Citrus Sinensis ID: 011308

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQQ
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccHHHHcccccHHHHHHHHHHHHHHHHcccccHHHccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccHHHHEHHEHHHHHHHHHccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHcHHHEHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEcHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccEEEcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccc
Coil and Loop (DISEMBL)
mrgrhgdvswmykrasskdvddeygkeettirmpnglgkdignppwsrslPHVLVAIISSFLFGYHLGVVNETLESIsldlgfsgstmaEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVsevspayvrgaygsstQIAACLGILVALFVglpakeilGWWRICFWVATIPAAFLALFMEFCAEsphwlfkrgrgaEAEAELERLFGGLHVKYSMAElsksergdeadavkfselisprnfgvVFIGSTLFALQQLSGINAVFYFSSTvfknagvpsdsgniCVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSlgagpvpslllseifPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQQ
Flexible Loop (DISEMBL)
mrgrhgdvswmykrasskdvddeygkeettirmpnglgkdIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQQ
Low Complexity Region (SEG)
MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKrgrgaeaeaelerlfgglHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAatsfvsssgalslslggmllfvltFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGllflrlleqlgplILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQQ
Disordered region (IsUnstruct)
*******************************************PPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM**************VKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETK***************
Disordered Region (DISOPRED)
************************************************SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYS********************LISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL****
Disordered Region (DISEMBL)
********SWMYKRA***********EETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAE*********ADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQQ
Disordered Region (DISPRO)
******************************************NPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALL***
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	489	2.2.26 [Sep-21-2011]
Q2V4B9	495	Probable plastidic glucos	yes	no	0.983	0.971	0.718	0.0
Q9FYG3	493	Probable plastidic glucos	no	no	0.997	0.989	0.672	0.0
Q56ZZ7	546	Plastidic glucose transpo	no	no	0.944	0.846	0.447	1e-102
Q0WVE9	524	Probable plastidic glucos	no	no	0.948	0.885	0.406	4e-98
Q93YP9	488	Sugar transporter ERD6-li	no	no	0.865	0.866	0.337	9e-50
P15729	468	Glucose transport protein	N/A	no	0.858	0.897	0.313	1e-49
C0SPB2	457	Putative metabolite trans	yes	no	0.854	0.914	0.311	2e-49
Q9FRL3	487	Sugar transporter ERD6-li	no	no	0.869	0.872	0.331	8e-49
P47842	495	Solute carrier family 2,	yes	no	0.881	0.870	0.315	3e-48
Q3ECP7	470	Sugar transporter ERD6-li	no	no	0.865	0.9	0.317	1e-47

>sp|Q2V4B9|PLST3_ARATH Probable plastidic glucose transporter 3 OS=Arabidopsis thaliana GN=At1g79820 PE=2 SV=2

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/486 (71%), Positives = 411/486 (84%), Gaps = 5/486 (1%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           MRGRH D     KR  SK+      K ET +R+P G GKD GNP W RSLPHVLVA ++S
Sbjct: 11  MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
            LFGYHLGVVNETLESIS+DLGFSG+T+AEGLVVSTCLGGAF+GS+FSG +ADG+GRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQL ALPMI+GAS+SA T++L GMLLGR  VG GMGIGP+V ALYV+EVSPAYVRG YGS
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
           STQIA C+G+L +LF G+PAK+ LGWWRICFW++T+PAA LA+FME C ESP WLFKRGR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
            AEAEA  E+L GG +VK +MAEL KS+RGD+AD+ K SEL+  R+F VVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINAVFYFSSTVFK AGVPS S NICVG+ NL GS +A++LMDKLGR+VLL+GSF G
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA+++G+QAIA TS  S  G L LS+GGMLLFVL+F+ GAGPVPSLLLSEI P R+RA A
Sbjct: 366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATA 425

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           +AVC+AVHWVINFFVGLLFLR+LEQLG ++L  IFG FC +AVI+V++NV+ETKGK+LQE
Sbjct: 426 LAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQE 485

Query: 481 IEMALL 486
           IE++LL
Sbjct: 486 IEISLL 491

May be involved in the efflux of glucose towards the cytosol.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYG3|PLST2_ARATH Probable plastidic glucose transporter 2 OS=Arabidopsis thaliana GN=At1g67300 PE=2 SV=1

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/492 (67%), Positives = 397/492 (80%), Gaps = 4/492 (0%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDI--GNPPWSRSLPHVLVAII 58
           M G   + S MYKR SS+D       E+++  + N +  ++   NP W  SLPHVLVA I
Sbjct: 1   MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query: 59  SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR 118
           SSFLFGYHLGVVNE LESIS DLGFSG T+AEGLVVS CLGGAF+GS+FSG +ADG GRR
Sbjct: 61  SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query: 119 RAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY 178
           RAFQ+CALPMI+GA +S ++ +L  MLLGR  VGTGMG+GP VAALYV+EVSPA+VRG Y
Sbjct: 121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query: 179 GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKR 238
           GS  QIA CLG++ ALF+G+P   I GWWR+CFW++TIPAA LAL M  CAESP WLFK+
Sbjct: 181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query: 239 GRGAEAEAELERLFGGLHVKYSMAELSK--SERGDEADAVKFSELISPRNFGVVFIGSTL 296
           G+ AEAEAE ERL GG HVK +MAEL K   ++ DE D V  SEL+  R+  VVFIGSTL
Sbjct: 241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query: 297 FALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLG 356
           FALQQLSGINAVFYFSSTVFK+AGVPSD GNI VG++NL GS+IAM+LMDK+GR++LLL 
Sbjct: 301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query: 357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI 416
           SF+GMA AM +Q  A +S++    AL LS+GG L+FVLTF+LGAGPVP LLL EIFP+RI
Sbjct: 361 SFIGMAAAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSRI 420

Query: 417 RAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK 476
           RAKAMA CM+VHWVINFFVGLLFLRLLE+LGP +LY++F +FC +AV++VKRNV+ETKGK
Sbjct: 421 RAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKGK 480

Query: 477 TLQEIEMALLPQ 488
           TLQEIE++LL +
Sbjct: 481 TLQEIEISLLAK 492

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q56ZZ7|PLST4_ARATH Plastidic glucose transporter 4 OS=Arabidopsis thaliana GN=At5g16150 PE=1 SV=2

 Score =  373 bits (957), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 212/474 (44%), Positives = 308/474 (64%), Gaps = 12/474 (2%)

Query: 13  KRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNE 72
           +  +S D D+E   E   +R     GK  G       LP V VA + + LFGYHLGVVN 
Sbjct: 80  RAQASSDGDEE---EAIPLRSE---GKSSGTV-----LPFVGVACLGAILFGYHLGVVNG 128

Query: 73  TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA 132
            LE ++ DLG + +T+ +G +VS+ L GA VGS   G +AD  GR R FQL A+P+ IGA
Sbjct: 129 ALEYLAKDLGIAENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGA 188

Query: 133 SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILV 192
            + A  +++  M++GRL  G G+GI  A+  LY+SE+SP  +RGA GS  Q+  C+GIL 
Sbjct: 189 FLCATAQSVQTMIVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILA 248

Query: 193 ALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLF 252
           AL  GLP      WWR  F VA IP+  LA+ M F  ESP WL ++G+ +EAE  ++ L+
Sbjct: 249 ALIAGLPLAANPLWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTLY 308

Query: 253 GGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFS 312
           G   V   + +LS S +G       + +L S R + VV +G+ LF  QQL+GINAV Y+S
Sbjct: 309 GKERVVELVRDLSASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYS 368

Query: 313 STVFKNAGVPSD-SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIA 371
           ++VF++AG+ SD + +  VG +N+ G+ +A  LMDK+GR+ LLL SF GMA++M + +++
Sbjct: 369 TSVFRSAGIQSDVAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLS 428

Query: 372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI 431
            T    ++ + +L++ G +L+VL+FSLGAGPVP+LLL EIF +RIRAKA+A+ + +HW+ 
Sbjct: 429 FTWKALAAYSGTLAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWIS 488

Query: 432 NFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL 485
           NF +GL FL ++ + G   +Y  F   C LAV+Y+  NV+ETKG++L+EIE+AL
Sbjct: 489 NFVIGLYFLSVVTKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVE9|PLST1_ARATH Probable plastidic glucose transporter 1 OS=Arabidopsis thaliana GN=At1g05030 PE=2 SV=2

 Score =  358 bits (920), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/472 (40%), Positives = 296/472 (62%), Gaps = 8/472 (1%)

Query: 16  SSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLE 75
           S+K  DD++   E +   P     D+G   W  + PHV VA +++FLFGYH+GV+N  + 
Sbjct: 52  STKKPDDDH---EISPVPPEKFSADLG---WLSAFPHVSVASMANFLFGYHIGVMNGPIV 105

Query: 76  SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135
           SI+ +LGF G+++ EGLVVS  + GAF+GS+ +G + D  G RR FQ+  +P+I+GA +S
Sbjct: 106 SIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVS 165

Query: 136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195
           A   +L  +L GR  VG G+G+   +  +Y+SEV+P   RG+ G+  QI  CLGI+ +L 
Sbjct: 166 AQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLL 225

Query: 196 VGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGL 255
           +G+PA++   WWR   +VA++P   LAL M+F  ESP WL K GR  +A+  +  ++GG 
Sbjct: 226 LGIPAEDDPHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGS 285

Query: 256 HVKYSMAELSKSERGDEAD-AVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSST 314
            V+ ++ +     +   ++   ++ EL+   +  V FIG +LF LQQ +GIN V YFSS 
Sbjct: 286 EVEKAVEDFQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSL 345

Query: 315 VFKNAGVPSDS-GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT 373
            F+N G+ S +  ++ VG+ N +G++ A  L+DK GR+ LL+GS+LGMA++M +   A  
Sbjct: 346 TFQNVGITSGAQASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVG 405

Query: 374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF 433
             +    + SLS+ G L+++ +F++GAGPV  L++ E+  NR R K M    +VHWV NF
Sbjct: 406 FPLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNF 465

Query: 434 FVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL 485
            VGL FL L+E+ G   +Y  FGS   LA  +     +ETKG++L+EIE++L
Sbjct: 466 LVGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSL 517

May be involved in the efflux of glucose towards the cytosol.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YP9|ERDL4_ARATH Sugar transporter ERD6-like 4 OS=Arabidopsis thaliana GN=At1g19450 PE=2 SV=1

 Score =  198 bits (503), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 150/445 (33%), Positives = 240/445 (53%), Gaps = 22/445 (4%)

Query: 50  LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSG 109
           L  VL+  +    FG+  G  + T  +I+ DLG + S  +    +S    GA VG++ SG
Sbjct: 50  LACVLIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNV--GAMVGAIASG 107

Query: 110 WIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV 169
            IA+ +GR+ +  + A+P IIG    +  K+   + +GRL  G G+GI      +Y++E+
Sbjct: 108 QIAEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEI 167

Query: 170 SPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCA 229
           +P  +RGA GS  Q++  +GI++A  +GL        WRI   +  +P   L   + F  
Sbjct: 168 APQTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIP 222

Query: 230 ESPHWLFKRGRGAEAEAELERLFG-GLHVKYSMAELSKS-ERGDEADAVKFSELISPRNF 287
           ESP WL K G   + E  L+ L G    +   + E+ +S     +  AV+F +L   R +
Sbjct: 223 ESPRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYY 282

Query: 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-GNICVGIANLSGSIIAMILMD 346
             + +G  L ALQQL GIN V ++SST+F++AGV S +     VG+  +  + IA  L+D
Sbjct: 283 FPLMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVD 342

Query: 347 KLGRRVLLLGSFLGMAIAMGVQAIA--ATSFVSSSGAL-----SLSLGGMLLFVLTFSLG 399
           K GRR+LL+ S +GM I++ + A+A     FVS    +      +S+ G++  V++ SLG
Sbjct: 343 KAGRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLG 402

Query: 400 AGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL--EQLGPLILYTIFGS 457
            GP+P L++SEI P  I+  A ++   ++W +++ V +    LL     G   LY +   
Sbjct: 403 MGPIPWLIMSEILPVNIKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGTFTLYAL--- 459

Query: 458 FCFLAVIYVKRNVMETKGKTLQEIE 482
            C   V++V   V ETKGKTL+EI+
Sbjct: 460 VCGFTVVFVSLWVPETKGKTLEEIQ 484

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P15729|GLCP_SYNY3 Glucose transport protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=gtr PE=3 SV=2

 Score =  197 bits (502), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 142/453 (31%), Positives = 233/453 (51%), Gaps = 33/453 (7%)

Query: 55  VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG 114
           VA +  FLFG+   V+N  + +  L   F   ++  GL VS  L G+ +G+  +G IAD 
Sbjct: 23  VAALGGFLFGFDTAVINGAVAA--LQKHFQTDSLLTGLSVSLALLGSALGAFGAGPIADR 80

Query: 115 IGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV 174
            GR +   L A+   + +  S +   +W  +  R+  G G+G    +A  Y++EVSPA++
Sbjct: 81  HGRIKTMILAAVLFTLSSIGSGLPFTIWDFIFWRVLGGIGVGAASVIAPAYIAEVSPAHL 140

Query: 175 RGAYGSSTQIAACLGILVAL----FVGLPA--KEILGW------WRICFWVATIPAAFLA 222
           RG  GS  Q+A   GI +AL    F+ L A       W      WR  FW   IPA    
Sbjct: 141 RGRLGSLQQLAIVSGIFIALLSNWFIALMAGGSAQNPWLFGAAAWRWMFWTELIPALLYG 200

Query: 223 LFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI 282
           +      ESP +L  +G+G +A A L ++ GG  V   + E+  +   D     +FS+L+
Sbjct: 201 VCAFLIPESPRYLVAQGQGEKAAAILWKVEGG-DVPSRIEEIQATVSLDHKP--RFSDLL 257

Query: 283 SPRN--FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSG 337
           S R     +V+IG  L ALQQ  GIN +FY+SS ++++ G   +      +  G  N+  
Sbjct: 258 SRRGGLLPIVWIGMGLSALQQFVGINVIFYYSSVLWRSVGFTEEKSLLITVITGFINILT 317

Query: 338 SIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIA---------ATSFVSSSGALSLSLGG 388
           +++A+  +DK GR+ LLL   +GM I +G+ ++            +   ++G ++L    
Sbjct: 318 TLVAIAFVDKFGRKPLLLMGSIGMTITLGILSVVFGGATVVNGQPTLTGAAGIIALVTAN 377

Query: 389 MLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP 448
             L+V +F    GP+  +LL E+F N+IRA A++V   V W+ NF +   F  LL+ +G 
Sbjct: 378 --LYVFSFGFSWGPIVWVLLGEMFNNKIRAAALSVAAGVQWIANFIISTTFPPLLDTVGL 435

Query: 449 LILYTIFGSFCFLAVIYVKRNVMETKGKTLQEI 481
              Y ++ +   +++ ++   V ETKGKTL+++
Sbjct: 436 GPAYGLYATSAAISIFFIWFFVKETKGKTLEQM 468

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|C0SPB2|YWTG_BACSU Putative metabolite transport protein YwtG OS=Bacillus subtilis (strain 168) GN=ywtG PE=3 SV=1

 Score =  197 bits (500), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 133/427 (31%), Positives = 225/427 (52%), Gaps = 9/427 (2%)

Query: 62  LFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAF 121
           L+GY  GV++  +  +  +LG +  T  EGLVVS+ L GA +GS  +G + D  GR++A 
Sbjct: 19  LYGYDTGVISGAILFMKKELGLNAFT--EGLVVSSLLVGAILGSGAAGKLTDRFGRKKAI 76

Query: 122 QLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS 181
              AL   IG    A+  N   M+L R+ +G  +G    +  LY+SE++P + RGA  S 
Sbjct: 77  MAAALLFCIGGLGVALAPNTGVMVLFRIILGLAVGTSTTIVPLYLSELAPKHKRGALSSL 136

Query: 182 TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRG 241
            Q+   +GIL++  V     +   W R    +A +P+  L + + F  ESP WLF  G  
Sbjct: 137 NQLMITVGILLSYIVNYIFADAEAW-RWMLGLAAVPSLLLLIGILFMPESPRWLFTNGEE 195

Query: 242 AEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQ 301
           ++A+  LE+L G   +   + ++ ++E+ DE       EL  P     +  G  L  LQQ
Sbjct: 196 SKAKKILEKLRGTKDIDQEIHDIKEAEKQDEGG---LKELFDPWVRPALIAGLGLAFLQQ 252

Query: 302 LSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF 358
             G N + Y++   F N G  + +   G + +G  N+  +++A+ ++DK+GR+ LLL   
Sbjct: 253 FIGTNTIIYYAPKTFTNVGFGNSASILGTVGIGTVNVLMTLVAIKIIDKIGRKPLLLFGN 312

Query: 359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRA 418
            GM I++ V A+    F ++  A   ++  + +F++ F++  GPV  ++L E+FP  +R 
Sbjct: 313 AGMVISLIVLALVNLFFDNTPAASWTTVICLGVFIVVFAVSWGPVVWVMLPELFPLHVRG 372

Query: 419 KAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTL 478
               V   +  V    V L +  L+E +G   L+ I+ +   +A ++V+  V ETKG++L
Sbjct: 373 IGTGVSTLMLHVGTLIVSLTYPILMEAIGISYLFLIYAAIGIMAFLFVRFKVTETKGRSL 432

Query: 479 QEIEMAL 485
           +EIE  L
Sbjct: 433 EEIEQDL 439

Bacillus subtilis (strain 168) (taxid: 224308)

>sp|Q9FRL3|ERDL6_ARATH Sugar transporter ERD6-like 6 OS=Arabidopsis thaliana GN=At1g75220 PE=1 SV=1

 Score =  195 bits (495), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 147/443 (33%), Positives = 235/443 (53%), Gaps = 18/443 (4%)

Query: 50  LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSG 109
           L  VL+  +    FG+  G  + T  +I+ DLG + S  +    +S    GA VG++ SG
Sbjct: 49  LACVLIVALGPIQFGFTCGYSSPTQAAITKDLGLTVSEYSVFGSLSNV--GAMVGAIASG 106

Query: 110 WIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV 169
            IA+ IGR+ +  + A+P IIG    +  K+   + +GRL  G G+GI      +Y++E+
Sbjct: 107 QIAEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEI 166

Query: 170 SPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCA 229
           +P  +RG  GS  Q++  +GI++A  +GL        WRI   +  +P   L   + F  
Sbjct: 167 APQNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIP 221

Query: 230 ESPHWLFKRGRGAEAEAELERLFG-GLHVKYSMAELSKS-ERGDEADAVKFSELISPRNF 287
           ESP WL K G   E E  L+ L G    +   + E+ +S     + + V+F +L   R +
Sbjct: 222 ESPRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYY 281

Query: 288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVP-SDSGNICVGIANLSGSIIAMILMD 346
             + +G  L  LQQL GIN V ++SST+F++AGV  S++    VG   +  + I+  L+D
Sbjct: 282 FPLMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVD 341

Query: 347 KLGRRVLLLGSFLGMAIAMGVQAIA--ATSFVSSSGALS-----LSLGGMLLFVLTFSLG 399
           K GRR+LL  S +GM I++ + A A     FVS    +      LS+ G++  V+ FSLG
Sbjct: 342 KAGRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLG 401

Query: 400 AGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFC 459
            GP+P L++SEI P  I+  A ++    +W  ++ + +    LL        +T++G  C
Sbjct: 402 MGPIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMT-ANLLLAWSSGGTFTLYGLVC 460

Query: 460 FLAVIYVKRNVMETKGKTLQEIE 482
              V++V   V ETKGKTL+E++
Sbjct: 461 AFTVVFVTLWVPETKGKTLEELQ 483

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P47842|GTR3_CANFA Solute carrier family 2, facilitated glucose transporter member 3 OS=Canis familiaris GN=SLC2A3 PE=2 SV=1

 Score =  193 bits (490), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 225/456 (49%), Gaps = 25/456 (5%)

Query: 55  VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLG------------GAF 102
           +A I SF FGY+ GV+N     I   L ++    +E L     L             G  
Sbjct: 16  IATIGSFQFGYNTGVINAPETIIKDFLNYTLEEKSENLPTEVLLTSLWSLSVAIFSVGGM 75

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASM---SAITKNLWGMLLGRLFVGTGMGIGP 159
           +GS   G   +  GRR +  +  L  + G  +     I +++  ++LGRL +G   G+  
Sbjct: 76  IGSFSVGLFVNRFGRRNSMLMVNLLAVAGGCLMGFCKIAQSVEMLILGRLIIGLFCGLCT 135

Query: 160 AVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG---WWRICFWVATI 216
               +Y+ E+SP  +RGA+G+  Q+   +GILVA   GL  K I+G    W +      I
Sbjct: 136 GFVPMYIGEISPTALRGAFGTLNQLGIVIGILVAQIFGL--KVIMGTEELWPLLLGFTII 193

Query: 217 PAAFLALFMEFCAESPHWLF-KRGRGAEAEAELERLFGGLHVKYSMAEL-SKSERGDEAD 274
           PA   +  + FC ESP +L   R     A+  L+RL+G   V   + E+  +S R  +  
Sbjct: 194 PAVLQSAALPFCPESPRFLLINRKEEENAKEILQRLWGTQDVSQDIQEMKDESARMAQEK 253

Query: 275 AVKFSELISPRNFGVVFIGSTLFAL-QQLSGINAVFYFSSTVFKNAGVPSD-SGNICVGI 332
            V   EL   R++    I S +  L QQLSGINAVFY+S+ +FK+AGV       I  G+
Sbjct: 254 QVTVLELFRSRSYRQPIIISIMLQLSQQLSGINAVFYYSTGIFKDAGVEEPIYATIGAGV 313

Query: 333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLF 392
            N   +++++ L+++ GRR L +    GMA+   +  I+     + +    + +G +L+F
Sbjct: 314 VNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSILMTISLLLKDNYNWMSFVCIGAILVF 373

Query: 393 VLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILY 452
           V  F +G GP+P  +++E+F    R  AMAV    +W  NF VGLLF      LG  + +
Sbjct: 374 VAFFEIGPGPIPWFIVAELFSQGPRPAAMAVAGCSNWTSNFLVGLLFPSAAFYLGAYV-F 432

Query: 453 TIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQ 488
            IF  F  + +++    V ET+G+T +EI  A   Q
Sbjct: 433 IIFTGFLIVFLVFTFFKVPETRGRTFEEITRAFEGQ 468

Facilitative glucose transporter. Probably a neuronal glucose transporter.

Canis familiaris (taxid: 9615)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score =  191 bits (485), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 228/438 (52%), Gaps = 15/438 (3%)

Query: 54  LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLG-GAFVGSMFSGWIA 112
            VA+  SF+FG  +G  +     ++ +L  S   +AE  +  + L  GA +G+  SG IA
Sbjct: 37  FVAVSGSFVFGSAIGYSSPVQSDLTKELNLS---VAEYSLFGSILTIGAMIGAAMSGRIA 93

Query: 113 DGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA 172
           D IGRR       +  I+G     ++K    + +GR  VG GMG+   V  +Y++E++P 
Sbjct: 94  DMIGRRATMGFSEMFCILGWLAIYLSKVAIWLDVGRFLVGYGMGVFSFVVPVYIAEITPK 153

Query: 173 YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP 232
            +RG + +  Q+  CLG+ V   +G      +G WRI   +  IP     + +    ESP
Sbjct: 154 GLRGGFTTVHQLLICLGVSVTYLLG----SFIG-WRILALIGMIPCVVQMMGLFVIPESP 208

Query: 233 HWLFKRGRGAEAEAELERLFG-GLHVKYSMAELSK-SERGDEADAVKFSELISPRNFGVV 290
            WL K G+  E E  L+RL G    + Y   E+   + R  +       +L  P+    +
Sbjct: 209 RWLAKVGKWEEFEIALQRLRGESADISYESNEIKDYTRRLTDLSEGSIVDLFQPQYAKSL 268

Query: 291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGR 350
            +G  L  LQQ  G+N + +++S++F++AGV S  G I + +  +  + + ++LMDK GR
Sbjct: 269 VVGVGLMVLQQFGGVNGIAFYASSIFESAGVSSKIGMIAMVVVQIPMTTLGVLLMDKSGR 328

Query: 351 RVLLLGSFLGMAIAMGVQAIA-ATSFVS--SSGALSLSLGGMLLFVLTFSLGAGPVPSLL 407
           R LLL S  G  I   +  ++ +  FV   S  A  L+L G+L++  +FSLG G +P ++
Sbjct: 329 RPLLLISATGTCIGCFLVGLSFSLQFVKQLSGDASYLALTGVLVYTGSFSLGMGGIPWVI 388

Query: 408 LSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK 467
           +SEIFP  I+  A ++   V WV ++ +   F   L    P   + +F + C   VI+V 
Sbjct: 389 MSEIFPIDIKGSAGSLVTVVSWVGSWIISFTF-NFLMNWNPAGTFYVFATVCGATVIFVA 447

Query: 468 RNVMETKGKTLQEIEMAL 485
           + V ETKG+TL+EI+ ++
Sbjct: 448 KLVPETKGRTLEEIQYSI 465

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
224054374	489	predicted protein [Populus trichocarpa]	1.0	1.0	0.760	0.0
225445194	488	PREDICTED: probable plastidic glucose tr	0.997	1.0	0.730	0.0
297839953	495	hypothetical protein ARALYDRAFT_477286 [	0.983	0.971	0.720	0.0
30699453	495	putative plastidic glucose transporter 3	0.983	0.971	0.718	0.0
449465276	459	PREDICTED: probable plastidic glucose tr	0.922	0.982	0.773	0.0
224142161	489	predicted protein [Populus trichocarpa]	0.997	0.997	0.722	0.0
297743265	536	unnamed protein product [Vitis vinifera]	0.959	0.875	0.754	0.0
356526129	479	PREDICTED: probable plastidic glucose tr	0.971	0.991	0.696	0.0
359482592	552	PREDICTED: probable plastidic glucose tr	0.973	0.862	0.739	0.0
27261731	489	sugar transporter [Citrus unshiu]	1.0	1.0	0.703	0.0

>gi|224054374|ref|XP_002298228.1| predicted protein [Populus trichocarpa] gi|222845486|gb|EEE83033.1| predicted protein [Populus trichocarpa]

 Score =  768 bits (1984), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/489 (76%), Positives = 424/489 (86%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           MRGR+ +     KRASS+D  + Y +EE++  +  G  KD GNP W  SL HVLVA +SS
Sbjct: 1   MRGRYVETVVTKKRASSRDFINAYDREESSGHLAIGTAKDAGNPHWRHSLVHVLVATLSS 60

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
           FLFGYHLGVVNETLE+IS DLGFSG+TMAEGLVVSTCLGGAFVGS+FSGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNETLETISFDLGFSGNTMAEGLVVSTCLGGAFVGSIFSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQLCALPMIIGASMSA TK+LWGMLLGR FVGTGMGIGP VAALYV+EVSPAYVRG YGS
Sbjct: 121 FQLCALPMIIGASMSATTKDLWGMLLGRFFVGTGMGIGPPVAALYVTEVSPAYVRGTYGS 180

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
            TQI+ CLG+L +  +G+PAKE +GWWRICFWV+ IPAA LALFMEFCAESPHWL KRGR
Sbjct: 181 LTQISTCLGLLGSFVIGIPAKETMGWWRICFWVSAIPAAMLALFMEFCAESPHWLLKRGR 240

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
             EAEA+ E+L GG HVK ++ ELSKS+RGDE D VK SE +  R F VVFIGS LFALQ
Sbjct: 241 STEAEAQFEKLLGGSHVKSAIIELSKSDRGDEVDKVKLSEFLYGRYFKVVFIGSALFALQ 300

