87), Expect = 0.002
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 18/84 (21%)
Query: 245 ILLFGPPGTGKTMLAKAV--------ATECKTTFFNISASSVVSKWRG-------DSEKL 289
+L+ G G GK ++A+ + +I ++ G +
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 290 IKVLFELARHHAPSTIFLDEIDAI 313
+ FELA T+FLDEI +
Sbjct: 86 KEGFFELADG---GTLFLDEIGEL 106
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 489 | |||
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 100.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 100.0 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 100.0 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.91 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.89 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 99.88 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.88 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.85 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.8 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.8 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 99.76 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.75 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 99.74 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.74 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.69 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.66 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.62 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.6 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.58 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 99.56 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.55 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.52 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.52 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.52 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.47 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.44 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.33 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.33 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.29 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.15 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 99.01 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.94 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.37 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 98.08 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 98.05 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 97.93 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.9 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.89 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.85 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.76 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.74 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.69 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.68 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.64 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.62 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.58 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.54 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.49 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.48 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.45 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.43 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 97.37 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.37 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.35 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.33 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 97.33 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.32 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.3 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.29 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.29 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.28 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.25 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.21 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 97.19 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 97.17 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 97.17 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.12 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 97.12 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 97.1 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 97.1 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 97.05 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.97 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.94 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.92 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.92 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.87 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.86 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.81 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.81 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.71 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.69 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.69 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.65 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 96.64 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 96.59 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.53 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.42 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 96.27 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 96.26 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 96.26 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 96.2 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 96.19 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.13 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 96.1 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.01 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 95.8 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 95.73 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.59 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.58 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 95.51 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.44 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 95.26 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.15 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.12 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 95.09 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 95.01 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.94 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.92 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.82 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.79 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.74 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.69 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.63 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.56 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.47 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.35 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.33 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 94.3 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.21 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 94.2 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.19 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.14 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 94.04 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.98 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.92 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.88 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.88 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.87 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 93.5 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.47 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 93.42 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.4 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.37 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.26 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.16 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.1 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 93.09 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.09 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 93.09 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 92.99 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 92.9 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.75 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.69 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 92.65 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 92.64 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.6 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 92.59 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.59 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 92.54 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 92.49 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 92.44 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 92.34 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 92.33 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 92.24 | |
| d1ihua1 | 296 | Arsenite-translocating ATPase ArsA {Escherichia co | 92.22 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 92.18 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.16 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 92.02 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.99 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 91.97 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 91.8 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 91.75 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.53 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.48 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 91.44 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 91.42 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.36 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.35 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 91.3 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.21 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.2 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.11 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 91.06 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.03 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.97 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 90.93 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 90.91 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 90.85 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 90.8 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.67 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.45 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 90.45 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.4 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.33 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 90.27 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.26 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 90.26 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.25 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.25 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.23 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 89.97 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.8 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 89.78 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 89.7 | |
| d1byia_ | 224 | Dethiobiotin synthetase {Escherichia coli [TaxId: | 89.7 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.69 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 89.69 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.62 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 89.57 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 89.56 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 89.51 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.46 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.32 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 89.18 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 89.09 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.04 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 88.97 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.7 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 88.56 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 88.42 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 88.27 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 88.23 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 88.0 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 87.8 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 87.52 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 87.51 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 87.41 | |
| d1ihua2 | 279 | Arsenite-translocating ATPase ArsA {Escherichia co | 87.4 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.35 | |
| d1c9ka_ | 180 | Adenosylcobinamide kinase/adenosylcobinamide phosp | 87.1 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 86.88 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 86.87 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 86.33 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 85.18 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 85.17 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.76 | |
| d1cp2a_ | 269 | Nitrogenase iron protein {Clostridium pasteurianum | 84.37 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 84.27 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 84.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 82.8 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 82.72 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.55 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 82.28 | |
| d1t5la1 | 413 | Nucleotide excision repair enzyme UvrB {Bacillus c | 82.07 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 81.66 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 80.42 |
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-42 Score=335.51 Aligned_cols=247 Identities=33% Similarity=0.522 Sum_probs=216.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
.+..++++|+||+|++++|++|.+.+.+ +.+++.+.+. ..+++++|||||||||||++|+++|++++.+++.++++++
T Consensus 3 ~~~~~~~t~~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l 81 (256)
T d1lv7a_ 3 TEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF 81 (256)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred CCCCCCCCHHHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHh
Confidence 3567889999999999999999997754 7788888775 6778999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCC
Q 011305 279 VSKWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLP 357 (489)
Q Consensus 279 ~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p 357 (489)
.++|+|++++.++.+|+.|+..+||||||||+|.+...++... ..+....++++.|+..++++.. .++++||+|||+|
T Consensus 82 ~~~~~g~~~~~l~~~f~~A~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~-~~~v~vIatTn~~ 160 (256)
T d1lv7a_ 82 VEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRP 160 (256)
T ss_dssp TTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-SSCEEEEEEESCT
T ss_pred hhcchhHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC-CCCEEEEEeCCCc
Confidence 9999999999999999999999999999999999998765432 2334556788999999998864 4569999999999
Q ss_pred CcccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHh
Q 011305 358 WELDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLL 435 (489)
Q Consensus 358 ~~Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~l 435 (489)
+.+|++++| ||++.++++.|+.++|.+||+.++.+.+...+.++..+++.|.||+++||..++++|+..++++
T Consensus 161 ~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adi~~l~~~A~~~a~~~----- 235 (256)
T d1lv7a_ 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARG----- 235 (256)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT-----
T ss_pred ccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc-----
Confidence 999999997 9999999999999999999999999998888899999999999999999999999998877652
Q ss_pred hhhhccCCCCCCCCCCCCCHHHHHHHHhhhC
Q 011305 436 EGRQEVAPDDELPQIGPIRPEDVEIALKNTR 466 (489)
Q Consensus 436 e~~~~~~~~~~~~~~~~It~eDf~~AL~~~~ 466 (489)
+ ...|+.+||++|++++-
T Consensus 236 -~------------~~~i~~~d~~~Al~rv~ 253 (256)
T d1lv7a_ 236 -N------------KRVVSMVEFEKAKDKIM 253 (256)
T ss_dssp -T------------CSSBCHHHHHHHHHHHT
T ss_pred -C------------CCccCHHHHHHHHHHHh
Confidence 1 12489999999998763
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.2e-42 Score=334.19 Aligned_cols=242 Identities=37% Similarity=0.586 Sum_probs=210.8
Q ss_pred CCCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 202 GSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 202 ~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
+.|+++|+||+|++++|++|++.+. ++.+++.+..+ ..+++++||+||||||||++|+++|++++.+++.++++++.+
T Consensus 2 ~~p~~~~~di~G~~~~k~~l~~~i~-~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~ 80 (247)
T d1ixza_ 2 EAPKVTFKDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 80 (247)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCcHHHHccHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh
Confidence 4689999999999999999998765 57788877765 667789999999999999999999999999999999999999
Q ss_pred hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc
Q 011305 281 KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE 359 (489)
Q Consensus 281 ~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~ 359 (489)
+|+|++++.++.+|..|+..+|+||||||+|.++.++.... .......++++.|+..|+++.. ..+++||+|||+|+.
T Consensus 81 ~~~g~~~~~l~~~f~~a~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~-~~~vivi~tTn~~~~ 159 (247)
T d1ixza_ 81 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-DTAIVVMAATNRPDI 159 (247)
T ss_dssp SCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-TCCEEEEEEESCGGG
T ss_pred ccccHHHHHHHHHHHHHHHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC-CCCEEEEEeCCCccc
Confidence 99999999999999999999999999999999998765432 2334456789999999998854 446899999999999
Q ss_pred ccHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhh
Q 011305 360 LDAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEG 437 (489)
Q Consensus 360 Ld~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~ 437 (489)
+|++++| ||+..++|+.|+.++|.+||+.++.......+.+++.+++.|+||+++||..+|++|+..++++ +
T Consensus 160 ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~~~~~~~~la~~t~g~s~~di~~lv~~A~l~a~~~------~ 233 (247)
T d1ixza_ 160 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAARE------G 233 (247)
T ss_dssp SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHT------T
T ss_pred cCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCccccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc------C
Confidence 9999996 9999999999999999999999999888888899999999999999999999999998877653 1
Q ss_pred hhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 438 RQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 438 ~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
. ..|+++||++|++
T Consensus 234 ~------------~~i~~~d~~~A~~ 247 (247)
T d1ixza_ 234 R------------RKITMKDLEEAAS 247 (247)
T ss_dssp C------------SSBCHHHHHHHTC
T ss_pred C------------CCcCHHHHHHhhC
Confidence 1 2499999999973
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.8e-42 Score=335.85 Aligned_cols=255 Identities=33% Similarity=0.570 Sum_probs=221.5
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhcc
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRG 284 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g 284 (489)
++|+||+|++++|++|++.+..++.+|+.+... ..+++++|||||||||||++|+++|++++.+++.++++++.+.+.|
T Consensus 1 ~~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~~~~g 80 (258)
T d1e32a2 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 80 (258)
T ss_dssp CCGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTTSCTT
T ss_pred CChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcccccc
Confidence 579999999999999999999999999998875 6778999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHH
Q 011305 285 DSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAM 364 (489)
Q Consensus 285 ~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al 364 (489)
.....++.+|..|+..+|+||||||+|.+..++.... ++....++..++..+++.. ...+++||+|||+|+.+|+++
T Consensus 81 ~~~~~l~~~f~~A~~~~p~il~iDeid~l~~~r~~~~--~~~~~~~~~~~~~~~~~~~-~~~~vlvi~tTn~~~~ld~al 157 (258)
T d1e32a2 81 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLK-QRAHVIVMAATNRPNSIDPAL 157 (258)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCC--CTTHHHHHHHHHHHHHTCC-CSSCEEEEEEESCGGGSCGGG
T ss_pred cHHHHHHHHHHHHHhcCCeEEEehhhhhhccCCCCCC--CchHHHHHHHhcccccccc-ccCCccEEEeCCCccccchhh
Confidence 9999999999999999999999999999998876543 2334567888888888764 445599999999999999999
Q ss_pred Hh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccC
Q 011305 365 LR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVA 442 (489)
Q Consensus 365 ~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~ 442 (489)
+| ||++.++++.|+.++|..||+.++++.....+.+++.|++.|+|||++||..+|++|++.+++|.....+......
T Consensus 158 ~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~~~~~~~~la~~t~G~s~adl~~lv~~A~~~a~~~~~~~~~~~~~~~ 237 (258)
T d1e32a2 158 RRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDETI 237 (258)
T ss_dssp TSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCSSCC
T ss_pred hhcccccceeECCCCCHHHHHHHhhhhccCcccccccchhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccccchhhhhh
Confidence 98 9999999999999999999999999888888889999999999999999999999999999988665543222111
Q ss_pred CCCCCCCCCCCCHHHHHHHHhh
Q 011305 443 PDDELPQIGPIRPEDVEIALKN 464 (489)
Q Consensus 443 ~~~~~~~~~~It~eDf~~AL~~ 464 (489)
..+ .....+||++||+.||++
T Consensus 238 ~~~-~~~~~~it~~Df~~AL~~ 258 (258)
T d1e32a2 238 DAE-VMNSLAVTMDDFRWALSQ 258 (258)
T ss_dssp BHH-HHHHCCBCHHHHHHHHTC
T ss_pred hhh-hhccCccCHHHHHHHhCc
Confidence 100 111245999999999974
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.3e-39 Score=319.81 Aligned_cols=229 Identities=38% Similarity=0.718 Sum_probs=200.5
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhccc-CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGL-LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~-~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
.|+++|+||+|++++|++|.+.+..++.+++.+... ..+++++|||||||||||++|+++|++++.+++.++++++.+.
T Consensus 1 ~p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~~ 80 (265)
T d1r7ra3 1 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM 80 (265)
T ss_dssp CCCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHTS
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhhc
Confidence 378999999999999999999999999999887765 6778899999999999999999999999999999999999999
Q ss_pred hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccc-hhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc
Q 011305 282 WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEAR-SEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL 360 (489)
Q Consensus 282 ~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~-~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L 360 (489)
+.|..+..++.+|..|+..+||||+|||+|.+...++... ......+++++.|+..++++.... +++||+|||.++.+
T Consensus 81 ~~~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~v~vi~ttn~~~~l 159 (265)
T d1r7ra3 81 WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGATNRPDII 159 (265)
T ss_dssp CTTTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-------CCEEEECCBSCTTT
T ss_pred cccchHHHHHHHHHHHHhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCC-CEEEEEeCCCchhC
Confidence 9999999999999999999999999999999998765332 233445678899999999886543 48899999999999
Q ss_pred cHHHHh--hcccccccCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHHH
Q 011305 361 DAAMLR--RLEKRILVPLPDTEARRAMFESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRLM 432 (489)
Q Consensus 361 d~al~r--Rf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~~ 432 (489)
|++++| ||++.++++.|+.++|.+||+.++++.....+.+++.+++.|+||+++||..+|++|...++++..
T Consensus 160 d~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~~~~~l~~la~~t~g~s~~di~~lv~~A~~~A~~~~~ 233 (265)
T d1r7ra3 160 DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 233 (265)
T ss_dssp SCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC----CCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHC-
T ss_pred CHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCchhhhhHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999987 999999999999999999999999988888889999999999999999999999999999987744
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.91 E-value=2.2e-25 Score=215.52 Aligned_cols=196 Identities=18% Similarity=0.229 Sum_probs=140.6
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccch-
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDS- 286 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~- 286 (489)
.+.++|..+..+.+.+......... ......|+++|||+||||||||++|+++|++++.+++.+++++....+.+..
T Consensus 8 ~~~~i~~~~~i~~i~~~~~~~~~~~--~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~g~~~~~~ 85 (246)
T d1d2na_ 8 MNGIIKWGDPVTRVLDDGELLVQQT--KNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 85 (246)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHH--HHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred ccCCcCcCHHHHHHHHHHHHHHHHH--hccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccccccccch
Confidence 4567775554444444333322211 1112356789999999999999999999999999999999988766655544
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHH-HH
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAA-ML 365 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~a-l~ 365 (489)
.+.++.+|+.|+..+||||||||+|.+...+.... ...+.+++.|+..+++......+|+||+|||+++.++++ ++
T Consensus 86 ~~~i~~if~~A~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~ll~~l~~~~~~~~~v~vi~tTn~~~~ld~~~~~ 162 (246)
T d1d2na_ 86 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEML 162 (246)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCT
T ss_pred hhhhhhhhhhhhhcccceeehhhhhhHhhhccccc---chhHHHHHHHHHHhcCCCccccceeeeeccCChhhccchhhc
Confidence 46789999999999999999999999987654321 123567788999999887777789999999999999875 66
Q ss_pred hhcccccccCCCC-HHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcCCc
Q 011305 366 RRLEKRILVPLPD-TEARRAMFESLLPSQTGEESLPYDLLVERTEGYS 412 (489)
Q Consensus 366 rRf~~~i~~~~Pd-~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G~s 412 (489)
+||+..+++|.++ .+++..+++.. ....+.+...+++.+.|.+
T Consensus 163 ~rF~~~i~~P~~~~r~~il~~l~~~----~~~~~~~~~~i~~~~~g~~ 206 (246)
T d1d2na_ 163 NAFSTTIHVPNIATGEQLLEALELL----GNFKDKERTTIAQQVKGKK 206 (246)
T ss_dssp TTSSEEEECCCEEEHHHHHHHHHHH----TCSCHHHHHHHHHHHTTSE
T ss_pred CccceEEecCCchhHHHHHHHHHhc----cCCChHHHHHHHHHcCCCc
Confidence 7999999886543 33333443332 1223345666777777754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.89 E-value=1.9e-23 Score=208.29 Aligned_cols=180 Identities=22% Similarity=0.299 Sum_probs=143.7
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhccc--CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh--hhhccc
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGL--LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV--SKWRGD 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~--~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~--~~~~g~ 285 (489)
.|+||+++|+.+.+.+..++.+....... ..|++++||+||||||||++|+++|++++.+++.++++++. +.+.|.
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~~~~~ 94 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhcccccccccceeEeee
Confidence 58999999999999886554444332221 23679999999999999999999999999999999999997 447899
Q ss_pred hHHHHHHHHHHHHh-----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC-------CCcEEEEEE
Q 011305 286 SEKLIKVLFELARH-----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS-------DELVFVLAA 353 (489)
Q Consensus 286 ~~~~l~~lf~~A~~-----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~-------~~~viVIat 353 (489)
.++.++.+|..+.. .+||||||||+|.+.+.+..... ....+.+++.||..+||.... ..++++|++
T Consensus 95 ~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~-~~~~~gv~~~LL~~~dg~~~~~~~~~i~~s~ilfi~~ 173 (309)
T d1ofha_ 95 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA-DVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 173 (309)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSS-HHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred ccccccccchhhhcccccccCCceEEehhhhhhhhhccCccc-chhhhHHHHHhhHHhcCCEEecCCeEEEccceeEEec
Confidence 99999999988754 35799999999999987654432 222345788899999975321 223556665
Q ss_pred ----eCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 354 ----TNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 354 ----Tn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
++.+..++++++.||+..+.++.|+..++.+|+..+.
T Consensus 174 ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~~~~ 214 (309)
T d1ofha_ 174 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPH 214 (309)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSST
T ss_pred cchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHHHHH
Confidence 5778889999999999999999999999999987654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=99.88 E-value=9e-25 Score=217.66 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=125.4
Q ss_pred ccCchhhccc-CCCCceE-EEEcCCCCcHHHHHHHHHHHhC--CcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcE
Q 011305 229 IKYPKYFTGL-LSPWKGI-LLFGPPGTGKTMLAKAVATECK--TTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPST 304 (489)
Q Consensus 229 l~~~~~~~~~-~~~~~~v-LL~GppGtGKT~lAralA~el~--~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~V 304 (489)
...|..+..+ ...++|+ ||+||||||||.+|+++|.+++ .+|+.++++++.++|+|++++.++.+|+.|+. |+|
T Consensus 108 ~~~~~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~~~~G~~e~~~~~~f~~a~~--~~i 185 (321)
T d1w44a_ 108 GCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQ--HRV 185 (321)
T ss_dssp SBCCEEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHH--CSE
T ss_pred ccchHHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhhcccchHHHHHHHHHHHHhh--ccE
Confidence 3455555554 3445665 5589999999999999999986 78999999999999999999999999999985 799
Q ss_pred EEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCc----ccHHHHh--hcccccccCCCC
Q 011305 305 IFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWE----LDAAMLR--RLEKRILVPLPD 378 (489)
Q Consensus 305 L~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~----Ld~al~r--Rf~~~i~~~~Pd 378 (489)
|||||||.+.+.++.... ....++++++||.+||++.... +++||+|||+ +. +++++.+ ||+..+.++.||
T Consensus 186 lf~DEid~~~~~r~~~~~-~~~~~r~v~~lL~e~dg~~~~~-~v~viaatN~-~~~~~~i~~~~~r~~Rf~~~v~v~~pd 262 (321)
T d1w44a_ 186 IVIDSLKNVIGAAGGNTT-SGGISRGAFDLLSDIGAMAASR-GCVVIASLNP-TSNDDKIVELVKEASRSNSTSLVISTD 262 (321)
T ss_dssp EEEECCTTTC------------CCHHHHHHHHHHHHHHHHH-TCEEEEECCC-CCCCHHHHHHHHHHHHHSCSEEEEECS
T ss_pred EEeehhhhhccccccCCC-CCcchhhhhhhhhhccccccCC-CeEEEEeCCC-cccccchhhhhhccCcccceeecCCCC
Confidence 999999999998865433 2334578999999999986544 5889999994 44 4555555 999999999999
Q ss_pred HHHHHHHHHHhcCCCC
Q 011305 379 TEARRAMFESLLPSQT 394 (489)
Q Consensus 379 ~~eR~~IL~~~l~~~~ 394 (489)
.+.|.+|++.+.....
T Consensus 263 ~~~r~~il~~~~~~~~ 278 (321)
T d1w44a_ 263 VDGEWQVLTRTGEGLQ 278 (321)
T ss_dssp STTEEEEEEECBTTCC
T ss_pred hHHHHHHHHHhccCcc
Confidence 9999999988765543
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=1.3e-21 Score=186.22 Aligned_cols=215 Identities=17% Similarity=0.166 Sum_probs=153.4
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~ 283 (489)
++.+|++++|++++++.|+.++...... ..+..++|||||||||||++|+++|++++.+++.+++.+....
T Consensus 4 RP~~~~divGqe~~~~~l~~~i~~~~~~-------~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~-- 74 (238)
T d1in4a2 4 RPKSLDEFIGQENVKKKLSLALEAAKMR-------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ-- 74 (238)
T ss_dssp SCSSGGGCCSCHHHHHHHHHHHHHHHHH-------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred CCCcHHHcCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccH--
Confidence 3458999999999999999998764321 2344689999999999999999999999999999998776422
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC---------------ccCCCcE
Q 011305 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------------TQSDELV 348 (489)
Q Consensus 284 g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~---------------~~~~~~v 348 (489)
..+...+.. ....++++|||+|.+....+ +.++..++.. .....++
T Consensus 75 ----~~~~~~~~~--~~~~~~~~ide~~~~~~~~~-------------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (238)
T d1in4a2 75 ----GDMAAILTS--LERGDVLFIDEIHRLNKAVE-------------ELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 135 (238)
T ss_dssp ----HHHHHHHHH--CCTTCEEEEETGGGCCHHHH-------------HHHHHHHHTSCCCC---------------CCC
T ss_pred ----HHHHHHHHh--hccCCchHHHHHHHhhhHHH-------------hhcccceeeeeeeeeecCcccccccccCCCCe
Confidence 233333333 23458999999999864422 2233332211 1123457
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
++|++||++..+++++++||...+.++.|+.+++..+++..........+.+ ++.+++.+.| +.+.+..+++.+...+
T Consensus 136 ~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~g-d~R~ai~~l~~~~~~~ 214 (238)
T d1in4a2 136 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDML 214 (238)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCC-CHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999999999887777665444 6677776665 5555555555443322
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 428 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 428 ~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
... +. ..||.+++.++++.+
T Consensus 215 ~~~------~~------------~~it~~~~~~al~~l 234 (238)
T d1in4a2 215 TVV------KA------------DRINTDIVLKTMEVL 234 (238)
T ss_dssp HHH------TC------------SSBCHHHHHHHHHHH
T ss_pred HHh------cC------------CccCHHHHHHHHHhh
Confidence 111 00 128999999998754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=1.2e-20 Score=179.80 Aligned_cols=216 Identities=19% Similarity=0.148 Sum_probs=148.8
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhc
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWR 283 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~ 283 (489)
++.+|+|++|++++++.|+.++...... ..++.++||+||||||||++|+++|++++.++..++++.....
T Consensus 4 RP~~~ddivGq~~~~~~L~~~i~~~~~~-------~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~-- 74 (239)
T d1ixsb2 4 RPKTLDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP-- 74 (239)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHHHHTTS-------SSCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSH--
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccc--
Confidence 4668999999999999999998764432 2345789999999999999999999999999999998765321
Q ss_pred cchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC---------------ccCCCcE
Q 011305 284 GDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL---------------TQSDELV 348 (489)
Q Consensus 284 g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~---------------~~~~~~v 348 (489)
........... ...+|++|||+|.+....+ ..++..++.. ......+
T Consensus 75 ----~~~~~~~~~~~-~~~~i~~iDe~~~~~~~~~-------------~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 136 (239)
T d1ixsb2 75 ----GDLAAILANSL-EEGDILFIDEIHRLSRQAE-------------EHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 136 (239)
T ss_dssp ----HHHHHHHHTTC-CTTCEEEEETGGGCCHHHH-------------HHHHHHHHHSEEEEECSCTTCCCEEEEECCCC
T ss_pred ----hhhHHHHHhhc-cCCCeeeeecccccchhHH-------------HhhhhhhhhhhhhhhhccchhhhhcccCCCCE
Confidence 11111111111 2347999999998854421 2233333211 1123446
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhHH
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQP 427 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~a 427 (489)
+++++|+++....++.++|+...+.+..|+.+++..++...+.......+. .++.++..+.| ..+....+++.+...
T Consensus 137 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~g-d~R~a~~~l~~~~~~- 214 (239)
T d1ixsb2 137 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDF- 214 (239)
T ss_dssp EEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTS-SHHHHHHHHHHHHHH-
T ss_pred EEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCC-CHHHHHHHHHHHHHH-
Confidence 678888888888878888888999999999999999999988877766543 46678888877 333333333332211
Q ss_pred HHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 428 LRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 428 ~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
.. ......||.+++.+++..+
T Consensus 215 -------a~----------~~~~~~It~~~~~~~l~~l 235 (239)
T d1ixsb2 215 -------AQ----------VAGEEVITRERALEALAAL 235 (239)
T ss_dssp -------HT----------TSCCSCBCHHHHHHHHHHH
T ss_pred -------HH----------HhCCCCcCHHHHHHHHhhh
Confidence 10 0111349999999998754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.80 E-value=3e-19 Score=168.50 Aligned_cols=211 Identities=20% Similarity=0.222 Sum_probs=142.6
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-----~~i~v 273 (489)
+.+++.+.+|+|++|++++++.|+.++... ...++||+||||||||++|+++|++++. .++..
T Consensus 4 w~ekyrP~~~~divg~~~~~~~L~~~i~~~------------~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~ 71 (227)
T d1sxjc2 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEG------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 71 (227)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hhhhhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEe
Confidence 445677889999999999999999987541 1236999999999999999999999742 35666
Q ss_pred eccchhhhhccchHHHHHHHHH-HHH-----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCc
Q 011305 274 SASSVVSKWRGDSEKLIKVLFE-LAR-----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDEL 347 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~-~A~-----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~ 347 (489)
+.++..+... ...... ... .....+++|||+|.+... ..+.|+..++.. ...
T Consensus 72 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~-------------~~~~Ll~~le~~---~~~ 129 (227)
T d1sxjc2 72 NASDDRGIDV------VRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERY---TKN 129 (227)
T ss_dssp CTTSCCSHHH------HHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHT---TTT
T ss_pred cccccCCeee------eecchhhccccccccCCCeEEEEEeccccchhh-------------HHHHHHHHhhhc---ccc
Confidence 6655432211 111111 111 123359999999988543 345566666532 345
Q ss_pred EEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcCCcHHHHHHHHHHHHhH
Q 011305 348 VFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEGYSGSDIRLVSKEAAMQ 426 (489)
Q Consensus 348 viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G~sg~Di~~l~~~A~~~ 426 (489)
++++++||.+..+.+++++|| ..+.|+.|+.++...++...+...+...+. .++.+++.+.| |
T Consensus 130 ~~~~~~~~~~~~i~~~i~sr~-~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~G----d----------- 193 (227)
T d1sxjc2 130 TRFCVLANYAHKLTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG----D----------- 193 (227)
T ss_dssp EEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT----C-----------
T ss_pred eeeccccCcHHHhHHHHHHHH-hhhccccccccccccccccccccccccCCHHHHHHHHHHcCC----c-----------
Confidence 778889999999999999999 568999999999999999888776655332 24555555544 3
Q ss_pred HHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHh
Q 011305 427 PLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALK 463 (489)
Q Consensus 427 a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~ 463 (489)
+|++++.++....... ......||.+++.+++.
T Consensus 194 -~R~ain~Lq~~~~~~~---~~~~~~It~~~v~e~~g 226 (227)
T d1sxjc2 194 -MRRVLNVLQSCKATLD---NPDEDEISDDVIYECCG 226 (227)
T ss_dssp -HHHHHHHTTTTTTTTC---SSSCCCBCHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhcC---CCCCCeeCHHHHHHHhC
Confidence 3444444443222111 11223599999998864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.80 E-value=2.4e-19 Score=169.79 Aligned_cols=184 Identities=21% Similarity=0.181 Sum_probs=134.1
Q ss_pred hhhhhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcE
Q 011305 196 CRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK-----TTF 270 (489)
Q Consensus 196 ~~~~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~-----~~~ 270 (489)
.+.+..++.+.+|+||+|++++++.|+.++... ...++||+||||||||++|+++|++++ .++
T Consensus 11 ~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~ 78 (231)
T d1iqpa2 11 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNF 78 (231)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred hchHHHHhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCe
Confidence 345667778889999999999999999988542 235799999999999999999999874 578
Q ss_pred EEEeccchhhhhccchHHHHHHHHH--HHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcE
Q 011305 271 FNISASSVVSKWRGDSEKLIKVLFE--LARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELV 348 (489)
Q Consensus 271 i~v~~s~l~~~~~g~~~~~l~~lf~--~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~v 348 (489)
+++++++..+.. ........... ......+.|+++||+|.+... ....|+..++ .....+
T Consensus 79 ~e~n~s~~~~~~--~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~-------------~~~~ll~~l~---~~~~~~ 140 (231)
T d1iqpa2 79 LELNASDERGIN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQD-------------AQQALRRTME---MFSSNV 140 (231)
T ss_dssp EEEETTCHHHHH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHH---HTTTTE
T ss_pred eEEecCcccchh--HHHHHHHHHHhhhhccCCCceEEeehhhhhcchh-------------HHHHHhhhcc---cCCcce
Confidence 888887654321 11111111111 112345679999999987544 2344555554 233457
Q ss_pred EEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 349 FVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 349 iVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
.+|++||.+..+++++++|| ..+.++.|+..+...+++..+...+...+ ..++.+++.+.|
T Consensus 141 ~~i~~~n~~~~i~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~g 202 (231)
T d1iqpa2 141 RFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG 202 (231)
T ss_dssp EEEEEESCGGGSCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT
T ss_pred EEEeccCChhhchHhHhCcc-ccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC
Confidence 78899999999999999999 56999999999999999999987776533 346667776665
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.5e-18 Score=165.90 Aligned_cols=176 Identities=22% Similarity=0.251 Sum_probs=127.7
Q ss_pred cCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc-----------
Q 011305 201 RGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT----------- 269 (489)
Q Consensus 201 ~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~----------- 269 (489)
.++.+.+|+|++|++++++.|+.++.. ...++++||+||||+|||++|++++++++.+
T Consensus 4 ~KyrP~~~~dlig~~~~~~~L~~~i~~-----------~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~ 72 (239)
T d1njfa_ 4 RKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC 72 (239)
T ss_dssp HHTCCSSGGGSCSCHHHHHHHHHHHHT-----------TCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCS
T ss_pred hhhCCCCHHHccChHHHHHHHHHHHHc-----------CCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccc
Confidence 356778999999999999999988754 1335679999999999999999999988432
Q ss_pred -------------EEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchhhhHHhhhcccchhhHHHHHHHH
Q 011305 270 -------------FFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEIDAIISQRGEARSEHEASRRLKT 332 (489)
Q Consensus 270 -------------~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~ 332 (489)
++.++.++.. ....++.+.+.+.. ....|++|||+|.+... .++
T Consensus 73 ~~~~~i~~~~~~~~~~~~~~~~~------~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-------------~q~ 133 (239)
T d1njfa_ 73 DNCREIEQGRFVDLIEIDAASRT------KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFN 133 (239)
T ss_dssp HHHHHHHHTCCTTEEEEETTCSS------SHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HHH
T ss_pred hHHHHHHcCCCCeEEEecchhcC------CHHHHHHHHHHHHhccccCCCEEEEEECcccCCHH-------------HHH
Confidence 4455543221 12234455544322 23359999999998432 456
Q ss_pred HHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CCHHHHHHHhcC
Q 011305 333 ELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LPYDLLVERTEG 410 (489)
Q Consensus 333 ~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~dl~~La~~t~G 410 (489)
.|+..|+. ....+.+|++||+++.+.+++++|| ..+.++.|+.++...++...+...+...+ ..++.++..+.|
T Consensus 134 ~Llk~lE~---~~~~~~~il~tn~~~~i~~~i~SRc-~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~G 208 (239)
T d1njfa_ 134 ALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 208 (239)
T ss_dssp HHHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTT
T ss_pred HHHHHHhc---CCCCeEEEEEcCCccccChhHhhhh-cccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCC
Confidence 78888873 3345778889999999999999999 66999999999999988888766555433 235556665554
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.75 E-value=3.9e-18 Score=162.88 Aligned_cols=202 Identities=20% Similarity=0.174 Sum_probs=132.2
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCch-hh----cccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPK-YF----TGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~-~~----~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
+.+++.+.+|++|+|++..+++|++++..+..... .+ .......+++||+||||||||++|+++|++++.+++.+
T Consensus 4 W~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~ 83 (253)
T d1sxja2 4 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 83 (253)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhcc
Confidence 45567888999999999999999998876332111 11 11134457899999999999999999999999999999
Q ss_pred eccchhhhhccchHHHHHHHH--------------HHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhc
Q 011305 274 SASSVVSKWRGDSEKLIKVLF--------------ELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMD 339 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf--------------~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ld 339 (489)
++++..+.+... ..+.... .......+.++++||+|.+....+. ....++....
T Consensus 84 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~----------~~~~~~~~~~ 151 (253)
T d1sxja2 84 NASDVRSKTLLN--AGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCR 151 (253)
T ss_dssp CTTSCCCHHHHH--HTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHH
T ss_pred ccccchhhHHHH--HHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhh----------hhHHHhhhhc
Confidence 998765432210 0000000 0011223569999999998654321 1223333332
Q ss_pred CCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCC-CCCHHHHHHHhcCCcHHHHHH
Q 011305 340 GLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE-SLPYDLLVERTEGYSGSDIRL 418 (489)
Q Consensus 340 g~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~-~~dl~~La~~t~G~sg~Di~~ 418 (489)
.....++++++++....++ .+++|+ ..+.|+.|+.+++..+++..+...+... +..++.+++.+.| |++.
T Consensus 152 ---~~~~~ii~i~~~~~~~~~~-~l~~~~-~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s~G----DiR~ 222 (253)
T d1sxja2 152 ---KTSTPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG----DIRQ 222 (253)
T ss_dssp ---HCSSCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT----CHHH
T ss_pred ---ccccccccccccccccccc-ccccee-eeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhCCC----cHHH
Confidence 2223455555555555555 455555 7899999999999999999887655543 3347888887765 7766
Q ss_pred HHH
Q 011305 419 VSK 421 (489)
Q Consensus 419 l~~ 421 (489)
++.
T Consensus 223 ai~ 225 (253)
T d1sxja2 223 VIN 225 (253)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=1.6e-17 Score=156.55 Aligned_cols=177 Identities=14% Similarity=0.104 Sum_probs=128.4
Q ss_pred hhcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC-----cEEEE
Q 011305 199 IIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT-----TFFNI 273 (489)
Q Consensus 199 ~~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~-----~~i~v 273 (489)
+.+++.+.+|+|++|++++++.|+.++... ...++||+||||||||++|+.+|++++. .++.+
T Consensus 5 w~eKyrP~~~~d~ig~~~~~~~L~~~~~~~------------~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~ 72 (224)
T d1sxjb2 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDG------------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLEL 72 (224)
T ss_dssp HHHHTCCSSGGGCCSCTHHHHHHHHHHHSC------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEE
T ss_pred hHhHhCCCCHHHhcCCHHHHHHHHHHHHcC------------CCCeEEEECCCCCCchhhHHHHHHHHhccccccccccc
Confidence 455678899999999999999999987541 1246999999999999999999999853 47788
Q ss_pred eccchhhhhccchHHHHHHHHHHHH-------hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCC
Q 011305 274 SASSVVSKWRGDSEKLIKVLFELAR-------HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDE 346 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~lf~~A~-------~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~ 346 (489)
++++..+. ..+...+.... ...+.+++|||+|.+... .++.|+..++ ....
T Consensus 73 n~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~-------------~~~~ll~~~e---~~~~ 130 (224)
T d1sxjb2 73 NASDDRGI------DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTME---LYSN 130 (224)
T ss_dssp CTTSCCSH------HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHH---HTTT
T ss_pred cccccCCc------eehhhHHHHHHHhhccCCCcceEEEEEecccccchh-------------HHHHHhhhcc---cccc
Confidence 87764322 22222222211 123459999999988654 2344555554 2334
Q ss_pred cEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 347 LVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 347 ~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
...++++|+....+.+++++|| ..+.|+.|+.++...++...+...+...+. .++.+++.+.|
T Consensus 131 ~~~~i~~~~~~~~i~~~l~sr~-~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~G 194 (224)
T d1sxjb2 131 STRFAFACNQSNKIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG 194 (224)
T ss_dssp TEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT
T ss_pred ceeeeeccCchhhhhhHHHHHH-HHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCC
Confidence 4667788899999999999999 569999999999999999988766655333 35566666554
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.74 E-value=2.4e-17 Score=155.66 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=124.9
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEE
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC------KTTFFNI 273 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el------~~~~i~v 273 (489)
..++.+.+|++++|++++++.|+.++... ...++||+||||||||++++++|+++ ....+.+
T Consensus 3 ~~ky~P~~~~diig~~~~~~~l~~~i~~~------------~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~ 70 (237)
T d1sxjd2 3 VEKYRPKNLDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILEL 70 (237)
T ss_dssp HHHTCCSSTTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred chhhCCCCHHHccCcHHHHHHHHHHHHcC------------CCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhhe
Confidence 45577889999999999999998876431 12469999999999999999999986 5666777
Q ss_pred eccchhhhhccchHHHHHHH------------HHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC
Q 011305 274 SASSVVSKWRGDSEKLIKVL------------FELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL 341 (489)
Q Consensus 274 ~~s~l~~~~~g~~~~~l~~l------------f~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~ 341 (489)
+++...+...- ...++.. ..........|++|||+|.+... ..+.++..++.