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINAVFYFSS VFK+AGVPSDS NICVG++NL GSIIAM++MDKLGR+VLL GSF G
Sbjct: 301 QLSGINAVFYFSSAVFKSAGVPSDSANICVGVSNLLGSIIAMVMMDKLGRKVLLTGSFFG 360

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA++MG+QA AATSFVSS  AL LS+GGMLLFVL FSLGAGPVPSLLLSEIFP+RIRAKA
Sbjct: 361 MAVSMGLQATAATSFVSSFAALYLSVGGMLLFVLMFSLGAGPVPSLLLSEIFPSRIRAKA 420

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           +A+CMAVHWVINFFVGLLFLRLLEQ+GPL+LYT+FGSFC +AV +VK+NV+ETKGK+LQE
Sbjct: 421 LAICMAVHWVINFFVGLLFLRLLEQIGPLVLYTVFGSFCLVAVFFVKKNVLETKGKSLQE 480

Query: 481 IEMALLPQQ 489
           IE+AL+P +
Sbjct: 481 IEIALMPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445194|ref|XP_002284229.1| PREDICTED: probable plastidic glucose transporter 2 [Vitis vinifera] gi|297738801|emb|CBI28046.3| unnamed protein product [Vitis vinifera] gi|310877904|gb|ADP37183.1| putative monosaccharide transporter [Vitis vinifera]

 Score =  716 bits (1849), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/489 (73%), Positives = 421/489 (86%), Gaps = 1/489 (0%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           M GR G+ S  YKR SS+D + +   EE++    NG+G++I NP W  SLPH++VA ISS
Sbjct: 1   MWGRQGEASVTYKRVSSRD-NTKVDMEESSALFQNGMGQEITNPSWKLSLPHIIVATISS 59

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
           FLFGYHLGVVNE LE+I+LDLGFSG+T+AEGLVVSTCLGGAF+GS+FSGWIADGIGRRRA
Sbjct: 60  FLFGYHLGVVNEPLETIALDLGFSGNTLAEGLVVSTCLGGAFIGSLFSGWIADGIGRRRA 119

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQLCALPMIIGAS+SA TK+L GML+GR  VGTGMG+GP VA+LYV+EVSPA+VRG YGS
Sbjct: 120 FQLCALPMIIGASVSATTKSLEGMLIGRFLVGTGMGVGPPVASLYVTEVSPAFVRGTYGS 179

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
             Q+A CLG++ ALF+G+P K I+GWWRICFW+AT+PA  LA  M FCAESPHWL+K+GR
Sbjct: 180 FIQLATCLGLMGALFIGIPVKAIIGWWRICFWIATVPAGILAFAMMFCAESPHWLYKKGR 239

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
            AEAEAE E+L GG HVK++MA+L KS+RGDE DAVK SEL+  R+F VVFIGSTLFALQ
Sbjct: 240 IAEAEAEFEKLLGGSHVKFAMADLHKSDRGDETDAVKLSELLYGRHFRVVFIGSTLFALQ 299

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINAVFYFSSTVFK+AGVPSD  N+ VGIANLSGSI AMILMDKLGR+ LL+ SF G
Sbjct: 300 QLSGINAVFYFSSTVFKSAGVPSDLANVFVGIANLSGSITAMILMDKLGRKALLVWSFFG 359

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA+AM VQ   A+SF+S SGA+ LS+ GMLLFVLTF+LGAGPVP LLL EIFPNRIRAKA
Sbjct: 360 MAVAMSVQVAGASSFISGSGAVFLSVSGMLLFVLTFALGAGPVPGLLLPEIFPNRIRAKA 419

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           MAVCM+VHWVINFFVGLLFL LLEQLGP +LY++F +FC +AV++VKRNV+ETKG++LQE
Sbjct: 420 MAVCMSVHWVINFFVGLLFLPLLEQLGPQLLYSMFCTFCLMAVVFVKRNVVETKGRSLQE 479

Query: 481 IEMALLPQQ 489
           IE+ALLPQ+
Sbjct: 480 IEIALLPQE 488

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839953|ref|XP_002887858.1| hypothetical protein ARALYDRAFT_477286 [Arabidopsis lyrata subsp. lyrata] gi|297333699|gb|EFH64117.1| hypothetical protein ARALYDRAFT_477286 [Arabidopsis lyrata subsp. lyrata]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/486 (72%), Positives = 411/486 (84%), Gaps = 5/486 (1%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           MRGRH D     KR  SKD      K ET +R+P G GK+ GNP W RSLPHVLVA ++S
Sbjct: 11  MRGRHID-----KRVPSKDFLSALDKAETAVRLPTGTGKENGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
            LFGYHLGVVNETLESIS+DLGFSG+T+AEGLVVSTCLGGAF+GS+FSG +ADG+GRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQL ALPMI+GAS+SA T++L GMLLGR  VG GMGIGP+V ALYV+EVSPAYVRG YGS
Sbjct: 126 FQLSALPMIVGASVSASTESLEGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
           STQIA C+G+L +LF G+PAK+ LGWWRICFW++T+PAA LA+FME C ESP WLFKRGR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
            AEAEA  E+L GG +VK SMAEL KS+RGD+AD+ K SEL+  R+F VVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKASMAELMKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINAVFYFSSTVFK AGVPS S NICVG+ NL GS +A++LMDKLGR+VLL+GSF G
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA+++G+QAIA TS  S  G L LS+GGMLLFVL+F+ GAGPVPSLLLSEI P R+RA A
Sbjct: 366 MAVSLGLQAIAYTSLSSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATA 425

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           +AVC+AVHWVINFFVGLLFLR+LEQLG ++L  IFG FC +AVI+V++NV+ETKGK+LQE
Sbjct: 426 LAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQE 485

Query: 481 IEMALL 486
           IE++LL
Sbjct: 486 IEISLL 491

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30699453|ref|NP_850983.1| putative plastidic glucose transporter 3 [Arabidopsis thaliana] gi|30699455|ref|NP_178100.3| putative plastidic glucose transporter 3 [Arabidopsis thaliana] gi|117940111|sp|Q2V4B9.2|PLST3_ARATH RecName: Full=Probable plastidic glucose transporter 3 gi|222424748|dbj|BAH20327.1| AT1G79820 [Arabidopsis thaliana] gi|332198182|gb|AEE36303.1| putative plastidic glucose transporter 3 [Arabidopsis thaliana] gi|332198183|gb|AEE36304.1| putative plastidic glucose transporter 3 [Arabidopsis thaliana]

 Score =  713 bits (1841), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/486 (71%), Positives = 411/486 (84%), Gaps = 5/486 (1%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           MRGRH D     KR  SK+      K ET +R+P G GKD GNP W RSLPHVLVA ++S
Sbjct: 11  MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
            LFGYHLGVVNETLESIS+DLGFSG+T+AEGLVVSTCLGGAF+GS+FSG +ADG+GRRRA
Sbjct: 66  LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQL ALPMI+GAS+SA T++L GMLLGR  VG GMGIGP+V ALYV+EVSPAYVRG YGS
Sbjct: 126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
           STQIA C+G+L +LF G+PAK+ LGWWRICFW++T+PAA LA+FME C ESP WLFKRGR
Sbjct: 186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
            AEAEA  E+L GG +VK +MAEL KS+RGD+AD+ K SEL+  R+F VVFIGSTLFALQ
Sbjct: 246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINAVFYFSSTVFK AGVPS S NICVG+ NL GS +A++LMDKLGR+VLL+GSF G
Sbjct: 306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA+++G+QAIA TS  S  G L LS+GGMLLFVL+F+ GAGPVPSLLLSEI P R+RA A
Sbjct: 366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATA 425

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           +AVC+AVHWVINFFVGLLFLR+LEQLG ++L  IFG FC +AVI+V++NV+ETKGK+LQE
Sbjct: 426 LAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQE 485

Query: 481 IEMALL 486
           IE++LL
Sbjct: 486 IEISLL 491

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449465276|ref|XP_004150354.1| PREDICTED: probable plastidic glucose transporter 3-like [Cucumis sativus]

 Score =  707 bits (1826), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/451 (77%), Positives = 396/451 (87%)

Query: 39  KDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCL 98
           +  G P W R  PHV+VA ++SFLFGYHLGVVNETLESISLDL FSGST+AEGLVVSTCL
Sbjct: 9   RHTGYPSWRRPFPHVVVATLASFLFGYHLGVVNETLESISLDLAFSGSTLAEGLVVSTCL 68

Query: 99  GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIG 158
           GGAF+GS+FSGWIADG+GRRRA QLCALPMIIGASMSA TKNLWGMLLGRLFVGTGMG+G
Sbjct: 69  GGAFLGSLFSGWIADGVGRRRALQLCALPMIIGASMSATTKNLWGMLLGRLFVGTGMGLG 128

Query: 159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPA 218
           PAVAALYVSEVSPAYVRG +GS TQI++CLG+L +LF+GL AK I+GWWR CFWV+ IPA
Sbjct: 129 PAVAALYVSEVSPAYVRGTFGSFTQISSCLGLLGSLFMGLQAKGIVGWWRACFWVSVIPA 188

Query: 219 AFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF 278
           A LAL MEF AESPHWLFK GR AEAEAE E+L GG  VKY+ AELSKS++G+++ AVK 
Sbjct: 189 ALLALLMEFSAESPHWLFKSGRTAEAEAEFEKLLGGADVKYAYAELSKSDKGEDSGAVKL 248

Query: 279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGS 338
           SEL+  R+  VVFIGSTLFALQQLSGINAVFYFSS+VFK+ GVPSD  NIC+G+AN  GS
Sbjct: 249 SELLHGRHHRVVFIGSTLFALQQLSGINAVFYFSSSVFKSFGVPSDRANICIGVANFLGS 308

Query: 339 IIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSL 398
           I+AMILMDKLGRRVLLLGSF GM ++MG+Q   A+SF SS+ A  LS GGMLLFVLTFSL
Sbjct: 309 IVAMILMDKLGRRVLLLGSFSGMVVSMGLQVFGASSFPSSTEAFYLSAGGMLLFVLTFSL 368

Query: 399 GAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSF 458
           GAGPVPSLLLSEIFP+RIRAKAMA CM+VHWVINFFVGLLFL LLEQ+G  ILYT+FG+F
Sbjct: 369 GAGPVPSLLLSEIFPSRIRAKAMAFCMSVHWVINFFVGLLFLPLLEQIGAQILYTVFGAF 428

Query: 459 CFLAVIYVKRNVMETKGKTLQEIEMALLPQQ 489
           C ++VI+VKRNV+ETKGK+LQEIEMALLP +
Sbjct: 429 CLISVIFVKRNVVETKGKSLQEIEMALLPVE 459

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142161|ref|XP_002324427.1| predicted protein [Populus trichocarpa] gi|222865861|gb|EEF02992.1| predicted protein [Populus trichocarpa]

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/490 (72%), Positives = 417/490 (85%), Gaps = 2/490 (0%)

Query: 1   MRG-RHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIIS 59
           MRG R G+ S MYKR SS+D       E+ ++   +   ++I NP W  S PHVL A IS
Sbjct: 1   MRGHRTGEYS-MYKRMSSRDFTVAADVEDNSVVSQSIPDQEITNPSWRLSFPHVLAATIS 59

Query: 60  SFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR 119
           +FLFGYHLGVVNE LESISLDLGF+G+T+AEGLVVSTCLGGA +GS+FSGWIADGIGRRR
Sbjct: 60  AFLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSTCLGGALIGSLFSGWIADGIGRRR 119

Query: 120 AFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYG 179
           AFQLCALPMI+GAS+SA TK L GMLLGRL VGTGMG+GP V++LYV+EVSP++VRG YG
Sbjct: 120 AFQLCALPMIVGASISATTKTLAGMLLGRLLVGTGMGLGPPVSSLYVTEVSPSFVRGTYG 179

Query: 180 SSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRG 239
           S  QIA CLG++ ALF+G+P +EI GWWRICFWV+T+PA  LAL M FCAESPHWL+K+G
Sbjct: 180 SFIQIATCLGLMAALFIGIPVREIAGWWRICFWVSTVPAGILALSMMFCAESPHWLYKQG 239

Query: 240 RGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFAL 299
           R AEAEAE ERL GG HVK++M ELSK +RGD++D V FSEL+  R F VVFIGSTLFAL
Sbjct: 240 RTAEAEAEFERLLGGAHVKFAMQELSKLDRGDDSDDVHFSELLYGRCFRVVFIGSTLFAL 299

Query: 300 QQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFL 359
           QQLSGINA+FYFSSTVFKNAGVPSD  N+ VGIANLSGS+IAM+LMDK+GR+VLLL SF 
Sbjct: 300 QQLSGINAIFYFSSTVFKNAGVPSDLANVFVGIANLSGSVIAMVLMDKMGRKVLLLWSFS 359

Query: 360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAK 419
           GMA++MG+Q +AA+S +  SG L LS+GGML+FV TF++GAGPVP LLL EIFP+RIRAK
Sbjct: 360 GMAVSMGLQVVAASSNMLGSGTLYLSVGGMLMFVFTFAIGAGPVPGLLLPEIFPSRIRAK 419

Query: 420 AMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQ 479
           AMAVCM+VHWVINFFVGLLFLRLLEQLGP +LYTIFG+FC +AV++VKRNVMETKGK+LQ
Sbjct: 420 AMAVCMSVHWVINFFVGLLFLRLLEQLGPRLLYTIFGTFCLMAVVFVKRNVMETKGKSLQ 479

Query: 480 EIEMALLPQQ 489
           EIE+ALLP +
Sbjct: 480 EIEIALLPPE 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743265|emb|CBI36132.3| unnamed protein product [Vitis vinifera]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/469 (75%), Positives = 399/469 (85%)

Query: 12  YKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVN 71
           YKR +SKD      +EE+ +R  N  GK+ GNP WS SLPH+LVA + SFLFGYHLGVVN
Sbjct: 6   YKRTASKDYLTGLDREESIVRFHNVAGKESGNPSWSLSLPHILVATVCSFLFGYHLGVVN 65

Query: 72  ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG 131
           ETLE ISLDLGF+GST+AEGLVVSTCLGGAFVGS+FSGWIADGIGRRRAFQLCALPMIIG
Sbjct: 66  ETLEIISLDLGFNGSTLAEGLVVSTCLGGAFVGSLFSGWIADGIGRRRAFQLCALPMIIG 125

Query: 132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL 191
           ASMSA T++L GMLLGR  VGTGMGIGP V +LYV+EVSP +VRG +GS TQIA C+G++
Sbjct: 126 ASMSATTRSLEGMLLGRFLVGTGMGIGPPVVSLYVAEVSPTFVRGTFGSFTQIATCIGLI 185

Query: 192 VALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERL 251
            AL +G+PAKEI GWWR+CFWV+  PAA LA  MEF AESPHWL K+GR AEAEAE E+L
Sbjct: 186 GALLIGIPAKEIDGWWRVCFWVSAFPAAILAFLMEFSAESPHWLLKKGRAAEAEAEFEKL 245

Query: 252 FGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYF 311
            GGLHVK ++AEL K ERG+E DAVK S+L     F VVFIGS+LFALQQLSGINAVFYF
Sbjct: 246 LGGLHVKSAIAELLKLERGEEVDAVKLSDLFFGHYFRVVFIGSSLFALQQLSGINAVFYF 305

Query: 312 SSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIA 371
           SSTVFK AGVP D  N+CVGIANLSGSIIAMILMDKLGRRVLLL SF GMA +MG+Q  A
Sbjct: 306 SSTVFKGAGVPPDLANMCVGIANLSGSIIAMILMDKLGRRVLLLVSFSGMAASMGLQVTA 365

Query: 372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI 431
           A+SF S SGAL LS+GGMLL VLTFSLGAGPVP LLL+EIFP+RIRAKAMAVC+AVHWVI
Sbjct: 366 ASSFASESGALYLSVGGMLLCVLTFSLGAGPVPGLLLAEIFPSRIRAKAMAVCLAVHWVI 425

Query: 432 NFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           NFFVGLLFLRLLEQ+GP ILYTIF +FC +AV +VK+NV+ETKGK+LQE
Sbjct: 426 NFFVGLLFLRLLEQIGPQILYTIFATFCLIAVAFVKKNVVETKGKSLQE 474

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526129|ref|XP_003531672.1| PREDICTED: probable plastidic glucose transporter 3-like [Glycine max]

 Score =  692 bits (1786), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/491 (69%), Positives = 409/491 (83%), Gaps = 16/491 (3%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEET--TIRMPNGLGKDIGNPPWSRSLPHVLVAII 58
           MRGR        +R SS++    + K+E   ++R+PN        P W RSL HV+VA +
Sbjct: 1   MRGR--------QRVSSREHILGHDKDENLASVRIPNA------KPCWRRSLRHVIVASL 46

Query: 59  SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR 118
           SSFL+GYH+GVVNETLESIS+DLGFSG+TMAEGLVVS CLGGAFVGS+FSGWIADG+GRR
Sbjct: 47  SSFLYGYHIGVVNETLESISIDLGFSGNTMAEGLVVSICLGGAFVGSLFSGWIADGVGRR 106

Query: 119 RAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY 178
           R+FQLCALPMIIGA MSA  K LWGMLLGRLFVGTGMG+GP VAALYV+EVSP  VRGA+
Sbjct: 107 RSFQLCALPMIIGAGMSATAKTLWGMLLGRLFVGTGMGLGPPVAALYVAEVSPPAVRGAF 166

Query: 179 GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKR 238
           G+ TQIA CLG++ +LF+G+PAK+I+GWWRICFWV+ IPA  LALFME CAESPHWLFKR
Sbjct: 167 GALTQIATCLGLMGSLFIGIPAKDIVGWWRICFWVSVIPATMLALFMEICAESPHWLFKR 226

Query: 239 GRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFA 298
           GR  EAEA  E+L GG+HVK +M ELSKS+RGD +D+VK SELI  R F V+FIGSTLFA
Sbjct: 227 GRTIEAEASFEKLLGGVHVKPAMNELSKSDRGDGSDSVKLSELICGRYFRVMFIGSTLFA 286

Query: 299 LQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSF 358
           LQQLSGINAVFYFSSTVF++ GVPS   N CVG+ NL GS++AMILMDKLGR+VLLLGSF
Sbjct: 287 LQQLSGINAVFYFSSTVFESFGVPSAIANTCVGVCNLLGSVVAMILMDKLGRKVLLLGSF 346

Query: 359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRA 418
           LGM ++MGVQ IAA+SF S  G++ LS+GGMLLFVL+F+ GAGPVP L++SEI P+ IRA
Sbjct: 347 LGMGLSMGVQVIAASSFASGFGSMYLSVGGMLLFVLSFAFGAGPVPCLIMSEILPSNIRA 406

Query: 419 KAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTL 478
           KAMA+C+AVHWVINFFVGL FLRLLE +G  +LY+IFG  C +AV++VK+N++ETKGK+L
Sbjct: 407 KAMAICLAVHWVINFFVGLFFLRLLELIGAQLLYSIFGFCCLIAVVFVKKNILETKGKSL 466

Query: 479 QEIEMALLPQQ 489
           QEIE+ALL Q+
Sbjct: 467 QEIEIALLAQE 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482592|ref|XP_002279432.2| PREDICTED: probable plastidic glucose transporter 3-like [Vitis vinifera]

 Score =  691 bits (1783), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/484 (73%), Positives = 403/484 (83%), Gaps = 8/484 (1%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           MR R       YKR +SKD      +EE  IR  N  GK+ GNP WS SLPH+LVA + S
Sbjct: 1   MRERQ------YKRTASKDYLTGLDREE--IRFHNVAGKESGNPSWSLSLPHILVATVCS 52

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
           FLFGYHLGVVNETLE ISLDLGF+GST+AEGLVVSTCLGGAFVGS+FSGWIADGIGRRRA
Sbjct: 53  FLFGYHLGVVNETLEIISLDLGFNGSTLAEGLVVSTCLGGAFVGSLFSGWIADGIGRRRA 112

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQLCALPMIIGASMSA T++L GMLLGR  VGTGMGIGP V +LYV+EVSP +VRG +GS
Sbjct: 113 FQLCALPMIIGASMSATTRSLEGMLLGRFLVGTGMGIGPPVVSLYVAEVSPTFVRGTFGS 172

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
            TQIA C+G++ AL +G+PAKEI GWWR+CFWV+  PAA LA  MEF AESPHWL K+GR
Sbjct: 173 FTQIATCIGLIGALLIGIPAKEIDGWWRVCFWVSAFPAAILAFLMEFSAESPHWLLKKGR 232

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
            AEAEAE E+L GGLHVK ++AEL K ERG+E DAVK S+L     F VVFIGS+LFALQ
Sbjct: 233 AAEAEAEFEKLLGGLHVKSAIAELLKLERGEEVDAVKLSDLFFGHYFRVVFIGSSLFALQ 292

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINAVFYFSSTVFK AGVP D  N+CVGIANLSGSIIAMILMDKLGRRVLLL SF G
Sbjct: 293 QLSGINAVFYFSSTVFKGAGVPPDLANMCVGIANLSGSIIAMILMDKLGRRVLLLVSFSG 352

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA +MG+Q  AA+SF S SGAL LS+GGMLL VLTFSLGAGPVP LLL+EIFP+RIRAKA
Sbjct: 353 MAASMGLQVTAASSFASESGALYLSVGGMLLCVLTFSLGAGPVPGLLLAEIFPSRIRAKA 412

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           MAVC+AVHWVINFFVGLLFLRLLEQ+GP ILYTIF +FC +AV +VK+NV+ETKGK+L+ 
Sbjct: 413 MAVCLAVHWVINFFVGLLFLRLLEQIGPQILYTIFATFCLIAVAFVKKNVVETKGKSLRS 472

Query: 481 IEMA 484
           I +A
Sbjct: 473 ISLA 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27261731|gb|AAN86062.1| sugar transporter [Citrus unshiu]

 Score =  687 bits (1772), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/489 (70%), Positives = 407/489 (83%)

Query: 1   MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
           M GR  + S MYKR SS+D    +  EETT  + NG   +  NP W  S PHVLVA +SS
Sbjct: 1   MWGRQREASMMYKRTSSRDRSSTFDVEETTALVQNGTEVENTNPSWKLSFPHVLVATLSS 60

Query: 61  FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
           FLFGYHLGVVNE LESISLDLGF+G+T+AEGLVVS CLGGAF+GS  SGWIADG+GRRRA
Sbjct: 61  FLFGYHLGVVNEPLESISLDLGFNGNTLAEGLVVSMCLGGAFIGSTLSGWIADGVGRRRA 120

Query: 121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
           FQLCALPMIIGAS+SA T+NL GMLLGR  VGTGMG+GP VAALYV+EVSP +VRG YG+
Sbjct: 121 FQLCALPMIIGASISATTRNLIGMLLGRFVVGTGMGLGPTVAALYVTEVSPPFVRGTYGA 180

Query: 181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGR 240
             QIA CLG++ +L +G+P KEI GWWRICFWV+ +PAA L L M FCAESPHWL+K+GR
Sbjct: 181 FIQIATCLGLMGSLLIGIPVKEIAGWWRICFWVSIVPAAILCLAMVFCAESPHWLYKKGR 240

Query: 241 GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
            AEAEAE E+L GG HVK S+AELSK +RGD+ D VKF EL+  R+F VVFIGSTLFALQ
Sbjct: 241 TAEAEAEFEKLLGGSHVKSSLAELSKLDRGDDGDIVKFEELLYGRHFRVVFIGSTLFALQ 300

Query: 301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
           QLSGINA+FYFSS+VFK+AG+ S   N+ VGIANL GS++AM+LMDKLGR+ LL  SF  
Sbjct: 301 QLSGINAIFYFSSSVFKSAGLSSGLANVFVGIANLLGSVVAMVLMDKLGRKALLQWSFFS 360

Query: 361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA 420
           MA++M +Q  A++S++  S +L LS+GGML+FVLTF+LGAGPVPSLLL EIFP+RIRAKA
Sbjct: 361 MAVSMAIQVAASSSYIPGSASLYLSVGGMLMFVLTFALGAGPVPSLLLPEIFPSRIRAKA 420

Query: 421 MAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           MAVCM+VHWVINFFVGLLFLRLLEQLGP +LY+IFG+FC +AV +VKRNV+ETKGK+LQE
Sbjct: 421 MAVCMSVHWVINFFVGLLFLRLLEQLGPQLLYSIFGTFCLMAVAFVKRNVVETKGKSLQE 480

Query: 481 IEMALLPQQ 489
           IE+ALLPQ+
Sbjct: 481 IEIALLPQE 489

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
TAIR|locus:2017899	495	SGB1 "SUPPRESSOR OF G PROTEIN	0.983	0.971	0.641	3.4e-164
TAIR|locus:2019554	494	AT1G67300 [Arabidopsis thalian	0.993	0.983	0.600	2.3e-149
TAIR|locus:2181422	546	PGLCT "plastidic GLC transloca	0.930	0.833	0.419	2.2e-89
TAIR|locus:2205548	524	AT1G05030 [Arabidopsis thalian	0.948	0.885	0.372	8.2e-83
TAIR|locus:2016407	488	AT1G19450 [Arabidopsis thalian	0.860	0.862	0.306	6.7e-49
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.860	0.864	0.299	5.4e-47
TIGR_CMR|CBU_0347	463	CBU_0347 "d-xylose-proton symp	0.879	0.928	0.305	4.8e-46
TAIR|locus:2009832	580	INT2 "inositol transporter 2"	0.629	0.531	0.300	7.3e-46
ZFIN|ZDB-GENE-030829-25	498	slc2a8 "solute carrier family	0.625	0.614	0.278	4e-44
UNIPROTKB|P58354	478	SLC2A8 "Solute carrier family	0.498	0.510	0.312	2.3e-43

TAIR|locus:2017899 SGB1 "SUPPRESSOR OF G PROTEIN BETA1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1598 (567.6 bits), Expect = 3.4e-164, P = 3.4e-164
 Identities = 312/486 (64%), Positives = 369/486 (75%)

Query:     1 MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISS 60
             MRGRH D     KR  SK+      K ET +R+P G GKD GNP W RSLPHVLVA ++S
Sbjct:    11 MRGRHID-----KRVPSKEFLSALDKAETAVRLPTGTGKDCGNPSWKRSLPHVLVASLTS 65

Query:    61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA 120
              LFGYHLGVVNETLESIS+DLGFSG+T+AEGLVVSTCLGGAF+GS+FSG +ADG+GRRRA
Sbjct:    66 LLFGYHLGVVNETLESISIDLGFSGNTIAEGLVVSTCLGGAFIGSLFSGLVADGVGRRRA 125

Query:   121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGS 180
             FQL ALPMI+GAS+SA T++L GMLLGR  VG GMGIGP+V ALYV+EVSPAYVRG YGS
Sbjct:   126 FQLSALPMIVGASVSASTESLMGMLLGRFLVGIGMGIGPSVTALYVTEVSPAYVRGTYGS 185

Query:   181 STQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKXXX 240
             STQIA C+G+L +LF G+PAK+ LGWWRICFW++T+PAA LA+FME C ESP WLFK   
Sbjct:   186 STQIATCIGLLGSLFAGIPAKDNLGWWRICFWISTVPAAMLAVFMELCVESPQWLFKRGR 245

Query:   241 XXXXXXXXXXXXXXXHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ 300
                            +VK +MAEL KS+RGD+AD+ K SEL+  R+F VVFIGSTLFALQ
Sbjct:   246 AAEAEAVFEKLLGGSYVKAAMAELVKSDRGDDADSAKLSELLFGRSFRVVFIGSTLFALQ 305

Query:   301 QLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG 360
             QLSGINAVFYFSSTVFK AGVPS S NICVG+ NL GS +A++LMDKLGR+VLL+GSF G
Sbjct:   306 QLSGINAVFYFSSTVFKKAGVPSASANICVGVCNLLGSTVAVVLMDKLGRKVLLIGSFAG 365