T Consensus 71 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~-------------~~~~l~~~~~~- 134 (237)
T d1sxjd2 71 NASDERGISIV--REKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTMET- 134 (237)
T ss_dssp CSSSCCCHHHH--TTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHHH-
T ss_pred eccccccchHH--HHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHH-------------HHHHHhhcccc-
Confidence 76554322110 0111111 11111122349999999988543 22334444431
Q ss_pred ccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCC-CHHHHHHHhcC
Q 011305 342 TQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESL-PYDLLVERTEG 410 (489)
Q Consensus 342 ~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~-dl~~La~~t~G 410 (489)
......+|.+++....+.+++++|| ..+.|+.|+.++...+|+..+...+...+. .++.+++.+.|
T Consensus 135 --~~~~~~~i~~~~~~~~~~~~l~sr~-~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~g 201 (237)
T d1sxjd2 135 --YSGVTRFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG 201 (237)
T ss_dssp --TTTTEEEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS
T ss_pred --ccccccccccccccccccccccchh-hhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCC
Confidence 2334567778888889999999999 668999999999999999998877665443 35777877765
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.69 E-value=9.2e-17 Score=152.95 Aligned_cols=183 Identities=15% Similarity=0.201 Sum_probs=117.6
Q ss_pred hcCCCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCc---EEEEecc
Q 011305 200 IRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTT---FFNISAS 276 (489)
Q Consensus 200 ~~~~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~---~i~v~~s 276 (489)
.+++.+.+|++++|++++++.|+.++... ....++||+||||||||++|+++|+++..+ ...++..
T Consensus 2 ~eky~P~~~~diig~~~~~~~L~~~~~~~-----------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~ 70 (252)
T d1sxje2 2 VDKYRPKSLNALSHNEELTNFLKSLSDQP-----------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 70 (252)
T ss_dssp TTTTCCCSGGGCCSCHHHHHHHHTTTTCT-----------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CcccCCCCHHHccCcHHHHHHHHHHHHcC-----------CCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccc
Confidence 46778889999999999999998765331 123479999999999999999999986211 1111110
Q ss_pred chh----------------------hhhccchHHHHHHHHHHH--------------HhcCCcEEEEchhhhHHhhhccc
Q 011305 277 SVV----------------------SKWRGDSEKLIKVLFELA--------------RHHAPSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 277 ~l~----------------------~~~~g~~~~~l~~lf~~A--------------~~~~p~VL~IDEiD~l~~~r~~~ 320 (489)
... .................. ......+++|||+|.+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~---- 146 (252)
T d1sxje2 71 QFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD---- 146 (252)
T ss_dssp ------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH----
T ss_pred cccccccchhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccc----
Confidence 000 000000111111111111 1122359999999987433
Q ss_pred chhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCC--C
Q 011305 321 RSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEE--S 398 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~--~ 398 (489)
..+.++..++. ....+.+|++||+++.+++++++|| ..++|+.|+.++..+++...+....... +
T Consensus 147 ---------~~~~l~~~~e~---~~~~~~~Il~tn~~~~i~~~l~sR~-~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~ 213 (252)
T d1sxje2 147 ---------AQAALRRTMEK---YSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETK 213 (252)
T ss_dssp ---------HHHHHHHHHHH---STTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCS
T ss_pred ---------cchhhhccccc---ccccccceeeeccccchhhhhhcch-heeeecccchhhHHHHHHHHHHHcCCCCCcH
Confidence 23445555542 3345778889999999999999999 5799999999999999998876655432 2
Q ss_pred CCHHHHHHHhcC
Q 011305 399 LPYDLLVERTEG 410 (489)
Q Consensus 399 ~dl~~La~~t~G 410 (489)
.-++.++..+.|
T Consensus 214 ~~l~~i~~~s~G 225 (252)
T d1sxje2 214 DILKRIAQASNG 225 (252)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHcCC
Confidence 235667776665
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.66 E-value=6.4e-15 Score=140.21 Aligned_cols=227 Identities=17% Similarity=0.111 Sum_probs=143.4
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccch
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSV 278 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l 278 (489)
.|....+.++|.+..++.+.+++...+..+ ..++.++||+||||||||++++++++.+ +..++.+++...
T Consensus 10 ~~~y~p~~l~~Re~ei~~l~~~l~~~l~~~------~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~ 83 (276)
T d1fnna2 10 SPSYVPKRLPHREQQLQQLDILLGNWLRNP------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83 (276)
T ss_dssp STTCCCSCCTTCHHHHHHHHHHHHHHHHST------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHhCC------CCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence 355566789999999999998887655443 2456799999999999999999999987 456777776433
Q ss_pred hhh----------------hccch-HHHHHHHHHHHHh-cCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcC
Q 011305 279 VSK----------------WRGDS-EKLIKVLFELARH-HAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDG 340 (489)
Q Consensus 279 ~~~----------------~~g~~-~~~l~~lf~~A~~-~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg 340 (489)
... ..+.. ......+...... ..+.++++|++|.+..... .....++..+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~----------~~~~~~~~~~~- 152 (276)
T d1fnna2 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDIL----------STFIRLGQEAD- 152 (276)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHH----------HHHHHHTTCHH-
T ss_pred hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhcccccccchhHHHHhhhhhh----------hhHHHHHhccc-
Confidence 211 11112 2223333333333 3456888999987743311 11111221111
Q ss_pred CccCCCcEEEEEEeCCC---CcccHHHHhhcc-cccccCCCCHHHHHHHHHHhcCCCCCC---CCCCHHHHHHHhc----
Q 011305 341 LTQSDELVFVLAATNLP---WELDAAMLRRLE-KRILVPLPDTEARRAMFESLLPSQTGE---ESLPYDLLVERTE---- 409 (489)
Q Consensus 341 ~~~~~~~viVIatTn~p---~~Ld~al~rRf~-~~i~~~~Pd~~eR~~IL~~~l~~~~~~---~~~dl~~La~~t~---- 409 (489)
......+.+|++++.. +.+++++.+|+. ..+.|+.|+.+++.+|++..+...... .+..++.+++.+.
T Consensus 153 -~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~ 231 (276)
T d1fnna2 153 -KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTP 231 (276)
T ss_dssp -HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSST
T ss_pred -cccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhh
Confidence 1223346677788775 357888888764 458999999999999999877543322 2223555666542
Q ss_pred ----CCcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 410 ----GYSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 410 ----G~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
+-+++.+..+++.|+..+..+ +. ..|+.+|+++|++++
T Consensus 232 ~~~~~G~~R~a~~ll~~a~~~A~~~------~~------------~~I~~edv~~A~~~~ 273 (276)
T d1fnna2 232 LDTNRGDARLAIDILYRSAYAAQQN------GR------------KHIAPEDVRKSSKEV 273 (276)
T ss_dssp TCTTSCCHHHHHHHHHHHHHHHHHT------TC------------SSCCHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHc------CC------------CCcCHHHHHHHHHHH
Confidence 224566666777765543321 11 249999999999875
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.62 E-value=8.5e-15 Score=140.15 Aligned_cols=234 Identities=13% Similarity=0.028 Sum_probs=139.7
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---------CcEEEEec
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------TTFFNISA 275 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---------~~~i~v~~ 275 (489)
....+.|.|.+...+.|.+.+..+..+... .......++|+||||||||++++++++++. ..+.++++
T Consensus 12 ~~~P~~~~~Re~e~~~l~~~l~~~~~~~~~---~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~ 88 (287)
T d1w5sa2 12 NYIPPELRVRRGEAEALARIYLNRLLSGAG---LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNA 88 (287)
T ss_dssp TCCCSSCSSSCHHHHHHHHHHHHHHHTSSC---BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEG
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHcCCC---CCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecc
Confidence 344678899988888888877554432211 011223467899999999999999999872 44555665
Q ss_pred cchhhh----------------hccchHHHHH-HHHHHHH-hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 276 SSVVSK----------------WRGDSEKLIK-VLFELAR-HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 276 s~l~~~----------------~~g~~~~~l~-~lf~~A~-~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
...... ..+.....+. .+..... ...+.++++||+|.+....+.... ....+..+.+.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iide~d~l~~~~~~~~~----~~~~l~~l~~~ 164 (287)
T d1w5sa2 89 FNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAE----DLYTLLRVHEE 164 (287)
T ss_dssp GGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHH----HHHHHHTHHHH
T ss_pred ccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhccCccccceeEEEEeccccccchh----HHHHHHHHHHh
Confidence 443221 1122333332 3333332 234568889999999765432211 11122233333
Q ss_pred hcCCccCCCcEEEEEEeCCCCc------ccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCCCC---HHHHHHHh
Q 011305 338 MDGLTQSDELVFVLAATNLPWE------LDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEESLP---YDLLVERT 408 (489)
Q Consensus 338 ldg~~~~~~~viVIatTn~p~~------Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d---l~~La~~t 408 (489)
+..... .....+|+.++.++. .++++.+||...++|+.|+.++..+|++..++........+ ++.+++.+
T Consensus 165 l~~~~~-~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~ 243 (287)
T d1w5sa2 165 IPSRDG-VNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVY 243 (287)
T ss_dssp SCCTTS-CCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHH
T ss_pred cchhhc-ccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHH
Confidence 333322 233455656655543 34677889999999999999999999998875433332222 66677766
Q ss_pred cC-----CcHHHHHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHHHHhh
Q 011305 409 EG-----YSGSDIRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEIALKN 464 (489)
Q Consensus 409 ~G-----~sg~Di~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~AL~~ 464 (489)
.. ...+....+++.|+..|.. ++. ..||.+|+++|+++
T Consensus 244 ~~~~~~~gd~R~ai~~l~~a~~~A~~------~~~------------~~It~~~V~~A~~e 286 (287)
T d1w5sa2 244 GEDKGGDGSARRAIVALKMACEMAEA------MGR------------DSLSEDLVRKAVSE 286 (287)
T ss_dssp CGGGTSCCCHHHHHHHHHHHHHHHHH------TTC------------SSCCHHHHHHHHHH
T ss_pred hccccCCCCHHHHHHHHHHHHHHHHH------cCC------------CCCCHHHHHHHHhc
Confidence 42 2445555566666654322 111 24999999999874
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.60 E-value=8.6e-15 Score=137.36 Aligned_cols=194 Identities=21% Similarity=0.257 Sum_probs=127.5
Q ss_pred CCCCCCcccc-C--cHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 203 SPDVKWESIK-G--LENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 203 ~~~~~~~dli-G--~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.|+.+|++.+ | .+.+.+.+++++..+- .....++||||+|||||+|++|+++++ +..++++++.
T Consensus 4 n~~~tFdnF~vg~~N~~a~~~~~~~~~~~~----------~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~ 73 (213)
T d1l8qa2 4 NPKYTLENFIVGEGNRLAYEVVKEALENLG----------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 73 (213)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHTTT----------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCChhhccCCCcHHHHHHHHHHHHhCcC----------CCCCcEEEECCCCCcHHHHHHHHHHHhccCccceEEechH
Confidence 4677899964 5 4556666776654421 122459999999999999999999987 6778888887
Q ss_pred chhhhhccchHH-HHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeC
Q 011305 277 SVVSKWRGDSEK-LIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATN 355 (489)
Q Consensus 277 ~l~~~~~g~~~~-~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn 355 (489)
++.......... ....+....+ ...+|+|||+|.+.++.. ....|...++.....+. .+|+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~--~~dll~iDDi~~i~~~~~-----------~~~~lf~lin~~~~~~~-~iiits~~ 139 (213)
T d1l8qa2 74 DFAQAMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKER-----------TQIEFFHIFNTLYLLEK-QIILASDR 139 (213)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCHH-----------HHHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred HHHHHHHHHHHccchhhHHHHHh--hccchhhhhhhhhcCchH-----------HHHHHHHHHHHHhhccc-eEEEecCC
Confidence 776544322211 1222332222 347999999999975522 22334444443333333 45666666
Q ss_pred CCCc---ccHHHHhhccc--ccccCCCCHHHHHHHHHHhcCCCCCCCCCC-HHHHHHHhcCCcHHHHHHHHHHH
Q 011305 356 LPWE---LDAAMLRRLEK--RILVPLPDTEARRAMFESLLPSQTGEESLP-YDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 356 ~p~~---Ld~al~rRf~~--~i~~~~Pd~~eR~~IL~~~l~~~~~~~~~d-l~~La~~t~G~sg~Di~~l~~~A 423 (489)
.|.. +.+.+.+|+.. .+.++ |+.++|.++++.++...+...+.+ ++.|++++. +.+++..+++..
T Consensus 140 ~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~~--~~R~L~~~l~~l 210 (213)
T d1l8qa2 140 HPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTK--NVREIEGKIKLI 210 (213)
T ss_dssp CGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHCS--SHHHHHHHHHHH
T ss_pred cchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcC--cHHHHHHHHHHh
Confidence 6654 45889999854 44555 677899999999998877775544 566777764 578887766643
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.58 E-value=2.3e-14 Score=138.61 Aligned_cols=163 Identities=25% Similarity=0.377 Sum_probs=123.1
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEec
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNISA 275 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~~ 275 (489)
-.++.++|.++..+++.+.+.. ....++||.||||+|||.+++.+|+.+ +..++.++.
T Consensus 15 ~~ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~ 82 (268)
T d1r6bx2 15 GGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 82 (268)
T ss_dssp TCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCC
T ss_pred CCCCcccChHHHHHHHHHHHhc------------CccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeee
Confidence 3578899999998888887633 233789999999999999999999975 578999999
Q ss_pred cchhh--hhccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEE
Q 011305 276 SSVVS--KWRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAA 353 (489)
Q Consensus 276 s~l~~--~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIat 353 (489)
+.+.. +|.|+.+..++.++..+......||||||++.+....+..+...+ +-+.+.....++. +-+|++
T Consensus 83 ~~liag~~~~g~~e~r~~~i~~~~~~~~~iIlfiDeih~l~~~g~~~g~~~d--------~a~~Lkp~L~rg~-i~vIga 153 (268)
T d1r6bx2 83 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVD--------AANLIKPLLSSGK-IRVIGS 153 (268)
T ss_dssp C---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHH--------HHHHHSSCSSSCC-CEEEEE
T ss_pred chHhccCccchhHHHHHHHHHHHhhccCCceEEecchHHHhcCCCCCCcccc--------HHHHhhHHHhCCC-CeEEEe
Confidence 98885 788999999999999998888889999999999876433222111 2233333334444 556666
Q ss_pred eCCC-----CcccHHHHhhcccccccCCCCHHHHHHHHHHhc
Q 011305 354 TNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMFESLL 390 (489)
Q Consensus 354 Tn~p-----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l 390 (489)
|... ..-|+++.+|| ..|.++.|+.++-..|++...
T Consensus 154 tT~eey~~~~e~d~al~rrF-~~I~V~Eps~e~t~~IL~~~~ 194 (268)
T d1r6bx2 154 TTYQEFSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLK 194 (268)
T ss_dssp ECHHHHHCCCCCTTSSGGGE-EEEECCCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhcHHHHhhh-cccccCCCCHHHHHHHHHHhh
Confidence 6432 24689999999 569999999999999998755
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=99.56 E-value=1.5e-16 Score=161.08 Aligned_cols=176 Identities=18% Similarity=0.093 Sum_probs=111.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh-ccchHHHHHHHHHHH------HhcCCcEEEEchhh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW-RGDSEKLIKVLFELA------RHHAPSTIFLDEID 311 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~-~g~~~~~l~~lf~~A------~~~~p~VL~IDEiD 311 (489)
.+..+++||+||||||||++|+++|+.++.+++.+++++..+.+ .+........+|..+ ....|+++++||+|
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD 230 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLD 230 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHH
T ss_pred CCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHh
Confidence 35557999999999999999999999999999999998875543 222222222222222 12345666677776
Q ss_pred hHHhhhcccchhhHHHHHHHHHHHHHhcCCcc---CCCcEEEEEEeCCCCcccHHHH-hhcccccccCCCCHHHHH-HHH
Q 011305 312 AIISQRGEARSEHEASRRLKTELLIQMDGLTQ---SDELVFVLAATNLPWELDAAML-RRLEKRILVPLPDTEARR-AMF 386 (489)
Q Consensus 312 ~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~---~~~~viVIatTn~p~~Ld~al~-rRf~~~i~~~~Pd~~eR~-~IL 386 (489)
.+...+++.... .++.... ......+|+|||+... +.++ .||+..+.+..|+...+. .++
T Consensus 231 ~l~~~~dg~~~~-------------~~~~~~~~~~~~~~~p~i~ttN~~~~--~~~r~~Rf~~~i~~~~~~~~~~~~~~l 295 (362)
T d1svma_ 231 NLRDYLDGSVKV-------------NLEKKHLNKRTQIFPPGIVTMNEYSV--PKTLQARFVKQIDFRPKDYLKHCLERS 295 (362)
T ss_dssp TTHHHHHCSSCE-------------EECCSSSCCEEECCCCEEEEECSCCC--CHHHHTTEEEEEECCCCHHHHHHHHTC
T ss_pred hcccccCCcchh-------------hhhhhhhchhhhccCCceeecccccc--cccccccCceEEeecCCCcHHHHHHHH
Confidence 654432211000 0000000 0001136789996432 2233 399999999888876664 444
Q ss_pred HHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 387 ESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 387 ~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
..+++.... ..+.+.++..+.+++++|++.+++.++....++.
T Consensus 296 ~~i~~~~~l--~~~~~~L~~li~~~s~~D~~~~i~~~~~~~~~~l 338 (362)
T d1svma_ 296 EFLLEKRII--QSGIALLLMLIWYRPVAEFAQSIQSRIVEWKERL 338 (362)
T ss_dssp THHHHTTCT--TCHHHHHHHHHHHSCGGGSCGGGHHHHHHHHHHH
T ss_pred HHHhcccCC--CCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 445544444 3456778888999999999999998887766654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.55 E-value=1.1e-14 Score=144.66 Aligned_cols=207 Identities=18% Similarity=0.201 Sum_probs=139.9
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-----hc
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-----WR 283 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-----~~ 283 (489)
..|+|++++++.+.+.+...... ......|...+||.||||+|||.+|+++|+.++.+++.++++++... ..
T Consensus 22 ~~viGQ~~a~~~v~~~v~~~~~~---l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~~~~l~ 98 (315)
T d1r6bx3 22 MLVFGQDKAIEALTEAIKMARAG---LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 98 (315)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTT---CSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSC
T ss_pred CeecChHHHHHHHHHHHHHHHcc---CCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhhhhhhc
Confidence 47999999999999887543211 01112344578999999999999999999999999999999887532 12
Q ss_pred cc----hHHHH-HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------ccCCCcEEE
Q 011305 284 GD----SEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDELVFV 350 (489)
Q Consensus 284 g~----~~~~l-~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~--------~~~~~~viV 350 (489)
|. ..... ..+.........+|+++||+|...++ +.+.|++.++.- ...-.+.++
T Consensus 99 g~~~gy~g~~~~~~l~~~~~~~~~~vvl~DeieKa~~~-------------V~~~lLqild~G~ltd~~Gr~vdf~n~ii 165 (315)
T d1r6bx3 99 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTDNNGRKADFRNVVL 165 (315)
T ss_dssp CCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETTTEEEECTTEEE
T ss_pred ccCCCccccccCChhhHHHHhCccchhhhcccccccch-------------HhhhhHHhhccceecCCCCCccCccceEE
Confidence 22 11111 11333344556689999999987533 667788877532 112346788
Q ss_pred EEEeCCCC-------------------------cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC-------CCC--
Q 011305 351 LAATNLPW-------------------------ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ-------TGE-- 396 (489)
Q Consensus 351 IatTn~p~-------------------------~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~-------~~~-- 396 (489)
|+|+|--. .+.|.++.|++..+.|.+.+.++..+|+...+... ...
T Consensus 166 I~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~l~~~~i~l~ 245 (315)
T d1r6bx3 166 VMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLE 245 (315)
T ss_dssp EEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEE
T ss_pred EeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 89998421 26788889999999999999999998887766322 111
Q ss_pred -CCCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 397 -ESLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 397 -~~~dl~~La~~--t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
.+..++.+++. ...+-.+.|+.+++.-...++.+.
T Consensus 246 ~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~~i~~~la~~ 283 (315)
T d1r6bx3 246 VSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANE 283 (315)
T ss_dssp ECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHTHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHH
Confidence 11224455553 345566888888777666666543
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.52 E-value=7.4e-15 Score=135.25 Aligned_cols=159 Identities=22% Similarity=0.367 Sum_probs=114.3
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 274 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~ 274 (489)
.-.++.++|.++..+++.+.+.. ....+++|.||||+|||++++.+|+.+ +.+++.++
T Consensus 18 ~g~ld~~igRd~Ei~~l~~iL~r------------~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld 85 (195)
T d1jbka_ 18 QGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred cCCCCCCcCcHHHHHHHHHHHhc------------cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEee
Confidence 34578899999999888877643 223689999999999999999999966 57899999
Q ss_pred ccchhh--hhccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 275 ASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 275 ~s~l~~--~~~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
.+.+.+ +|.|+.+..++.++..+.... ..||||||++.+.+..+..+. .+ +.+-|.-.+. ++. +.+|
T Consensus 86 ~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfIDeih~l~~~g~~~g~-~d----~~~~Lkp~L~----rg~-l~~I 155 (195)
T d1jbka_ 86 MGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGA-MD----AGNMLKPALA----RGE-LHCV 155 (195)
T ss_dssp HHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------C-CC----CHHHHHHHHH----TTS-CCEE
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEcchHHHHhcCCCCCCc-cc----HHHHHHHHHh----CCC-ceEE
Confidence 999874 567889999999998876544 569999999999765332111 11 1222333332 233 4456
Q ss_pred EEeCCC-----CcccHHHHhhcccccccCCCCHHHHHHHH
Q 011305 352 AATNLP-----WELDAAMLRRLEKRILVPLPDTEARRAMF 386 (489)
Q Consensus 352 atTn~p-----~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL 386 (489)
++|... -.-|+++.+|| ..|.+..|+.++-..||
T Consensus 156 gatT~eey~~~~e~d~aL~rrF-~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 156 GATTLDEYRQYIEKDAALERRF-QKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEECHHHHHHHTTTCHHHHTTE-EEEECCCCCHHHHHTTC
T ss_pred ecCCHHHHHHHHHcCHHHHhcC-CEeecCCCCHHHHHHHh
Confidence 665432 23589999999 56999999999877665
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.52 E-value=7.2e-14 Score=138.55 Aligned_cols=205 Identities=23% Similarity=0.293 Sum_probs=138.7
Q ss_pred ccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----
Q 011305 209 ESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK---- 281 (489)
Q Consensus 209 ~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~---- 281 (489)
+.|+||+++++.+...+...... ......|...+||+||+|+|||.+|+.+|+.+ +.+++.++++++...
T Consensus 23 ~~v~GQ~~ai~~v~~~i~~~~~~---l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~~~~~~ 99 (315)
T d1qvra3 23 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 99 (315)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGG
T ss_pred CeEeCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEeccccccchhhh
Confidence 36899999999998877653211 01112333467899999999999999999998 789999999877532
Q ss_pred --------hccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCc--------cCC
Q 011305 282 --------WRGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLT--------QSD 345 (489)
Q Consensus 282 --------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~--------~~~ 345 (489)
|+|..+ -..+.+..+.+..+|+++||+|...+. +++.|++.++.-. ...
T Consensus 100 ~L~g~~~gyvG~~~--~~~l~~~~~~~p~~Vvl~DEieK~~~~-------------v~~~ll~~l~~g~~~~~~gr~v~~ 164 (315)
T d1qvra3 100 RLIGAPPGYVGYEE--GGQLTEAVRRRPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLTDSHGRTVDF 164 (315)
T ss_dssp GC----------------CHHHHHHHCSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hhcCCCCCCcCccc--CChHHHHHHhCCCcEEEEehHhhcCHH-------------HHHHHHHHhccCceeCCCCcEecC
Confidence 233211 122344445555699999999987543 6677777776431 122
Q ss_pred CcEEEEEEeCCC--------------------------CcccHHHHhhcccccccCCCCHHHHHHHHHHhcCC-------
Q 011305 346 ELVFVLAATNLP--------------------------WELDAAMLRRLEKRILVPLPDTEARRAMFESLLPS------- 392 (489)
Q Consensus 346 ~~viVIatTn~p--------------------------~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~------- 392 (489)
.+.++|+|||-- ..+.|.++.||+..+.|.+.+.++..+|+...+..
T Consensus 165 ~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~~l~~rl~~ 244 (315)
T d1qvra3 165 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 244 (315)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHHHHHHHHHh
Confidence 468899999852 23788999999999999999999999988765422
Q ss_pred CCCCC---CCCHHHHHHH--hcCCcHHHHHHHHHHHHhHHHHHH
Q 011305 393 QTGEE---SLPYDLLVER--TEGYSGSDIRLVSKEAAMQPLRRL 431 (489)
Q Consensus 393 ~~~~~---~~dl~~La~~--t~G~sg~Di~~l~~~A~~~a~rR~ 431 (489)
..... +...+.|++. ...+-++.++.++++.....+...
T Consensus 245 ~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~~i~~~La~~ 288 (315)
T d1qvra3 245 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQK 288 (315)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHHH
T ss_pred ccccccccHHHHHHHHHhCCCCCCCcchHHHHHHHHHHHHHHHH
Confidence 22221 1224556665 345666888888887777766543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.52 E-value=6e-14 Score=139.68 Aligned_cols=157 Identities=24% Similarity=0.313 Sum_probs=99.6
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC----------------
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---------------- 267 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---------------- 267 (489)
|...|.+|+|++.+|+.|.-.+..+ ..+|+||.||||||||++||+++.-+.
T Consensus 2 ~~~~f~~I~Gq~~~kral~laa~~~------------~~h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~~~~ 69 (333)
T d1g8pa_ 2 PVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVE 69 (333)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGG
T ss_pred CCCChhhccCcHHHHHHHHHHHhcc------------CCCeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccCccc
Confidence 3456999999999999877544321 125899999999999999999998651
Q ss_pred -----------------CcEEEEeccchhhhhccch--HHHHH--------HHHHHHHhcCCcEEEEchhhhHHhhhccc
Q 011305 268 -----------------TTFFNISASSVVSKWRGDS--EKLIK--------VLFELARHHAPSTIFLDEIDAIISQRGEA 320 (489)
Q Consensus 268 -----------------~~~i~v~~s~l~~~~~g~~--~~~l~--------~lf~~A~~~~p~VL~IDEiD~l~~~r~~~ 320 (489)
.+++........+...|.. ..... ..+..|. .+|+||||++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~---~gvl~iDEi~~~~~----- 141 (333)
T d1g8pa_ 70 MIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARAN---RGYLYIDECNLLED----- 141 (333)
T ss_dssp GSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHT---TEEEEETTGGGSCH-----
T ss_pred cccchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeecccccccc---ccEeecccHHHHHH-----
Confidence 1222222111111111110 01110 1222232 27999999987743
Q ss_pred chhhHHHHHHHHHHHHHhcCCc----------cCCCcEEEEEEeCCCC-cccHHHHhhcccccccCCC-CHHHHHHHHHH
Q 011305 321 RSEHEASRRLKTELLIQMDGLT----------QSDELVFVLAATNLPW-ELDAAMLRRLEKRILVPLP-DTEARRAMFES 388 (489)
Q Consensus 321 ~~~~~~~~~i~~~LL~~ldg~~----------~~~~~viVIatTn~p~-~Ld~al~rRf~~~i~~~~P-d~~eR~~IL~~ 388 (489)
.+++.|++.|+.-. ..+..+++++|+|..+ .+++++++||+..+.++.| +...+.++...
T Consensus 142 --------~~~~aLl~~me~~~v~i~r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~ 213 (333)
T d1g8pa_ 142 --------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRR 213 (333)
T ss_dssp --------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHH
T ss_pred --------HHHHHHhhhhcCCeEEecccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHh
Confidence 36788888886221 1123467788877654 4999999999998888876 55666655543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.2e-13 Score=126.84 Aligned_cols=146 Identities=12% Similarity=0.130 Sum_probs=102.1
Q ss_pred CcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCC------------------------
Q 011305 213 GLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKT------------------------ 268 (489)
Q Consensus 213 G~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~------------------------ 268 (489)
+++.+.++|...+.. ...++++||+||||+|||++|+.+|+.+..
T Consensus 6 w~~~~~~~l~~~~~~-----------~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (207)
T d1a5ta2 6 WLRPDFEKLVASYQA-----------GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHP 74 (207)
T ss_dssp GGHHHHHHHHHHHHT-----------TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCT
T ss_pred ccHHHHHHHHHHHHc-----------CCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhcccc
Confidence 456677777766543 234577999999999999999999997721
Q ss_pred cEEEEeccchhhhhccchHHHHHHHHHHHH----hcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccC
Q 011305 269 TFFNISASSVVSKWRGDSEKLIKVLFELAR----HHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQS 344 (489)
Q Consensus 269 ~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~----~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~ 344 (489)
.++.+...+- .. .-....++.+..... .....|++|||+|.+... .++.|+..|+. .
T Consensus 75 ~~~~~~~~~~-~~--~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~-------------a~n~Llk~lEe---p 135 (207)
T d1a5ta2 75 DYYTLAPEKG-KN--TLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEE---P 135 (207)
T ss_dssp TEEEECCCTT-CS--SBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTS---C
T ss_pred ccchhhhhhc-cc--ccccchhhHHhhhhhhccccCccceEEechhhhhhhh-------------hhHHHHHHHHh---h
Confidence 1222221110 00 012233455554432 233469999999998533 56788898873 3
Q ss_pred CCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHh
Q 011305 345 DELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESL 389 (489)
Q Consensus 345 ~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~ 389 (489)
+.++.+|.+|++++.+.++++||+ ..+.|+.|+.++...+++..
T Consensus 136 ~~~~~fIl~t~~~~~ll~tI~SRc-~~i~~~~~~~~~~~~~L~~~ 179 (207)
T d1a5ta2 136 PAETWFFLATREPERLLATLRSRC-RLHYLAPPPEQYAVTWLSRE 179 (207)
T ss_dssp CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred cccceeeeeecChhhhhhhhccee-EEEecCCCCHHHHHHHHHHc
Confidence 456888999999999999999999 77999999999988888654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.44 E-value=1.4e-13 Score=139.03 Aligned_cols=179 Identities=21% Similarity=0.327 Sum_probs=114.5
Q ss_pred cccCcHHHHHHHHHHHHccccCchh------------------hcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKY------------------FTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~------------------~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
-|+||+++|+.+..++....++.+. ......|+.++||.||+|||||.+||++|+.++.+|+
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~i 97 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 97 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhccccee
Confidence 6999999999998777432211100 0112357789999999999999999999999999999
Q ss_pred EEeccchhh-hhccc-hHHHHHHHHHHH----HhcCCcEEEEchhhhHHhhhcccchhhH-HHHHHHHHHHHHhcCCcc-
Q 011305 272 NISASSVVS-KWRGD-SEKLIKVLFELA----RHHAPSTIFLDEIDAIISQRGEARSEHE-ASRRLKTELLIQMDGLTQ- 343 (489)
Q Consensus 272 ~v~~s~l~~-~~~g~-~~~~l~~lf~~A----~~~~p~VL~IDEiD~l~~~r~~~~~~~~-~~~~i~~~LL~~ldg~~~- 343 (489)
.++++++.. .|+|. ....+..+...+ +....+|+++||+|...+.........+ ....+++.||+.+++-..
T Consensus 98 r~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~~~~~ 177 (364)
T d1um8a_ 98 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 177 (364)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred ehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcCceec
Confidence 999998764 34443 234455554432 3445689999999998765432221111 234578889999985321
Q ss_pred ---------CCCcEEEEEEeCC-------------------------------------------------CCcccHHHH
Q 011305 344 ---------SDELVFVLAATNL-------------------------------------------------PWELDAAML 365 (489)
Q Consensus 344 ---------~~~~viVIatTn~-------------------------------------------------p~~Ld~al~ 365 (489)
...+.+++.|+|- +..+.|+++
T Consensus 178 ~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEf~ 257 (364)
T d1um8a_ 178 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 257 (364)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhhhHHHHH
Confidence 1123444444443 112668899
Q ss_pred hhcccccccCCCCHHHHHHHHHH
Q 011305 366 RRLEKRILVPLPDTEARRAMFES 388 (489)
Q Consensus 366 rRf~~~i~~~~Pd~~eR~~IL~~ 388 (489)
.|++..+.|...+.++..+|+..
T Consensus 258 gRi~~iv~f~~L~~~~l~~Il~~ 280 (364)
T d1um8a_ 258 GRLPVLSTLDSISLEAMVDILQK 280 (364)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHS
T ss_pred HHhcchhhHhhhhHHHHHHHHHH
Confidence 99999999999999999999874
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.33 E-value=1e-12 Score=133.50 Aligned_cols=166 Identities=20% Similarity=0.348 Sum_probs=107.4
Q ss_pred CCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----------CCcEEEEe
Q 011305 205 DVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----------KTTFFNIS 274 (489)
Q Consensus 205 ~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----------~~~~i~v~ 274 (489)
.-.++.++|.+...+++.+.+.. ....++||.||||+|||.+++.+|..+ +..++.++
T Consensus 18 ~g~ld~~~gr~~ei~~~~~~L~r------------~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld 85 (387)
T d1qvra2 18 EGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ 85 (387)
T ss_dssp TTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC
T ss_pred cCCCCCCcCcHHHHHHHHHHHhc------------CCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEee
Confidence 45688999999999999887643 233679999999999999999999865 56799999
Q ss_pred ccchhh--hhccchHHHHHHHHHHHHhcC-CcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEE
Q 011305 275 ASSVVS--KWRGDSEKLIKVLFELARHHA-PSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVL 351 (489)
Q Consensus 275 ~s~l~~--~~~g~~~~~l~~lf~~A~~~~-p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVI 351 (489)
.+.+.. +|.|+.+..+..++..+.... +.||||||++.+.+..+..+. .+ +.+-|.-.+. ++. +-+|
T Consensus 86 ~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfide~h~l~~~g~~~g~-~d----~a~~Lkp~L~----rg~-~~~I 155 (387)
T d1qvra2 86 MGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA-VD----AGNMLKPALA----RGE-LRLI 155 (387)
T ss_dssp C-----------CHHHHHHHHHHHHHTTCSSEEEEECCC------------------------HHHHH----TTC-CCEE
T ss_pred HhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEeccHHHHhcCCCCCCc-cc----HHHHHHHHHh----CCC-ccee
Confidence 999885 678999999999998887765 578999999999875432211 11 2222333332 333 4456
Q ss_pred EEeCCCC----cccHHHHhhcccccccCCCCHHHHHHHHHHhcCCC
Q 011305 352 AATNLPW----ELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQ 393 (489)
Q Consensus 352 atTn~p~----~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~ 393 (489)
++|..-+ .-|++|.||| ..|.++.|+.++-..||+.....+
T Consensus 156 ~~tT~~ey~~~e~d~al~rrF-~~v~v~ep~~~~~~~il~~~~~~~ 200 (387)
T d1qvra2 156 GATTLDEYREIEKDPALERRF-QPVYVDEPTVEETISILRGLKEKY 200 (387)
T ss_dssp EEECHHHHHHHTTCTTTCSCC-CCEEECCCCHHHHHHHHHHHHHHH
T ss_pred eecCHHHHHHhcccHHHHHhc-ccccCCCCcHHHHHHHHHHHHHHH
Confidence 6654211 2478999999 569999999999999999876443
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.33 E-value=3.2e-12 Score=122.17 Aligned_cols=211 Identities=20% Similarity=0.237 Sum_probs=127.3
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhhc---
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKWR--- 283 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~~--- 283 (489)
+.||.+.+.+.+.+.+.... ....+|||+|++|||||++|++++... ..+++.+++..+.....
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a----------~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~ 70 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKIS----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAE 70 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHT----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHH
T ss_pred CeEecCHHHHHHHHHHHHHh----------CCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHH
Confidence 46888888888887776532 234679999999999999999999876 46789999876532211
Q ss_pred --cch-------HHHHHHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCC--------ccCCC
Q 011305 284 --GDS-------EKLIKVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGL--------TQSDE 346 (489)
Q Consensus 284 --g~~-------~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~--------~~~~~ 346 (489)
|.. ......+++.+.. ++|||||+|.+... .+..|+..++.- .....
T Consensus 71 lfg~~~~~~~~~~~~~~g~l~~a~g---GtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~~~~~~~~~ 134 (247)
T d1ny5a2 71 LFGYEKGAFTGAVSSKEGFFELADG---GTLFLDEIGELSLE-------------AQAKLLRVIESGKFYRLGGRKEIEV 134 (247)
T ss_dssp HHCBCTTSSTTCCSCBCCHHHHTTT---SEEEEESGGGCCHH-------------HHHHHHHHHHHSEECCBTCCSBEEC
T ss_pred hcCcccCCcCCcccccCCHHHccCC---CEEEEeChHhCCHH-------------HHHHHHHHHHhCCEEECCCCCceec
Confidence 000 0000123444433 79999999998644 234455555311 11112
Q ss_pred cEEEEEEeCCCC-------cccHHHHhhcccccccCCCCHHHHH----HHHHHhcCCCCCCCCCCHHHHHHHhcCCcHHH
Q 011305 347 LVFVLAATNLPW-------ELDAAMLRRLEKRILVPLPDTEARR----AMFESLLPSQTGEESLPYDLLVERTEGYSGSD 415 (489)
Q Consensus 347 ~viVIatTn~p~-------~Ld~al~rRf~~~i~~~~Pd~~eR~----~IL~~~l~~~~~~~~~dl~~La~~t~G~sg~D 415 (489)
.+.+|++|+.+- .+++.+..|+.. +.+..|+..+|. .|+..++....... .....+++...
T Consensus 135 ~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~-------~~~~~~ls~~a 206 (247)
T d1ny5a2 135 NVRILAATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKY-------AKEVEGFTKSA 206 (247)
T ss_dssp CCEEEEEESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHT-------TCCCCEECHHH
T ss_pred CeEEEEecCCCHHHHHHcCCCcHHHHhhcCe-eeecCCChhhchhhHhhhhhhhhhhhhhhc-------CCCCCCCCHHH
Confidence 355677776642 366777777743 445566555554 44455543211110 01123567777
Q ss_pred HHHHHHHHHhHHHHHHHHHhhhhhccCCCCCCCCCCCCCHHHHHH
Q 011305 416 IRLVSKEAAMQPLRRLMVLLEGRQEVAPDDELPQIGPIRPEDVEI 460 (489)
Q Consensus 416 i~~l~~~A~~~a~rR~~~~le~~~~~~~~~~~~~~~~It~eDf~~ 460 (489)
+..|.+..|.++++++.+.++..-..++. ..|+.+|+-.