Query:   361 MAIAMGVQAIAXXXXXXXXXXXXXXXXXXXXXXXXFSLGAGPVPSLLLSEIFPNRIRAKA 420
             MA+++G+QAIA                        F+ GAGPVPSLLLSEI P R+RA A
Sbjct:   366 MAVSLGLQAIAYTSLPSPFGTLFLSVGGMLLFVLSFATGAGPVPSLLLSEICPGRLRATA 425

Query:   421 MAVCMAVHWVINFFVGXXXXXXXXXXXXXILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
             +AVC+AVHWVINFFVG             +L  IFG FC +AVI+V++NV+ETKGK+LQE
Sbjct:   426 LAVCLAVHWVINFFVGLLFLRMLEQLGSVLLNAIFGFFCVVAVIFVQKNVVETKGKSLQE 485

Query:   481 IEMALL 486
             IE++LL
Sbjct:   486 IEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2019554 AT1G67300 [Arabidopsis thaliana (taxid:3702)]

 Score = 1458 (518.3 bits), Expect = 2.3e-149, P = 2.3e-149
 Identities = 295/491 (60%), Positives = 352/491 (71%)

Query:     1 MRGRHGDVSWMYKRASSKDVDDEYGKEETTIRMPNGLGKDIG--NPPWSRSLPHVLVAII 58
             M G   + S MYKR SS+D       E+++  + N +  ++   NP W  SLPHVLVA I
Sbjct:     1 MLGLQRETSSMYKRTSSRDYSPMIDVEDSSGLLENDVDNEMETTNPSWKCSLPHVLVATI 60

Query:    59 SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR 118
             SSFLFGYHLGVVNE LESIS DLGFSG T+AEGLVVS CLGGAF+GS+FSG +ADG GRR
Sbjct:    61 SSFLFGYHLGVVNEPLESISSDLGFSGDTLAEGLVVSVCLGGAFLGSLFSGGVADGFGRR 120

Query:   119 RAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY 178
             RAFQ+CALPMI+GA +S ++ +L  MLLGR  VGTGMG+GP VAALYV+EVSPA+VRG Y
Sbjct:   121 RAFQICALPMILGAFVSGVSNSLAVMLLGRFLVGTGMGLGPPVAALYVTEVSPAFVRGTY 180

Query:   179 GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKX 238
             GS  QIA CLG++ ALF+G+P   I GWWR+CFW++TIPAA LAL M  CAESP WLFK 
Sbjct:   181 GSFIQIATCLGLMAALFIGIPVHNITGWWRVCFWLSTIPAALLALGMFLCAESPQWLFKQ 240

Query:   239 XXXXXXXXXXXXXXXXXHVKYSMAELSKSE--RGDEADAVKFSELISPRNFGVVFIGSTL 296
                              HVK +MAEL K +  + DE D V  SEL+  R+  VVFIGSTL
Sbjct:   241 GKIAEAEAEFERLLGGSHVKTAMAELYKLDLDKTDEPDVVSLSELLYGRHSRVVFIGSTL 300

Query:   297 FALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLG 356
             FALQQLSGINAVFYFSSTVFK+AGVPSD GNI VG++NL GS+IAM+LMDK+GR++LLL 
Sbjct:   301 FALQQLSGINAVFYFSSTVFKSAGVPSDLGNIFVGVSNLLGSVIAMVLMDKVGRKLLLLW 360

Query:   357 SFLGMAI-AMGVQAIAXXXXXXXXXXXXXXXXXXXXXXXXFSLGAGPVPSLLLSEIFPNR 415
             SF+GM   AM +Q  A                        F+LGAGPVP LLL EIFP+R
Sbjct:   361 SFIGMVCSAMALQVGATSSYLPHFSALCLSVGGTLVFVLTFALGAGPVPGLLLPEIFPSR 420

Query:   416 IRAKAMAVCMAVHWVINFFVGXXXXXXXXXXXXXILYTIFGSFCFLAVIYVKRNVMETKG 475
             IRAKAMA CM+VHWVINFFVG             +LY++F +FC +AV++VKRNV+ETKG
Sbjct:   421 IRAKAMAFCMSVHWVINFFVGLLFLRLLEKLGPRLLYSMFSTFCLMAVMFVKRNVIETKG 480

Query:   476 KTLQEIEMALL 486
             KTLQEIE++LL
Sbjct:   481 KTLQEIEISLL 491

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2181422 PGLCT "plastidic GLC translocator" [Arabidopsis thaliana (taxid:3702)]

 Score = 892 (319.1 bits), Expect = 2.2e-89, P = 2.2e-89
 Identities = 194/462 (41%), Positives = 270/462 (58%)

Query:    25 GKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFS 84
             G EE  I + +  GK  G       LP V VA + + LFGYHLGVVN  LE ++ DLG +
Sbjct:    87 GDEEEAIPLRSE-GKSSGTV-----LPFVGVACLGAILFGYHLGVVNGALEYLAKDLGIA 140

Query:    85 GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM 144
              +T+ +G +VS+ L GA VGS   G +AD  GR R FQL A+P+ IGA + A  +++  M
Sbjct:   141 ENTVLQGWIVSSLLAGATVGSFTGGALADKFGRTRTFQLDAIPLAIGAFLCATAQSVQTM 200

Query:   145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL 204
             ++GRL  G G+GI  A+  LY+SE+SP  +RGA GS  Q+  C+GIL AL  GLP     
Sbjct:   201 IVGRLLAGIGIGISSAIVPLYISEISPTEIRGALGSVNQLFICIGILAALIAGLPLAANP 260

Query:   205 GWWRICFWVATIPAAFLALFMEFCAESPHWLFKXXXXXXXXXXXXXXXXXXHVKYSMAEL 264
              WWR  F VA IP+  LA+ M F  ESP WL +                   V   + +L
Sbjct:   261 LWWRTMFGVAVIPSVLLAIGMAFSPESPRWLVQQGKVSEAEKAIKTLYGKERVVELVRDL 320

Query:   265 SKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD 324
             S S +G       + +L S R + VV +G+ LF  QQL+GINAV Y+S++VF++AG+ SD
Sbjct:   321 SASGQGSSEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVVYYSTSVFRSAGIQSD 380

Query:   325 -SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAXXXXXXXXXXXX 383
              + +  VG +N+ G+ +A  LMDK+GR+ LLL SF GMA++M + +++            
Sbjct:   381 VAASALVGASNVFGTAVASSLMDKMGRKSLLLTSFGGMALSMLLLSLSFTWKALAAYSGT 440

Query:   384 XXXXXXXXXXXXFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGXXXXXXX 443
                         FSLGAGPVP+LLL EIF +RIRAKA+A+ + +HW+ NF +G       
Sbjct:   441 LAVVGTVLYVLSFSLGAGPVPALLLPEIFASRIRAKAVALSLGMHWISNFVIGLYFLSVV 500

Query:   444 XXXXXXILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL 485
                    +Y  F   C LAV+Y+  NV+ETKG++L+EIE+AL
Sbjct:   501 TKFGISSVYLGFAGVCVLAVLYIAGNVVETKGRSLEEIELAL 542

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2205548 AT1G05030 [Arabidopsis thaliana (taxid:3702)]

 Score = 830 (297.2 bits), Expect = 8.2e-83, P = 8.2e-83
 Identities = 176/472 (37%), Positives = 266/472 (56%)

Query:    16 SSKDVDDEYGKEETTIRMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLE 75
             S+K  DD++   E +   P     D+G   W  + PHV VA +++FLFGYH+GV+N  + 
Sbjct:    52 STKKPDDDH---EISPVPPEKFSADLG---WLSAFPHVSVASMANFLFGYHIGVMNGPIV 105

Query:    76 SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS 135
             SI+ +LGF G+++ EGLVVS  + GAF+GS+ +G + D  G RR FQ+  +P+I+GA +S
Sbjct:   106 SIARELGFEGNSILEGLVVSIFIAGAFIGSIVAGPLVDKFGYRRTFQIFTIPLILGALVS 165

Query:   136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195
             A   +L  +L GR  VG G+G+   +  +Y+SEV+P   RG+ G+  QI  CLGI+ +L 
Sbjct:   166 AQAHSLDEILCGRFLVGLGIGVNTVLVPIYISEVAPTKYRGSLGTLCQIGTCLGIIFSLL 225

Query:   196 VGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKXXXXXXXXXXXXXXXXXX 255
             +G+PA++   WWR   +VA++P   LAL M+F  ESP WL K                  
Sbjct:   226 LGIPAEDDPHWWRTMLYVASMPGFLLALGMQFAVESPRWLCKVGRLDDAKVVIRNIWGGS 285

Query:   256 HVKYSMAELSKSERGDEADA-VKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSST 314
              V+ ++ +     +   ++   ++ EL+   +  V FIG +LF LQQ +GIN V YFSS 
Sbjct:   286 EVEKAVEDFQSVMKNSGSNLNSRWLELLDKPHSRVAFIGGSLFVLQQFAGINGVLYFSSL 345

Query:   315 VFKNAGVPSDS-GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAXX 373
              F+N G+ S +  ++ VG+ N +G++ A  L+DK GR+ LL+GS+LGMA++M +   A  
Sbjct:   346 TFQNVGITSGAQASLYVGVTNFAGALCASYLIDKQGRKKLLIGSYLGMAVSMFLIVYAVG 405

Query:   374 XXXXXXXXXXXXXXXXXXXXXXFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF 433
                                   F++GAGPV  L++ E+  NR R K M    +VHWV NF
Sbjct:   406 FPLDEDLSQSLSILGTLMYIFSFAIGAGPVTGLIIPELSSNRTRGKIMGFSFSVHWVSNF 465

Query:   434 FVGXXXXXXXXXXXXXILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL 485
              VG              +Y  FGS   LA  +     +ETKG++L+EIE++L
Sbjct:   466 LVGLFFLDLVEKYGVGTVYASFGSVSLLAAAFSHLFTVETKGRSLEEIELSL 517

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2016407 AT1G19450 [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 135/441 (30%), Positives = 217/441 (49%)

Query:    53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLG-GAFVGSMFSGWI 111
             VL+  +    FG+  G  + T  +I+ DLG    T++E  V  +    GA VG++ SG I
Sbjct:    53 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 109

Query:   112 ADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSP 171
             A+ +GR+ +  + A+P IIG    +  K+   + +GRL  G G+GI      +Y++E++P
Sbjct:   110 AEYVGRKGSLMIAAIPNIIGWLSISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 169

Query:   172 AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAES 231
               +RGA GS  Q++  +GI++A  +GL        WRI   +  +P   L   + F  ES
Sbjct:   170 QTMRGALGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGVLPCTLLIPGLFFIPES 224

Query:   232 PHWLFKXXXXXXXXXXXXXXXXX-XHVKYSMAELSKS-ERGDEADAVKFSELISPRNFGV 289
             P WL K                    +   + E+ +S     +  AV+F +L   R +  
Sbjct:   225 PRWLAKMGLTDDFETSLQVLRGFETDITVEVNEIKRSVASSSKRSAVRFVDLKRRRYYFP 284

Query:   290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-GNICVGIANLSGSIIAMILMDKL 348
             + +G  L ALQQL GIN V ++SST+F++AGV S +     VG+  +  + IA  L+DK 
Sbjct:   285 LMVGIGLLALQQLGGINGVLFYSSTIFESAGVTSSNVATFGVGVVQVVATGIATWLVDKA 344

Query:   349 GRRVLLLGSFLGMAIAMGVQAIAXXXXXXXX-------XXXXXXXXXXXXXXXXFSLGAG 401
             GRR+LL+ S +GM I++ + A+A                                SLG G
Sbjct:   345 GRRLLLMISSIGMTISLVIVAVAFYLKEFVSPDSNMYNILSMVSVVGVVAMVISCSLGMG 404

Query:   402 PVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGXXXXXXXXXXXXXILYTIFGSFCFL 461
             P+P L++SEI P  I+  A ++   ++W +++ V                +T++   C  
Sbjct:   405 PIPWLIMSEILPVNIKGLAGSIATLLNWFVSWLVTMTANMLLAWSSGGT-FTLYALVCGF 463

Query:   462 AVIYVKRNVMETKGKTLQEIE 482
              V++V   V ETKGKTL+EI+
Sbjct:   464 TVVFVSLWVPETKGKTLEEIQ 484

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
 Identities = 132/441 (29%), Positives = 213/441 (48%)

Query:    53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLG-GAFVGSMFSGWI 111
             VL+  +    FG+  G  + T  +I+ DLG    T++E  V  +    GA VG++ SG I
Sbjct:    52 VLIVALGPIQFGFTCGYSSPTQAAITKDLGL---TVSEYSVFGSLSNVGAMVGAIASGQI 108

Query:   112 ADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSP 171
             A+ IGR+ +  + A+P IIG    +  K+   + +GRL  G G+GI      +Y++E++P
Sbjct:   109 AEYIGRKGSLMIAAIPNIIGWLCISFAKDTSFLYMGRLLEGFGVGIISYTVPVYIAEIAP 168

Query:   172 AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAES 231
               +RG  GS  Q++  +GI++A  +GL        WRI   +  +P   L   + F  ES
Sbjct:   169 QNMRGGLGSVNQLSVTIGIMLAYLLGLFVP-----WRILAVLGILPCTLLIPGLFFIPES 223

Query:   232 PHWLFKXXXXXXXXXXXXXXXXX-XHVKYSMAELSKSERGD-EADAVKFSELISPRNFGV 289
             P WL K                    +   + E+ +S     + + V+F +L   R +  
Sbjct:   224 PRWLAKMGMTDEFETSLQVLRGFETDITVEVNEIKRSVASSTKRNTVRFVDLKRRRYYFP 283

Query:   290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS-DSGNICVGIANLSGSIIAMILMDKL 348
             + +G  L  LQQL GIN V ++SST+F++AGV S ++    VG   +  + I+  L+DK 
Sbjct:   284 LMVGIGLLVLQQLGGINGVLFYSSTIFESAGVTSSNAATFGVGAIQVVATAISTWLVDKA 343

Query:   349 GRRVLLLGSFLGMAIAMGVQAIAXXX-------XXXXXXXXXXXXXXXXXXXXXFSLGAG 401
             GRR+LL  S +GM I++ + A A                               FSLG G
Sbjct:   344 GRRLLLTISSVGMTISLVIVAAAFYLKEFVSPDSDMYSWLSILSVVGVVAMVVFFSLGMG 403

Query:   402 PVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGXXXXXXXXXXXXXILYTIFGSFCFL 461
             P+P L++SEI P  I+  A ++    +W  ++ +                +T++G  C  
Sbjct:   404 PIPWLIMSEILPVNIKGLAGSIATLANWFFSWLITMTANLLLAWSSGGT-FTLYGLVCAF 462

Query:   462 AVIYVKRNVMETKGKTLQEIE 482
              V++V   V ETKGKTL+E++
Sbjct:   463 TVVFVTLWVPETKGKTLEELQ 483

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TIGR_CMR|CBU_0347 CBU_0347 "d-xylose-proton symporter, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 483 (175.1 bits), Expect = 4.8e-46, P = 4.8e-46
 Identities = 137/448 (30%), Positives = 218/448 (48%)

Query:    45 PWSRSLPHVLVAIISSF---LFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGA 101
             P  +S  + ++A I++F   LFGY  GV++  +  IS +  F  S    G VVS  L GA
Sbjct:    10 PAKKSHFYWVIAFIAAFAGILFGYDTGVISGAILFISQE--FHLSPQMNGFVVSAVLIGA 67

Query:   102 FVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAV 161
             F+G++FSG +AD IGR+R   + AL  I+G ++S++T ++  +++GR+ VG  +GI    
Sbjct:    68 FLGALFSGHLADYIGRKRLLIIDALIFIVGTAISSMTVSISWLVIGRIIVGIAIGIASYS 127

Query:   162 AALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP-AKEILGWWRICFWVATIPAAF 220
             A LY+SE+SP + RGA  S  Q+A  +GI ++  V    A+     WR  F    IPAA 
Sbjct:   128 APLYISEISPPHRRGALVSLNQLAVTIGIFLSYVVDYYFARHDA--WRSMFAAGVIPAAL 185

Query:   221 LALFMEFCAESPHWLF-KXXXXXXXXXXXXXXXXXXHVKYSMAELSKSERGDEAD-AVKF 278
             L L M     SP W+F +                  H +  +  +  S +  + D    F
Sbjct:   186 LLLGMIVLPYSPRWIFSRGHEEKALWILRKLRGHGPHAEQELEHIRASLQQQKGDWRTLF 245

Query:   279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNIC----VGIAN 334
             S++I P  F  + IG  +F  QQ++GIN V Y++ T+ K  G  +    I     +G   
Sbjct:   246 SKIIRPTLF--IAIGLAVF--QQVTGINTVLYYAPTILKMTGFQASQTAILATMGIGAVL 301

Query:   335 LSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAXXXXXXXXXXXXXXXXXXXXXXX 394
             +  +II++ L+D LGRR LL      M +++ V + +                       
Sbjct:   302 VIITIISLPLIDSLGRRPLLFIGVGAMTVSLLVLSWSFKVHGHMDYMRWIAFGSLLVFIS 361

Query:   395 XFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGXXXXXXXXXXXXXILYTI 454
              FS+  GP+  L+ SEIFP R+R    ++    +W  N+ V                + I
Sbjct:   362 GFSISLGPIMWLMFSEIFPLRVRGLGASIGACTNWASNWLVTITFLTLIEYLGPSGTFFI 421

Query:   455 FGSFCFLAVIYVKRNVMETKGKTLQEIE 482
             +     + +I++  +V ETKG TL++IE
Sbjct:   422 YFIISVITLIFIYTSVPETKGVTLEQIE 449

GO:0015519 "D-xylose:hydrogen symporter activity" evidence=ISS

GO:0015753 "D-xylose transport" evidence=ISS

TAIR|locus:2009832 INT2 "inositol transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 7.3e-46, Sum P(2) = 7.3e-46
 Identities = 97/323 (30%), Positives = 157/323 (48%)

Query:    58 ISSFLFGYHLGVVNETLESISLDL-GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG 116
             I   LFGY  GV++  L  I  D      +T  + ++VS  + GA VG+   GW  D +G
Sbjct:    37 IGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLG 96

Query:   117 RRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRG 176
             RR A  +     ++GA + A   N   +++GR+FVG G+G+    A LY+SE SPA +RG
Sbjct:    97 RRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISEASPAKIRG 156

Query:   177 AYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLF 236
             A  S+       G  ++  + L   ++ G WR    +A IPA    + M    ESP WL+
Sbjct:   157 ALVSTNGFLITGGQFLSYLINLAFTDVTGTWRWMLGIAGIPALLQFVLMFTLPESPRWLY 216

Query:   237 KXXXXXXXXXXXXXXXXXXHVKYSMAELSKS------ERG--DEADAVKFSELISPRNFG 288
             +                   V+  +  L  S      E G  ++ + +K  +  + R   
Sbjct:   217 RKGREEEAKAILRRIYSAEDVEQEIRALKDSVETEILEEGSSEKINMIKLCKAKTVRRGL 276

Query:   289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIA----NLSGSIIAMIL 344
             +  +G  +F  QQ  GIN V Y+S T+ + AG  S+   + + +     N  GSII++  
Sbjct:   277 IAGVGLQVF--QQFVGINTVMYYSPTIVQLAGFASNRTALLLSLVTAGLNAFGSIISIYF 334

Query:   345 MDKLGRRVLLLGSFLGMAIAMGV 367
             +D++GR+ LL+ S  G+ I++G+
Sbjct:   335 IDRIGRKKLLIISLFGVIISLGI 357

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005366 "myo-inositol:hydrogen symporter activity" evidence=IMP;IDA

GO:0015798 "myo-inositol transport" evidence=IDA

GO:0023052 "signaling" evidence=TAS

GO:0090406 "pollen tube" evidence=TAS

GO:0006863 "purine nucleobase transport" evidence=RCA

ZFIN|ZDB-GENE-030829-25 slc2a8 "solute carrier family 2 (facilitated glucose transporter), member 8" [Danio rerio (taxid:7955)]

 Score = 330 (121.2 bits), Expect = 4.0e-44, Sum P(2) = 4.0e-44
 Identities = 88/316 (27%), Positives = 145/316 (45%)

Query:    56 AIISSFLFGYHLGVVNETLESISL--DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD 113
             A++    FG+ LG  +  +  +    DL    S        S    GA +G +  GWI +
Sbjct:    43 AVLGPLSFGFVLGYSSPAIPELRRIQDLRLQLSVEEASWFGSVVTIGAALGGLLGGWIVE 102

Query:   114 GIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY 173
              IGR+ +   CA+P I G +     +N W   +GR+  G   G+   V  LY+SE++   
Sbjct:   103 RIGRKLSLMFCAIPFIFGFTTIIAAQNHWMFYVGRVLTGLASGVTSLVVPLYISEMAHER 162

Query:   174 VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPH 233
             VRG  GS  Q+   +GI+ A   GL     L W R     ++IP   + L M F  E+P 
Sbjct:   163 VRGTLGSCVQLMVVIGIMGAYVTGL----FLDW-RWLAVASSIPPTLMLLSMCFMPETPR 217

Query:   234 WLF-KXXXXXXXXXXXXXXXXXXHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI 292
             +L  +                    ++  A +  + + +E  +    +L  P  +  + I
Sbjct:   218 FLLCQGKRREAEDALRFLRGPDAPAEWECARIEDAYKNEE-QSFSLGDLKDPGVYKPLGI 276

Query:   293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPS-DSGNICVGIANLSGSIIAMILMDKLGRR 351
             G  +  LQQ +GINA+ +++ T+F+ A   S D   + V    +  + IA ++MDK GR+
Sbjct:   277 GVMMMLLQQFTGINAIMFYAETIFEQAHFKSSDVATVIVAATQVVFTAIAALIMDKAGRK 336

Query:   352 VLLLGSFLGMAIAMGV 367
             VLL+ S + M ++  V
Sbjct:   337 VLLILSGVVMCVSEAV 352

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

UNIPROTKB|P58354 SLC2A8 "Solute carrier family 2, facilitated glucose transporter member 8" [Bos taurus (taxid:9913)]

 Score = 326 (119.8 bits), Expect = 2.3e-43, Sum P(2) = 2.3e-43
 Identities = 80/256 (31%), Positives = 124/256 (48%)

Query:   100 GAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGP 159
             GA  G +  GW+ D  GR+ +  LCALP + G ++    +NLW +L GRL  G   GI  
Sbjct:    79 GAAAGGVLGGWLLDRAGRKLSLVLCALPFVAGFAVITAAQNLWMLLGGRLLTGLACGIAS 138

Query:   160 AVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA 219
              VA +Y+SE++   VRG  GS  Q+    GIL+A   G   +     WR    +  +P +
Sbjct:   139 LVAPVYISEIAYPEVRGLLGSCVQLMVVTGILLAYLAGWVLE-----WRWLAVLGCVPPS 193

Query:   220 FLALFMEFCAESPHWLFKXXXXXXXXXXXXXXXXXXHVKYSMAELSKSERGDEADAVKFS 279
             F+ L M F  E+P +L                       Y+     +   G +      +
Sbjct:   194 FMLLLMCFMPETPRFLLSQHKHQEAMAAMQFLWG-----YAQG-WEEPPLGAQHQDFHVA 247

Query:   280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-GNICVGIANLSGS 338
             +L  P  +    IG +L A QQLSG+NAV +++ T+F+ A     S  ++ VG+  +  +
Sbjct:   248 QLRRPGVYKPFIIGISLMAFQQLSGVNAVMFYAETIFEEAKFKDSSLASVVVGVIQVLFT 307

Query:   339 IIAMILMDKLGRRVLL 354
               A ++MD+ GRR+LL
Sbjct:   308 ATAALIMDRAGRRLLL 323

GO:0030659 "cytoplasmic vesicle membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47842	GTR3_CANFA	No assigned EC number	0.3157	0.8813	0.8707	yes	no
Q07647	GTR3_RAT	No assigned EC number	0.3252	0.8793	0.8722	yes	no
P32037	GTR3_MOUSE	No assigned EC number	0.3238	0.8711	0.8640	yes	no
Q5R608	GTR3_PONAB	No assigned EC number	0.3152	0.8813	0.8689	yes	no
C0SPB2	YWTG_BACSU	No assigned EC number	0.3114	0.8548	0.9146	yes	no
P58352	GTR3_BOVIN	No assigned EC number	0.3200	0.8752	0.8663	yes	no
Q2V4B9	PLST3_ARATH	No assigned EC number	0.7181	0.9836	0.9717	yes	no
P0AEP2	GALP_ECOL6	No assigned EC number	0.3020	0.8732	0.9202	yes	no
P11169	GTR3_HUMAN	No assigned EC number	0.3173	0.8813	0.8689	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	489
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	6e-85
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	3e-84
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	5e-74
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	3e-22
TIGR00898	505	TIGR00898, 2A0119, cation transport protein	2e-18
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-14
TIGR00883	394	TIGR00883, 2A0106, metabolite-proton symporter	2e-13
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	4e-12
TIGR00891	405	TIGR00891, 2A0112, putative sialic acid transporte	9e-10
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-09
TIGR00887	502	TIGR00887, 2A0109, phosphate:H+ symporter	6e-09
PRK11551	406	PRK11551, PRK11551, putative 3-hydroxyphenylpropio	4e-08
TIGR01299	742	TIGR01299, synapt_SV2, synaptic vesicle protein SV	1e-06
COG2814	394	COG2814, AraJ, Arabinose efflux permease [Carbohyd	2e-06
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	4e-05
COG0738	422	COG0738, FucP, Fucose permease [Carbohydrate trans	6e-05
PRK12307	426	PRK12307, PRK12307, putative sialic acid transport	9e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	2e-04
PRK15075	434	PRK15075, PRK15075, citrate-proton symporter; Prov	2e-04
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	3e-04
PRK10406	432	PRK10406, PRK10406, alpha-ketoglutarate transporte	4e-04
PRK03893	496	PRK03893, PRK03893, putative sialic acid transport	0.001
PRK09874	408	PRK09874, PRK09874, drug efflux system protein Mdt	0.002

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score =  269 bits (690), Expect = 6e-85
 Identities = 167/452 (36%), Positives = 249/452 (55%), Gaps = 25/452 (5%)

Query: 54  LVAIISSFLFGYHLGVVNETLESISLDLGF------SGSTMAEGLVVSTCLGGAFVGSMF 107
           L+A I   +FGY  GV+   L   + +  F      S S+   GLVVS  L G F+G++F
Sbjct: 31  LIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALF 90

Query: 108 SGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWG---MLLGRLFVGTGMGIGPAVAAL 164
           +GW++D  GR+++  + AL  +IGA +  +         +++GR+ +G G+GI  A+  +
Sbjct: 91  AGWLSDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPM 150

Query: 165 YVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW---WRICFWVATIPAAFL 221
           Y+SE++P  +RGA  S  Q+A   GILVA   G      L     WRI   +  IPA  L
Sbjct: 151 YLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKV-SLNNTLGWRIPLGLQLIPAGLL 209

Query: 222 ALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYS---MAELSKSERGDEADAVKF 278
            L + F  ESP WL  +GR  EA   L RL G            EL   +R  E  +V+ 
Sbjct: 210 FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQP 269

Query: 279 SEL----ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVG 331
           S       + R    +F+G  L   QQ +GINA+ Y+S T+F+NAGV +D     +I VG
Sbjct: 270 SWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVG 329

Query: 332 IANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALS--LSLGGM 389
             N + + +A+ L+D+ GRR LLL    GMAI + V  I   SFV+ S   S  +++  +
Sbjct: 330 AVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFI 389