T Consensus 207 l~~L~~~~WPGNl~EL~~~l~~a~~~~~~------~~I~~~dl~~ 245 (247)
T d1ny5a2 207 QELLLSYPWYGNVRELKNVIERAVLFSEG------KFIDRGELSC 245 (247)
T ss_dssp HHHHHHSCCTTHHHHHHHHHHHHHHHCCS------SEECHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHhCCC------CeECHHHccc
Confidence 77788888888877777766655443322 3489999865
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.29 E-value=1.6e-11 Score=126.63 Aligned_cols=249 Identities=23% Similarity=0.288 Sum_probs=148.2
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcc--cCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh-hccc-
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTG--LLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK-WRGD- 285 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~--~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~-~~g~- 285 (489)
-|+||+++|+.|.-++..+.++-..-.. ..-.++||||.||||||||.+||.+|+.++.||+.++|+.+... |+|.
T Consensus 15 yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGYvG~D 94 (443)
T d1g41a_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 94 (443)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred cccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecceeecc
Confidence 5899999999999877554322211111 12235799999999999999999999999999999999887642 4332
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 011305 286 SEKLIKVLFELAR------------------------------------------------------------------- 298 (489)
Q Consensus 286 ~~~~l~~lf~~A~------------------------------------------------------------------- 298 (489)
.+..++.+...|.
T Consensus 95 Vesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~~~~~~~~ 174 (443)
T d1g41a_ 95 VDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEI 174 (443)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHSCC-------------------------------------------------------
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHHHHHHhcCCcccccccc
Confidence 2222222221110
Q ss_pred ------------------------------------------------------------------------hcCCcEEE
Q 011305 299 ------------------------------------------------------------------------HHAPSTIF 306 (489)
Q Consensus 299 ------------------------------------------------------------------------~~~p~VL~ 306 (489)
....+++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i~~~ai~~v~~~~~~~ 254 (443)
T d1g41a_ 175 DVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIVF 254 (443)
T ss_dssp --------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEEE
T ss_pred ccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHHHHHHHHHHhccCccc
Confidence 01124888
Q ss_pred EchhhhHHhhhcccchhhHHHHHHHHHHHHHhcCCcc-------CCCcEEEEEEeC----CCCcccHHHHhhcccccccC
Q 011305 307 LDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTQ-------SDELVFVLAATN----LPWELDAAMLRRLEKRILVP 375 (489)
Q Consensus 307 IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~-------~~~~viVIatTn----~p~~Ld~al~rRf~~~i~~~ 375 (489)
+||+|.........+.+ .....+...++..+++... ....++.|+++. .+..+-|.|.-||+..+.+.
T Consensus 255 ~dei~k~~~~~~~~g~d-~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v~L~ 333 (443)
T d1g41a_ 255 IDEIDKICKKGEYSGAD-VSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 333 (443)
T ss_dssp EETGGGGSCCSSCSSSH-HHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred cchhhhhhhcccCCCCC-cccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEEEcc
Confidence 99999887665433221 2223455667777765431 123355565543 23457799999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHhcC----CcHHHHHHHHHHHHhH-------HHHHHHHHhhhh----hc
Q 011305 376 LPDTEARRAMFESLLPSQTGEESLPYDLLVERTEG----YSGSDIRLVSKEAAMQ-------PLRRLMVLLEGR----QE 440 (489)
Q Consensus 376 ~Pd~~eR~~IL~~~l~~~~~~~~~dl~~La~~t~G----~sg~Di~~l~~~A~~~-------a~rR~~~~le~~----~~ 440 (489)
..+.++..+||..--.... .....+-+ +.| |+...++.+++.|... -+|++...++.. .-
T Consensus 334 ~L~~~dL~rILtEPknsLi----kQy~~lf~-~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f 408 (443)
T d1g41a_ 334 ALSAADFERILTEPHASLT----EQYKALMA-TEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISF 408 (443)
T ss_dssp CCCHHHHHHHHHSSTTCHH----HHHHHHHH-TTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHhhhhhHH----HHHHHHHh-hcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhc
Confidence 9999999998864210000 00000110 111 5667777777777642 134444444432 11
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHhhh
Q 011305 441 VAPDDELPQIGPIRPEDVEIALKNT 465 (489)
Q Consensus 441 ~~~~~~~~~~~~It~eDf~~AL~~~ 465 (489)
..|..... ...|+.+.+++.+..+
T Consensus 409 ~~p~~~~~-~v~Id~~~v~~~l~~~ 432 (443)
T d1g41a_ 409 SASDMNGQ-TVNIDAAYVADALGEV 432 (443)
T ss_dssp HGGGCTTC-EEEECHHHHHHHHTTT
T ss_pred cCCCCCCC-EEEECHHHHHhhhhch
Confidence 22322222 2348899998888543
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=4.1e-11 Score=110.61 Aligned_cols=117 Identities=11% Similarity=0.128 Sum_probs=85.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhC------CcEEEEeccchhhhhccchHHHHHHHHHHHHh----cCCcEEEEchh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECK------TTFFNISASSVVSKWRGDSEKLIKVLFELARH----HAPSTIFLDEI 310 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~------~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~----~~p~VL~IDEi 310 (489)
.+.++||+||||||||++|..+++... ..++.+.+..- -. .-..++.+...+.. ....|++|||+
T Consensus 14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~---~I--~Id~IR~i~~~~~~~~~~~~~KviIId~a 88 (198)
T d2gnoa2 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NI--GIDDIRTIKDFLNYSPELYTRKYVIVHDC 88 (198)
T ss_dssp SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CB--CHHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC---CC--CHHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence 357999999999999999999999773 24777765321 11 22345555555543 23359999999
Q ss_pred hhHHhhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCH
Q 011305 311 DAIISQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDT 379 (489)
Q Consensus 311 D~l~~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~ 379 (489)
|.+.. ..++.||..|+. .+..+++|.+|++++.+.++++||| ..+.++.|+.
T Consensus 89 d~l~~-------------~aqNaLLK~LEE---Pp~~t~fiLit~~~~~ll~TI~SRC-~~i~~~~p~~ 140 (198)
T d2gnoa2 89 ERMTQ-------------QAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTIKSRV-FRVVVNVPKE 140 (198)
T ss_dssp GGBCH-------------HHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCHH
T ss_pred cccch-------------hhhhHHHHHHhC---CCCCceeeeccCChhhCHHHHhcce-EEEeCCCchH
Confidence 99853 356789999973 3455778888999999999999999 5688887754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.01 E-value=3.1e-11 Score=114.77 Aligned_cols=68 Identities=24% Similarity=0.270 Sum_probs=51.2
Q ss_pred CCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 206 VKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 206 ~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
+.|++.-+.+.+.+.+.+..... . ....|+++||+||||||||++|+++|++++.+++.++++++...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~ 71 (273)
T d1gvnb_ 4 VNFTDKQFENRLNDNLEELIQGK-K-------AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 71 (273)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTC-C-------CCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred cccChHHHHHHHHHHHHHHHhcc-c-------CCCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHH
Confidence 34566655566666665543321 1 23557899999999999999999999999999999999887643
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.94 E-value=8.1e-09 Score=97.08 Aligned_cols=190 Identities=15% Similarity=0.108 Sum_probs=113.8
Q ss_pred CCCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhh
Q 011305 203 SPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKW 282 (489)
Q Consensus 203 ~~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~ 282 (489)
.|...-++++|.++..++|.+. ..+.++|+||+|+|||++++.++++++.++..+++.......
T Consensus 6 ~p~~~~~~f~GR~~el~~l~~~----------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~~~~ 69 (283)
T d2fnaa2 6 SPKDNRKDFFDREKEIEKLKGL----------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERN 69 (283)
T ss_dssp SCCCSGGGSCCCHHHHHHHHHT----------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCS
T ss_pred CCCCChhhCCChHHHHHHHHhc----------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEeccccccc
Confidence 3555678999999988887642 236899999999999999999999999988888764432211
Q ss_pred ccchHH----------------------------------------------HHHHHHHHH--HhcCCcEEEEchhhhHH
Q 011305 283 RGDSEK----------------------------------------------LIKVLFELA--RHHAPSTIFLDEIDAII 314 (489)
Q Consensus 283 ~g~~~~----------------------------------------------~l~~lf~~A--~~~~p~VL~IDEiD~l~ 314 (489)
...... .+..++... ....+.++++||++.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~ 149 (283)
T d2fnaa2 70 YISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELV 149 (283)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGG
T ss_pred cccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhcccccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhc
Confidence 100000 011222222 12456789999999886
Q ss_pred hhhcccchhhHHHHHHHHHHHHHhcCCccCCCcEEEEEEeCCCCcc---------cHHHHhhcccccccCCCCHHHHHHH
Q 011305 315 SQRGEARSEHEASRRLKTELLIQMDGLTQSDELVFVLAATNLPWEL---------DAAMLRRLEKRILVPLPDTEARRAM 385 (489)
Q Consensus 315 ~~r~~~~~~~~~~~~i~~~LL~~ldg~~~~~~~viVIatTn~p~~L---------d~al~rRf~~~i~~~~Pd~~eR~~I 385 (489)
...... +...+...++ ... .+..+.++.....+ ...+..|+...+.++..+.++..++
T Consensus 150 ~~~~~~---------~~~~l~~~~~---~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~ 216 (283)
T d2fnaa2 150 KLRGVN---------LLPALAYAYD---NLK-RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEF 216 (283)
T ss_dssp GCTTCC---------CHHHHHHHHH---HCT-TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHH
T ss_pred ccchHH---------HHHHHHHHHH---hhh-hhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHH
Confidence 543221 1122222222 112 23334333322111 1112224456788889999999999
Q ss_pred HHHhcCCCCCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Q 011305 386 FESLLPSQTGEESLPYDLLVERTEGYSGSDIRLVSKEA 423 (489)
Q Consensus 386 L~~~l~~~~~~~~~dl~~La~~t~G~sg~Di~~l~~~A 423 (489)
+...+....... .+++.+.+.+.|. |..+..++...
T Consensus 217 l~~~~~~~~~~~-~~~~~i~~~~~G~-P~~L~~~~~~~ 252 (283)
T d2fnaa2 217 LRRGFQEADIDF-KDYEVVYEKIGGI-PGWLTYFGFIY 252 (283)
T ss_dssp HHHHHHHHTCCC-CCHHHHHHHHCSC-HHHHHHHHHHH
T ss_pred HHhhhhhcCCCH-HHHHHHHHHhCCC-HHHHHHHHHHH
Confidence 988876555443 3467788888876 55666655433
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.37 E-value=1.2e-06 Score=76.86 Aligned_cols=26 Identities=35% Similarity=0.590 Sum_probs=23.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
.|+|.||||+|||||++.++..+..+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~ 27 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence 48999999999999999999988543
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=98.08 E-value=1.8e-06 Score=73.72 Aligned_cols=30 Identities=30% Similarity=0.750 Sum_probs=27.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
++|+|.|||||||||+|+.+|++++.+++.
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~id 32 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 32 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 579999999999999999999999999874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=98.05 E-value=9.6e-07 Score=77.23 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=33.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.+.|+|.|||||||||+|++||+.++.+++......+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~~~~ 44 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 44 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehHHHh
Confidence 37899999999999999999999999999877665543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.93 E-value=1.5e-05 Score=75.94 Aligned_cols=168 Identities=11% Similarity=0.011 Sum_probs=90.6
Q ss_pred cccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCc---EEEEeccchhh--
Q 011305 210 SIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATEC----KTT---FFNISASSVVS-- 280 (489)
Q Consensus 210 dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el----~~~---~i~v~~s~l~~-- 280 (489)
+++|.+.-++++.+.+..... .....|.|+|..|+|||++|+.++++. +.. .+.++.+....
T Consensus 21 ~~~gR~~~~~~i~~~L~~~~~---------~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~ 91 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEMCD---------LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKS 91 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHHTT---------SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTH
T ss_pred ceeCcHHHHHHHHHHHHhccC---------CCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHH
Confidence 578999999888887744211 123568899999999999999998874 211 22232211100
Q ss_pred ----h------------------hccchHHHH-HHHHHHHHhcCCcEEEEchhhhHHhhhcccchhhHHHHHHHHHHHHH
Q 011305 281 ----K------------------WRGDSEKLI-KVLFELARHHAPSTIFLDEIDAIISQRGEARSEHEASRRLKTELLIQ 337 (489)
Q Consensus 281 ----~------------------~~g~~~~~l-~~lf~~A~~~~p~VL~IDEiD~l~~~r~~~~~~~~~~~~i~~~LL~~ 337 (489)
. ......... ..........++++|+||+++.... . ..
T Consensus 92 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~---------------~----~~ 152 (277)
T d2a5yb3 92 TFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEET---------------I----RW 152 (277)
T ss_dssp HHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHH---------------H----HH
T ss_pred HHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhh---------------h----hh
Confidence 0 001111122 2223333345568999999964310 0 11
Q ss_pred hcCCccCCCcEEEEEEeCCCCcccHHHHhhcccccccCCCCHHHHHHHHHHhcCCCCCCCC-CC-HHHHHHHhcCCc
Q 011305 338 MDGLTQSDELVFVLAATNLPWELDAAMLRRLEKRILVPLPDTEARRAMFESLLPSQTGEES-LP-YDLLVERTEGYS 412 (489)
Q Consensus 338 ldg~~~~~~~viVIatTn~p~~Ld~al~rRf~~~i~~~~Pd~~eR~~IL~~~l~~~~~~~~-~d-l~~La~~t~G~s 412 (489)
+. ..+. .||.||....... .+..+. ..+.+...+.++-.++|..+....+.... .+ ...+++.+.|..
T Consensus 153 ~~---~~~s--rilvTTR~~~v~~-~~~~~~-~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlP 222 (277)
T d2a5yb3 153 AQ---ELRL--RCLVTTRDVEISN-AASQTC-EFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNP 222 (277)
T ss_dssp HH---HTTC--EEEEEESBGGGGG-GCCSCE-EEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCH
T ss_pred hc---ccCc--eEEEEeehHHHHH-hcCCCC-ceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCH
Confidence 11 1122 2455666543222 222222 34678889999999999876543332211 11 355777777753
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.90 E-value=2.5e-06 Score=74.31 Aligned_cols=37 Identities=27% Similarity=0.375 Sum_probs=33.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
++-|+|.|||||||||+|++++++++.+++.++...+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~ 40 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 40 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence 3568999999999999999999999999999987554
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.89 E-value=2.8e-06 Score=73.71 Aligned_cols=31 Identities=42% Similarity=0.727 Sum_probs=28.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
..++|.|||||||||+|+.||+.++.+++.+
T Consensus 5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~ 35 (173)
T d1rkba_ 5 PNILLTGTPGVGKTTLGKELASKSGLKYINV 35 (173)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence 4688999999999999999999999998753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.85 E-value=9.8e-06 Score=70.72 Aligned_cols=32 Identities=34% Similarity=0.601 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
++++|.|+||+||||+++.+|+.+|.+|+..+
T Consensus 1 k~I~liG~~GsGKsTi~k~La~~l~~~~~d~d 32 (161)
T d1viaa_ 1 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32 (161)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence 46899999999999999999999999999654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.76 E-value=1e-05 Score=70.03 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
+-|+|+||||+||||+|++|+++++.+++.++..
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d 37 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecc
Confidence 5789999999999999999999999998887653
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.74 E-value=6.9e-06 Score=72.13 Aligned_cols=31 Identities=23% Similarity=0.440 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
++++|.|+|||||||+++.+|+.+|.+|+..
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~ 33 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence 5688999999999999999999999998853
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.69 E-value=1.2e-05 Score=69.70 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEe
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNIS 274 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~ 274 (489)
++-++|.|||||||||+|+.+++.++.+++..+
T Consensus 6 ~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d 38 (171)
T d1knqa_ 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38 (171)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence 456889999999999999999999998776543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.68 E-value=0.00011 Score=67.45 Aligned_cols=79 Identities=19% Similarity=0.221 Sum_probs=54.7
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhhh----------------------------ccch
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSKW----------------------------RGDS 286 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~~----------------------------~g~~ 286 (489)
+++++.-++|+||||+|||+++..+|... +.+.++++..+-...+ ....
T Consensus 22 Gi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a2 22 GFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGL 101 (242)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCH
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCCHHHHHHHHHHcCCChHHHhhcCceEEEEeecchhhH
Confidence 45667789999999999999999999886 5566666542211100 0123
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 287 EKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 287 ~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
...+..+........|.+++||.++.+...
T Consensus 102 ~~~~~~i~~~i~~~~~~~vviDs~~~~~~~ 131 (242)
T d1tf7a2 102 EDHLQIIKSEINDFKPARIAIDSLSALARG 131 (242)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECHHHHTSS
T ss_pred HHHHHHHHHHHHhcCCceeeeecchhhhcC
Confidence 334555566667788899999999988654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.65 E-value=1.1e-05 Score=70.52 Aligned_cols=30 Identities=23% Similarity=0.515 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++|.|+||+||||+++.+|+.++.+|+..
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l~~~fiD~ 32 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 32 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence 366779999999999999999999999853
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.64 E-value=1.8e-05 Score=68.63 Aligned_cols=29 Identities=41% Similarity=0.549 Sum_probs=25.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
++.+|+|.||||+||||+++.||+.++..
T Consensus 4 k~~~I~i~G~~GsGKTT~~~~La~~l~~~ 32 (174)
T d1y63a_ 4 KGINILITGTPGTGKTSMAEMIAAELDGF 32 (174)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 44679999999999999999999998753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.62 E-value=1.7e-05 Score=68.19 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
+-++|.|||||||||+|+.++++++..++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~~~~ 31 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAY 31 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 45899999999999999999999987654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=1.5e-05 Score=69.22 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
++|+|+||||||||+++++++..+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHH
Confidence 689999999999999999999987
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.54 E-value=2.9e-05 Score=69.20 Aligned_cols=38 Identities=21% Similarity=0.364 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
+.|.-|+|.||||+||||+|+.||+.+|.+.+ +..++.
T Consensus 4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i--~~g~~~ 41 (194)
T d1qf9a_ 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL--SAGDLL 41 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHCCceE--chhhHH
Confidence 34567899999999999999999999987554 444443
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.49 E-value=2.5e-05 Score=69.47 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=30.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
|..|+|.|||||||||+|+.||+.+|.+.+ +..++..
T Consensus 3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~i--s~~~~~~ 39 (189)
T d1zaka1 3 PLKVMISGAPASGKGTQCELIKTKYQLAHI--SAGDLLR 39 (189)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEEC--CHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHCCcEE--ehhHHHH
Confidence 457999999999999999999999988764 4445443
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=97.48 E-value=4.1e-05 Score=68.04 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
+..++|.|||||||||+|+.||+++|.+++ +..++.
T Consensus 3 ~~riil~G~pGSGKsT~a~~La~~~g~~~i--~~gdll 38 (190)
T d1ak2a1 3 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHL--ATGDML 38 (190)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEE--EHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCeEE--eHHHHH
Confidence 345778999999999999999999987654 444554
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.45 E-value=4.1e-05 Score=67.13 Aligned_cols=34 Identities=21% Similarity=0.453 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.|+|.|||||||||+|+.||+++|.+++. ..++.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~--~~~ll 35 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIS--TGDMF 35 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE--HHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceec--hhHHH
Confidence 48899999999999999999999887664 44444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.43 E-value=3.8e-05 Score=66.36 Aligned_cols=27 Identities=26% Similarity=0.280 Sum_probs=23.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
+..|+|+|+||+||||+|++||+.++.
T Consensus 6 g~~I~l~G~~GsGKTTia~~La~~L~~ 32 (183)
T d1m8pa3 6 GFTIFLTGYMNSGKDAIARALQVTLNQ 32 (183)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356889999999999999999999853
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.37 E-value=4.4e-05 Score=67.27 Aligned_cols=30 Identities=33% Similarity=0.543 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNI 273 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v 273 (489)
.++|.|||||||||+|+.||+.+|...+.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~ 31 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 31 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence 588999999999999999999998876543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.37 E-value=0.0004 Score=63.27 Aligned_cols=74 Identities=18% Similarity=0.174 Sum_probs=49.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh--------------------hccchHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFEL 296 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~--------------------~~g~~~~~l~~lf~~ 296 (489)
..|.-++|.||+|+||||.+--+|..+ +..+..+.+...... ...+....+......
T Consensus 7 ~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~ 86 (211)
T d2qy9a2 7 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 86 (211)
T ss_dssp CTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHH
Confidence 345678899999999999998888766 566666655333211 112344555666666
Q ss_pred HHhcCCcEEEEchhhhH
Q 011305 297 ARHHAPSTIFLDEIDAI 313 (489)
Q Consensus 297 A~~~~p~VL~IDEiD~l 313 (489)
++.....+|+||=....
T Consensus 87 a~~~~~d~ilIDTaGr~ 103 (211)
T d2qy9a2 87 AKARNIDVLIADTAGRL 103 (211)
T ss_dssp HHHTTCSEEEECCCCCG
T ss_pred HHHcCCCEEEeccCCCc
Confidence 66666689999976543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.35 E-value=0.00013 Score=64.29 Aligned_cols=63 Identities=13% Similarity=0.179 Sum_probs=39.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
+.|.-|++.|+|||||||+|+.++...+.. .++..++.. ...+......+.... ..+++|...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~~~~~--~i~~D~~~~------~~~~~~~~~~~l~~g-~~vIiD~t~ 74 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYV--HVNRDTLGS------WQRCVSSCQAALRQG-KRVVIDNTN 74 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGGGTCE--EEEHHHHCS------HHHHHHHHHHHHHTT-CCEEEESCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCCE--EEchHHHHH------HHHHHHHHHHHHHCC-CCceeeCcC
Confidence 445678999999999999999999887754 455444422 122233333333333 356677554
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=7.7e-05 Score=66.52 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.-++|.|||||||||+|+.||+.+|.+.+ +..++.
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~~i--s~gdl~ 43 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFVHL--SAGDLL 43 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEE--EHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEE--ehhHHH
Confidence 45888999999999999999999988654 444443
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.33 E-value=0.00025 Score=63.10 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
|.-|+++|.||+||||+|++||+.+ +.+...++...
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~ 40 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQ 40 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccc
Confidence 3458899999999999999999987 45555565543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.32 E-value=7.4e-05 Score=63.28 Aligned_cols=35 Identities=34% Similarity=0.557 Sum_probs=26.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
+-|+|+||||+||||+|+.++.+.. .+..++..++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~ 37 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence 4578999999999999999977653 3555555444
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.30 E-value=7.7e-05 Score=66.52 Aligned_cols=38 Identities=24% Similarity=0.392 Sum_probs=30.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSK 281 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~ 281 (489)
++-|+|.|||||||||+|+.||+.+|.+. ++..++...
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~--is~g~llr~ 45 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTH--LSTGDLLRA 45 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCCEE--EEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCee--EeccHHHHH
Confidence 46799999999999999999999998755 455565443
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.29 E-value=8.5e-05 Score=65.95 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=28.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.-|+|.||||+||||+|+.||+.+|... ++..++.
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~g~~~--i~~g~ll 36 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKYGYTH--LSAGELL 36 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEE--EEHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCce--EcHHHHH
Confidence 4689999999999999999999998654 4555554
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.29 E-value=7.8e-05 Score=65.72 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.|+|.|||||||||+|+.||+.+|.+.+.
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is 30 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKYGTPHIS 30 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCceee
Confidence 47899999999999999999999887664
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.28 E-value=7.8e-05 Score=65.73 Aligned_cols=34 Identities=24% Similarity=0.551 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
.++|.|||||||||+|+.||+++|.+.+ +..++.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~~i--~~~d~~ 37 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAAHL--ATGDML 37 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceE--eccccc
Confidence 4788899999999999999999987655 444444
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.27 E-value=2.2e-05 Score=69.41 Aligned_cols=28 Identities=25% Similarity=0.226 Sum_probs=24.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
+..|+|+|+||+||||+|+.||..++.+
T Consensus 19 g~vI~L~G~pGSGKTTiAk~La~~l~~~ 46 (195)
T d1x6va3 19 GCTVWLTGLSGAGKTTVSMALEEYLVCH 46 (195)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4567899999999999999999998543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.25 E-value=7.3e-05 Score=66.86 Aligned_cols=36 Identities=17% Similarity=0.428 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVS 280 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~ 280 (489)
..++|.||||+||||+|+.||+.+|.++ ++..++..
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~g~~~--is~gdllr 42 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHFELKH--LSSGDLLR 42 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHBCCEE--EEHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHHHH
Confidence 4688889999999999999999998765 45555543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=0.00011 Score=64.51 Aligned_cols=29 Identities=24% Similarity=0.374 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.++|.|||||||||+|+.||+.++.+++.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~ 30 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS 30 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 47889999999999999999999876554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=97.19 E-value=0.00067 Score=60.89 Aligned_cols=79 Identities=16% Similarity=0.153 Sum_probs=51.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchhhhh-------------------------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVVSKW------------------------------- 282 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~~~~------------------------------- 282 (489)
+.+++.-++|+|+||+|||+++..++... +..+++++..+-....
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGKLFILDASPDPEG 101 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTSEEEEECCCCSSC
T ss_pred CCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCCHHHHHHHHHHcCCChHHHHHhcchhhhhhccchhh
Confidence 45677889999999999999997765432 5566666643211000
Q ss_pred -----ccchHHHHHHHHHHHHhcCCcEEEEchhhhHHhh
Q 011305 283 -----RGDSEKLIKVLFELARHHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 283 -----~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~~ 316 (489)
.......+..+........|.+++||.++.+...
T Consensus 102 ~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~ 140 (242)
T d1tf7a1 102 QEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ 140 (242)
T ss_dssp CSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred hhhhccccHHHHHHHHHHHHHhhccchhhhhHHHHHHHh
Confidence 0012233445555566778899999999888654
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=97.17 E-value=0.00094 Score=55.56 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
.+..+|.+|+|+|||+++-.++.+.+..++.+...
T Consensus 8 ~~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~ 42 (136)
T d1a1va1 8 FQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPS 42 (136)
T ss_dssp CEEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESC
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcCh
Confidence 35789999999999999977777777776666553
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=97.17 E-value=0.00079 Score=61.08 Aligned_cols=73 Identities=15% Similarity=0.237 Sum_probs=44.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh-------h-------------ccchHHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK-------W-------------RGDSEKLIKVLFELA 297 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~-------~-------------~g~~~~~l~~lf~~A 297 (489)
.++.++|.||+|+||||.+--+|..+ |..+..+++...... | ..+....+......+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~~~ 84 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALAYDAVQAM 84 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHHHHHHHHH
Confidence 34678999999999999988888766 555555554332110 0 012233344434444
Q ss_pred HhcCCcEEEEchhhhH
Q 011305 298 RHHAPSTIFLDEIDAI 313 (489)
Q Consensus 298 ~~~~p~VL~IDEiD~l 313 (489)
+.....+|+||=....
T Consensus 85 ~~~~~d~ilIDTaGr~ 100 (207)
T d1okkd2 85 KARGYDLLFVDTAGRL 100 (207)
T ss_dssp HHHTCSEEEECCCCCC
T ss_pred HHCCCCEEEcCccccc
Confidence 4445589999977543
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00015 Score=65.24 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=28.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
-|.+.|||||||+|+|+.||+++|.++ ++..++.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~--iStGdLl 38 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHL--LDSGAIY 38 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEE--EEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcE--ECHHHHH
Confidence 577889999999999999999998766 5555554
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.12 E-value=0.00022 Score=64.29 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
.+..+.++|+|||+||||++|.++++-++..++.
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis 83 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 83 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence 3445789999999999999999999999765443
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=97.12 E-value=0.00056 Score=64.39 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=53.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh----------------hccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK----------------WRGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~----------------~~g~~~~~l~~lf~~A~ 298 (489)
+.+.++-+.|+||||+|||+++-.++... +..+++++...-... .....+..+..+-...+
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~ 129 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 129 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHh
Confidence 34566779999999999999999888766 677788876432111 01223444443334445
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
...+.+++||-+..+.+.
T Consensus 130 ~~~~~liViDSi~al~~~ 147 (263)
T d1u94a1 130 SGAVDVIVVDSVAALTPK 147 (263)
T ss_dssp HTCCSEEEEECGGGCCCH
T ss_pred cCCCCEEEEECccccccc
Confidence 567789999999888643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=97.10 E-value=0.00053 Score=68.47 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=63.9
Q ss_pred CCCCCccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEec-cchh
Q 011305 204 PDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECK---TTFFNISA-SSVV 279 (489)
Q Consensus 204 ~~~~~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~---~~~i~v~~-s~l~ 279 (489)
+..+++++.-.+...+.+++++.. +..-+|+.||+|+||||+..++.++++ .+++.+-- .+..
T Consensus 133 ~~~~l~~LG~~~~~~~~l~~l~~~-------------~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~ 199 (401)
T d1p9ra_ 133 TRLDLHSLGMTAHNHDNFRRLIKR-------------PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFD 199 (401)
T ss_dssp TCCCGGGSCCCHHHHHHHHHHHTS-------------SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSC
T ss_pred cchhhhhhcccHHHHHHHHHHHhh-------------hhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccc
Confidence 445688887778888888876533 234588999999999999999999874 44554421 1211
Q ss_pred hh------hccchHHHHHHHHHHHHhcCCcEEEEchhhh
Q 011305 280 SK------WRGDSEKLIKVLFELARHHAPSTIFLDEIDA 312 (489)
Q Consensus 280 ~~------~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD~ 312 (489)
-. ..+............+....|.||+|.|+-.
T Consensus 200 ~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiRd 238 (401)
T d1p9ra_ 200 IDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRD 238 (401)
T ss_dssp CSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCS
T ss_pred cCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcCC
Confidence 00 0111112245566677788999999999943
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=97.10 E-value=0.00015 Score=65.43 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccch
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSV 278 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l 278 (489)
|.+-|||||||||+|+.||+++|.+++ +..++
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~~i--stGdl 37 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFTYL--DTGAM 37 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCEEE--EHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEE--CHHHH
Confidence 456799999999999999999998754 44444
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=97.05 E-value=0.00079 Score=61.35 Aligned_cols=36 Identities=28% Similarity=0.265 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
.+|.-++|.||+|+||||.+--+|..+ +..+..+++
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~ 47 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 47 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEee
Confidence 345678999999999999988888765 555555544
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.97 E-value=0.001 Score=60.53 Aligned_cols=72 Identities=21% Similarity=0.047 Sum_probs=40.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhhh--------------------hccchHHHHHHHHHH
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVSK--------------------WRGDSEKLIKVLFEL 296 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~~--------------------~~g~~~~~l~~lf~~ 296 (489)
..|.-++|.||+|+||||.+--+|..+ +..+..+++...... ...+....+......
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~a~~~ 89 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 89 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhhhHHHHHHHHH
Confidence 345678899999999999988777765 455555554322110 112233344444455
Q ss_pred HHhcCCcEEEEchhh
Q 011305 297 ARHHAPSTIFLDEID 311 (489)
Q Consensus 297 A~~~~p~VL~IDEiD 311 (489)
++.....+|+||=..
T Consensus 90 ~~~~~~d~IlIDTaG 104 (211)
T d1j8yf2 90 FLSEKMEIIIVDTAG 104 (211)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred hhccCCceEEEecCC
Confidence 555566899999553
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.94 E-value=0.0015 Score=61.53 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=53.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchhh-hh---------------ccchHHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVVS-KW---------------RGDSEKLIKVLFELARH 299 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~~-~~---------------~g~~~~~l~~lf~~A~~ 299 (489)
++.++-+.++||+|||||++|..++... |..+++++...-.. .+ ....+..+..+-...+.
T Consensus 54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~ 133 (268)
T d1xp8a1 54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS 133 (268)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTT
T ss_pred ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhc
Confidence 4556778999999999999999887765 67788887643221 11 11234443333333344
Q ss_pred cCCcEEEEchhhhHHhhh
Q 011305 300 HAPSTIFLDEIDAIISQR 317 (489)
Q Consensus 300 ~~p~VL~IDEiD~l~~~r 317 (489)
..+.+|+||-+..+.+..
T Consensus 134 ~~~~liIiDSi~al~~r~ 151 (268)
T d1xp8a1 134 GAIDVVVVDSVAALTPRA 151 (268)
T ss_dssp TCCSEEEEECTTTCCCST
T ss_pred CCCcEEEEecccccccHH
Confidence 567899999999988643
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.92 E-value=0.0011 Score=59.68 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=48.4
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---------CCcEEEEeccchhhh-h-------c-----------------
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---------KTTFFNISASSVVSK-W-------R----------------- 283 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---------~~~~i~v~~s~l~~~-~-------~----------------- 283 (489)
+.++++.++|+||||||||+++-.++... +.+.++++...-... . .
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 109 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHHHHHTCCCHHHHGGGEEEEECC
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHHHHhcCCchhhhhcceEEEecc
Confidence 45667789999999999999999887543 455666654321100 0 0
Q ss_pred --cchHHHHHHHHHHHHhcCCcEEEEchhhhHHh
Q 011305 284 --GDSEKLIKVLFELARHHAPSTIFLDEIDAIIS 315 (489)
Q Consensus 284 --g~~~~~l~~lf~~A~~~~p~VL~IDEiD~l~~ 315 (489)
..................+.++++|.+..+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~ 143 (251)
T d1szpa2 110 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 143 (251)
T ss_dssp STTTHHHHHHHTHHHHHHSCEEEEEEETGGGGGS
T ss_pred chhHHHHHHHHHHHHhhccccceeeehhhhhhhh
Confidence 11122233344445556667888898877754
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.92 E-value=0.00092 Score=54.86 Aligned_cols=22 Identities=32% Similarity=0.156 Sum_probs=18.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAr 260 (489)
...+..++|.+|+|+|||..+-
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~ 25 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFL 25 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHH
T ss_pred HHcCCcEEEEcCCCCChhHHHH
Confidence 3456889999999999996663
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.87 E-value=0.0026 Score=57.47 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
++-++|.||+|+||||.+--+|..+ +..+..+++.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~D 47 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 47 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecc
Confidence 3457889999999999998888766 5666656553
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.86 E-value=0.00032 Score=60.59 Aligned_cols=25 Identities=24% Similarity=0.438 Sum_probs=22.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+-|+|.|+|||||||+++.+++.++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999874
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.00046 Score=58.90 Aligned_cols=31 Identities=26% Similarity=0.099 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.+.|+|++|||||||++.+++++ |..+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~ 37 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK 37 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEec
Confidence 57899999999999999999986 55554443
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.81 E-value=0.00078 Score=65.27 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=46.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC--CcEEEE-eccchhhh-------hccchHHHHHHHHHHHHhcCCcEEEEchh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK--TTFFNI-SASSVVSK-------WRGDSEKLIKVLFELARHHAPSTIFLDEI 310 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~--~~~i~v-~~s~l~~~-------~~g~~~~~l~~lf~~A~~~~p~VL~IDEi 310 (489)
.+++|+.||+|+||||+.++++.... ..++.+ +..++.-. ..+...-....++..+....|..|++.|+
T Consensus 166 ~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR~~pd~iivgEi 244 (323)
T d1g6oa_ 166 GKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGEL 244 (323)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEESCC
T ss_pred CCCEEEEeeccccchHHHHHHhhhcccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhccCCCcccCCcc
Confidence 36899999999999999999999873 344444 22232110 01111223456677788899999999999
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.71 E-value=0.00058 Score=61.89 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=33.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEeccchh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISASSVV 279 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~s~l~ 279 (489)
..+..|+|+|.||+||||+|+++++.+ +.+++.+++..+.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 345679999999999999999999866 6788888876654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.69 E-value=0.003 Score=58.74 Aligned_cols=37 Identities=14% Similarity=0.054 Sum_probs=29.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh----CCcEEEEec
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC----KTTFFNISA 275 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el----~~~~i~v~~ 275 (489)
..++.-++|.|+||+|||+++..+|..+ +.++..++.
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~ 72 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeee
Confidence 4566678999999999999998887543 677777764
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.0044 Score=56.01 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=25.6
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++.+++.-++|+||||||||+++..++...
T Consensus 32 GGip~G~~~~i~G~~GsGKT~lalq~~~~~ 61 (258)
T d1v5wa_ 32 GGIESMAITEAFGEFRTGKTQLSHTLCVTA 61 (258)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 346777889999999999999999998754
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.65 E-value=0.0043 Score=60.68 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=17.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
+-++|+||||||||+++..+..
T Consensus 164 ~~~vI~G~pGTGKTt~i~~~l~ 185 (359)
T d1w36d1 164 RISVISGGPGTGKTTTVAKLLA 185 (359)
T ss_dssp SEEEEECCTTSTHHHHHHHHHH
T ss_pred CeEEEEcCCCCCceehHHHHHH
Confidence 4689999999999998865543
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=96.64 E-value=0.0038 Score=57.67 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=24.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+-|.||+|+|||||++.++..+
T Consensus 26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~ 53 (241)
T d2pmka1 26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY 53 (241)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 4566789999999999999999999866
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.59 E-value=0.0021 Score=60.48 Aligned_cols=79 Identities=20% Similarity=0.303 Sum_probs=51.9
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccchh-hhh---------------ccchHHHHHHHHHHHH
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSVV-SKW---------------RGDSEKLIKVLFELAR 298 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l~-~~~---------------~g~~~~~l~~lf~~A~ 298 (489)
+.+.++-+.|+||+|||||++|-.++... +...++++...-. ..+ ....+..+..+-...+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~~~~~~~l~~ 135 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45666789999999999999997776654 7778888764322 111 1123333332222334
Q ss_pred hcCCcEEEEchhhhHHhh
Q 011305 299 HHAPSTIFLDEIDAIISQ 316 (489)
Q Consensus 299 ~~~p~VL~IDEiD~l~~~ 316 (489)
...+++|+||-+..+.+.
T Consensus 136 ~~~~~liIiDSi~al~~~ 153 (269)
T d1mo6a1 136 SGALDIVVIDSVAALVPR 153 (269)
T ss_dssp TTCEEEEEEECSTTCCCH
T ss_pred cCCCCEEEEecccccccH
Confidence 556789999999988864
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.53 E-value=0.0008 Score=58.25 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=25.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC---CcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK---TTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~---~~~i~v~ 274 (489)
+-++|.|+||+||||+++.+++.++ ..+..++
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~ 36 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3578999999999999999999884 3444444
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.42 E-value=0.0073 Score=55.42 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+.++|+||..+|||++.|+++-..