Query: 390 LLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL 449
           LLF+  F++G GPVP +++SEIFP  +R K +++ +A +W+ NF VG LF  +LE +G  
Sbjct: 390 LLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVG 449

Query: 450 ILYTIFGSFCFLAVIYVKRNVMETKGKTLQEI 481
            ++  FG    L +I+V   + ETKG+TL+EI
Sbjct: 450 GVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score =  266 bits (682), Expect = 3e-84
 Identities = 158/449 (35%), Positives = 240/449 (53%), Gaps = 17/449 (3%)

Query: 53  VLVAIISSFLFGYHLGVVNETLESISLDLGFSG---------STMAEGLVVSTCLGGAFV 103
            LVA +  FLFGY  GV+   L  I     F           ST+  GL+VS    G  +
Sbjct: 2   ALVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLI 61

Query: 104 GSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRLFVGTGMGIGPAV 161
           GS+F+G + D  GR+++  +  +  +IGA +    K  + + +++GR+ VG G+G    +
Sbjct: 62  GSLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVL 121

Query: 162 AALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW--WRICFWVATIPAA 219
             +Y+SE++P  +RGA GS  Q+    GILVA  +GL   +      WRI   +  +PA 
Sbjct: 122 VPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAI 181

Query: 220 FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAE-LSKSERGDEADAVKF 278
            L + + F  ESP WL  +G+  EA A L +L G   V   + E     ER  EA+   +
Sbjct: 182 LLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSDVDQEIQEEKDSLERSVEAEKASW 241

Query: 279 SELISPRNF-GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-GNICVGIANLS 336
            EL   +     + +G  L   QQL+GINA+FY+S T+F+  G+       I VG+ N  
Sbjct: 242 LELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGLSDSLLVTIIVGVVNFV 301

Query: 337 GSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTF 396
            + IA+ L+D+ GRR LLL    GMAI   V  +A      S GA  +++  +LLF+  F
Sbjct: 302 FTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGAGIVAIVFILLFIAFF 361

Query: 397 SLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFG 456
           +LG GPVP +++SE+FP  +R KAMA+  A +W+ NF +G LF  +   +G  + + +F 
Sbjct: 362 ALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYV-FLVFA 420

Query: 457 SFCFLAVIYVKRNVMETKGKTLQEIEMAL 485
               L +++V   V ETKG+TL+EI+   
Sbjct: 421 GLLVLFILFVFFFVPETKGRTLEEIDELF 449

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score =  241 bits (616), Expect = 5e-74
 Identities = 144/466 (30%), Positives = 225/466 (48%), Gaps = 46/466 (9%)

Query: 53  VLVAIISSFLFGYHLGVVNETLESI------SLDLGFSGSTMAEGLVVSTCLGGAFVGSM 106
            LVA +   LFGY   V++ T+ES+        +L  S +    G  V++ L G  +G  
Sbjct: 14  TLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGA 73

Query: 107 FSGWIADGIGRRRAFQLCALPMIIGASMSA------ITKN------LWGMLLGRLFVGTG 154
             G+ ++  GRR + ++ A+   I A  SA       +        +   ++ R+  G G
Sbjct: 74  LGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIG 133

Query: 155 MGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFV--GLPAKEILGW-----W 207
           +G+   ++ +Y++E++PA++RG   S  Q A   G LV  FV   +       W     W
Sbjct: 134 VGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGW 193

Query: 208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS 267
           R  F    IPA    + + F  E+P +L  RG+  +AE  L ++ G      ++ E+  S
Sbjct: 194 RYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLATQALQEIKHS 253

Query: 268 ERGDEADAVKFSELISPRNFG--VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS 325
               +       +L+    FG  V+ IG  L   QQ  GIN V Y++  +FK  G  +D 
Sbjct: 254 L---DHGRKTGGKLLM---FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDI 307

Query: 326 G---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL 382
                I VG+ NL+ +++A++ +DK GR+ L +   LGMAI M     A  +      AL
Sbjct: 308 ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367

Query: 383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF--- 439
                 ML +V  F++  GPV  +LLSEIFPN IR KA+A+ +A  W+ N+FV   F   
Sbjct: 368 L----SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMM 423

Query: 440 ---LRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIE 482
                L+        Y I+G    LA +++ + V ETKGKTL+E+E
Sbjct: 424 DKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469

Length = 479

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 98.2 bits (245), Expect = 3e-22
 Identities = 86/395 (21%), Positives = 135/395 (34%), Gaps = 31/395 (7%)

Query: 43  NPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAF 102
            P        ++++ +   + GY L  +     +IS + G     +  G + S  L G  
Sbjct: 9   QPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMA 66

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVA 162
            G++F G +AD IGRRR      L   +   + A+  N+  +L+ R   G G+G      
Sbjct: 67  FGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNL 126

Query: 163 ALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLA 222
              VSE +P   RG           +G  V  F+      + G WR  F+V  I    L 
Sbjct: 127 NALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-WRSLFYVGGIAPLLLL 185

Query: 223 LF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVK--FS 279
           L  M F  ES  +L  +                     S     K+ +G +    K  F 
Sbjct: 186 LLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQ 245

Query: 280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSST----VFKNAGVPSDSGNICVGIAN- 334
                     V +    F L          YF +     +    G           + N 
Sbjct: 246 G---KTARITVLLWLLYFMLL------VGVYFLTNWLPKLMVELGFSLSLAATGGALFNF 296

Query: 335 --LSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLF 392
             + GSII   L D+LG RV  L   LG   A+    +  ++  S +  L      +   
Sbjct: 297 GGVIGSIIFGWLADRLGPRVTALLLLLGAVFAV----LVGSTLFSPTLLLL-----LGAI 347

Query: 393 VLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAV 427
              F  G       L++  +P  IRA  +   + +
Sbjct: 348 AGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGI 382

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 99/394 (25%), Positives = 157/394 (39%), Gaps = 41/394 (10%)

Query: 100 GAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGM-GIG 158
           G  +GS   G+++D  GR++   L  L   +   ++A + N    L+ RL VG G+ GI 
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIW 198

Query: 159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPA 218
                L   E  P   R   G+  Q+   LG+++   V     +    WR      ++P 
Sbjct: 199 VQAVVLNT-EFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPT 253

Query: 219 AFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF 278
               L   F  ESP WL  +GR  EA   L+R+      K     LS S   D + + K 
Sbjct: 254 FLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQ 313

Query: 279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICV-----GIA 333
              +    F    +  T   L  L    A  Y+   +     + +  GNI +     G+ 
Sbjct: 314 YSFL--DLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLD----LGNLGGNIYLDLFISGLV 367

Query: 334 NLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA--TSFVSSSGALSLSLGGMLL 391
            L   +I ++L+D+LGRR  +  S L   +A+ +         F+ ++ A+    G    
Sbjct: 368 ELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSA 427

Query: 392 FVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC--MAVHWVINFFVGLLFLRLLEQLG-- 447
           F + +         L  +E++P  +R   + VC  MA        VG +    L  LG  
Sbjct: 428 FQMVY---------LYTAELYPTVVRNLGVGVCSTMAR-------VGSIISPFLVYLGEK 471

Query: 448 -PLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
              +   +FG    LA I +   + ETKG  L E
Sbjct: 472 WLFLPLVLFGGLALLAGI-LTLFLPETKGVPLPE 504

[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 56/173 (32%), Positives = 84/173 (48%), Gaps = 3/173 (1%)

Query: 53  VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIA 112
           +L+  +  FL G   G+++  L  ++ DLG S S    GL+VS    G  +GS+ +G+++
Sbjct: 1   LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLS 58

Query: 113 DGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA 172
           D  GRRR   L  L   +G+ + A   +LW +L+GR  +G G G     AA  ++E  P 
Sbjct: 59  DRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPP 118

Query: 173 YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFM 225
             RG           LG L+   +G    E LG WR  F +  I    LAL +
Sbjct: 119 KERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLILAILGLLLALLL 170

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 78/390 (20%), Positives = 149/390 (38%), Gaps = 76/390 (19%)

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKN-----LWG---MLLGRLFVGTG 154
           +G++  G   D IGR++   +  L M IG  +  +  +     +W    +LL RL  G  
Sbjct: 50  LGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFS 109

Query: 155 MGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------W-W 207
           +G     AALY++E +P   RG YGS  Q+ A +G+L+A    L    +LG      W W
Sbjct: 110 LGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGW 169

Query: 208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELS-- 265
           RI F V    +A L L                              GL+++ ++ E    
Sbjct: 170 RIPFLV----SAVLVLI-----------------------------GLYLRRNLEETPVF 196

Query: 266 -KSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVF------KN 318
            K++   +      +E ++ ++     +G  L             ++  T +      + 
Sbjct: 197 EKAQEKHKKKRGPIAETLT-KHRKPFLLGLGLVIAT------TTTFYLITTYLPTYLTQT 249

Query: 319 AGVPSDSGNICVGIANLSGSIIAMI---LMDKLGRRVLLLGSFLGMAIAMGVQAIAATSF 375
            G+ ++S  + + ++ +   I   +   L D++GRR       +   +   + A+     
Sbjct: 250 LGLSANSALLVLMLSLILFFITIPLSGALSDRIGRR----PVLIIFTVLAALLAVPLLMA 305

Query: 376 VSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF-- 433
           +  SG+ +L    +L   L   +  GP+ S  L E+FP  +R    ++   +   I    
Sbjct: 306 LLDSGSFTLFFFLVLGMALIGGMYTGPMGS-FLPELFPTEVRYTGASLAYNLAGAIFGGF 364

Query: 434 --FVGLLFLRLLEQLGPLILYTIFGSFCFL 461
             ++    + +      +  Y    +   L
Sbjct: 365 APYIAAALVAMTGDWYAIGYYLAALALIGL 394

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 67.1 bits (164), Expect = 4e-12
 Identities = 71/350 (20%), Positives = 129/350 (36%), Gaps = 42/350 (12%)

Query: 77  ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA 136
           ++ DLG S + +  GL+++    G  +    +G ++D  GRRR   +  L   +G  +  
Sbjct: 23  LAEDLGISPTEI--GLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLL 80

Query: 137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFV 196
              +LW +L+ R+  G G G     AA  +++  P   RG           LG  +   +
Sbjct: 81  FASSLWLLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLL 140

Query: 197 GLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLH 256
           G     + G WR  F +  I A   A+                               L 
Sbjct: 141 GGLLASLFG-WRAAFLILAILALLAAVLAALL--------------------------LP 173

Query: 257 VKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVF 316
                ++  K      A  V   +L+       + +   LF         A+  +     
Sbjct: 174 RPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGF----AFFALLTYLPLYQ 229

Query: 317 KNAGVPSDSGNICVGIANLSGSIIAMI---LMDKLGRRVLLLGSFLGMAIAMGVQAIAAT 373
           +  G+ +    + +G+A L G+I  ++   L D+LGRR  LL + L + +A         
Sbjct: 230 EVLGLSALLAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAA-----LGL 284

Query: 374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV 423
           + +S + +    L  +LL      L    + + L+S++ P   R  A  +
Sbjct: 285 ALLSLTESSLWLLVALLLLGFGAGLVFPALNA-LVSDLAPKEERGTASGL 333

Length = 346

>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter

 Score = 60.3 bits (146), Expect = 9e-10
 Identities = 73/323 (22%), Positives = 112/323 (34%), Gaps = 28/323 (8%)

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVA 162
            G++  G   D  GRR       +    G            M + RL +G GMG     +
Sbjct: 62  FGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSS 121

Query: 163 ALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG-WWRICFWVATIPAAFL 221
           A YV E  P ++R            +G +VA  V      + G  WR  F+++ +P  F 
Sbjct: 122 AAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA 181

Query: 222 ALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHV--KYSMAELSKSERGDEADAVKFS 279
               +   E+  W  K    A     ++ L+GG H      M   +   +        F 
Sbjct: 182 LWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTLAAAMVQSAGKRWPTFV 241

Query: 280 ELISPRNFGVVFIGSTLF--ALQQL--SGINAVFYFSSTVFKNAGVPSDSGNICVGIANL 335
            L+      V+ + + L+   +Q L  + + A    S     N  V S+ G I       
Sbjct: 242 YLV------VLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIV------ 289

Query: 336 SGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLT 395
            G  +   L D LGRR   +      ++  G Q +    F   +    L LG     +L 
Sbjct: 290 -GGCVFGFLGDWLGRRKAYV-----CSLLAG-QLLIIPVFAIGANVAVLGLGLFFQQMLV 342

Query: 396 FSLGAGPVPSLLLSEIFPNRIRA 418
              G   +    L E FP   RA
Sbjct: 343 Q--GIWGILPKHLGEYFPTDQRA 363

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 36/182 (19%), Positives = 66/182 (36%), Gaps = 14/182 (7%)

Query: 290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS----GNICVGIANLSGSIIAMILM 345
           + +   L       G   +  +     +     S +         G+  + G+++  +L 
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235

Query: 346 DKLGRR-VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVP 404
           D+LGRR +LLL   L  A+ + + A+A +  +     L L  G    F    +L      
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTL------ 289

Query: 405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVI 464
               SE+ P   R  A  +      +      LL   LL+  G   ++ I  +   LA +
Sbjct: 290 ---ASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAAL 346

Query: 465 YV 466
            +
Sbjct: 347 LL 348

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 101/499 (20%), Positives = 174/499 (34%), Gaps = 87/499 (17%)

Query: 53  VLVAIISSFLFGYHLGVVN---ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSG 109
           +++A +  F   Y L  ++   + L  +         +     V  +   G   G +F G
Sbjct: 18  IVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFG 77

Query: 110 WIADGIGRRRAFQL-------CALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVA 162
           W+AD +GR+R + +         +   +    S  +         R ++G G+G    ++
Sbjct: 78  WLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFW-RFWLGVGIGGDYPLS 136

Query: 163 ALYVSEVSPAYVRGAYGSSTQIAACLGIL----VALFV------------------GLPA 200
           A+  SE +    RGA  ++       GIL    VAL V                  G   
Sbjct: 137 AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCV 196

Query: 201 KEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYS 260
             +   WRI      +PA     F     E+P +     +  E  A        + ++  
Sbjct: 197 PAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIEAE 256

Query: 261 MAELSKSERGDEADAVKFSELIS---PRNFGVVFIG--STLFALQQLSGINAVFY----F 311
             E+ K+    E     +S+  +       G   +G   + F L      +  FY     
Sbjct: 257 PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLL------DIAFYGVNLN 310

Query: 312 SSTVFKNAG-VPSDSG--------NICVG--IANLSGSI----IAMILMDKLGRRVLLLG 356
              +    G  P  +            VG  I  L+G++    + + L+D +GR+ + L 
Sbjct: 311 QKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLM 370

Query: 357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGML-LFVLTF---SLGAGPVPSLLLSEIF 412
            F  + +   V   A            LS  G L ++VL     + G      ++  E+F
Sbjct: 371 GFFILTVLFFVLGFAYN---------HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVF 421

Query: 413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT----------IFGSFCFLA 462
           P R R+ A  +  A            FL L +   P   Y           IF  F FL 
Sbjct: 422 PTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLG 481

Query: 463 VIYVKRNVMETKGKTLQEI 481
           +++    + ETKGK+L+E+
Sbjct: 482 ILFTLL-IPETKGKSLEEL 499

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502

>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

 Score = 55.0 bits (133), Expect = 4e-08
 Identities = 46/174 (26%), Positives = 70/174 (40%), Gaps = 4/174 (2%)

Query: 83  FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLW 142
           F       G   S  + G   G++  G +AD IGR+R   +      + +  +A   +  
Sbjct: 45  FGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP 104

Query: 143 GMLLGRLFVGTGMGIG-PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK 201
            +L+ RL  G G+G   P + AL  SE     +RG   S        G  +A  +G+ A 
Sbjct: 105 SLLVARLLTGVGLGGALPNLIAL-TSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAA 163

Query: 202 EILGWWRICFWVATI-PAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGG 254
                WR  F+V  + P   + L M +  ES  +    G G +    L  LFG 
Sbjct: 164 GDAA-WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGE 216

Length = 406

>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2

 Score = 50.7 bits (121), Expect = 1e-06
 Identities = 48/193 (24%), Positives = 73/193 (37%), Gaps = 14/193 (7%)

Query: 64  GYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL 123
           G  + VV   L S   DL    S   +G++      G  VG+ F G +AD +GR++   +
Sbjct: 180 GVEVFVVGFVLPSAEKDLCIPDS--GKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLI 237

Query: 124 CALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ 183
           C       A  S+  +     L  RL  G G+G    +   Y +E      RG + S   
Sbjct: 238 CLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLC 297

Query: 184 IAACLGILVALFVGLPAKEILGW------------WRICFWVATIPAAFLALFMEFCAES 231
           +   +G + A  +        GW            WR+   V   P  F    + F  ES
Sbjct: 298 MFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPES 357

Query: 232 PHWLFKRGRGAEA 244
           P +  + G+  EA
Sbjct: 358 PRFFLENGKHDEA 370

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742

>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]

 Score = 49.9 bits (120), Expect = 2e-06
 Identities = 71/354 (20%), Positives = 125/354 (35%), Gaps = 58/354 (16%)

Query: 53  VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIA 112
           +L   +++F  G    V    L  I+ DLG S    A G +++    G  +G+     + 
Sbjct: 15  LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEG--AAGQLITAYALGVALGAPLLALLT 72

Query: 113 DGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA 172
             + RRR         I+   +SA+  +   +LL R   G   G+  ++AA   + + P 
Sbjct: 73  GRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP 132

Query: 173 YVRGAYGSSTQIAACLGILVALFVGLPAKEILG---WWRICFWVATIPAAFLALFMEFCA 229
             R   G +  +    G+ +A  +G+P    LG    WR  F    + A    L +    
Sbjct: 133 GKR---GRALALVF-TGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK-- 186

Query: 230 ESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGV 289
                L            L  L   L                             R  GV
Sbjct: 187 ----LLPPSEISGSLPGPLRTLLRLL-----------------------------RRPGV 213

Query: 290 VFIGSTLFALQQLSGINAVF-YFSSTVFKNAGVPSDSGNIC---VGIANLSGSIIAMILM 345
           +      F    ++G  A++ Y    +   AG    + ++     GIA   G+++   L 
Sbjct: 214 LLGLLATFLF--MTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLA 271

Query: 346 DKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLG 399
           D+  RR L+         A+ + A+A  +   +  + +L+L  + L+   FS  
Sbjct: 272 DRGPRRALIA--------ALLLLALALLALTFTGASPALALALLFLWGFAFSPA 317

Length = 394

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 1/121 (0%)

Query: 100 GAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGP 159
           G  + S  SG + D  GR+    +     ++  +M A++ N+  +++ R   G G     
Sbjct: 10  GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFAL 69

Query: 160 AVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA 219
              A  ++++ P   RG           LG L+   +G    + LG WR  F    I A 
Sbjct: 70  VAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILAL 128

Query: 220 F 220
            
Sbjct: 129 A 129

Length = 141

>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and metabolism]

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 76/414 (18%), Positives = 141/414 (34%), Gaps = 53/414 (12%)

Query: 83  FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM--SAITKN 140
           F  +     L+     GG F+ S+ +G +   +G +    L  L   +GA++   A +  
Sbjct: 43  FDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102

Query: 141 LWGMLLGRLFV-GTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP 199
            +G  L  LF+  +G+G+    A  YV+ +          +  Q    LG ++   +G  
Sbjct: 103 SYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLG-- 160

Query: 200 AKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKY 259
           +  IL    +    A I A   A      A S  + +    G      +  L      K 
Sbjct: 161 SSLILSGVALTMSAAQILAIKGAD-----ASSVQFPYLILAGLLVLLAVLILL----SKL 211

Query: 260 SMAELSKSERGDEADAVKFSELISPR-NFGVVFI----------GSTLFA-LQQLSGINA 307
              +++    G    A   S   +     GV+ I          GS L + L++L G+N 
Sbjct: 212 PDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNE 271

Query: 308 VFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMG 366
                   F   G              + G  I   LM ++   + L   + + + + + 
Sbjct: 272 QQAAYYLSFFWVGF-------------MVGRFIGSALMSRIKPEKYLAFYALIAILLLLA 318

Query: 367 VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMA 426
           V        V+      + L   ++F   FSL           +         +  + MA
Sbjct: 319 V--ALIGGVVALYALFLIGLFNSIMFPTIFSLA---------LKNLGEHTSVGSGLLVMA 367

Query: 427 VHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE 480
           +  V    +  L   + +  G  + + I    C+L V++      ++KG+   E
Sbjct: 368 I--VGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFALIGKKSKGRLSAE 419

Length = 422

>gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 43/195 (22%), Positives = 73/195 (37%), Gaps = 12/195 (6%)

Query: 43  NPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFS---GSTMAEGLVVSTCLG 99
             P   +L     A +     G+   ++   +  I  DLG +   G+ +A    +    G
Sbjct: 13  TRPQKNAL---FSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFG 69

Query: 100 GAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGP 159
           GA  G +     AD  GR+       +   +G  +S +   +  + L R  VG GM    
Sbjct: 70  GALFGLL-----ADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEY 124

Query: 160 AVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA 219
           A A+ Y  E  P +++    +       +G ++A +      E  G WR  F+V  +P  
Sbjct: 125 ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-WRAAFFVGLLPVL 183

Query: 220 FLALFMEFCAESPHW 234
            +        ES  W
Sbjct: 184 LVIYIRARAPESKEW 198

Length = 426

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 2/177 (1%)

Query: 50  LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSG 109
           L  +L+  ++ FL  +    +   L     ++    +  A GL++S    G  +G++  G
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEA-GLLLSLFGLGGILGALLGG 232

Query: 110 WIADGIGRRRAFQLCALP-MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSE 168
            ++D +GRRR   L  L    +G  + A+  +L  +L+  L +G G+G          SE
Sbjct: 233 LLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASE 292

Query: 169 VSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFM 225
           ++P   RG           LG  +   +     +  G+  +   +A +      L +
Sbjct: 293 LAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|237902 PRK15075, PRK15075, citrate-proton symporter; Provisional

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 82/347 (23%), Positives = 132/347 (38%), Gaps = 82/347 (23%)

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI-----TKNLWG---MLLGRLFVGTG 154
           +G++  G   D +GRR+   +    M  G  + A      T  L     +LLGRL  G  
Sbjct: 71  LGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFS 130

Query: 155 MGIGPAVAALYVSEVSPAYVRGAYGS----STQIA----ACLGILVALFVGLPAKEILGW 206
            G+     ++Y++E++    +G Y S    S Q+A    A LG    L   L   ++  W
Sbjct: 131 AGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLG--YLLNQWLSPAQMAEW 188

Query: 207 -WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELS 265
            WRI F +  +   F+ L      E+  +L ++ R                   SM E+ 
Sbjct: 189 GWRIPFLIGCLIVPFIFLIRRSLEETEEFLARKHRP------------------SMREIF 230

Query: 266 KSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFY--------FSSTVFK 317
           +S                  N+ +V  G  + A+  +S     FY        F  TV  
Sbjct: 231 RSLA---------------ANWRIVLAGMLMVAMTTVS-----FYLITVYTPTFGKTVLH 270

Query: 318 NAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVS 377
            +   S    +CVG++N     I   L D++GRR +L    +   +   + A  A S++ 
Sbjct: 271 LSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVL----IAFTVLAILTAYPALSWLV 326

Query: 378 SSGALSLSLGGMLLFVLTFSL------GAGPVPSLLLSEIFPNRIRA 418
           +    + S   ML   L  S       GA  V    L+E+ P  +R 
Sbjct: 327 A----APSFARMLAVELWLSFLYGSYNGAMVVA---LTEVMPAEVRT 366

Length = 434

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 5/146 (3%)

Query: 51  PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGW 110
             VL  +++  LFG+    +   L      LG S      GL++        +G +  G 
Sbjct: 202 DPVLWLLLALLLFGFAFFALLTYLPLYQEVLGLSALLA--GLLLGLAGLLGAIGRLLLGR 259

Query: 111 IADGIGRRRAFQLCALPMIIGA---SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVS 167
           ++D +GRRR   L  L +I+ A   ++ ++T++   +L+  L +G G G+        VS
Sbjct: 260 LSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLLVALLLLGFGAGLVFPALNALVS 319

Query: 168 EVSPAYVRGAYGSSTQIAACLGILVA 193
           +++P   RG        A  LG  + 
Sbjct: 320 DLAPKEERGTASGLYNTAGSLGGALG 345

Length = 346

>gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 83/346 (23%), Positives = 136/346 (39%), Gaps = 64/346 (18%)

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI-----TKNLWG---MLLGRLFVGTG 154
           +G    G IAD  GR+++  +    M  G+ + A      T   W    +LL RLF G  
Sbjct: 78  IGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLS 137

Query: 155 MGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL------GW-W 207
           +G     +A Y+SEV+    +G Y S   +    G L+AL V +  ++ L       W W
Sbjct: 138 VGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGW 197

Query: 208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS 267
           RI F +  +  A +AL++                                +  + E S+ 
Sbjct: 198 RIPFALGAV-LAVVALWL--------------------------------RRQLDETSQQ 224

Query: 268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGN 327
           E     +A     L   R   ++ +G T  A   L       Y    +   AG+     N
Sbjct: 225 ETRALKEAGSLKGLWRNRRAFIMVLGFT--AAGSLCFYTFTTYMQKYLVNTAGM---HAN 279

Query: 328 ICVGIANLSGSIIAMI------LMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA 381
           +  GI   +  +  +I      L DK+GRR  +L  F  +A    V  ++A   VSS   
Sbjct: 280 VASGIMTAALFVFMLIQPLIGALSDKIGRRTSML-CFGSLAALFTVPILSALQNVSSP-Y 337

Query: 382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAV 427
            +  L    L +++F      +  +L +E+FP ++RA  + +  AV
Sbjct: 338 AAFGLVMCALLIVSFYTS---ISGILKAEMFPAQVRALGVGLSYAV 380

Length = 432

>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 42/164 (25%), Positives = 67/164 (40%), Gaps = 8/164 (4%)

Query: 94  VSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGT 153
           +S   GG  +G+M      D  GRR A  +  +   +G          W + + RL +G 
Sbjct: 66  ISRWFGGLLLGAM-----GDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGM 120

Query: 154 GMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV 213
           GM      +A YV E  P ++R            +G +VA  V      + G WR  F++
Sbjct: 121 GMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-WRALFFI 179

Query: 214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLH 256
             +P  F AL++ +   E+  W  K    A     ++ L+ G H
Sbjct: 180 GILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEH 222

Length = 496

>gnl|CDD|182127 PRK09874, PRK09874, drug efflux system protein MdtG; Provisional

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 46  WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGST---MAEGLVVSTCLGGAF 102
           W R+L    VA +  FL G    +V   L      LG +G +   M  GLV S     + 
Sbjct: 12  WKRNL---TVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSA 68

Query: 103 VGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVA 162
           + S F G +AD  GR+      AL M I   +  + +N+W  L+ R  +G   G  P   
Sbjct: 69  IASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGGFVPNAN 128