T Consensus 41 ~~~~iiTGpN~~GKSt~lk~i~l~~ 65 (234)
T d1wb9a2 41 RRMLIITGPNMGGKSTYMRQTALIA 65 (234)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEeccCchhhHHHHHHHHHHH
Confidence 3678999999999999999998744
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.27 E-value=0.0013 Score=58.31 Aligned_cols=28 Identities=36% Similarity=0.562 Sum_probs=24.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.|+|.||+|+|||++++.++++....+.
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~~~ 29 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSIFG 29 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTTEE
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCcee
Confidence 4899999999999999999998865543
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=96.26 E-value=0.003 Score=59.31 Aligned_cols=57 Identities=26% Similarity=0.305 Sum_probs=38.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchhhhhccchHHHHHHHHHHHHhcCCcEEEEchhh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~~~~~g~~~~~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
+....++|+||++||||+++.++++.+|.. ..++-+. + -|..+......++++||.+
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~-~~~~~~~--~------------~f~l~~l~~k~~~~~~e~~ 158 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPFY-GCVNWTN--E------------NFPFNDCVDKMVIWWEEGK 158 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSCE-EECCTTC--S------------SCTTGGGSSCSEEEECSCC
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHHhcch-hhccccC--C------------CccccccCCCEEEEEeCCC
Confidence 344678999999999999999999999653 2222111 0 1223333344689999985
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.26 E-value=0.0014 Score=57.78 Aligned_cols=28 Identities=39% Similarity=0.691 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTF 270 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~ 270 (489)
+.|+|.||+|+|||++++.++++....+
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~ 29 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcce
Confidence 4599999999999999999999875443
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=96.20 E-value=0.011 Score=54.93 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+-|.||+|+|||||++.++..+
T Consensus 38 i~~Ge~iaivG~sGsGKSTLl~ll~gl~ 65 (253)
T d3b60a1 38 IPAGKTVALVGRSGSGKSTIASLITRFY 65 (253)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 4666789999999999999999998865
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0013 Score=57.56 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=25.9
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++.+++.-++|+||||+|||+++..+|...
T Consensus 18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 18 GGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 346677889999999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.13 E-value=0.0029 Score=54.94 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-|-|.||+|+||||+|+.|+..++
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 355999999999999999998774
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.10 E-value=0.0086 Score=55.67 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=24.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+.|.||+|+|||||++.++...
T Consensus 41 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 68 (255)
T d2hyda1 41 IEKGETVAFVGMSGGGKSTLINLIPRFY 68 (255)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHhcC
Confidence 4666789999999999999999998755
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.022 Score=52.26 Aligned_cols=37 Identities=27% Similarity=0.319 Sum_probs=28.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh-------------CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC-------------KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el-------------~~~~i~v~~s~ 277 (489)
+..-.+|+|+||+|||+++-.+|..+ +.++++++..+
T Consensus 28 pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~ 77 (274)
T d1nlfa_ 28 AGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED 77 (274)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc
Confidence 45678999999999999999988764 23577776543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.80 E-value=0.0022 Score=58.28 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=25.5
Q ss_pred ccCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 237 GLLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 237 ~~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
++.+++.-++|+||||||||+++-.++...
T Consensus 31 GGlp~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 31 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346677789999999999999999998764
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.73 E-value=0.003 Score=55.08 Aligned_cols=26 Identities=19% Similarity=0.414 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~ 267 (489)
++-++|.||+|+||||+++.+.++..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998874
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.59 E-value=0.021 Score=51.79 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++|+||..+|||++.|.++-..
T Consensus 36 ~~~iiTGpN~~GKSt~lk~i~l~~ 59 (224)
T d1ewqa2 36 ELVLITGPNMAGKSTFLRQTALIA 59 (224)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCccccchhhhhhHHHH
Confidence 358999999999999999998744
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.58 E-value=0.0058 Score=52.24 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=25.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
-+-+.|++|||||||+..++.++ |..+..+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~ 37 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 37 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 45699999999999999999887 556655543
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.51 E-value=0.0075 Score=54.79 Aligned_cols=34 Identities=21% Similarity=0.212 Sum_probs=24.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
++++++.+|+|+|||+++-..+... +...+.+..
T Consensus 58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P 94 (237)
T d1gkub1 58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP 94 (237)
T ss_dssp TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence 3689999999999998766555433 455555544
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.44 E-value=0.0042 Score=55.38 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
--|-|.||+||||||+|+.+++.++.+
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 346689999999999999999998643
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.26 E-value=0.0045 Score=55.39 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=25.0
Q ss_pred cCCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 238 LLSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 238 ~~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.+++.-++|.|+||+|||+++-.+|...
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35566789999999999999999999765
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.15 E-value=0.05 Score=47.68 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
++|+|.|+||+|||+|..++...
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 47999999999999999999873
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.022 Score=47.68 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|+|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.09 E-value=0.04 Score=48.34 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.4
Q ss_pred CceEEEEcCCCCcHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAr 260 (489)
.+++++.+|+|+|||+++-
T Consensus 40 ~~~~il~apTGsGKT~~a~ 58 (202)
T d2p6ra3 40 GKNLLLAMPTAAGKTLLAE 58 (202)
T ss_dssp CSCEEEECSSHHHHHHHHH
T ss_pred CCCEEEEcCCCCchhHHHH
Confidence 3679999999999998864
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=95.01 E-value=0.0086 Score=51.58 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
++--|+|.|+=|+|||+++|.+++.+|.+
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~ 60 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ 60 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence 34458899999999999999999999754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.94 E-value=0.0092 Score=52.33 Aligned_cols=31 Identities=23% Similarity=0.321 Sum_probs=25.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
..++|||.|++|+|||++|-++... |..++.
T Consensus 13 ~g~gvl~~G~sG~GKStlal~l~~~-g~~lv~ 43 (176)
T d1kkma_ 13 YGLGVLITGDSGVGKSETALELVQR-GHRLIA 43 (176)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHT-TCEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEEe
Confidence 3579999999999999999888875 666553
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.92 E-value=0.037 Score=48.25 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
..|+|.|+||+|||+|..++.+.-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998753
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.82 E-value=0.044 Score=46.20 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|+|.|++|+|||+|+..+...
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5889999999999999999764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.79 E-value=0.0091 Score=52.20 Aligned_cols=24 Identities=25% Similarity=0.558 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++|.||+|+||+++++.+.++.
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 569999999999999999999875
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.74 E-value=0.012 Score=51.21 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=23.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
--|-|+|++||||||+|+.+ ++.|.+++.
T Consensus 4 ~IIgitG~~gSGKstva~~l-~~~g~~~~~ 32 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALL-RSWGYPVLD 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH-HHTTCCEEE
T ss_pred EEEEEECCCCCCHHHHHHHH-HHCCCeEEE
Confidence 34568999999999999998 567877653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.69 E-value=0.068 Score=51.14 Aligned_cols=70 Identities=17% Similarity=0.260 Sum_probs=43.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---C--CcEEEEeccchhh----------------------------hhccchHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---K--TTFFNISASSVVS----------------------------KWRGDSEK 288 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~--~~~i~v~~s~l~~----------------------------~~~g~~~~ 288 (489)
...|=++||||+|||||+.+++..+ | .-++.++.+.-.+ ...|....
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~~~ 133 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGASQ 133 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccchh
Confidence 3557899999999999999998866 2 3345555432110 11234445
Q ss_pred HHHHHHHHHHhcCCcEEEEchhh
Q 011305 289 LIKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 289 ~l~~lf~~A~~~~p~VL~IDEiD 311 (489)
..............++++|+-+.
T Consensus 134 ~~~~~~~~~~~~g~d~iliEtvG 156 (327)
T d2p67a1 134 RARELMLLCEAAGYDVVIVETVG 156 (327)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC
T ss_pred hhhHHHHHHHhcCCCeEEEeecc
Confidence 55566666666667888888773
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.63 E-value=0.031 Score=53.21 Aligned_cols=39 Identities=15% Similarity=0.055 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHhC-----CcEEEEeccch
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATECK-----TTFFNISASSV 278 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el~-----~~~i~v~~s~l 278 (489)
..|--|-|.|++|+||||+|+.++..+. ..+..++..++
T Consensus 78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F 121 (308)
T d1sq5a_ 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence 3345677999999999999999999873 45666676655
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.56 E-value=0.014 Score=52.36 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=24.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh--CCcEEEEe
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC--KTTFFNIS 274 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el--~~~~i~v~ 274 (489)
+++.|++|+|||||.+++.+.+ +.....|+
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn 34 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 34 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence 7899999999999999998766 34455554
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.47 E-value=0.01 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
.|+|.|+||+|||+|++.+...-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999997643
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.35 E-value=0.012 Score=51.58 Aligned_cols=31 Identities=29% Similarity=0.381 Sum_probs=25.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFFN 272 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i~ 272 (489)
...+|||.||+|+|||++|-.+... |..++.
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~~-G~~lva 44 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLINK-NHLFVG 44 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT-TCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCceec
Confidence 4579999999999999999888754 665543
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.33 E-value=0.086 Score=50.28 Aligned_cols=69 Identities=17% Similarity=0.233 Sum_probs=43.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh-----CCcEEEEeccchhhh----------------------------hccchHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC-----KTTFFNISASSVVSK----------------------------WRGDSEKL 289 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el-----~~~~i~v~~s~l~~~----------------------------~~g~~~~~ 289 (489)
.-|=|.||||+|||||...++..+ ..-++.++.+.-.+. ..|.....
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~~~~ 131 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAK 131 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccchhHH
Confidence 457799999999999999999865 334566655332210 01223344
Q ss_pred HHHHHHHHHhcCCcEEEEchhh
Q 011305 290 IKVLFELARHHAPSTIFLDEID 311 (489)
Q Consensus 290 l~~lf~~A~~~~p~VL~IDEiD 311 (489)
.............+++||+-+.
T Consensus 132 ~~~~i~~~~~~g~d~iiiETVG 153 (323)
T d2qm8a1 132 TRETMLLCEAAGFDVILVETVG 153 (323)
T ss_dssp HHHHHHHHHHTTCCEEEEEECS
T ss_pred HHHHHHhhccCCCCeEEEeehh
Confidence 4555555555556888888773
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=94.30 E-value=0.015 Score=50.52 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
...+|||.|++|+|||++|-++.+. |..++
T Consensus 14 ~g~gvli~G~sg~GKS~la~~l~~~-g~~li 43 (169)
T d1ko7a2 14 YGVGVLITGDSGIGKSETALELIKR-GHRLV 43 (169)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence 3579999999999999999887776 55443
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.21 E-value=0.01 Score=51.92 Aligned_cols=31 Identities=19% Similarity=0.155 Sum_probs=25.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
.|.-|.|.|+.|+||||+++.|++.++...+
T Consensus 8 kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~ 38 (197)
T d2vp4a1 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICL 38 (197)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGGTTTEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3456889999999999999999999876444
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.20 E-value=0.014 Score=52.31 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
+-++|.||+|+|||+|.+.+.+...
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999999864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.023 Score=50.81 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEe
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNIS 274 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~ 274 (489)
.-|.|.|+.|+||||+++.+++.+ |.+++.+.
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~ 38 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 38 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 346677999999999999999977 66666654
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.14 E-value=0.025 Score=53.26 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh------CCcEEEEeccch
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC------KTTFFNISASSV 278 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el------~~~~i~v~~s~l 278 (489)
|--|-|.|++||||||++..|...+ +..+..++..++
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence 3445589999999999999887765 345666666555
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.04 E-value=0.17 Score=46.77 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
.+..-||+|..|||||.++-..+... |..+..+-..+
T Consensus 103 ~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~ 142 (264)
T d1gm5a3 103 KPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTS 142 (264)
T ss_dssp SCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCH
T ss_pred CcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehH
Confidence 34678999999999999987766543 66666655543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.98 E-value=0.035 Score=47.16 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
..|++.|+||+|||+|+..+..
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999998854
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.92 E-value=0.046 Score=46.49 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
.-.|++.|+||+|||++++.+...
T Consensus 12 ~~kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 12 EMRILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp CEEEEEEEETTSSHHHHHHHTTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999998753
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=93.88 E-value=0.046 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|+|.|.||+|||+|+..+...
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.88 E-value=0.024 Score=49.65 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 245 ILLFGPPGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
|.|.|+.|+||||+++.|++.+ |.+++.+..
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~ 36 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence 6788999999999999999976 667766543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.87 E-value=0.044 Score=46.86 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|.|.|.+|+|||+|++++...
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999864
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=93.50 E-value=0.019 Score=53.34 Aligned_cols=17 Identities=29% Similarity=0.450 Sum_probs=14.8
Q ss_pred ceEEEEcCCCCcHHHHH
Q 011305 243 KGILLFGPPGTGKTMLA 259 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lA 259 (489)
.++|+.|+||||||+++
T Consensus 15 ~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SEEEECCCTTSCHHHHH
T ss_pred CCEEEEeeCCccHHHHH
Confidence 56899999999999864
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.47 E-value=0.072 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~e 265 (489)
...|+|.|.||+|||++..+|..+
T Consensus 32 ~l~I~LvG~tg~GKSSliN~ilg~ 55 (257)
T d1h65a_ 32 SLTILVMGKGGVGKSSTVNSIIGE 55 (257)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CcEEEEECCCCCcHHHHHHHHhCC
Confidence 367999999999999999999864
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=93.42 E-value=0.019 Score=50.95 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
|-|+|++||||||+++.+. +.|.+++. +.++.
T Consensus 5 IgITG~igSGKStv~~~l~-~~G~~vid--aD~i~ 36 (205)
T d1jjva_ 5 VGLTGGIGSGKTTIANLFT-DLGVPLVD--ADVVA 36 (205)
T ss_dssp EEEECSTTSCHHHHHHHHH-TTTCCEEE--HHHHH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCeEEE--chHHH
Confidence 4589999999999999885 67887764 44443
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.40 E-value=0.027 Score=50.00 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=25.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccchh
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISASSVV 279 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~l~ 279 (489)
-|-|+|++||||||+++.+. ++|.+++ ++..+.
T Consensus 5 iIgitG~igSGKStv~~~l~-~~G~~vi--daD~i~ 37 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFA-DLGINVI--DADIIA 37 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHH-HTTCEEE--EHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHH-HCCCcEE--EchHHH
Confidence 35689999999999999875 7787655 444443
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.37 E-value=0.023 Score=50.24 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
+-|.|.|+.|+||||+++.+++.+
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 457889999999999999999877
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.022 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-++|.|+||+|||+|+..+...
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.033 Score=50.04 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEE
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFF 271 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i 271 (489)
|+-+.|.|+-||||||+++.+++.++...+
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 467899999999999999999999865443
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.10 E-value=0.024 Score=47.99 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=20.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~ 264 (489)
...-|+|.|+||+|||+|..++..
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 345699999999999999999855
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.09 E-value=0.024 Score=51.74 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+-|.||+|+|||||.+.++.-.
T Consensus 23 i~~Gei~~liGpsGsGKSTLl~~i~Gl~ 50 (232)
T d2awna2 23 IHEGEFVVFVGPSGCGKSTLLRMIAGLE 50 (232)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 4556678999999999999999998855
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.09 E-value=0.031 Score=46.51 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|+|.|+||+|||+|.+++...
T Consensus 6 ~kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 6 MRILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 45899999999999999999774
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.09 E-value=0.021 Score=52.16 Aligned_cols=28 Identities=18% Similarity=0.381 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
...+..+-|.||+|||||||.+.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~gl~ 55 (230)
T d1l2ta_ 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (230)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCcchhhHhccCCC
Confidence 4556679999999999999999998754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.99 E-value=0.046 Score=48.80 Aligned_cols=34 Identities=24% Similarity=0.124 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
++-|.|.|+-|+||||+++.+++.+......+..
T Consensus 3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~ 36 (214)
T d1tmka_ 3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF 36 (214)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEES
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEE
Confidence 3457889999999999999999999776665543
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=92.90 E-value=0.018 Score=51.32 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+.|.||.|+|||||.+.++..+
T Consensus 24 i~~Gei~~l~G~NGsGKSTLl~~i~gl~ 51 (200)
T d1sgwa_ 24 IEKGNVVNFHGPNGIGKTTLLKTISTYL 51 (200)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhccc
Confidence 3555678899999999999999999865
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=92.75 E-value=0.03 Score=52.49 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=15.2
Q ss_pred ceEEEEcCCCCcHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAK 260 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAr 260 (489)
.++++.|+||||||+++-
T Consensus 25 g~~lV~g~aGSGKTt~l~ 42 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVLT 42 (318)
T ss_dssp SCEEEEECTTSCHHHHHH
T ss_pred CCEEEEecCCccHHHHHH
Confidence 569999999999997653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.69 E-value=0.026 Score=50.85 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=25.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCCcEEEEecc
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKTTFFNISAS 276 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~~~i~v~~s 276 (489)
-|-|+|+.||||||+|+.+++.+|. ..++++
T Consensus 3 iIgiTG~igSGKsTva~~l~e~~g~--~~i~~a 33 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMSNYSA--VKYQLA 33 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCE--EECCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC--eEEccc
Confidence 4779999999999999999998775 444433
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=92.65 E-value=0.025 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.341 Sum_probs=24.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+-|.||+|+|||||++.++..+
T Consensus 25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~ 52 (242)
T d1mv5a_ 25 AQPNSIIAFAGPSGGGKSTIFSLLERFY 52 (242)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4666789999999999999999998855
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=92.64 E-value=0.024 Score=52.04 Aligned_cols=28 Identities=21% Similarity=0.249 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
...+.-+-|.||+|+||||+++.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~ 55 (240)
T d3dhwc1 28 VPAGQIYGVIGASGAGKSTLIRCVNLLE 55 (240)
T ss_dssp ECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 3455678999999999999999998755
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.60 E-value=0.028 Score=47.40 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|+|.|++|+|||+|++.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~ 25 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGE 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHcCC
Confidence 5899999999999999998763
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.026 Score=52.10 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++..+-|.||+|+|||||++.++..+
T Consensus 37 i~~Ge~vaivG~sGsGKSTLl~li~gl~ 64 (251)
T d1jj7a_ 37 LRPGEVTALVGPNGSGKSTVAALLQNLY 64 (251)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhccc
Confidence 4666789999999999999999998765
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.59 E-value=0.031 Score=47.71 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-+++.|++|+|||+|+..+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 3889999999999999998764
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.54 E-value=0.032 Score=51.12 Aligned_cols=28 Identities=29% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++.-+-|.||+|+||||+.+.++...
T Consensus 29 v~~Ge~~~liGpsGaGKSTLl~~i~Gl~ 56 (239)
T d1v43a3 29 IKDGEFLVLLGPSGCGKTTTLRMIAGLE 56 (239)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4555678999999999999999999866
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=92.49 E-value=0.028 Score=51.58 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.++.-+-|.||+|+||||+++.++...