Query: 163 ALYVSEV 169
           AL  ++V
Sbjct: 129 ALIATQV 135

Length = 408

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	489
KOG0569	485	consensus Permease of the major facilitator superf	100.0
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	100.0
PRK10077	479	xylE D-xylose transporter XylE; Provisional	100.0
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	100.0
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	100.0
KOG0254	513	consensus Predicted transporter (major facilitator	100.0
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	100.0
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	100.0
TIGR00898	505	2A0119 cation transport protein.	100.0
PRK10642	490	proline/glycine betaine transporter; Provisional	100.0
PRK03545	390	putative arabinose transporter; Provisional	100.0
PRK12307	426	putative sialic acid transporter; Provisional	100.0
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	100.0
PRK11663	434	regulatory protein UhpC; Provisional	100.0
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	100.0
PRK09705	393	cynX putative cyanate transporter; Provisional	100.0
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	100.0
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	100.0
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	100.0
PRK10406	432	alpha-ketoglutarate transporter; Provisional	100.0
PRK14995	495	methyl viologen resistance protein SmvA; Provision	100.0
TIGR00891	405	2A0112 putative sialic acid transporter.	100.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	100.0
PRK09952	438	shikimate transporter; Provisional	100.0
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	100.0
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	100.0
TIGR00893	399	2A0114 d-galactonate transporter.	100.0
PRK05122	399	major facilitator superfamily transporter; Provisi	100.0
PRK10213	394	nepI ribonucleoside transporter; Reviewed	100.0
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	100.0
PRK15075	434	citrate-proton symporter; Provisional	100.0
PRK03893	496	putative sialic acid transporter; Provisional	100.0
PRK10091	382	MFS transport protein AraJ; Provisional	100.0
PRK10489	417	enterobactin exporter EntS; Provisional	100.0
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	100.0
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	100.0
PRK12382	392	putative transporter; Provisional	100.0
KOG1330	493	consensus Sugar transporter/spinster transmembrane	100.0
PRK10504	471	putative transporter; Provisional	100.0
PRK03633	381	putative MFS family transporter protein; Provision	100.0
TIGR00892	455	2A0113 monocarboxylate transporter 1.	100.0
PRK03699	394	putative transporter; Provisional	100.0
PLN00028	476	nitrate transmembrane transporter; Provisional	100.0
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	100.0
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	100.0
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	100.0
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	100.0
TIGR00895	398	2A0115 benzoate transport.	100.0
PRK09874	408	drug efflux system protein MdtG; Provisional	100.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	100.0
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	100.0
TIGR00900	365	2A0121 H+ Antiporter protein.	100.0
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	100.0
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	100.0
PRK15403	413	multidrug efflux system protein MdtM; Provisional	100.0
PRK11043	401	putative transporter; Provisional	100.0
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	100.0
PRK10473	392	multidrug efflux system protein MdtL; Provisional	100.0
PRK11195	393	lysophospholipid transporter LplT; Provisional	100.0
PRK10133	438	L-fucose transporter; Provisional	100.0
KOG2532	466	consensus Permease of the major facilitator superf	100.0
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	100.0
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	100.0
PRK10054	395	putative transporter; Provisional	100.0
PRK11010	491	ampG muropeptide transporter; Validated	100.0
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	100.0
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.98
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.98
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.98
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.98
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.98
KOG2533	495	consensus Permease of the major facilitator superf	99.97
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.97
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.97
PRK15011	393	sugar efflux transporter B; Provisional	99.97
PRK09528	420	lacY galactoside permease; Reviewed	99.97
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.97
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.97
PRK11902	402	ampG muropeptide transporter; Reviewed	99.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	99.97
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.96
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.96
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.96
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.96
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.96
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.96
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.95
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.95
TIGR00805	633	oat sodium-independent organic anion transporter.	99.95
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.95
KOG2615	451	consensus Permease of the major facilitator superf	99.95
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.95
TIGR00901	356	2A0125 AmpG-related permease.	99.95
PTZ00207	591	hypothetical protein; Provisional	99.94
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.93
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.92
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	99.91
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	99.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	99.9
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.9
PRK09669	444	putative symporter YagG; Provisional	99.9
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	99.89
KOG2563	480	consensus Permease of the major facilitator superf	99.89
PF13347	428	MFS_2: MFS/sugar transport protein	99.87
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.86
PRK10429	473	melibiose:sodium symporter; Provisional	99.86
PRK09848	448	glucuronide transporter; Provisional	99.85
PRK11462	460	putative transporter; Provisional	99.83
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.83
COG2211	467	MelB Na+/melibiose symporter and related transport	99.82
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.81
KOG2325	488	consensus Predicted transporter/transmembrane prot	99.81
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.76
KOG3626	735	consensus Organic anion transporter [Secondary met	99.74
PRK10642	490	proline/glycine betaine transporter; Provisional	99.73
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	99.71
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	99.69
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
KOG2816	463	consensus Predicted transporter ADD1 (major facili	99.61
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.58
PRK15011	393	sugar efflux transporter B; Provisional	99.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.56
PRK09528	420	lacY galactoside permease; Reviewed	99.56
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	99.55
PRK05122	399	major facilitator superfamily transporter; Provisi	99.55
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.54
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.52
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.51
PRK12382	392	putative transporter; Provisional	99.51
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.5
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.49
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.48
PRK09874	408	drug efflux system protein MdtG; Provisional	99.46
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	99.45
PRK03633	381	putative MFS family transporter protein; Provision	99.43
TIGR00893	399	2A0114 d-galactonate transporter.	99.43
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	99.42
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.42
PRK03699	394	putative transporter; Provisional	99.41
PRK03893	496	putative sialic acid transporter; Provisional	99.41
PRK09705	393	cynX putative cyanate transporter; Provisional	99.41
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.4
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.4
PRK10054	395	putative transporter; Provisional	99.39
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.39
PRK10489	417	enterobactin exporter EntS; Provisional	99.39
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.38
TIGR00891	405	2A0112 putative sialic acid transporter.	99.38
PRK11663	434	regulatory protein UhpC; Provisional	99.38
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.38
PRK03545	390	putative arabinose transporter; Provisional	99.37
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.37
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.37
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.36
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.35
TIGR00895	398	2A0115 benzoate transport.	99.35
PRK09952	438	shikimate transporter; Provisional	99.35
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.33
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.31
TIGR00900	365	2A0121 H+ Antiporter protein.	99.31
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.31
PLN00028	476	nitrate transmembrane transporter; Provisional	99.3
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.29
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.28
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	99.28
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.28
PRK10091	382	MFS transport protein AraJ; Provisional	99.28
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.27
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.27
KOG3762	618	consensus Predicted transporter [General function	99.27
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.27
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.27
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.27
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.26
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.26
KOG2504	509	consensus Monocarboxylate transporter [Carbohydrat	99.26
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.26
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.26
PRK12307	426	putative sialic acid transporter; Provisional	99.25
PRK10504	471	putative transporter; Provisional	99.25
PRK11010	491	ampG muropeptide transporter; Validated	99.23
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	99.23
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.23
KOG0569	485	consensus Permease of the major facilitator superf	99.22
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.22
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.22
TIGR00898	505	2A0119 cation transport protein.	99.21
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.21
KOG1330	493	consensus Sugar transporter/spinster transmembrane	99.2
KOG3098	461	consensus Uncharacterized conserved protein [Funct	99.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	99.19
PRK11043	401	putative transporter; Provisional	99.19
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.18
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.17
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.17
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.16
PRK15075	434	citrate-proton symporter; Provisional	99.16
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.15
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.15
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.15
COG2270	438	Permeases of the major facilitator superfamily [Ge	99.14
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.14
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.11
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.09
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.08
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.07
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	99.05
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	99.04
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.04
KOG2615	451	consensus Permease of the major facilitator superf	99.03
TIGR00901	356	2A0125 AmpG-related permease.	99.01
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.0
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.99
PRK11902	402	ampG muropeptide transporter; Reviewed	98.99
KOG4686	459	consensus Predicted sugar transporter [Carbohydrat	98.99
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	98.98
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.97
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	98.97
KOG0637	498	consensus Sucrose transporter and related proteins	98.97
COG0477	338	ProP Permeases of the major facilitator superfamil	98.97
KOG3764	464	consensus Vesicular amine transporter [Intracellul	98.96
TIGR00805	633	oat sodium-independent organic anion transporter.	98.96
PRK09848	448	glucuronide transporter; Provisional	98.95
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.93
PF13347	428	MFS_2: MFS/sugar transport protein	98.93
KOG0253	528	consensus Synaptic vesicle transporter SV2 (major	98.93
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.92
PRK10133	438	L-fucose transporter; Provisional	98.91
PTZ00207	591	hypothetical protein; Provisional	98.89
KOG3810	433	consensus Micronutrient transporters (folate trans	98.88
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	98.87
PRK10429	473	melibiose:sodium symporter; Provisional	98.86
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.84
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	98.82
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.77
PRK09669	444	putative symporter YagG; Provisional	98.75
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	98.74
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	98.7
KOG0255	521	consensus Synaptic vesicle transporter SVOP and re	98.68
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	98.68
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	98.67
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.65
KOG2532	466	consensus Permease of the major facilitator superf	98.64
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	98.62
COG2211	467	MelB Na+/melibiose symporter and related transport	98.62
KOG0254	513	consensus Predicted transporter (major facilitator	98.6
KOG3762	618	consensus Predicted transporter [General function	98.6
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.57
KOG2533	495	consensus Permease of the major facilitator superf	98.53
KOG0252	538	consensus Inorganic phosphate transporter [Inorgan	98.49
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.49
PRK11462	460	putative transporter; Provisional	98.49
KOG2816	463	consensus Predicted transporter ADD1 (major facili	98.47
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	98.45
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.45
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.3
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	98.27
PF12832	77	MFS_1_like: MFS_1 like family	98.22
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	98.15
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.12
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.04
KOG2325	488	consensus Predicted transporter/transmembrane prot	98.01
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	97.97
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	97.92
COG3202	509	ATP/ADP translocase [Energy production and convers	97.76
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	97.73
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	97.65
KOG2563	480	consensus Permease of the major facilitator superf	97.61
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.44
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	97.17
PRK03612	521	spermidine synthase; Provisional	96.95
PF12832	77	MFS_1_like: MFS_1 like family	96.92
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.84
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.83
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	96.82
KOG3098	461	consensus Uncharacterized conserved protein [Funct	96.55
KOG3626	735	consensus Organic anion transporter [Secondary met	96.33
COG0477	338	ProP Permeases of the major facilitator superfamil	96.12
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	96.09
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	95.93
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	95.92
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	95.85
PRK03612	521	spermidine synthase; Provisional	95.66
KOG3097	390	consensus Predicted membrane protein [Function unk	95.64
PF01733	309	Nucleoside_tran: Nucleoside transporter; InterPro:	93.98
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.11
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	91.73
KOG1237	571	consensus H+/oligopeptide symporter [Amino acid tr	91.34
KOG1479	406	consensus Nucleoside transporter [Nucleotide trans	90.92
KOG0637	498	consensus Sucrose transporter and related proteins	90.69
KOG2601	503	consensus Iron transporter [Inorganic ion transpor	90.4
KOG4332	454	consensus Predicted sugar transporter [Carbohydrat	88.88
KOG3880	409	consensus Predicted small molecule transporter inv	88.45
KOG2881	294	consensus Predicted membrane protein [Function unk	87.73
COG3202	509	ATP/ADP translocase [Energy production and convers	85.7
KOG3880	409	consensus Predicted small molecule transporter inv	83.96
KOG3574	510	consensus Acetyl-CoA transporter [Inorganic ion tr	83.38
PF07672	267	MFS_Mycoplasma: Mycoplasma MFS transporter; InterP	80.86

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.7e-42  Score=321.57  Aligned_cols=436  Identities=34%  Similarity=0.562  Sum_probs=360.8

Q ss_pred             hhHHHHHHHHhhhhccccccccchhhhhh--------hcccccccc----hHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNETLESIS--------LDLGFSGST----MAEGLVVSTCLGGAFVGSMFSGWIADGIGR  117 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--------~~~~~~~~~----~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr  117 (489)
                      ........++.+-.++....+++..+.+.        +.+|.+.++    ...+.+.+++.+|.++|+++.|+++||+||
T Consensus        10 ~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GR   89 (485)
T KOG0569|consen   10 LLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGR   89 (485)
T ss_pred             HHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            34445556666777777777777655443        344533222    236888999999999999999999999999


Q ss_pred             hhHhhhhhHHHHHHHHHHhh---hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH
Q 011308          118 RRAFQLCALPMIIGASMSAI---TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVAL  194 (489)
Q Consensus       118 r~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~  194 (489)
                      |..+.++.++..++.++..+   .+++.+++++|++.|+..|........++.|..|++.||....+.+.+..+|.+++.
T Consensus        90 K~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~  169 (485)
T KOG0569|consen   90 KNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQ  169 (485)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHH
Confidence            99999998888888777765   468999999999999999999999999999999999999999999999999999997


Q ss_pred             Hhhcc--cccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHh-cCChHHHHHHHHHHhCCCCchHHHHHHhhh---h
Q 011308          195 FVGLP--AKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFK-RGRGAEAEAELERLFGGLHVKYSMAELSKS---E  268 (489)
Q Consensus       195 ~~~~~--l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  268 (489)
                      .++..  +.+... |++.+....+++++..+.+.++||||||+.. |++.+++++.++.+++..+.+.+.++..++   +
T Consensus       170 ~~~l~~ilGt~~~-W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~  248 (485)
T KOG0569|consen  170 VLGLPSLLGTEDL-WPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEE  248 (485)
T ss_pred             HHccHHhcCCCcc-hHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHh
Confidence            77643  323344 9999999999999999999999999999998 899999999999999988765555443322   2


Q ss_pred             hccchhhhhHHhhhccccccc-hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHH
Q 011308          269 RGDEADAVKFSELISPRNFGV-VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMIL  344 (489)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l  344 (489)
                      +..+++..+++++++++..+. ..+...+...+.+.+.+.+.+|...++.+.|++...   .....++..++.++++.++
T Consensus       249 ~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~l  328 (485)
T KOG0569|consen  249 ELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFL  328 (485)
T ss_pred             ccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222336678999999877665 455566677778889999999999999999988775   6777788899999999999


Q ss_pred             HhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC-CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308          345 MDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS-SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV  423 (489)
Q Consensus       345 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  423 (489)
                      .||+|||++++.+..++.+..+++.......... .+..+..+.+.+++...++.|.+|+.+-+.+|++|++.|+.++++
T Consensus       329 id~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~  408 (485)
T KOG0569|consen  329 IDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSV  408 (485)
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHH
Confidence            9999999999999998888877776665443222 122334567788888999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhCC
Q 011308          424 CMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLP  487 (489)
Q Consensus       424 ~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (489)
                      ...+..+..++-...+..+.+..|. ..|+.+++.+++..++.++..||||+|+.+|+.++.++
T Consensus       409 ~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~  471 (485)
T KOG0569|consen  409 ATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK  471 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence            9999999999999999999999997 68899999999999999999999999999888877553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=100.00  E-value=8.7e-43  Score=344.77  Aligned_cols=416  Identities=21%  Similarity=0.216  Sum_probs=316.1

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      ++.|..+++++++.+..+++...++..+|.+.++++++..+.  +++.+++.++++++++++|+++||+|||++++++++
T Consensus       163 ~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~--g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~li  240 (742)
T TIGR01299       163 RFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGK--GMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLS  240 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            446777778888888888888889999999999999987776  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc---
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI---  203 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~---  203 (489)
                      +.++++++++++++++.++++|+++|++.++..+....++.|++|+++|++.+++...++.+|.++++.++..+...   
T Consensus       241 l~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~  320 (742)
T TIGR01299       241 VNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGW  320 (742)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998876554432   


Q ss_pred             ----------cchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCch----HH---HHHHhh
Q 011308          204 ----------LGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVK----YS---MAELSK  266 (489)
Q Consensus       204 ----------~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~  266 (489)
                                .+ ||+.+++.+++.++.++..+++||+|+|+..+++.+++.+.++++...+...    ..   .+....
T Consensus       321 ~~~~g~~~~~~g-WR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~  399 (742)
T TIGR01299       321 SFQMGSAYQFHS-WRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKT  399 (742)
T ss_pred             hhcccccccccc-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHH
Confidence                      34 9999999988888877777889999999999999999999998887654211    10   000000


Q ss_pred             --hhh-----c-cch----------------hhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc---
Q 011308          267 --SER-----G-DEA----------------DAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA---  319 (489)
Q Consensus       267 --~~~-----~-~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  319 (489)
                        ...     + ...                ....++++++++..+..++..+++ +.....+..+..|+|.+++..   
T Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl~l~~~w-f~~~~~yygl~~w~P~~~~~~~~~  478 (742)
T TIGR01299       400 IHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITIKLMGVW-FTLSFGYYGLSVWFPDMIKHLQAD  478 (742)
T ss_pred             hhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence              000     0 000                001355667665555555444444 444445666677777654321   


Q ss_pred             ---------------------------------------CC---------------------------------------
Q 011308          320 ---------------------------------------GV---------------------------------------  321 (489)
Q Consensus       320 ---------------------------------------~~---------------------------------------  321 (489)
                                                             |+                                       
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~  558 (742)
T TIGR01299       479 DYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFEN  558 (742)
T ss_pred             HHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccc
Confidence                                                   00                                       


Q ss_pred             -------------------------C-----C-------CchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308          322 -------------------------P-----S-------DSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA  364 (489)
Q Consensus       322 -------------------------~-----~-------~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (489)
                                               +     .       .....+.+++.+++.++.++++||+|||+++..+.++.+++
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~  638 (742)
T TIGR01299       559 TDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCIS  638 (742)
T ss_pred             cchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence                                     0     0       00134556788999999999999999999999888888888


Q ss_pred             HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      .+++.+....        ...++..++++++.+ +..+...++++|++|++.|++++|+.+....+|++++|.+.+.+.+
T Consensus       639 ~ll~~~~~s~--------~~ll~~~~l~g~~~~-~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~  709 (742)
T TIGR01299       639 CFFLSFGNSE--------SAMIALLCLFGGLSI-AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG  709 (742)
T ss_pred             HHHHHHHccH--------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7776654321        112222333333332 3345667789999999999999999999999999999999998877


Q ss_pred             HhccchhhHHHHHHHHHHHHHhhhcccCCCCCC
Q 011308          445 QLGPLILYTIFGSFCFLAVIYVKRNVMETKGKT  477 (489)
Q Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (489)
                      . +...+|++.+++.++++++.+ ++||++++.
T Consensus       710 ~-~~~~pf~i~a~~lll~~ll~~-~LPET~~~~  740 (742)
T TIGR01299       710 I-TKAAPILFASAALACGGLLAL-KLPDTRGQV  740 (742)
T ss_pred             h-hhHHHHHHHHHHHHHHHHHHH-hCCCCcccc
Confidence            5 455677777777777666555 458988764

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=100.00  E-value=1e-41  Score=333.52  Aligned_cols=431  Identities=33%  Similarity=0.553  Sum_probs=318.4

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcc--------cccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDL--------GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR  118 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--------~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr  118 (489)
                      +...+.++...++.+..+++...+++..|.+++++        +.+..+.  +++.+++.++..++++++|+++||+|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~s~~~ig~~~~~~~~G~l~dr~Grr   85 (479)
T PRK10077          8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLL--GFCVASALIGCIIGGALGGYCSNRFGRR   85 (479)
T ss_pred             hHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcccccccccCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence            34456677777888999999999999999998887        5655555  9999999999999999999999999999


Q ss_pred             hHhhhhhHHHHHHHHHHhhh------------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHH
Q 011308          119 RAFQLCALPMIIGASMSAIT------------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAA  186 (489)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~  186 (489)
                      ++++.+.+++.++.++++++            ++++.++++|+++|++.|...+...++++|++|+++|++++++.+.+.
T Consensus        86 ~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~  165 (479)
T PRK10077         86 DSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI  165 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH
Confidence            99999999999998888763            235678899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCch
Q 011308          187 CLGILVALFVGLPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVK  258 (489)
Q Consensus       187 ~~G~~i~~~~~~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (489)
                      .+|.++++.+++.+.        +..+ ||+.|++.+++.++..+..+++||+|+++..+++.+++++..++..+.....
T Consensus       166 ~~G~~~~~~~~~~~~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~  244 (479)
T PRK10077        166 IFGQLVVYFVNYFIARSGDASWLNTDG-WRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNTLAT  244 (479)
T ss_pred             HHHHHHHHHHHHHHhccCcccccccCC-hHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHHHHcCChhHH
Confidence            999999887765443        3456 9999999888887776667779999999888888777766666554332221


Q ss_pred             HHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHH
Q 011308          259 YSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANL  335 (489)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  335 (489)
                      ...++..+..+.+   ....+..+. ..............+..........++.|.+.+..+.+...   .....++..+
T Consensus       245 ~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~  320 (479)
T PRK10077        245 QALQEIKHSLDHG---RKTGGKLLM-FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQTIIVGVINL  320 (479)
T ss_pred             HHHHHHHHHHHHh---hhhhhhhcc-hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHH
Confidence            1111111100000   000011111 00011111111222223334455667778888887776543   4445677888


Q ss_pred             HHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh
Q 011308          336 SGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR  415 (489)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  415 (489)
                      ++.++.++++||++||+.+..+.++.+++.+++......    ............+++.+++....|..+.++.|.+|++
T Consensus       321 i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~  396 (479)
T PRK10077        321 TFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNA  396 (479)
T ss_pred             HHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChh
Confidence            999999999999999999999988888877766543321    1111223334455555555555677788999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhCCC
Q 011308          416 IRAKAMAVCMAVHWVINFFVGLLFLRLL------EQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQ  488 (489)
Q Consensus       416 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  488 (489)
                      .|+++.|+.+...+++.++++.+.+.+.      +..++...|.+.+++++++.++.+++.||+|+++.+|.+++++++
T Consensus       397 ~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  475 (479)
T PRK10077        397 IRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEALWEPE  475 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHhhc
Confidence            9999999999999999999987776544      567777888888888888888777788999999999988876654

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=100.00  E-value=4.5e-42  Score=336.07  Aligned_cols=430  Identities=20%  Similarity=0.280  Sum_probs=305.9

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcc-c--ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDL-G--FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL  123 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~--~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  123 (489)
                      +..+..+.++.++.+.++++...++...|.+.+++ +  ...+..+.+++.+.+.+++.++++++|+++||+|||+++..
T Consensus        12 ~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~   91 (502)
T TIGR00887        12 WQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGM   91 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence            45566777888899999999999999998887653 1  11122234899999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhh------HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 011308          124 CALPMIIGASMSAITKN------LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG  197 (489)
Q Consensus       124 ~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  197 (489)
                      +.+++.++.++++++++      ++.++++|+++|++.|...+....++.|++|+++|++++++.+....+|..+++.++
T Consensus        92 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~  171 (502)
T TIGR00887        92 ELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVA  171 (502)
T ss_pred             HHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888765      789999999999999999999999999999999999999999999999999998887


Q ss_pred             ccccc-----------------------ccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChH-HHHHHHHHHhC
Q 011308          198 LPAKE-----------------------ILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGA-EAEAELERLFG  253 (489)
Q Consensus       198 ~~l~~-----------------------~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~-~~~~~~~~~~~  253 (489)
                      ..+..                       ..+ ||++|.+.+++.++..+..+++||+|+|+..++|.+ ++++.+.+...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~  250 (502)
T TIGR00887       172 LIVLAGFKHSLEAAADEASCTGSCVPAVDYM-WRILIGFGAVPALLALYFRLTIPETPRYTADVAKDVEQAASDMSAVLQ  250 (502)
T ss_pred             HHHHHHhccccccccccccccccccchhccc-HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcchHHHHHHHHHHhc
Confidence            65421                       125 999999999888887777788999999999888764 45655655543


Q ss_pred             CCCchHHHHHHhhhhhccchhhhhHHhhhccc---cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc-----
Q 011308          254 GLHVKYSMAELSKSERGDEADAVKFSELISPR---NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-----  325 (489)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  325 (489)
                      ....+. .++..+.+++++....+++++++++   ..++..+......+.....+.....+.|.++++.|.+...     
T Consensus       251 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~  329 (502)
T TIGR00887       251 VKIEAE-PDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNA  329 (502)
T ss_pred             cccccC-cccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhH
Confidence            221111 1111110011111223567776532   2212222222222211112233444567777776665331     


Q ss_pred             ----------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHH
Q 011308          326 ----------GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLT  395 (489)
Q Consensus       326 ----------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (489)
                                ......++.+++.++.++++||+|||+.+..+..+..++..++.+.....   ...  .......+....
T Consensus       330 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~---~~~--~~~~~~~~~~~~  404 (502)
T TIGR00887       330 YEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL---STH--GFLAIYVLAQFF  404 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc---chh--HHHHHHHHHHHH
Confidence                      12233456667888999999999999998888777766665555432110   001  111222222233


Q ss_pred             HhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccchhhHHHHHHHHHHHHH
Q 011308          396 FSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ----------LGPLILYTIFGSFCFLAVIY  465 (489)
Q Consensus       396 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~  465 (489)
                      ++.+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+.+.+.          .++...|.+++++++++.++
T Consensus       405 ~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~  484 (502)
T TIGR00887       405 ANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILF  484 (502)
T ss_pred             HhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHH
Confidence            34555667777889999999999999999999999999999999999884          33455778888888777665


Q ss_pred             hhhcccCCCCCCHHHHHHh
Q 011308          466 VKRNVMETKGKTLQEIEMA  484 (489)
Q Consensus       466 ~~~~~~~~~~~~~~~~~~~  484 (489)
                      . ++.||+++++++|+++|
T Consensus       485 ~-~~lpEt~~~~leei~~~  502 (502)
T TIGR00887       485 T-LLIPETKGKSLEELSGE  502 (502)
T ss_pred             h-eEeccCCCCCHHhhhCC
Confidence            4 56799999998887654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=100.00  E-value=3.7e-40  Score=323.57  Aligned_cols=432  Identities=37%  Similarity=0.627  Sum_probs=319.3

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhccccc------ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFS------GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA  120 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  120 (489)
                      ++.+....++.++.++..++...+.+.+|.+..+++.+      .++.+.|++.+++.++..++++++|+++||+|||++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~  103 (481)
T TIGR00879        24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS  103 (481)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH
Confidence            34444555566677788888889999999999998887      334445999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhh---hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 011308          121 FQLCALPMIIGASMSAIT---KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG  197 (489)
Q Consensus       121 l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  197 (489)
                      +..+.+++.++.+++.+.   .+++.++++|+++|++.+...+....++.|++|+++|++++++.+.+..+|..+++.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~  183 (481)
T TIGR00879       104 LLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFG  183 (481)
T ss_pred             HHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999998554   34568999999999999999999999999999999999999999999999999999999


Q ss_pred             ---cccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHH-h---h-hhh
Q 011308          198 ---LPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAEL-S---K-SER  269 (489)
Q Consensus       198 ---~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~-~~~  269 (489)
                         ....+..+ ||+.|++.++..++..+..+++||+|++...+++.++..+...+..+.........+. .   . .+.
T Consensus       184 ~~~~~~~~~~~-w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (481)
T TIGR00879       184 SGKVSLNNTLG-WRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSI  262 (481)
T ss_pred             HHhhcCCCCcc-HHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHH
Confidence               77667777 9999999777776666667778999988777776666555544443322221111110 0   0 000


Q ss_pred             ccchhhhhHHhhhccc--cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHH
Q 011308          270 GDEADAVKFSELISPR--NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMIL  344 (489)
Q Consensus       270 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l  344 (489)
                      +.+.....+++.++..  ..+..+....+..+..........++.+.+.++.|.+...   ......++.+++.++.+++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l  342 (481)
T TIGR00879       263 EKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFL  342 (481)
T ss_pred             HHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0000011123333321  1233344444444444445556677788888888877743   4555677888999999999


Q ss_pred             HhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC--cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308          345 MDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS--GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA  422 (489)
Q Consensus       345 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  422 (489)
                      .||++||+.+..+..+..++.+++.+.........  ......+....++..+++.+..+....++.|.+|++.|+++.|
T Consensus       343 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  422 (481)
T TIGR00879       343 VDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGIS  422 (481)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHH
Confidence            99999999988887777776666553322111110  0122333444555566666666777778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHH
Q 011308          423 VCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQ  479 (489)
Q Consensus       423 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (489)
                      +.+...+++++++|.+.+.+.++.++...|++.+++++++.++.+++.+|+++++.+
T Consensus       423 ~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~  479 (481)
T TIGR00879       423 IAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLE  479 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChh
Confidence            999999999999999999999999999999999999888888887778888776554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=6e-39  Score=313.83  Aligned_cols=439  Identities=36%  Similarity=0.599  Sum_probs=353.6

Q ss_pred             chhhHHHHHHHHhhhhccc--cccccchhhhhhhccccccc---c--hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 011308           48 RSLPHVLVAIISSFLFGYH--LGVVNETLESISLDLGFSGS---T--MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA  120 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~---~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  120 (489)
                      ..........+..+..+++  .+..++..+.+.++...+..   +  .+.+|+.+++.++..++++++|+++|++|||+.
T Consensus        42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~  121 (513)
T KOG0254|consen   42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT  121 (513)
T ss_pred             ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            3344445556666666665  55667777777664332211   1  234899999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccc
Q 011308          121 FQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPA  200 (489)
Q Consensus       121 l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  200 (489)
                      ++++.+++.++.+++++++|+++++++|+++|+|.|......+.+++|..|++.||...+..+....+|..++..++...
T Consensus       122 l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~  201 (513)
T KOG0254|consen  122 LLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGT  201 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999997776666


Q ss_pred             ccc-cchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhC--CCCchHHHHHHhhhh---hccchh
Q 011308          201 KEI-LGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFG--GLHVKYSMAELSKSE---RGDEAD  274 (489)
Q Consensus       201 ~~~-~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~  274 (489)
                      .+. .+ ||..+.+..+++++..+..+++||+|+|+.++++.+++++.+.++.+  ..+...+.++.....   ....+.
T Consensus       202 ~~~~~~-Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (513)
T KOG0254|consen  202 SKVYAG-WRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELELLKIKLLVEAEVAEG  280 (513)
T ss_pred             ccCCcc-HHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhhhcccc
Confidence            543 35 99999999999998888878899999999999999999999999988  333333333333111   111111


Q ss_pred             hhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC--chhHHHHHHHHHHHHHHHHHHhhhCCch
Q 011308          275 AVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD--SGNICVGIANLSGSIIAMILMDKLGRRV  352 (489)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~l~d~~~~~~  352 (489)
                      ...+++++++...++..+...+..++.+++.+...+|.+.+++..+....  ......++...++..++.++.||+|||+
T Consensus       281 ~~~~~~l~~~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~  360 (513)
T KOG0254|consen  281 KASWGELFSPKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRK  360 (513)
T ss_pred             cccHHHhcCcchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            12356666655666777788888999999999999999999999888765  3566677888889999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcccC----CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHH
Q 011308          353 LLLGSFLGMAIAMGVQAIAATSFVS----SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVH  428 (489)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~  428 (489)
                      .++.+...+.++.++++........    .....+..+...+++...+..+..++.+.+.+|.+|.+.|+++.++...+.
T Consensus       361 lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n  440 (513)
T KOG0254|consen  361 LLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVN  440 (513)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHH
Confidence            9999999999998888776554322    223456677778888888889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH-HhhhcccCCCCCCHHHHHHhhCC
Q 011308          429 WVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVI-YVKRNVMETKGKTLQEIEMALLP  487 (489)
Q Consensus       429 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  487 (489)
                      .+...+-...+..+.+..+....|..+++++.+... ..+++.||+|+++++|+++.+++
T Consensus       441 ~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~  500 (513)
T KOG0254|consen  441 WLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEE  500 (513)
T ss_pred             HHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHc
Confidence            999888877777766665535567777777777777 78888999999999999886544

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.1e-40  Score=297.11  Aligned_cols=377  Identities=19%  Similarity=0.222  Sum_probs=300.0

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +..+..++.+.++.|..+.........+|++++|+|+|..+.  |++.|.|.++++++.++...+.||+.||++++..+.
T Consensus         9 ~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~a--G~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~   86 (394)
T COG2814           9 KPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAA--GQLITAYALGVALGAPLLALLTGRLERRRLLLGLLA   86 (394)
T ss_pred             ccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHH
Confidence            445667788888999999999999999999999999999888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      ++.++++++++++||+.++++|++.|+..|.+++...++..+..|+++|++++++...+..++.++|.+++.++.+..| 
T Consensus        87 lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G-  165 (394)
T COG2814          87 LFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG-  165 (394)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308          207 WRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR  285 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      ||+.|++.+..+++..+..+ .+|  |+                                +.+++.+.+..+..+.+|++
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP--~~--------------------------------~~~~~~~~~~~~~~~~l~~p  211 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP--PS--------------------------------EISGSLPGPLRTLLRLLRRP  211 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC--Cc--------------------------------cCCCCCCcchhHHHHHhcCc
Confidence            99999999999888776644 477  21                                00111112223455678888


Q ss_pred             cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      ..+..++...+.....+.   .+.|.-|...+..|++...   ....++++.++|+.++|++.|| +.|+.+.....+..
T Consensus       212 ~v~~~l~~t~l~~~g~F~---~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a  287 (394)
T COG2814         212 GVLLGLLATFLFMTGHFA---LYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLA  287 (394)
T ss_pred             hHHHHHHHHHHHHcchhh---hHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHH
Confidence            888777776666654333   3333344444456666554   6778899999999999999999 88888887777777


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      +..+.+.+....       .+..+....+.++....... .......+..| +.++.+.+++....|+|..+|..++|.+
T Consensus       288 ~~~l~l~~~~~~-------~~~~~~~~~~wg~a~~~~~~-~~~~~~a~~~p-~~~~~a~sl~~aa~nlgia~GA~lGG~v  358 (394)
T COG2814         288 LALLALTFTGAS-------PALALALLFLWGFAFSPALQ-GLQTRLARLAP-DAADLAGSLNVAAFNLGIALGAALGGLV  358 (394)
T ss_pred             HHHHHHHHhcch-------HHHHHHHHHHHHHHhhhhhh-HHHHHhcccCC-CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776666554332       23333333333333322211 22223444334 7799999999999999999999999999


Q ss_pred             HHHhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          443 LEQLGPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      .|+.|+....++.+.+.+++.++.....+..
T Consensus       359 ~~~~g~~~~~~~~a~l~~~a~~~~~~~~~~~  389 (394)
T COG2814         359 LDALGYAATGWVGAALLLLALLLALLSARKD  389 (394)
T ss_pred             HHhhchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999888888877766544433

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=100.00  E-value=7.5e-42  Score=302.44  Aligned_cols=405  Identities=16%  Similarity=0.112  Sum_probs=309.3

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +.++.++..+++++...++.+-.++.+.|.+.+|.++|.+|.  |++.+.+.+.|.++.++.|.++||.++|+.+.++++
T Consensus        25 ~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~l--G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLi  102 (448)
T COG2271          25 RWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQL--GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLI  102 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHH
Confidence            456778889999999999999999999999999999988888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh--ccccccc
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG--LPAKEIL  204 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~--~~l~~~~  204 (489)
                      ++++.+++++++++.+.+.++.+++|+.+|..+|.+...+..|++++|||+..++++++.++|..+.|++.  +.+..+.
T Consensus       103 lsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~  182 (448)
T COG2271         103 LSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHG  182 (448)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998  8888777


Q ss_pred             chHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhc-cchhhhhHHhhh
Q 011308          205 GWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERG-DEADAVKFSELI  282 (489)
Q Consensus       205 ~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  282 (489)
                      + ||..|++.++++++..+..++ .+|+|+..- -+..++.++       +.   .+.+ .++++.+ -...+.-.+.++
T Consensus       183 ~-w~~~f~~pgiiaiival~~~~~~rd~Pqs~G-LP~ie~~~~-------d~---~e~~-~~~~~~~~ls~~~i~~~YVL  249 (448)
T COG2271         183 G-WRAAFYFPGIIAIIVALILLFLLRDRPQSEG-LPPIEEYRG-------DP---LEIY-EEEKENEGLTAWQIFVKYVL  249 (448)
T ss_pred             c-hhHHHHHHHHHHHHHHHHHHHHhCCCccccC-CCCHHHhhc-------Cc---hhhh-hhhccCCCccHHHHHHHHHH
Confidence            7 999999999998887766544 788875210 001111110       00   0000 0011111 122334566788


Q ss_pred             ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhh--CCchhHHHH-HH
Q 011308          283 SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKL--GRRVLLLGS-FL  359 (489)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~-~~  359 (489)
                      +||..|.+.++..+....-+....+.+.|+....+....++.....++-+++++|.++.|+++||+  |||....+. .+
T Consensus       250 ~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~  329 (448)
T COG2271         250 KNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFML  329 (448)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            999999999999888887777777777776664433334444466777789999999999999996  455554333 33


Q ss_pred             HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH-HHHHHHHH
Q 011308          360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV-INFFVGLL  438 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~  438 (489)
                      +..++++.+...+      +.+..+...++...++ +-.+..-+.-....|..|++..|++.|+...+.++ |...+...
T Consensus       330 ~i~~~~~~~w~~~------~~~~~l~~~~l~~iGf-~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~  402 (448)
T COG2271         330 LITASLVLYWLAP------NGSYLLDAILLFIIGF-LIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLP  402 (448)
T ss_pred             HHHHHHHHHHcCC------CccHHHHHHHHHHHHH-HHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCc
Confidence            3333333332222      2222333333322222 22233334455678999999999999999999999 88999999


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      .|++.|.+||...|.++.+.++++.+++....+..
T Consensus       403 ~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~~~  437 (448)
T COG2271         403 LGYIADTWGWDGGFIVLSIAALLAILLLLPVWNAE  437 (448)
T ss_pred             ceeeEecCCCcchHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999888888877666544433

>TIGR00898 2A0119 cation transport protein

Probab=100.00  E-value=1e-39  Score=321.24  Aligned_cols=389  Identities=23%  Similarity=0.319  Sum_probs=292.7

Q ss_pred             chhhhhhhccccc---ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308           72 ETLESISLDLGFS---GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGR  148 (489)
Q Consensus        72 ~~~~~i~~~~~~~---~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (489)
                      +..|.+.+|++++   ..+.  +++.+++.+++.+++++.|+++||+|||+++.++.++.+++.++.++++|++.++++|
T Consensus       110 ~~~~~i~~e~~l~c~~~~~~--~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r  187 (505)
T TIGR00898       110 TFSSTIVTEWDLVCEDAWKV--DLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFR  187 (505)
T ss_pred             cccccEEEEecceechHHHH--HHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            5678899999998   5555  9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcc
Q 011308          149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFC  228 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      ++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.+++.+.+    ||+.|++.+++.++..+..+++
T Consensus       188 ~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~----wr~~~~~~~i~~~~~~~~~~~~  263 (505)
T TIGR00898       188 LLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD----WRWLQLAVSLPTFLFFLLSWFV  263 (505)
T ss_pred             HHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999877654    9999999999888877777789


Q ss_pred             cCChhHHHhcCChHHHHHHHHHHhCCCCch--HHHHHHh-hhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcch
Q 011308          229 AESPHWLFKRGRGAEAEAELERLFGGLHVK--YSMAELS-KSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGI  305 (489)
Q Consensus       229 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (489)
                      ||+|+|+..+++.+++.+.+++..+.+...  .+..+.. +++..+++++.+++++++++.++...+......+....  
T Consensus       264 ~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--  341 (505)
T TIGR00898       264 PESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF--  341 (505)
T ss_pred             CCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH--
Confidence            999999999999888887776654332211  1111111 11111111234678888888877665555444332221  


Q ss_pred             hHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHH
Q 011308          306 NAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLS  385 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (489)
                        ..+..+......+.+........++..+++.++.+++.||+|||+.+..+.++.+++++++.+....      ..+..
T Consensus       342 --~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~------~~~~~  413 (505)
T TIGR00898       342 --SYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVD------LYFLR  413 (505)
T ss_pred             --HHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCC------chHHH
Confidence              1222223333344444445566778888999999999999999999988888777776665544321      11122


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q 011308          386 LGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIY  465 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      .....+..++.+ ...+..+.+..|.+|++.|++++|+.+....+|++++|.+.+  .+..++..++.+++++++++.++
T Consensus       414 ~~~~~~~~~~~~-~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~  490 (505)
T TIGR00898       414 TALAVLGKFGIT-SAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGIL  490 (505)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHH
Confidence            222222222222 223456678899999999999999999999999999999998  44456667788888877777665


Q ss_pred             hhhcccCCCCCCHHH
Q 011308          466 VKRNVMETKGKTLQE  480 (489)
Q Consensus       466 ~~~~~~~~~~~~~~~  480 (489)
                      .+ +.||+++++++|
T Consensus       491 ~~-~lpet~~~~l~~  504 (505)
T TIGR00898       491 TL-FLPETKGVPLPE  504 (505)
T ss_pred             HH-cCcCCCCCCCCC
Confidence            54 578988876653

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=100.00  E-value=6.4e-38  Score=305.61  Aligned_cols=396  Identities=17%  Similarity=0.206  Sum_probs=265.7

Q ss_pred             hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchH--HHH--HHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMA--EGL--VVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA  125 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~g~--~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  125 (489)
                      ++.+....++.+++++|...++...|.+.++++.+.++..  .+.  +.++..+++.+++++.|+++||+|||+++..++
T Consensus        15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~   94 (490)
T PRK10642         15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITI   94 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3456677889999999999999999999999976544321  111  257788999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHH--------HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh
Q 011308          126 LPMIIGASMSAITKNLWG--------MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG  197 (489)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~  197 (489)
                      ++++++++++++++|+++        ++++|+++|++.|...+....++.|++|+++|+++.++...+..+|..+++.+.
T Consensus        95 ~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~  174 (490)
T PRK10642         95 VIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVV  174 (490)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999875        788999999999999999999999999999999999999988888888887665


Q ss_pred             cccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhh
Q 011308          198 LPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSER  269 (489)
Q Consensus       198 ~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (489)
                      ..+.        ...| ||+.|++.+++.++..++...+||+|+|...+++.++..+                     +.
T Consensus       175 ~~~~~~~~~~~~~~~g-WR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~---------------------~~  232 (490)
T PRK10642        175 VLISTIVGEANFLDWG-WRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR---------------------EG  232 (490)
T ss_pred             HHHHHhcCHHHhcCcc-HHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc---------------------cc
Confidence            4332        2456 9999999877666555555668999886543222111000                     00


Q ss_pred             ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHH
Q 011308          270 GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILM  345 (489)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~  345 (489)
                      ..+....++++++++ ..+.......... .....+.....+.|.++.+ .+.+...   ......++.+++.++.|+++
T Consensus       233 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~  310 (490)
T PRK10642        233 LQDGPKVSFKEIATK-HWRSLLTCIGLVI-ATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLS  310 (490)
T ss_pred             ccccccCCHHHHHHH-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000112234455543 1222222221111 1122334455567776643 4665443   33445567778889999999


Q ss_pred             hhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHH
Q 011308          346 DKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCM  425 (489)
Q Consensus       346 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~  425 (489)
                      ||+|||+.+..+.+...++.........     ..+....+....+.+.+.+.... ....+..|.+|++.|+++.|+.+
T Consensus       311 dr~grr~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~g-~~~~~~~~~~p~~~Rg~~~g~~~  384 (490)
T PRK10642        311 DRFGRRPFVILGSVALFVLAIPAFILIN-----SNVIGLIFAGLLMLAVILNCFTG-VMASTLPAMFPTHIRYSALAAAF  384 (490)
T ss_pred             HHhccHHHHHHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCccchHHHHHHH
Confidence            9999999887766543332222111111     11112222333333333322222 33456778999999999999877


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308          426 AVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKRNVMETKGK  476 (489)
Q Consensus       426 ~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (489)
                      ....+++.++|.+.+++.+..+ +..++....+.++++.+..+ +.||++++
T Consensus       385 ~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~-~~pes~~~  435 (490)
T PRK10642        385 NISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGV-TMKETANR  435 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH-HhccccCC
Confidence            7777888999999999988755 45555555555555555444 45776543

>PRK03545 putative arabinose transporter; Provisional

Probab=100.00  E-value=8.3e-38  Score=297.08  Aligned_cols=371  Identities=15%  Similarity=0.134  Sum_probs=272.9

Q ss_pred             chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308           48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP  127 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  127 (489)
                      ++|..+..+.++.+..........+.+|.+.+|+|.+.++.  |++.+.+.+++.+++++.|+++||+|||+++..+.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~   83 (390)
T PRK03545          6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQV--GLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVL   83 (390)
T ss_pred             cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            34555555555555554444456667899999999988888  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchH
Q 011308          128 MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWW  207 (489)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~W  207 (489)
                      .+++++++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|++++.+.+..+ |
T Consensus        84 ~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~g-w  162 (390)
T PRK03545         84 FIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLG-W  162 (390)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhc-H
Confidence            999999999999999999999999999998889999999999999999999999999999999999999999988888 9


Q ss_pred             HHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308          208 RICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN  286 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      |+.|++.++..++..+..+ ++||+++     +++                               +...+.++.++++.
T Consensus       163 ~~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~~-------------------------------~~~~~~~~~~~~~~  206 (390)
T PRK03545        163 RTTFLAIGGGALITLLLLIKLLPLLPS-----EHS-------------------------------GSLKSLPLLFRRPA  206 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCc-------------------------------chHHHHHHHHhCcH
Confidence            9999999887776654433 3565432     000                               00112445677776


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      ++......++......    ....+.+.++.+ .+.+...   .....+++.++++++.+++.||+++|.... +..+..
T Consensus       207 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~  281 (390)
T PRK03545        207 LVSLYLLTVVVVTAHF----TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLL  281 (390)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHH
Confidence            6544443333332221    122333333343 5666554   445566788999999999999999876543 333333


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      ++...+....       .+.+.......+.+.+.. ...+.....+.+..| +.+++++|+++...++|..+||.+.|.+
T Consensus       282 ~~~~~l~~~~-------~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~  352 (390)
T PRK03545        282 VCLLLLLPAA-------NSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQV  352 (390)
T ss_pred             HHHHHHHHHh-------chHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332222111       112223333444444432 233444556777767 5789999999999999999999999999


Q ss_pred             HHHhccchhhHHHHHHHHHHHHHhhhccc
Q 011308          443 LEQLGPLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      .|..|++..|.+.+++.+++.++.+...+
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        353 SLHLGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            99999999999999888888877765543

>PRK12307 putative sialic acid transporter; Provisional

Probab=100.00  E-value=4.8e-37  Score=295.97  Aligned_cols=394  Identities=16%  Similarity=0.211  Sum_probs=280.4

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +.+++.+..+.++.+.++++.....+..|.+.+++|+++.+.  +++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~   91 (426)
T PRK12307         14 RPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEG--AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIV   91 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            344566778888888889999999999999999999998877  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      +.+++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.++++.+.+.+.+..+ 
T Consensus        92 ~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~-  170 (426)
T PRK12307         92 AYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYG-  170 (426)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988888888 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308          207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN  286 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      ||+.|++..+..++........||++++..++.+.            ..         ++.+...+.....++++++++.
T Consensus       171 w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~---------~~~~~~~~~~~~~~~~~~~~~~  229 (426)
T PRK12307        171 WRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KG---------KHSQSAWSVFSLSMKGLFNRAQ  229 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cc---------cccccchhhhhHHHHHHHhhch
Confidence            99999986544433332222345554332111000            00         0000001111234667777776


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI  363 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (489)
                      ++........... .+.....+..++|.++.+.+.+...   ......++.+++.++.+++.||++||+....+.++..+
T Consensus       230 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~  308 (426)
T PRK12307        230 FPLTLCVFIVLFS-IFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFL  308 (426)
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            6644433222221 1222223445667777776766544   44556678889999999999999999988877766655


Q ss_pred             HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHh-cCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFS-LGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      ..+.+.....      .. . ......+++.++. .+..+....++.|.+|++.||+++|+.+...++++.++|.+.|.+
T Consensus       309 ~~~~~~~~~~------~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l  380 (426)
T PRK12307        309 FIFPLFRIPQ------DN-Y-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWL  380 (426)
T ss_pred             HHHHHHHHcc------cc-H-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHH
Confidence            5443332211      11 1 1122222222221 222344456778999999999999999999999999999999999


Q ss_pred             HHHhccchh-hHHHHHHHHHHHHHhhhcccCC
Q 011308          443 LEQLGPLIL-YTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       443 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      .+..|+... +.+.+..+.++.....+..|++
T Consensus       381 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (426)
T PRK12307        381 GITMGLGAALTFIVAFWTATILLIIGLSIPDR  412 (426)
T ss_pred             HHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence            998886543 3333434444443333333443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=100.00  E-value=6.7e-39  Score=311.01  Aligned_cols=396  Identities=14%  Similarity=0.086  Sum_probs=275.3

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      .+..+..+++++++.+.++..+++..|.+.+|+|++.++.  |++.+.+.+++.+++++.|+++||+|||+++..+++++
T Consensus        27 ~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~  104 (467)
T PRK09556         27 FMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTYGLSTTEL--GMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILS  104 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHH
Confidence            4566778888888889999999999999999999988877  99999999999999999999999999999999998888


Q ss_pred             HHHHHHHhh-----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 011308          129 IIGASMSAI-----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI  203 (489)
Q Consensus       129 ~i~~~~~~~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~  203 (489)
                      +++.++.++     ++|++.++++|+++|++.+...+...+++.||+|+++|+++++++..+.++|.++++.+..++.+.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~  184 (467)
T PRK09556        105 AICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANY  184 (467)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHh
Confidence            887776665     689999999999999999999999999999999999999999999999999999999988766554


Q ss_pred             c--chHHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhh-HH
Q 011308          204 L--GWWRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVK-FS  279 (489)
Q Consensus       204 ~--~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  279 (489)
                      .  ++||..|.+.+++.++..+..+ +.+++|+..   +..++ ++.   ..+.  ...  ++ ...++++...... .+
T Consensus       185 ~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~~~-~~~---~~~~--~~~--~~-~~~~~~~~~~~~~~~~  252 (467)
T PRK09556        185 FFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWGKA-EEI---FGEP--ISE--ED-KETESTDMTKWQIFVE  252 (467)
T ss_pred             hccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCCCh-hhc---ccCc--cch--hh-hccccccCcHHHHHHH
Confidence            2  2399999888877776655443 456666421   10000 000   0000  000  00 0000000001111 22


Q ss_pred             hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q 011308          280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLL  355 (489)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  355 (489)
                      +.++++.+|...+..++...    .......+.|.++++ .|.+...   ......++.+++.++.|+++||+++|+...
T Consensus       253 ~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~  328 (467)
T PRK09556        253 YVLKNPVIWLLCFANIFLYI----VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALV  328 (467)
T ss_pred             HHHcChHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            36777777765554444333    233355666766643 5666544   444566788999999999999999888765


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH-HHHH
Q 011308          356 GSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV-INFF  434 (489)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~  434 (489)
                      .......++.....+..      ..+.........+++... .+..........|.+|++.+|++.|+.+...++ |+++
T Consensus       329 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~  401 (467)
T PRK09556        329 ACIALALIIFTLGVYQH------ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSF  401 (467)
T ss_pred             HHHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHH
Confidence            54433333222222111      112222222222222211 111112224566999999999999999999997 7799


Q ss_pred             HHHHHHHHHH------------HhccchhhHHHHHHHHHHHHHhhhc
Q 011308          435 VGLLFLRLLE------------QLGPLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       435 ~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      +|.+.|.+.|            ..||...|.+.+++++++.++.+..
T Consensus       402 ~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~  448 (467)
T PRK09556        402 AKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV  448 (467)
T ss_pred             HhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999            5679999988888887776655543

>PRK11663 regulatory protein UhpC; Provisional

Probab=100.00  E-value=5.9e-38  Score=301.48  Aligned_cols=401  Identities=15%  Similarity=0.117  Sum_probs=277.9

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ++......++..+...++...++..+|.+.+++|++.++.  |++.+.+.+++.+++++.|+++||+|||+++.++.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~   98 (434)
T PRK11663         21 RRHILITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDI--GLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIAT   98 (434)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHH
Confidence            3455566677777778888888899999999999988777  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR  208 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr  208 (489)
                      +++.+++++++|++.+++.|++.|++.|...+....++.|++|+++|++++++.+.+.++|..+++.+++.+.+..+ ||
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-w~  177 (434)
T PRK11663         99 GIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYG-WR  177 (434)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-HH
Confidence            99999999999999999999999999999899999999999999999999999999999999999999999998888 99


Q ss_pred             HHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhH-Hhhhcccc
Q 011308          209 ICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF-SELISPRN  286 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  286 (489)
                      +.|++.++..++..+. .++++|+|++...+...+...+. .            +...+.+..+.+.+..+ ...++++.
T Consensus       178 ~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~------------~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (434)
T PRK11663        178 YGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDA-L------------ELAQQQEGAGLSRKEILTKYVLLNPY  244 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccc-c------------ccchhccccCCChhhhHHHHHhcChH
Confidence            9999988776655443 44578876532111000000000 0            00000000000001111 12455665


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC--CchhH-HHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLG--RRVLL-LGSFL  359 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~-~~~~~  359 (489)
                      ++......++...    ....+..++|.++. +.|.+...   ......++..+++++.|+++||+.  +|+.. ....+
T Consensus       245 ~~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~  320 (434)
T PRK11663        245 IWLLSFSYVLVYV----VRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAA  320 (434)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHH
Confidence            5554443333332    23344456666664 45666544   455667888999999999999983  33332 22222


Q ss_pred             HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF  439 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  439 (489)
                      ...+....+.....      .+...........+. ...+..........|.+|++.++++.|+.+...++|.+++|.+.
T Consensus       321 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~  393 (434)
T PRK11663        321 GILLSVGSLWLMPF------ASYVMQAACFFTIGF-FVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPL  393 (434)
T ss_pred             HHHHHHHHHHHccc------ccHHHHHHHHHHHHH-HHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccH
Confidence            22222211111111      111111111111111 11111122234568999999999999999999999999999999


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308          440 LRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK  476 (489)
Q Consensus       440 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (489)
                      |.+.|..|+...|.+.+++++++.+..+...++++++
T Consensus       394 g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  430 (434)
T PRK11663        394 AKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQAPR  430 (434)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence            9999999999999999998888877666555555443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=100.00  E-value=1.1e-37  Score=297.00  Aligned_cols=392  Identities=15%  Similarity=0.085  Sum_probs=271.8

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +.+|+.+..+++..+++++++..++...|.+.+|+|++.++.  |++.+++.+++++++++.|+++||+|||+++..+++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~   81 (412)
T TIGR02332         4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMF--GLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMV   81 (412)
T ss_pred             eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHH
Confidence            346778888888999999999999999999999999998887  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc----
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE----  202 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~----  202 (489)
                      +++++++++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++++.+..+|.++++.+++++.+    
T Consensus        82 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~  161 (412)
T TIGR02332        82 LWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGL  161 (412)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999988763    


Q ss_pred             --ccchHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcC-ChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhH
Q 011308          203 --ILGWWRICFWVATIPAAFLALF-MEFCAESPHWLFKRG-RGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF  278 (489)
Q Consensus       203 --~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  278 (489)
                        ..+ ||+.|++.+++.++..++ .+++||+|+..  +. ..++.+...+..........+.+  ...++........+
T Consensus       162 ~~~~g-wr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  236 (412)
T TIGR02332       162 MALKG-WQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDKKALKEMIDNDQLTLEQPE--GAFAHAAMPQRSML  236 (412)
T ss_pred             CCccc-hhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHHHHHHHHHHhccccccccc--cccccccccHHHHH
Confidence              346 999999988887765544 45578887421  00 01111111111110000000000  00000011112234