T Consensus 27 ~~Ge~~~liG~sGaGKSTll~~i~gl~ 53 (240)
T d1g2912 27 KDGEFMILLGPSGCGKTTTLRMIAGLE 53 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 455678899999999999999999865
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.44 E-value=0.031 Score=52.47 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++..+-|.||+|+|||||++.++..+
T Consensus 59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~ 86 (281)
T d1r0wa_ 59 IEKGEMLAITGSTGSGKTSLLMLILGEL 86 (281)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5667789999999999999999999866
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.34 E-value=0.031 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.574 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
-+.|.||+|+||||+.+.++..+
T Consensus 26 ~~~liGpnGaGKSTll~~i~Gl~ 48 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 45588999999999999999866
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=92.33 E-value=0.035 Score=51.38 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCCCceEEEEcCCCCcHHH
Q 011305 239 LSPWKGILLFGPPGTGKTM 257 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~ 257 (489)
....+.+|+.+|+|+|||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4566889999999999995
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.24 E-value=0.037 Score=52.12 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=25.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccch
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC---KTTFFNISASSV 278 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~l 278 (489)
-|-+.|++|+||||+++++.+.+ +.....+...++
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence 47799999999999999998876 566666776655
|
| >d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=92.22 E-value=0.071 Score=49.02 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=31.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 240 SPWKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 240 ~~~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
..++-+++.|.-|+||||++-++|..+ |.++..|++.
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D 45 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD 45 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456788999999999999999998877 7888888764
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=92.18 E-value=0.029 Score=51.08 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+-|.||+|+||||+.+.++.-.
T Consensus 23 i~~Ge~~~liGpsGaGKSTll~~l~Gl~ 50 (229)
T d3d31a2 23 VESGEYFVILGPTGAGKTLFLELIAGFH 50 (229)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence 3455678999999999999999999865
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.16 E-value=0.038 Score=46.61 Aligned_cols=21 Identities=14% Similarity=0.351 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|+|.|+||+|||+|+..+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998886
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.04 Score=46.57 Aligned_cols=22 Identities=23% Similarity=0.460 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|++|+|||+|++.+...
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999998863
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.053 Score=53.08 Aligned_cols=35 Identities=23% Similarity=0.372 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
.+|+++.|++|+|||++++.+..++ +.+++.++..
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~k 87 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 87 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3799999999999999988776654 7777777653
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.99 E-value=0.041 Score=46.73 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3899999999999999999864
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.97 E-value=0.025 Score=51.93 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=24.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++..+-|.||+|+||||+++.++.-.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTll~~i~gl~ 55 (242)
T d1oxxk2 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (242)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 4556779999999999999999999854
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.042 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|++|+|||+|+..+...
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.80 E-value=0.041 Score=46.72 Aligned_cols=22 Identities=36% Similarity=0.603 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-++|.|++|+|||+|++.+.+.
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999999873
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.75 E-value=0.042 Score=46.62 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.|.|.|+||+|||+|++++..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999975
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.044 Score=47.20 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|+|.|++|+|||+|++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 388999999999999999875
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.049 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|++.+...
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999874
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.05 Score=46.43 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.+++.|++|+|||+|++.+...
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999998763
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.44 E-value=0.033 Score=49.74 Aligned_cols=26 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
+-|.|.|+.|+||||+++.+++.+..
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~ 28 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCED 28 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 56889999999999999999998854
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=91.42 E-value=0.043 Score=50.82 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
..++.-+-|.||+|+||||++++++.-.
T Consensus 25 i~~GEi~~iiG~sGsGKSTLl~~i~Gl~ 52 (258)
T d1b0ua_ 25 ARAGDVISIIGSSGSGKSTFLRCINFLE 52 (258)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence 4555678999999999999999998754
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.052 Score=45.88 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|+|.|.+|+|||+|++.+..
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999876
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.36 E-value=0.052 Score=46.00 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999863
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.35 E-value=0.049 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|.+|+|||+|++.+...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4999999999999999998763
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=91.30 E-value=0.55 Score=42.32 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEeccc
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC---KTTFFNISASS 277 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s~ 277 (489)
+...||+|.+|+|||.++-..+... |..++.+-+..
T Consensus 76 ~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~ 114 (233)
T d2eyqa3 76 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 114 (233)
T ss_dssp CCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred ccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHH
Confidence 4679999999999999987766554 66766665543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.21 E-value=0.052 Score=45.74 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-+++.|++|+|||+|++.+...
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3889999999999999998874
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.20 E-value=0.055 Score=45.39 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999999863
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.11 E-value=0.052 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|+|.|+||+|||+|..++.++
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999753
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.06 E-value=0.058 Score=45.75 Aligned_cols=21 Identities=29% Similarity=0.575 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-+++.|++|+|||+|+..+..
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 388999999999999999875
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.056 Score=45.62 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998874
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.97 E-value=0.059 Score=46.29 Aligned_cols=21 Identities=29% Similarity=0.585 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|++.|.+|+|||+|+..+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999886
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=90.93 E-value=0.18 Score=44.24 Aligned_cols=33 Identities=30% Similarity=0.311 Sum_probs=27.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~~i~v~~ 275 (489)
.+.++.+|+|+|||.++-.++.+++.+.+.+-.
T Consensus 86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p 118 (206)
T d2fz4a1 86 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP 118 (206)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred CCcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence 345788999999999999999999877766654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.91 E-value=0.058 Score=45.64 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|++.|.+|+|||+|+..+..
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998876
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.059 Score=45.43 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
.-|+|.|++|+|||+|++.+...
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 45899999999999999998763
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.80 E-value=0.059 Score=45.89 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|.+|+|||+|++.+...
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4999999999999999998763
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.063 Score=45.03 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~ 264 (489)
|++.|.+|+|||+|++.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999999886
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.071 Score=45.09 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-+++.|++|+|||++++.+...
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3899999999999999998763
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.45 E-value=0.067 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
+-|++.|++|+|||+|+..+...
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35889999999999999998874
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.068 Score=45.35 Aligned_cols=21 Identities=33% Similarity=0.550 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|++.|.+|+|||+|++.+..
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999999876
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.33 E-value=0.075 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|.+|+|||+|++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998864
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.27 E-value=0.075 Score=45.32 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|++.|++|+|||+|++.+..
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999999876
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.26 E-value=0.076 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|+|.|.+|+|||+|++.+.+
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999999876
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=90.26 E-value=0.21 Score=41.44 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=23.8
Q ss_pred EEEEcCCCCcHHH-HHHHHHH--HhCCcEEEEecc
Q 011305 245 ILLFGPPGTGKTM-LAKAVAT--ECKTTFFNISAS 276 (489)
Q Consensus 245 vLL~GppGtGKT~-lAralA~--el~~~~i~v~~s 276 (489)
-+++||-.+|||+ |.+.+-+ ..+.+++.++..
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~ 39 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK 39 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence 4789999999999 6666633 447787777654
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.25 E-value=0.076 Score=44.98 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~ 264 (489)
.-|++.|++|+|||+|++.+..
T Consensus 5 ~KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 4589999999999999999876
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.25 E-value=0.063 Score=45.46 Aligned_cols=21 Identities=43% Similarity=0.805 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 011305 245 ILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~e 265 (489)
|++.|++|+|||+|++.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~ 24 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGV 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCcCHHHHHHHHhCC
Confidence 789999999999999998653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.23 E-value=0.076 Score=45.11 Aligned_cols=22 Identities=32% Similarity=0.569 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999888763
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.80 E-value=0.42 Score=44.56 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 241 PWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 241 ~~~~vLL~GppGtGKT~lAralA~el 266 (489)
.+..++|.|++|+|||+++..+++..
T Consensus 42 rGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 42 RGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp TTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 44679999999999999999999855
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.78 E-value=0.088 Score=44.43 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999988763
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=89.70 E-value=0.064 Score=48.99 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++.-+-|.||.|+||||+.++++..+
T Consensus 29 i~~Gei~~liGpnGaGKSTl~~~i~Gl~ 56 (240)
T d1ji0a_ 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3455678899999999999999999866
|
| >d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Dethiobiotin synthetase species: Escherichia coli [TaxId: 562]
Probab=89.70 E-value=0.14 Score=44.33 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=28.0
Q ss_pred ceEEEEcC-CCCcHHHHHHHHHHHh---CCcEEEEec
Q 011305 243 KGILLFGP-PGTGKTMLAKAVATEC---KTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~Gp-pGtGKT~lAralA~el---~~~~i~v~~ 275 (489)
+.++++|- +|+|||+++-.+|..+ |..+..++.
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~ 38 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence 56899999 5999999999999877 778888774
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.69 E-value=0.29 Score=43.59 Aligned_cols=24 Identities=38% Similarity=0.407 Sum_probs=21.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-.+|+|.-|+||||+.+.+.+..
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~~ 27 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNEQ 27 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred CEEEEeeCCCCCHHHHHHHHHhcC
Confidence 357899999999999999998864
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=89.69 E-value=0.076 Score=45.93 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.|.|.|+||+|||||..++.+
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 599999999999999999974
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.62 E-value=0.085 Score=44.83 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|+|.|++|+|||+|++.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~ 25 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAG 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998875
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.57 E-value=0.092 Score=45.00 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-+++.|.+|+|||+|++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998774
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.56 E-value=0.086 Score=45.77 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhhC
Confidence 3889999999999999998863
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=89.51 E-value=0.059 Score=46.14 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=19.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
.-.|++.|++|+|||+|++.+..
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999998753
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.46 E-value=0.095 Score=44.39 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
--+++.|++|+|||+|+..+...
T Consensus 5 ~Ki~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 5 YKLVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 35889999999999999998873
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.32 E-value=0.093 Score=45.02 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|++|+|||+|++.+.+.
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4799999999999999988873
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=89.18 E-value=0.17 Score=43.66 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH----hCCcEEEEec
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE----CKTTFFNISA 275 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e----l~~~~i~v~~ 275 (489)
+++|+.+|+|+|||.++-.++.. .+..++.+.+
T Consensus 24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P 60 (200)
T d1wp9a1 24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP 60 (200)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence 46899999999999876655543 3555655544
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=89.09 E-value=0.09 Score=47.93 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++.-+-|.||.|+|||||.+.++..+
T Consensus 25 v~~Gei~glvG~nGaGKSTLl~~l~G~~ 52 (238)
T d1vpla_ 25 IEEGEIFGLIGPNGAGKTTTLRIISTLI 52 (238)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3555667899999999999999999876
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.04 E-value=0.061 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=8.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
-|++.|.+|+|||+|++.+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999988875
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.97 E-value=0.084 Score=47.75 Aligned_cols=27 Identities=30% Similarity=0.318 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhCCc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECKTT 269 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~~~ 269 (489)
+..+|.|++|+|||+|+.++.......
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~ 122 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLR 122 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhh
Confidence 578999999999999999997655443
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.97 E-value=0.1 Score=44.93 Aligned_cols=22 Identities=27% Similarity=0.375 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|.+|+|||+|++.+.+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 4899999999999999998763
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.70 E-value=0.11 Score=44.92 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|++|+|||+|+..+...
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999888764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.56 E-value=0.086 Score=48.48 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=23.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~el 266 (489)
+.++.-+-|.||.|+|||||++.++...
T Consensus 27 v~~Gei~~liG~nGaGKSTLl~~i~Gl~ 54 (254)
T d1g6ha_ 27 VNKGDVTLIIGPNGSGKSTLINVITGFL 54 (254)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence 3455668899999999999999999865
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.42 E-value=0.059 Score=45.82 Aligned_cols=22 Identities=41% Similarity=0.545 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|++.|++|+|||+|+..+...
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987653
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=88.23 E-value=0.11 Score=43.92 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|.|.|.||+|||+|..++.+.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999753
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.087 Score=47.74 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=22.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 011305 239 LSPWKGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 239 ~~~~~~vLL~GppGtGKT~lAralA~e 265 (489)
..++.-+-|.||.|+||||+.+.++..
T Consensus 22 I~~Gei~~iiG~nGaGKSTLl~~l~Gl 48 (231)
T d1l7vc_ 22 VRAGEILHLVGPNGAGKSTLLARMAGM 48 (231)
T ss_dssp EETTCEEECBCCTTSSHHHHHHHHHTS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345567889999999999999999873
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.80 E-value=0.054 Score=45.06 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
.|.|.|.||+|||+|+.++..+
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999875
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.048 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.239 Sum_probs=21.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
-.+|+||.|+|||++..||.-.++
T Consensus 26 ~tvi~G~NGsGKStil~Ai~~~L~ 49 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAAFVTALI 49 (222)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 467899999999999999998763
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.12 Score=43.59 Aligned_cols=23 Identities=13% Similarity=0.199 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 011305 242 WKGILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~ 264 (489)
...|.|.|+|++|||+|..++..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~ 38 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTN 38 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35699999999999999999854
|
| >d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Arsenite-translocating ATPase ArsA species: Escherichia coli [TaxId: 562]
Probab=87.40 E-value=0.3 Score=44.32 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+-+++.|.-|+||||++-.+|..+ |..++.|++.
T Consensus 21 ~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D 57 (279)
T d1ihua2 21 GLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD 57 (279)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 457788999999999988777765 7888888775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.35 E-value=0.14 Score=43.95 Aligned_cols=19 Identities=37% Similarity=0.614 Sum_probs=17.9
Q ss_pred eEEEEcCCCCcHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAV 262 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAral 262 (489)
-|+|.|.+|+|||+|++.+
T Consensus 4 KivllG~~~vGKTsll~r~ 22 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQM 22 (200)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4899999999999999998
|
| >d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU species: Salmonella typhimurium [TaxId: 90371]
Probab=87.10 E-value=0.54 Score=40.67 Aligned_cols=32 Identities=28% Similarity=0.408 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 245 ILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 245 vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
+|+.|+..+|||..|..++... .+.++|-.+.
T Consensus 2 iLVtGGarSGKS~~AE~l~~~~-~~~~YiAT~~ 33 (180)
T d1c9ka_ 2 ILVTGGARSGKSRHAEALIGDA-PQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSC-SSEEEEECCC
T ss_pred EEEECCCCccHHHHHHHHHhcC-CCcEEEEccC
Confidence 6899999999999999998654 4556665443
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=86.88 E-value=0.16 Score=43.12 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|.|.|.+|+|||+|+.++...
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999763
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=86.87 E-value=0.12 Score=44.07 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.|-|.|+||+|||+|..++.+
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~ 23 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSS 23 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEE
T ss_pred eEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999854
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=86.33 E-value=0.13 Score=43.83 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
.|.|.|.||+|||+|+.++.+
T Consensus 3 ~VaivG~~nvGKSTLin~L~~ 23 (180)
T d1udxa2 3 DVGLVGYPNAGKSSLLAAMTR 23 (180)
T ss_dssp SEEEECCGGGCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 488999999999999999965
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=85.18 E-value=0.072 Score=48.38 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=20.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el~~ 268 (489)
++..+|.|++|+|||+|+.++..+...
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~ 123 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGL 123 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----
T ss_pred cceEEEECCCCccHHHHHHhhccHhHh
Confidence 356778899999999999999765543
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.17 E-value=0.21 Score=44.39 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el 266 (489)
.-|||.|++|+|||++++.+...-
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~ 30 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILH 30 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 459999999999999999986543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.76 E-value=0.2 Score=47.91 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 243 KGILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el~ 267 (489)
.-|.|-|+-|+||||+++.+++.++
T Consensus 7 ~rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 7 VRIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEEECCccCCHHHHHHHHHHHhc
Confidence 3578899999999999999999884
|
| >d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Nitrogenase iron protein species: Clostridium pasteurianum [TaxId: 1501]
Probab=84.37 E-value=0.42 Score=43.19 Aligned_cols=34 Identities=15% Similarity=0.404 Sum_probs=28.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHh---CCcEEEEecc
Q 011305 243 KGILLFGPPGTGKTMLAKAVATEC---KTTFFNISAS 276 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~el---~~~~i~v~~s 276 (489)
+.|-++|.=|+||||+|-.+|..+ |.++..|++.
T Consensus 2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D 38 (269)
T d1cp2a_ 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence 456789999999999999888876 7888888874
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.27 E-value=0.26 Score=41.89 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
-|++.|..|+|||++++.+...-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999997654
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.21 E-value=0.28 Score=41.81 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 011305 243 KGILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 243 ~~vLL~GppGtGKT~lAralA~e 265 (489)
-.|++.|++|+|||+|+..+...
T Consensus 6 ~ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 6 LRLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999988774
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.80 E-value=0.32 Score=46.47 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECK 267 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~ 267 (489)
--+|+||.|+|||++..||+-.+|
T Consensus 27 l~~i~G~NGsGKS~ileAi~~~lg 50 (427)
T d1w1wa_ 27 FTSIIGPNGSGKSNMMDAISFVLG 50 (427)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 357999999999999999986654
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=82.72 E-value=0.23 Score=45.71 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHh
Q 011305 244 GILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el 266 (489)
-.+|+||.|+|||++..|++-.+
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWVF 48 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHTS
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 45899999999999999997654
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.55 E-value=0.27 Score=46.83 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=22.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHhCC
Q 011305 244 GILLFGPPGTGKTMLAKAVATECKT 268 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~el~~ 268 (489)
-|.|-|+-|+||||+++.+++.++.
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3778999999999999999998853
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=82.28 E-value=0.76 Score=38.83 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVAT 264 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~ 264 (489)
+|-+.|.|++|||||..++.+
T Consensus 7 nIaiiG~~naGKSTL~n~L~~ 27 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTE 27 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 688999999999999999975
|
| >d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=82.07 E-value=1.3 Score=43.25 Aligned_cols=57 Identities=23% Similarity=0.247 Sum_probs=44.2
Q ss_pred CccccCcHHHHHHHHHHHHccccCchhhcccCCCCceEEEEcCCCCcHHHHHHHHHHHhCCcEEEEeccc
Q 011305 208 WESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECKTTFFNISASS 277 (489)
Q Consensus 208 ~~dliG~e~~k~~L~e~v~~~l~~~~~~~~~~~~~~~vLL~GppGtGKT~lAralA~el~~~~i~v~~s~ 277 (489)
|..=+-+..+.++|.+.+.. ..+..+|.|-+|||||.++.+++++.+.|++.|..+.
T Consensus 10 ~~p~gDQP~aI~~l~~~l~~-------------g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~ 66 (413)
T d1t5la1 10 YEPQGDQPQAIAKLVDGLRR-------------GVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK 66 (413)
T ss_dssp SCCCTTHHHHHHHHHHHHHH-------------TCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSH
T ss_pred CCCCCCCHHHHHHHHHHHhc-------------CCCcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeCCH
Confidence 44555566677777766643 1257899999999999999999999999999887643
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.66 E-value=0.36 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 011305 244 GILLFGPPGTGKTMLAKAVATE 265 (489)
Q Consensus 244 ~vLL~GppGtGKT~lAralA~e 265 (489)
-|+|.|..|+|||++++.+-..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~ 25 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKII 25 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999988653
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.42 E-value=2.3 Score=39.04 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHh
Q 011305 242 WKGILLFGPPGTGKTMLAKAVATEC 266 (489)
Q Consensus 242 ~~~vLL~GppGtGKT~lAralA~el 266 (489)
+..++|.|++|+|||+|+..+++..
T Consensus 68 GQr~~If~~~g~GKt~l~~~i~~~~ 92 (276)
T d2jdid3 68 GGKIGLFGGAGVGKTVLIMELINNV 92 (276)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999998764
|