Q ss_pred             HhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc--CCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh
Q 011308          279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--GVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL  353 (489)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~  353 (489)
                      ++++ ++.++...+..    ++.......+..++|.++++.  +.+...   ......++.+++.++.|+++||+++|+.
T Consensus       237 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~  311 (412)
T TIGR02332       237 REIF-TPAIMLYTLAY----FCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKH  311 (412)
T ss_pred             HHhc-ChHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHH
Confidence            4444 34443332222    222234555666788888764  333222   5566678889999999999999997764


Q ss_pred             -HHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH
Q 011308          354 -LLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVIN  432 (489)
Q Consensus       354 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  432 (489)
                       .....+...++..+ ...  .    ... ...+....+...+.. ...+.......|.+|++.|++++|+.+...++|+
T Consensus       312 ~~~~~~~~~~~~~~~-~~~--~----~~~-~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~  382 (412)
T TIGR02332       312 HTALPYLFAAAGWLL-ASA--T----DHN-LIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQARAIAIAVINATGNIGS  382 (412)
T ss_pred             HHHHHHHHHHHHHHH-HHh--c----CCH-HHHHHHHHHHHHHhh-hhhhHHHhhcccccchHHHHHHHHHHHHhhhhhh
Confidence             33333333333211 111  1    111 111111222222221 1123334455678899999999999999999999


Q ss_pred             HHHHHHHHHHHHHhc-cchhhHHHHHHH
Q 011308          433 FFVGLLFLRLLEQLG-PLILYTIFGSFC  459 (489)
Q Consensus       433 ~~~~~~~g~l~~~~g-~~~~~~~~~~~~  459 (489)
                      +++|.+.|.+.|..| |...+.+.+++.
T Consensus       383 ~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       383 ALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             hhhhhhcccccccCCCCchhHHHHHHHH
Confidence            999999999999876 777777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=100.00  E-value=1.7e-36  Score=287.40  Aligned_cols=375  Identities=13%  Similarity=0.055  Sum_probs=272.2

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      .|.....++++.+..... ...++.+|.+++|+|+|.++.  |++.+.+.+++.+++++.|+++||+|||+++..+..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~   84 (393)
T PRK09705          8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQASGMSFSVA--ALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLI   84 (393)
T ss_pred             HHHHHHHHHHHHHcchhh-hccchhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHH
Confidence            455555555554444333 667899999999999998887  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc-chH
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL-GWW  207 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~-~~W  207 (489)
                      +++.+++++++|++.++++|+++|++.+...+....++.+++| ++|+++++++..+..+|..+++.+++.+.++. + |
T Consensus        85 ~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~-w  162 (393)
T PRK09705         85 AVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSET-W  162 (393)
T ss_pred             HHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-H
Confidence            9999999999999999999999999999999999999999997 78999999999999999999999999888775 5 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhcc-cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308          208 RICFWVATIPAAFLALFMEFC-AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN  286 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      |+.+.+.++..++..+..+.. ++.|+     ++                           ++++    ...++.++++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------------------------~~~~----~~~~~~l~~~~  206 (393)
T PRK09705        163 YQTLAWWALPAVVALFAWWWQSAREVA-----SS---------------------------HKTT----TTPVRVVFTPR  206 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCCc-----cc---------------------------cCCC----cCCcccccCHh
Confidence            998877666554443333222 11111     00                           0000    01123344454


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI  363 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (489)
                      .+.......+...    .+.....+.|.++.+.+.+...   .....+++.++++++.+++.||+++|+....+..+..+
T Consensus       207 ~~~l~~~~~~~~~----~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~  282 (393)
T PRK09705        207 AWTLGVYFGLING----GYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLV  282 (393)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHH
Confidence            4443333322222    3344555666666666766554   55667788999999999999999999988887776666


Q ss_pred             HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF-PNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      +..++.....      .. ...  ...+.+.+.+.. .+.......+.. |++.+++..|+.+...++++.++|.+.|++
T Consensus       283 ~~~~~~~~~~------~~-~~~--~~~l~g~g~g~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l  352 (393)
T PRK09705        283 GFCGFIWLPL------QL-PVL--WAMVCGLGLGGA-FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL  352 (393)
T ss_pred             HHHHHHHccc------hH-HHH--HHHHHHHhccch-HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554432211      11 111  122233333322 233333444554 567899999999999999999999999999


Q ss_pred             HHHhc-cchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308          443 LEQLG-PLILYTIFGSFCFLAVIYVKRNVMETKGKTL  478 (489)
Q Consensus       443 ~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (489)
                      .|..| +...|.+.++++++..++.....+|++++.+
T Consensus       353 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK09705        353 RSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW  389 (393)
T ss_pred             HHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence            99987 6677777777777777777777888877654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=100.00  E-value=1.4e-36  Score=290.85  Aligned_cols=377  Identities=20%  Similarity=0.242  Sum_probs=277.8

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA  125 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  125 (489)
                      .+++|..+.+.++..++++++....++..|.+.+|+|.++++.  |++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~   87 (406)
T PRK11551         10 SSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEFGLDVAQM--GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSV   87 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence            3477888888888999999999999999999999999988777  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ++..++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+..+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  167 (406)
T PRK11551         88 ALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAA  167 (406)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988888888


Q ss_pred             hHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308          206 WWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP  284 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                       ||+.|++.++..++..+. ..++||+|++..++++.++.+                              ...+..+++
T Consensus       168 -~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~  216 (406)
T PRK11551        168 -WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA------------------------------PVLRALFGE  216 (406)
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh------------------------------hhHHHHhhh
Confidence             999999987765555443 445788775432211100000                              000111111


Q ss_pred             cc---ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 011308          285 RN---FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF  358 (489)
Q Consensus       285 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  358 (489)
                      +.   .+......+..    .........+.|.++++.+.+...   ......++.+++.++.|++.||+++|+.+..+.
T Consensus       217 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~  292 (406)
T PRK11551        217 GRATATLLLWISYFFT----LIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIY  292 (406)
T ss_pred             hhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            11   11111111111    112334455667777777766544   555567788999999999999999999887766


Q ss_pred             HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308          359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  438 (489)
                      ....++.+++....        +.+.......+.+.+.. +..+...++..|.+|+++|+++.|+.+...++|..++|.+
T Consensus       293 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~  363 (406)
T PRK11551        293 AGILASLAALAAAP--------SFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLL  363 (406)
T ss_pred             HHHHHHHHHHHhcC--------cHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhh
Confidence            55555544433221        11222222333333222 2345566688899999999999999999999999999999


Q ss_pred             HHHHHHHhc-cchhhHHHHHHHHHHHHHhhh
Q 011308          439 FLRLLEQLG-PLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       439 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .|.+.++.+ +...+.....+.+++.++.+.
T Consensus       364 ~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (406)
T PRK11551        364 AGQLLALGRSTVGVIGASIPVILVAALAALL  394 (406)
T ss_pred             HhhhhccCCchHHHHHHHHHHHHHHHHHHHH
Confidence            999998755 444455555555555444443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=100.00  E-value=7.7e-37  Score=284.88  Aligned_cols=353  Identities=15%  Similarity=0.079  Sum_probs=248.3

Q ss_pred             cccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHH
Q 011308           65 YHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM  144 (489)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l  144 (489)
                      .....+++.+|.+++|+|++.++.  |++.+.+.+++.+++++.|+++||+|||+++..+......+.+.....+|++.+
T Consensus         5 ~~~~~~~~~lp~i~~~~~~s~~~~--g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l   82 (368)
T TIGR00903         5 AIWVTFSPVLSLVAEDIDVSKEEL--GLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWL   82 (368)
T ss_pred             HHHHHHHhhHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence            344567889999999999988877  999999999999999999999999999998776655554544333334799999


Q ss_pred             HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      +++|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++++.+.+..+ ||+.|++.+++.++..+.
T Consensus        83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~g-Wr~~f~~~~~l~~~~~~~  160 (368)
T TIGR00903        83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGG-LQLLIIPIAAVAAAGIIL  160 (368)
T ss_pred             HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHH
Confidence            9999999999886 45666667999999999999999999999999999999999998888 999999988877666554


Q ss_pred             -hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308          225 -MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS  303 (489)
Q Consensus       225 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
                       .+++||+|++.   ++..+                      .     ++...+++++++++.+|...+..++...    
T Consensus       161 ~~~~lp~~p~~~---~~~~~----------------------~-----~~~~~~~~~ll~~~~~~~~~~~~~~~~~----  206 (368)
T TIGR00903       161 VLAALPALPFQA---AEGFG----------------------F-----KDAVKEFGALAGRKDLWIIGAILGFGVA----  206 (368)
T ss_pred             HHHHcCCCCCCC---CCCcc----------------------h-----HHHHHHHHHHHcChhHHHHHHHHHHHHH----
Confidence             44589887531   10000                      0     0001236678888888766665555544    


Q ss_pred             chhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc---hhHH-HHHHHHHHHHHHHHHHhhcccCCC
Q 011308          304 GINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR---VLLL-GSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      ....+..|+|.++++.+.+.. ......+..+.+.+..++++||..||   +... ....+.++....+....       
T Consensus       207 ~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~-------  278 (368)
T TIGR00903       207 LFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL-------  278 (368)
T ss_pred             HHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc-------
Confidence            344555677777776666543 33334445555666678888987654   2222 12222222222222111       


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFC  459 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~  459 (489)
                      . ....+....+.+ .+.....+..+++.+|.+|++.|+++.|+.+..+++++..+|.+.+.+..  +....|.++++..
T Consensus       279 ~-~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~  354 (368)
T TIGR00903       279 N-RLALFAFIGIAG-LLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILI  354 (368)
T ss_pred             c-cHHHHHHHHHHH-HhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHH
Confidence            1 111222222222 22222334566788999999999999999999999999999999988773  6667788888887


Q ss_pred             HHHHHHhh
Q 011308          460 FLAVIYVK  467 (489)
Q Consensus       460 ~~~~~~~~  467 (489)
                      +++.+...
T Consensus       355 ~i~~~~~~  362 (368)
T TIGR00903       355 TIAFAIAL  362 (368)
T ss_pred             HHHHHHHH
Confidence            77776654

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=100.00  E-value=3e-43  Score=341.58  Aligned_cols=428  Identities=34%  Similarity=0.584  Sum_probs=331.9

Q ss_pred             HHHhhhhccccccccchhhhhh--hccccccc-------chHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308           57 IISSFLFGYHLGVVNETLESIS--LDLGFSGS-------TMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP  127 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~-------~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  127 (489)
                      .++.+..+++....+...+...  .++..+..       +.+.+++.++..+|..+|+++.|+++||+|||+.+.++.++
T Consensus         6 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~   85 (451)
T PF00083_consen    6 SLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALL   85 (451)
T ss_pred             HHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence            3455777777777666655444  22222221       22358999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh---hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          128 MIIGASMSAITK---NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       128 ~~i~~~~~~~~~---~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      ..+++++.++++   |++.+.++|+++|++.|...+....++.|..|+++|++..++.+.+..+|.+++..++..+....
T Consensus        86 ~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~  165 (451)
T PF00083_consen   86 MIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYS  165 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999   99999999999999999999999999999999999999999999999999999888876653322


Q ss_pred             c--hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308          205 G--WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI  282 (489)
Q Consensus       205 ~--~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (489)
                      +  .||+.+++.+++.++..+...++||||+|+..++|.+++++.+++.++....+.+.++..++.++.++.+.++++++
T Consensus       166 ~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  245 (451)
T PF00083_consen  166 DNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLF  245 (451)
T ss_pred             ccccccccccccccccccccccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence            2  29999999999998887778889999999999999999999888866554444333333332222222225677788


Q ss_pred             cccc-ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308          283 SPRN-FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD-SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG  360 (489)
Q Consensus       283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (489)
                      +++. .++......+..+....+.....+|.+.+++..+.+.. ......++...++.+++.++.||+|||+.++.+...
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~  325 (451)
T PF00083_consen  246 RNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLL  325 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7755 44555555555666566667777888888888777776 455566677778888888999999999999888887


Q ss_pred             HHHHHHHHHHHhhcccCCC--cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308          361 MAIAMGVQAIAATSFVSSS--GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  438 (489)
                      ..++.+.+.. ........  ......+....++...++.+..+..+.+..|.+|++.|+++.|+....+++++++++.+
T Consensus       326 ~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~  404 (451)
T PF00083_consen  326 MAICSLILGI-IFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFL  404 (451)
T ss_pred             cccccccccc-ccccccccccccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7777666541 11111111  11222333444455566667778888889999999999999999999999999999999


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhh
Q 011308          439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMAL  485 (489)
Q Consensus       439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (489)
                      ...+.+..+....+.+.++++++..++.+++.||||+++++|+++++
T Consensus       405 ~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f  451 (451)
T PF00083_consen  405 FPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF  451 (451)
T ss_pred             cccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence            98888887756678888888888888888999999999999998863

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=100.00  E-value=3.4e-36  Score=289.31  Aligned_cols=378  Identities=19%  Similarity=0.169  Sum_probs=249.2

Q ss_pred             chhhHHHHHHHHhhhhccccccccchhhhhhhcccc---cccch-HHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308           48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGF---SGSTM-AEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL  123 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~-~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  123 (489)
                      +++..+...+++.+++.+|...++...|.+.+|++.   +..+. +.+.+.+...++..++++++|+++||+|||+++..
T Consensus        19 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~   98 (432)
T PRK10406         19 RRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLI   98 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            455566677788899999999999999999999863   33322 11233344455555999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308          124 CALPMIIGASMSAITKNLW--------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF  195 (489)
Q Consensus       124 ~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  195 (489)
                      ++++++++++++++++++.        .++++|+++|++.|...+...+++.|++|+++|+++.++.+.+...|..+++.
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~  178 (432)
T PRK10406         99 SVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALL  178 (432)
T ss_pred             HHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988764        58899999999999999999999999999999999999998888888888877


Q ss_pred             hhcccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh
Q 011308          196 VGLPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS  267 (489)
Q Consensus       196 ~~~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (489)
                      +...+.        +..+ ||++|++.+++.++.......+||+|++..+                            + 
T Consensus       179 ~~~~~~~~~~~~~~~~~g-Wr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~----------------------------~-  228 (432)
T PRK10406        179 VVVVLQQTLEDAELREWG-WRIPFALGAVLAVVALWLRRQLDETSQQETR----------------------------A-  228 (432)
T ss_pred             HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHhcCCCCchHHHh----------------------------h-
Confidence            654443        2456 9999999888877665555557776542100                            0 


Q ss_pred             hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHH
Q 011308          268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMI  343 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~  343 (489)
                       .+   +..+++++++++..+...+...+.   ....+.....++|.++.+ .+.+...   ......+...++.++.|+
T Consensus       229 -~~---~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~  301 (432)
T PRK10406        229 -LK---EAGSLKGLWRNRRAFIMVLGFTAA---GSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGA  301 (432)
T ss_pred             -hc---ccccHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             00   012355666666554333322221   111233345566666644 5666544   333445566778888999


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308          344 LMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV  423 (489)
Q Consensus       344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  423 (489)
                      ++||++||+.+.....+..+...........    ..+....+....+.....+. ..+....+.+|.+|++.|+++.|+
T Consensus       302 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~  376 (432)
T PRK10406        302 LSDKIGRRTSMLCFGSLAALFTVPILSALQN----VSSPYAAFGLVMCALLIVSF-YTSISGILKAEMFPAQVRALGVGL  376 (432)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCccchhhhH
Confidence            9999999987766554433322211111110    01111111111111111111 123445678899999999999999


Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhh
Q 011308          424 CMAVHWV-INFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       424 ~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+...++ .+...|.+.+. .+..| +...++..+++.+++.+..++
T Consensus       377 ~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~~  422 (432)
T PRK10406        377 SYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSLM  422 (432)
T ss_pred             HHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence            9988775 34457777774 45556 444555555566665555443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=100.00  E-value=3.4e-36  Score=293.63  Aligned_cols=382  Identities=13%  Similarity=0.036  Sum_probs=275.7

Q ss_pred             chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308           48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP  127 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  127 (489)
                      ++|..+..++++.++..++.++++.++|.+.+|+|.+.++.  +|+.+.|.+++.++++++|+++||+|||++++.+.++
T Consensus         3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~--~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~   80 (495)
T PRK14995          3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNEL--LWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTL   80 (495)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            45678889999999999999999999999999999988887  8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          128 MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      +.++++++++++|++.++++|+++|+|.+...+.....+.+++ |+++|+++++++.....+|..+||.+++.+.+..+ 
T Consensus        81 ~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~g-  159 (495)
T PRK14995         81 FGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFY-  159 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC-
Confidence            9999999999999999999999999999998888888887765 67899999999999999999999999999999998 


Q ss_pred             HHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHH---------HHHhC-CCCchHH-------------HH
Q 011308          207 WRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAEL---------ERLFG-GLHVKYS-------------MA  262 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~-------------~~  262 (489)
                      |||.|++.....++..++ .+++||+++.  ++++.+......         ..... .......             ..
T Consensus       160 wr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  237 (495)
T PRK14995        160 WGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLG  237 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHH
Confidence            999999987766665544 3446776531  111111111000         00000 0000000             00


Q ss_pred             HHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHH
Q 011308          263 ELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGS  338 (489)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~  338 (489)
                      .....+. +.+.+.-..+++|++.+....+..++....    .....++.+.+++. .|.++..   ......++..++.
T Consensus       238 ~f~~~e~-~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~  312 (495)
T PRK14995        238 LFIRTQL-AASRPMIDMRLFTHRIILSGVVMAMTAMIT----LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSG  312 (495)
T ss_pred             HHHHHHh-cCCCCCcCHHHhCCcccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence            0000111 111222234677777766554444433332    23334455555544 4555444   5566678888999


Q ss_pred             HHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHH
Q 011308          339 IIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRA  418 (489)
Q Consensus       339 ~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  418 (489)
                      ++.|++.||+++|+.+..+.++..++..++.....     ..+.+.......+.+.+.+....+. .....+..|+++++
T Consensus       313 ~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~l~G~g~g~~~~~~-~~~~~~~~~~~~~g  386 (495)
T PRK14995        313 PIAGILVSRLGLRLVATGGMALSALSFYGLAMTDF-----STQQWQAWGLMALLGFSAASALLAS-TSAIMAAAPPEKAA  386 (495)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhHHHHHHHH-HHHHHhcCCHHhcc
Confidence            99999999999999888887777666655443221     1222333444555565555443333 34566778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          419 KAMAVCMAVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       419 ~~~g~~~~~~~~g~~~~~~~~g~l~~~  445 (489)
                      .+.++.++..++|+.+|+.+.|.+.++
T Consensus       387 ~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        387 AAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988763

>TIGR00891 2A0112 putative sialic acid transporter

Probab=100.00  E-value=3.4e-35  Score=281.74  Aligned_cols=387  Identities=19%  Similarity=0.208  Sum_probs=270.0

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA  125 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  125 (489)
                      .+++|+.+..++++.+.++++....++..|.+++++|.+.++.  |++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~   84 (405)
T TIGR00891         7 TRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDA--ASLISAALISRWFGALMFGLWGDRYGRRLPMVTSI   84 (405)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            3566788888999999999999999999999999999998888  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|..+++.+++.+.+..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~  164 (405)
T TIGR00891        85 VLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWG  164 (405)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988876543


Q ss_pred             -hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308          206 -WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP  284 (489)
Q Consensus       206 -~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                       .||+.|++.+++.++..+....+||++++..++++.++..+..++..+.....         +...++.....++.  .
T Consensus       165 ~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~--~  233 (405)
T TIGR00891       165 DGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRI---------ANIVMTLAAAMVQS--A  233 (405)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhh---------hhhhhhhhHHhhhh--h
Confidence             39999998776666655555667887654332222111111111111000000         00000000011111  1


Q ss_pred             ccccchhhhH-HHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308          285 RNFGVVFIGS-TLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFL  359 (489)
Q Consensus       285 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (489)
                      +..+...... ....+... .......+.+.++. +.+.+...   .....+++.+++.++.+++.||++||+.+..+..
T Consensus       234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~  312 (405)
T TIGR00891       234 GKRWPTFVYLVVLVLFANL-YSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLL  312 (405)
T ss_pred             hhhhHHHHHHHHHHHHHHH-HHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHH
Confidence            1112111111 11111111 11222333444443 35665544   4556678889999999999999999998877665


Q ss_pred             HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF  439 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  439 (489)
                      ...+........       ..+.+.......+.+.. ..+..+....++.|.+|++.|++++|+.+...+++..++|.+.
T Consensus       313 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~  384 (405)
T TIGR00891       313 AGQLLIIPVFAI-------GANVAVLGLGLFFQQML-VQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIG  384 (405)
T ss_pred             HHHHHHHHHHHh-------CCchHHHHHHHHHHHHH-HccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHH
Confidence            543322221111       11112222222222222 2333445566889999999999999999999999999999999


Q ss_pred             HHHHHHhc-cchhhHH
Q 011308          440 LRLLEQLG-PLILYTI  454 (489)
Q Consensus       440 g~l~~~~g-~~~~~~~  454 (489)
                      |.+.|..| |...+..
T Consensus       385 g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       385 ALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHhccccchhHHh
Confidence            99999988 6554443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=100.00  E-value=9.7e-36  Score=282.72  Aligned_cols=369  Identities=18%  Similarity=0.150  Sum_probs=269.0

Q ss_pred             hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      |..+....+..+..+. ....++..|.+.+++|++.++.  |++.+++.+++.+++++.|+++||+|||+++..+.++.+
T Consensus         3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~   79 (377)
T TIGR00890         3 WYVLVGTVIMCFTSGY-VYTWTLLAPPLGRYFGVGVTAV--AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYG   79 (377)
T ss_pred             EEEeHHHHHHHHHhhH-HhhhhhHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHH
Confidence            3334444444344333 5567889999999999988877  999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                      ++.+++++++|++.++++|++.|++.+...+.....+.+++| ++|+++.++...+.++|..+++++.+.+.+..+ ||+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~  157 (377)
T TIGR00890        80 LGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEG-VPA  157 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhccc-HHH
Confidence            999999999999999999999999999888888888999986 579999999999999998887767666666677 999


Q ss_pred             HHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308          210 CFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .|++.++..++..+..++ ++|+++.   +.++                          +++.++.....++.++++.++
T Consensus       158 ~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~  208 (377)
T TIGR00890       158 AFIYMGIIFLLVIVLGAFLIGYPPGQ---LIKT--------------------------NIEVSVKDYTVWEMLRTPQFW  208 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHheecCchh---cccc--------------------------CcccchhhhhHHHHHcCccHH
Confidence            999998887776655443 5544321   0000                          000001112345567777666


Q ss_pred             chhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 011308          289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAM  365 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  365 (489)
                      ......++..+.    ......+.+.+.++.+.+...   ......++.++++++.+++.||++||+.+..+.....++.
T Consensus       209 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~  284 (377)
T TIGR00890       209 VLYLSFFLNAVS----GLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGM  284 (377)
T ss_pred             HHHHHHHHHhHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence            554443333221    222233344445556655433   4556677888999999999999999998888877777766


Q ss_pred             HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  445 (489)
                      +.+.+...      ......+....+.+.+.+. ..+....+..|.+|+++|+++.|+.+...++|..++|.+.|.+.+.
T Consensus       285 ~~~~~~~~------~~~~~~~~~~~~~g~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  357 (377)
T TIGR00890       285 AAMLFIPM------LNDVLFLATVALVFFTWGG-TISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE  357 (377)
T ss_pred             HHHHHccc------chhHHHHHHHHHHHHHhcc-chhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55543321      1111122223333333332 2234455788999999999999999999999999999999999999


Q ss_pred             hccchhhHHHHHHHHHHH
Q 011308          446 LGPLILYTIFGSFCFLAV  463 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~  463 (489)
                      .||...|.+.+++++++.
T Consensus       358 ~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       358 IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             hchhhHHHHHHHHHHHhc
Confidence            999989888887776654

>PRK09952 shikimate transporter; Provisional

Probab=100.00  E-value=5.5e-35  Score=280.87  Aligned_cols=387  Identities=17%  Similarity=0.154  Sum_probs=258.5

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhh-hhhcc--cccccchHHHHHH-----HHHHHHHHHHHHHHHHhhcccCc
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLES-ISLDL--GFSGSTMAEGLVV-----STCLGGAFVGSMFSGWIADGIGR  117 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~--~~~~~~~~~g~~~-----s~~~~~~~~~~~~~g~l~dr~Gr  117 (489)
                      ..++++.+...+++.+++++|...++...|. +.+++  +.++. .  +++.     ++.+++..+++++.|+++||+||
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Gr   93 (438)
T PRK09952         17 LSRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFPQVSPA-M--GTLAAFATFGVGFLFRPLGGVVFGHFGDRLGR   93 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcH-H--HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence            3444567778888999999999988887774 45555  55544 2  5553     34556677999999999999999


Q ss_pred             hhHhhhhhHHHHHHHHHHhhhhhHH--------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHH
Q 011308          118 RRAFQLCALPMIIGASMSAITKNLW--------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLG  189 (489)
Q Consensus       118 r~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G  189 (489)
                      |+++..+.++++++++++++++|+.        .++++|+++|++.|...+....++.|++|+++|++..+..+.+..+|
T Consensus        94 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G  173 (438)
T PRK09952         94 KRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVG  173 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence            9999999999999999999999987        58889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccccc--------ccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHH
Q 011308          190 ILVALFVGLPAKE--------ILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM  261 (489)
Q Consensus       190 ~~i~~~~~~~l~~--------~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (489)
                      .+++..+...+..        ..+ ||++|++.+++.++........||+|++...+++.++                  
T Consensus       174 ~~l~~~~~~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~------------------  234 (438)
T PRK09952        174 LLLSTGLVSLISMMTTDEQFLSWG-WRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA------------------  234 (438)
T ss_pred             HHHHHHHHHHHHHhCCHHHhhccC-hHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc------------------
Confidence            9998777665542        456 9999999887765554444457888765322211000                  


Q ss_pred             HHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHH
Q 011308          262 AELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSG  337 (489)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~  337 (489)
                              .+ ++....+.+++++..+.......  ....+ .......+.+.+.. ..+.+...   .....++..+++
T Consensus       235 --------~~-~~~~~~~~l~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~  302 (438)
T PRK09952        235 --------AK-KRIPVIEALLRHPGAFLKIIALR--LCELL-TMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLT  302 (438)
T ss_pred             --------cc-ccCCHHHHHHHchHHHHHHHHHH--HHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence                    00 00011122344444333222111  11111 22233344454443 35555543   334456667788


Q ss_pred             HHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhH
Q 011308          338 SIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIR  417 (489)
Q Consensus       338 ~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  417 (489)
                      .++.|+++||++||+.+..+.++..++...+......    .......+....+.+.+.+.. .+..++++.|.+|++.|
T Consensus       303 ~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~p~~~r  377 (438)
T PRK09952        303 IPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEA----QSIFWIVFFSIMLANIAHDMV-VCVQQPMFTEMFGASYR  377 (438)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCcchh
Confidence            8899999999999998877766554443322221111    111222222223323333222 23456688999999999


Q ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHHhhhcccC
Q 011308          418 AKAMAVCMAVHW-VINFFVGLLFLRLLEQLG--PLILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       418 ~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      +++.|+.+.... +++.++|.+.+++.+..+  |...+...+++++++.+..+. .++
T Consensus       378 ~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~-~~~  434 (438)
T PRK09952        378 YSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL-MKD  434 (438)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-ccc
Confidence            999999766654 899999999999988653  666677677777666655543 344

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=100.00  E-value=1.1e-34  Score=271.30  Aligned_cols=373  Identities=15%  Similarity=0.081  Sum_probs=271.2

Q ss_pred             hhHHHHHHHHhhhhccccccccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ++.+....++.++......+.++..+.+.+ |+|+|.+|.  +++.+++.+++.++.++.|++.||+|.|+++.++.+++
T Consensus        33 ~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~--g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~  110 (462)
T PRK15034         33 RRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQL--FLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAIL  110 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence            467777778888888888899999998876 899998887  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh-----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc--
Q 011308          129 IIGASMSAIT-----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK--  201 (489)
Q Consensus       129 ~i~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~--  201 (489)
                      ++.+++.+++     +|++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++...+.  
T Consensus       111 ~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~  189 (462)
T PRK15034        111 IIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFV  189 (462)
T ss_pred             HHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999987     8999999999999998 7788999999999999999999999997666666665555443322  


Q ss_pred             ----------------cccchHHHHHHHhHHHHHHHHHHhhcc-cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHH
Q 011308          202 ----------------EILGWWRICFWVATIPAAFLALFMEFC-AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAEL  264 (489)
Q Consensus       202 ----------------~~~~~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (489)
                                      +..+ ||..+++..++.++..++.++. ++.++                               
T Consensus       190 ~l~~~~G~~~~~~~~g~~~~-~~~~~~~~~~~~iv~~i~~~~~~~~~~~-------------------------------  237 (462)
T PRK15034        190 PVFAFLGVNGVPQADGSVMS-LANAAWIWVPLLAIATIAAWSGMNDIAS-------------------------------  237 (462)
T ss_pred             HHHHHhccccccccccchHH-HHHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------------
Confidence                            1233 8888888888777666555443 33221                               


Q ss_pred             hhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHH
Q 011308          265 SKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIA  341 (489)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  341 (489)
                            .+.......+.+|++..|...+.+++.+.    .+..+.+++|.+.++ .++...   ...+..+...+.++++
T Consensus       238 ------~~~~~~~~~~vlk~~~~Wllslly~~tFG----~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~~~l~rplg  306 (462)
T PRK15034        238 ------SRASIADQLPVLQRLHLWLLSLLYLATFG----SFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFIGAIARSVG  306 (462)
T ss_pred             ------cccCHHHHHHHhCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHHHHHHHHhh
Confidence                  01122345568888988877666655444    344444455555444 121111   2334456778889999


Q ss_pred             HHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh-------
Q 011308          342 MILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN-------  414 (489)
Q Consensus       342 g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------  414 (489)
                      |+++||+|+++++..+.+...++.........  .....+.+.....++......+.+..++. -++.+.+|+       
T Consensus       307 G~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp--~~~~~~~~~~~~~~~~l~~~~G~gngsvf-k~ip~~f~~~~~~~~~  383 (462)
T PRK15034        307 GAISDKFGGVRVTLINFIFMAIFSALLFLTLP--GTGSGNFIAFYAVFMGLFLTAGLGSGSTF-QMIAVIFRQITIYRVK  383 (462)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc--cccccHHHHHHHHHHHHHHHhcccchHHH-HhhHHHHhhhhhhccc
Confidence            99999999999998888766665543322221  11112333344444444455555554443 356666663       


Q ss_pred             --------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhhccc
Q 011308          415 --------------RIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       415 --------------~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                                    ++.|.+.|+....+.+|+++.|.+.|...+..| +...|+.+.+..+++.++.+.+..
T Consensus       384 ~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~  455 (462)
T PRK15034        384 MKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG  455 (462)
T ss_pred             ccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence                          268899999999999999999999999988876 666788888888888777765543

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=4.2e-35  Score=252.82  Aligned_cols=416  Identities=19%  Similarity=0.261  Sum_probs=312.4

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA  125 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  125 (489)
                      .+..|.......++.....+-.-..+-+.|...+.+|.+..+.  .++......|..+++..+|..+|++|||+.+.+..
T Consensus        73 grfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w~~s~~q~--~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~  150 (528)
T KOG0253|consen   73 GRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVWGPSEGQA--PLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTF  150 (528)
T ss_pred             ccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhchhhhhh--hHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhH
Confidence            4556666666666666666655556667788888888665555  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      +..++...+.+.++|+..+.+.|.+.|+|.|+ .|...++-.|..|..+|...+-.. ..+.+|.++...++.......|
T Consensus       151 l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~g  228 (528)
T KOG0253|consen  151 LVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFG  228 (528)
T ss_pred             HHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999 889999999999999999887666 8899999999999999999999


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHH--------HHHhhh--------hh
Q 011308          206 WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM--------AELSKS--------ER  269 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--------~~  269 (489)
                       |||.......+..+.+++.+++||+||++..++++.++.+.++++.+.+..+.+.        ++.+++        .+
T Consensus       229 -wr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~  307 (528)
T KOG0253|consen  229 -WRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSS  307 (528)
T ss_pred             -HHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhc
Confidence             9999999998888888888999999999999999999998888886655432211        000000        11


Q ss_pred             ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcC--------------------CCCCc---h
Q 011308          270 GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAG--------------------VPSDS---G  326 (489)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~---~  326 (489)
                      ..++...+..+++.++..+..++.... ++.+...+.........+++...                    .+...   -
T Consensus       308 a~ke~rg~~~nLlsp~lrkttlllw~i-wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrd  386 (528)
T KOG0253|consen  308 AAKEVRGGTTNLLSPKLRKTTLLLWRI-WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRD  386 (528)
T ss_pred             cccccccchHhhcChHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHH
Confidence            122334455666665444444433333 33222223333333333322111                    00000   2


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308          327 NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSL  406 (489)
Q Consensus       327 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (489)
                      ..+..+...+|.++.+++.||+|||+.+...++++++..+.+.......         .+....+.+-.+..+.....++
T Consensus       387 llitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn---------~~tvllf~arafisg~fqvaYv  457 (528)
T KOG0253|consen  387 LLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRN---------AYTVLLFTARAFISGAFQVAYV  457 (528)
T ss_pred             HHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcc---------hhHHHHHHHHHHHhchheEEEE
Confidence            4556788999999999999999999999999999888877766554322         2222223333333444557788


Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308          407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTL  478 (489)
Q Consensus       407 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (489)
                      |..|++|+..|+++.|....++.+|+++.|.+.  +........+..+++++++++.+...++.-|+|+|++
T Consensus       458 YtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l  527 (528)
T KOG0253|consen  458 YTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL  527 (528)
T ss_pred             ecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence            999999999999999999999999999999997  4444455667788889999988888888889998764

>TIGR00893 2A0114 d-galactonate transporter

Probab=100.00  E-value=1.6e-35  Score=283.30  Aligned_cols=386  Identities=16%  Similarity=0.130  Sum_probs=272.1

Q ss_pred             hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhh
Q 011308           61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKN  140 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  140 (489)
                      +...++...++...|.+.+++|.+..+.  |++.+++.++..+++++.|+++||+|||+++..+.++.+++.++++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~   81 (399)
T TIGR00893         4 VINYLDRANLSFAAPMLQEDLGLSAAQY--GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGA   81 (399)
T ss_pred             hHHHHHHHhhhHhHHHHHHhhCCChhhH--HHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcC
Confidence            4556677788889999999999988887  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308          141 LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF  220 (489)
Q Consensus       141 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~  220 (489)
                      ++.++++|+++|++.+...+....++.|++|+++|++++++.+....+|.++++.+++.+.+..+ ||+.|++.++..++
T Consensus        82 ~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~  160 (399)
T TIGR00893        82 YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFS-WQWAFIIEGVLGII  160 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999888888 99999998887776


Q ss_pred             HHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHh
Q 011308          221 LALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFAL  299 (489)
Q Consensus       221 ~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      ..+..+ +.||+|+..  +...++.++...+..         .+..+.+++++......++.++++.++...+..++...
T Consensus       161 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (399)
T TIGR00893       161 WGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGL---------LAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNI  229 (399)
T ss_pred             HHHHhhheecCCCCcc--ccCCHHHHhhcchhh---------ccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHh
Confidence            655544 456654310  111111111000000         00000111112233456677777776655555444443


Q ss_pred             hhhcchhHHHHhHHHHHHh-cCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhH-HHHHHHHHHHHHHHHHHhhc
Q 011308          300 QQLSGINAVFYFSSTVFKN-AGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLL-LGSFLGMAIAMGVQAIAATS  374 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  374 (489)
                          .......+.+.++.+ .+.+..   .......++.+++.++.+++.||++||+.. ........++.+........
T Consensus       230 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (399)
T TIGR00893       230 ----GLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFA  305 (399)
T ss_pred             ----HHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence                333444455555443 454433   355666788889999999999999988621 11111111111111111100


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhH
Q 011308          375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYT  453 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~  453 (489)
                      .. .....+ ........ ...+.+..+....+..|..|++.|+++.|+.+...++|..++|.+.|.+.+..| +...+.
T Consensus       306 ~~-~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~  382 (399)
T TIGR00893       306 TN-YVNIPY-AALALVAL-GFFGLGAGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALM  382 (399)
T ss_pred             hc-cchhHH-HHHHHHHH-HHhchhhhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHH
Confidence            00 011111 12222222 222223456777889999999999999999999999999999999999999988 888888


Q ss_pred             HHHHHHHHHHHHhh
Q 011308          454 IFGSFCFLAVIYVK  467 (489)
Q Consensus       454 ~~~~~~~~~~~~~~  467 (489)
                      +.+++++++.+..+
T Consensus       383 ~~~~~~~~~~~~~~  396 (399)
T TIGR00893       383 VVAALALIGALSYL  396 (399)
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888777766554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=100.00  E-value=1.5e-34  Score=276.13  Aligned_cols=364  Identities=18%  Similarity=0.165  Sum_probs=262.9

Q ss_pred             hHHHHHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           51 PHVLVAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      +.+..+++..++..++..+..+.+|. +.+++|.+..+.  |++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~   92 (399)
T PRK05122         15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLA--GLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCA   92 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHH--HHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHH
Confidence            34556677778888888888889986 578899988877  999999999999999999999999999999999999888


Q ss_pred             HHHHHHhhh--------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308          130 IGASMSAIT--------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK  201 (489)
Q Consensus       130 i~~~~~~~~--------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  201 (489)
                      ++.+.+.++        .+++.+++.|+++|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~  172 (399)
T PRK05122         93 LSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLY  172 (399)
T ss_pred             HHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHH
Confidence            877766543        257788999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhh
Q 011308          202 EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSEL  281 (489)
Q Consensus       202 ~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      +..+ ||+.+++.++..++..+.....|++++   ++++                                  +.++++.
T Consensus       173 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~----------------------------------~~~~~~~  214 (399)
T PRK05122        173 HWGG-LAGLGLLIMLLALLGLLLARPRPAVPP---VKGE----------------------------------RLPFRRV  214 (399)
T ss_pred             Hccc-HHHHHHHHHHHHHHHHHHHhcCCCCCC---CCcc----------------------------------chhHHHH
Confidence            8888 999988766665444333322333211   0000                                  0011111


Q ss_pred             hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308          282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS-DSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG  360 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (489)
                      +++  .+.......+..+    .......+.+.++.+.+.+. .......+++.+++.++.+++.||+++|+.+..+..+
T Consensus       215 ~~~--~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~  288 (399)
T PRK05122        215 LGR--VWPYGMGLALASI----GFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLV  288 (399)
T ss_pred             HHH--HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            111  1111111111111    12233344454455545432 2244566778889999999999999999988877777


Q ss_pred             HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFL  440 (489)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g  440 (489)
                      ..++..++....        +.+..+....+.+.+.+.. .+.......|..|+++|+++.|+++...++|..+++.+.|
T Consensus       289 ~~~~~~~~~~~~--------~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g  359 (399)
T PRK05122        289 EILGLLLLWLAP--------SPWMALIGAALTGFGFSLV-FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAG  359 (399)
T ss_pred             HHHHHHHHHHhc--------cHHHHHHHHHHHHHhHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776665554432        1222333444455544432 2343445668889999999999999999999999999999


Q ss_pred             HHHHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308          441 RLLEQLGPLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       441 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .+.+..|++..+.+.+++++++.++.+..
T Consensus       360 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (399)
T PRK05122        360 LVASWFGYPSIFLAAALAALLGLALTWLL  388 (399)
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998888888877666543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=100.00  E-value=6.8e-34  Score=269.36  Aligned_cols=368  Identities=17%  Similarity=0.153  Sum_probs=263.8

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      |+.|..+..+.+..+..........+.+|.+.+|+|+++++.  |+..+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~   93 (394)
T PRK10213         16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVA--GQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAV   93 (394)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHH
Confidence            334555555555555555555556667899999999998888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      +.+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++|.+++.+.+..+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~g-  172 (394)
T PRK10213         94 LLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIG-  172 (394)
T ss_pred             HHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999888 


Q ss_pred             HHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308          207 WRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR  285 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      ||+.|++.++..++..+... ..||+++.     +                               ++.....++.++++
T Consensus       173 w~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-------------------------------~~~~~~~~~~l~~~  216 (394)
T PRK10213        173 WRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-------------------------------SHQKQNTFRLLQRP  216 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-------------------------------ccchhHHHHHhcCH
Confidence            99999998876665544433 35654310     0                               00011234566667


Q ss_pred             cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      .++...+..++.....   .....+..|.+.++.|.+...   .....+++.+++.++.+++.||.+++...........
T Consensus       217 ~~~~~~~~~~~~~~~~---~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~~~l~~~~~~~~~  293 (394)
T PRK10213        217 GVMAGMIAIFMSFAGQ---FAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVKLALAGAPLVLAV  293 (394)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence            6665544333333221   122223345566666777654   4555667888999999999999544333333322222


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      ..+++....        .+.+.......+.+.+++.. .+...+++.+..| ++++...+......++|..+||.+.|.+
T Consensus       294 ~~~~l~~~~--------~~~~~~~~~~~l~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l  363 (394)
T PRK10213        294 SALVLTLWG--------SDKIVATGVAIIWGLTFALV-PVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYA  363 (394)
T ss_pred             HHHHHHHHh--------hhHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222222221        11233344445555555433 3444446677777 4577888888888899999999999999


Q ss_pred             HHHhccchhhHHHHHHHHHHHHHh
Q 011308          443 LEQLGPLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .|..|+...+...+++.++..+.+
T Consensus       364 ~~~~g~~~~~~~~~~~~~~~~~~~  387 (394)
T PRK10213        364 LDNIGLTSPLMLSGTLMLLTALLV  387 (394)
T ss_pred             HhccChhhHHHHHHHHHHHHHHHH
Confidence            999998877777766665555444

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=100.00  E-value=1.3e-34  Score=279.88  Aligned_cols=395  Identities=13%  Similarity=0.069  Sum_probs=260.8

Q ss_pred             chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308           48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP  127 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  127 (489)
                      ++|..+...++.......++..++...|.+.++ |++.++.  |++.+++.+++.+++++.|+++||+|||+++..+.++
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~-g~s~~~~--g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~  102 (452)
T PRK11273         26 LRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQ-GFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL  102 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHc-CCCHHHH--HHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHH
Confidence            345555555566666666666677788988888 9888877  9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhh----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHH-HHHHhhccccc
Q 011308          128 MIIGASMSAITK----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL-VALFVGLPAKE  202 (489)
Q Consensus       128 ~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~l~~  202 (489)
                      .+++.+++++++    +++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|.. .+++++..+..
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~  182 (452)
T PRK11273        103 AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAW  182 (452)
T ss_pred             HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            999999888753    7888899999999999988888888899999999999999999999998864 45554433333


Q ss_pred             ccchHHHHHHHhHHHHHHHHH-HhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhh-HHh
Q 011308          203 ILGWWRICFWVATIPAAFLAL-FMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVK-FSE  280 (489)
Q Consensus       203 ~~~~Wr~~f~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  280 (489)
                      ..+ ||+.|++.+++.++..+ ..+++||+|+....+ +.++.++   +.      +   ++..++++++.+.... .+.
T Consensus       183 ~~g-w~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~---~~------~---~~~~~~~~~~~~~~~~~~~~  248 (452)
T PRK11273        183 FND-WHAALYMPAFAAILVALFAFAMMRDTPQSCGLP-PIEEYKN---DY------P---DDYNEKHEQELTAKQIFMQY  248 (452)
T ss_pred             hcc-HHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCC-Chhhhhh---cc------c---cccccccCCCccHHHHHHHH
Confidence            346 99999998877666544 455578877531111 1111000   00      0   0000000000011111 223


Q ss_pred             hhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC--CchhH
Q 011308          281 LISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLG--RRVLL  354 (489)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~--~~~~~  354 (489)
                      +++++.+|...+..++....    ......+.|.++++ .+.+...   ......++.+++.++.|+++||++  ||...
T Consensus       249 ~~~~~~~~~~~l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~  324 (452)
T PRK11273        249 VLPNKLLWYIAIANVFVYLL----RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT  324 (452)
T ss_pred             HHcChHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchH
Confidence            56777776655555444432    23445566777665 4555443   445566788889999999999994  44332


Q ss_pred             H-HHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHH
Q 011308          355 L-GSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF  433 (489)
Q Consensus       355 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~  433 (489)
                      . ....+..++.+++.+..      ..+.+.........+.... +.......+..|.+|++.+|++.|+.+...++|+.
T Consensus       325 ~~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~  397 (452)
T PRK11273        325 GVFFMTLVTIATIVYWLNP------AGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGS  397 (452)
T ss_pred             HHHHHHHHHHHHHHHHHhc------ccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHH
Confidence            2 22222222222221111      1111112222222222211 11122234567899999999999999999999876


Q ss_pred             H-HHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308          434 F-VGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV  470 (489)
Q Consensus       434 ~-~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      + +|.+.|.+.|+.|+...|.+.+++++++.+......
T Consensus       398 ~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~  435 (452)
T PRK11273        398 VAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  435 (452)
T ss_pred             HhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            5 799999999999999999988888888766665433

>PRK15075 citrate-proton symporter; Provisional

Probab=100.00  E-value=8.7e-34  Score=272.83  Aligned_cols=359  Identities=18%  Similarity=0.262  Sum_probs=238.2

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHH-----HHHHHHHHHHHHHhhcccCchhHhhh
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTC-----LGGAFVGSMFSGWIADGIGRRRAFQL  123 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~-----~~~~~~~~~~~g~l~dr~Grr~~l~~  123 (489)
                      |++....++++.+++++|+..+++..|.+.+|++.++.+.. ++..+..     .++..+++++.|+++||+|||++++.
T Consensus        13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~   91 (434)
T PRK15075         13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFA-SLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIV   91 (434)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchH-HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHH
Confidence            34467888899999999999999999999999998877651 2323322     22334789999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhhhHHH--------HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308          124 CALPMIIGASMSAITKNLWG--------MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF  195 (489)
Q Consensus       124 ~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  195 (489)
                      +.+++++++++++++++++.        ++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.
T Consensus        92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~  171 (434)
T PRK15075         92 TLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAAL  171 (434)
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999874        6889999999999999999999999999999999999999888888877777


Q ss_pred             hhcccc--------cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh
Q 011308          196 VGLPAK--------EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS  267 (489)
Q Consensus       196 ~~~~l~--------~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (489)
                      +++.+.        +..+ ||++|++..+...+........||++++..+++                            
T Consensus       172 ~g~~l~~~~~~~~~~~~g-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~----------------------------  222 (434)
T PRK15075        172 LGYLLNQWLSPAQMAEWG-WRIPFLIGCLIVPFIFLIRRSLEETEEFLARKH----------------------------  222 (434)
T ss_pred             HHHHHHHhCCHHHHhccc-hHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhh----------------------------
Confidence            766652        3566 999999855443222222222333322110000                            


Q ss_pred             hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHH
Q 011308          268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMI  343 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~  343 (489)
                       +  .+....+++..+++..+   .......+.....+.....+.|.++++ .|.+...   ......++.+++.++.|+
T Consensus       223 -~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~  296 (434)
T PRK15075        223 -R--PSMREIFRSLAANWRIV---LAGMLMVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGA  296 (434)
T ss_pred             -c--cccccHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             0  00001112222222111   111111222222345566777887765 5776554   344566778899999999


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHH-HHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308          344 LMDKLGRRVLLLGSFLGMAIAMG-VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA  422 (489)
Q Consensus       344 l~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  422 (489)
                      ++||++||+....+..+..+... .+.....     ..+.........+.+.+++. ..+....+..|.+|++.|+++.|
T Consensus       297 l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~e~~p~~~rg~~~g  370 (434)
T PRK15075        297 LSDRIGRRPVLIAFTVLAILTAYPALSWLVA-----APSFARMLAVELWLSFLYGS-YNGAMVVALTEVMPAEVRTAGFS  370 (434)
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-----CCchHHHHHHHHHHHHHHHH-HHhhHHHHHHHHCCCCccchhee
Confidence            99999999887765444322211 1111111     11111111212222233332 22344457889999999999999


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhccc
Q 011308          423 VCMAVHWV-INFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       423 ~~~~~~~~-g~~~~~~~~g~l~~~~g~~  449 (489)
                      +.+.+... ++.++|.+.|.+.|..|+.
T Consensus       371 ~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        371 LAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            97666554 5888999999999988853

>PRK03893 putative sialic acid transporter; Provisional

Probab=100.00  E-value=7.2e-34  Score=279.37  Aligned_cols=405  Identities=18%  Similarity=0.210  Sum_probs=273.2

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +++|+.+..++++.+++.++....++.+|.+.+++|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~   93 (496)
T PRK03893         16 RAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQA--ASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIV   93 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence            345667778888889999999999999999999999988877  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      +.+++.++.+++++++.+++.|++.|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ 
T Consensus        94 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-  172 (496)
T PRK03893         94 LFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWG-  172 (496)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998888 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHH-------h-hhhhccchhhh--
Q 011308          207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAEL-------S-KSERGDEADAV--  276 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~~~~~~--  276 (489)
                      ||+.|++.++..++..+....+||++++..++++.++.++..+...............       . ...........  
T Consensus       173 w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (496)
T PRK03893        173 WRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVA  252 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHH
Confidence            9999988655554444444456776654322221111111111000000000000000       0 00000000000  


Q ss_pred             --------hHHh-hh-ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHH
Q 011308          277 --------KFSE-LI-SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAM  342 (489)
Q Consensus       277 --------~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g  342 (489)
                              .+.. .. .++..+..........+..+........++|.+++ +.|.+...   ......++.+++.++.|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g  332 (496)
T PRK03893        253 VLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGG  332 (496)
T ss_pred             HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    0000 00 00111111111111111111111234456677774 56666544   55566788889999999


Q ss_pred             HHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308          343 ILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA  422 (489)
Q Consensus       343 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  422 (489)
                      ++.||+++|+.+..+..+..+..+......      ....+ ......+.....+.+..+....++.|.+|++.|++++|
T Consensus       333 ~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  405 (496)
T PRK03893        333 FLGDWLGTRKAYVCSLLISQLLIIPVFAIG------GANVW-VLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLG  405 (496)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHhhcc------ccHHH-HHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccc
Confidence            999999999887776655544433322211      11111 11122222222333334455667889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 011308          423 VCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFL  461 (489)
Q Consensus       423 ~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  461 (489)
                      +.+....+|+.++|.+.|.+.+..|+...+...++++.+
T Consensus       406 ~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~  444 (496)
T PRK03893        406 FTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTF  444 (496)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH
Confidence            999999999999999999999999988777665544433

>PRK10091 MFS transport protein AraJ; Provisional

Probab=100.00  E-value=2.3e-34  Score=272.44  Aligned_cols=368  Identities=14%  Similarity=0.090  Sum_probs=262.1

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      +..+.+..+..........+.+|.+++|+|.+.++.  |++.+.+.+++.++++++|+++||+|||+++..+.++.+++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~   82 (382)
T PRK10091          5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAA--GHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGN   82 (382)
T ss_pred             HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHH--hHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHH
Confidence            455666777778888888899999999999988887  999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHH
Q 011308          133 SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFW  212 (489)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~  212 (489)
                      +++++++|++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+.|+
T Consensus        83 ~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-wr~~f~  161 (382)
T PRK10091         83 AMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFS-WRYTFL  161 (382)
T ss_pred             HHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhcc-HHHHHH
Confidence            9999999999999999999999999888888999999999999999999999999999999999999988888 999999


Q ss_pred             HhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchh
Q 011308          213 VATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVF  291 (489)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +.++..++..+. ..++||.++    +.+. +                              .+.. .+.++++..+...
T Consensus       162 ~~~~~~~~~~~~~~~~lp~~~~----~~~~-~------------------------------~~~~-~~~~~~~~~~~~~  205 (382)
T PRK10091        162 LIAVFNIAVLASIYFWVPDIRD----EAKG-G------------------------------LREQ-FHFLRSPAPWLIF  205 (382)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCc----cccc-C------------------------------HHHH-HHHhcChHHHHHH
Confidence            988876665544 344676532    0000 0                              0000 1233444443322


Q ss_pred             hhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308          292 IGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (489)
                      ....+..   .....+..+..+.+.+..|.+...   .....+++.++++++.+++.||+++|+.+..+..+..++.+++
T Consensus       206 ~~~~~~~---~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        206 AATMFGN---AGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            2222111   111122222233333345666554   4556678889999999999999999998887777766665544


Q ss_pred             HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc
Q 011308          369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g  447 (489)
                      ......       .+.......+.+.+......+.......+..|++.++.+  ..+...++|..+||.+.|.+.|. .+
T Consensus       283 ~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~  353 (382)
T PRK10091        283 FFFGGM-------KTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLA  353 (382)
T ss_pred             HHHHhh-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccC
Confidence            332211       112222333333333222222333344455555555554  34677899999999999999996 57


Q ss_pred             cchhhHHHHHHHHHHHHHhhhccc
Q 011308          448 PLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      |...+.+.++++++.........+
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~  377 (382)
T PRK10091        354 YNYVALPAALLSFAAMSSLLLYGR  377 (382)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhh
Confidence            888888887776666555444333

>PRK10489 enterobactin exporter EntS; Provisional

Probab=100.00  E-value=3.1e-35  Score=282.07  Aligned_cols=383  Identities=16%  Similarity=0.096  Sum_probs=281.1

Q ss_pred             HhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh-
Q 011308           59 SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI-  137 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-  137 (489)
                      ..++..+......+.+|.+.++++.+..+.  |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.++.+. 
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~  102 (417)
T PRK10489         25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQV--GLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALN  102 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHH
Confidence            344555566677888899999988766655  99999999999999999999999999999999998888877665542 


Q ss_pred             ----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          138 ----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       138 ----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                          .++++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+..+|..+|+.+++.+.+..+ |++.|++
T Consensus       103 ~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~-~~~~~~~  181 (417)
T PRK10489        103 AFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGG-VAWNYGL  181 (417)
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHh-hHHHHHH
Confidence                56788999999999999888888889999999999999999999999999999999999999988878 9999998


Q ss_pred             hHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          214 ATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      .++..++..+..+.+||+++.   +.+++                          +..++....++..++++.++...+.
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~---~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  232 (417)
T PRK10489        182 AAAGTFITLLPLLRLPALPPP---PQPRE--------------------------HPLRSLLAGFRFLLASPVVGGIALL  232 (417)
T ss_pred             HHHHHHHHHHHHHhCCCCCCC---Ccccc--------------------------cchHHHHHHHHHHHcChHHHHHHHH
Confidence            887777666666667765421   00000                          0000111234455666665544433


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA  369 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (489)
                      .++...     ......+.|.+.++ .+.+...   .....+++.+++.++.+++.||.++++.+..+..+..++.+++.
T Consensus       233 ~~~~~~-----~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~  307 (417)
T PRK10489        233 GGLLTM-----ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG  307 (417)
T ss_pred             HHHHHH-----HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH
Confidence            332221     12234455666665 5665544   44556678889999999999997777777777666666555443


Q ss_pred             HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308          370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  449 (489)
                      +..        +.+.......+++.+.+. ..+...+++.|..|++.||+++|+.+...++|..++|.+.|.+.+..|+.
T Consensus       308 ~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~  378 (417)
T PRK10489        308 LMP--------MWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPV  378 (417)
T ss_pred             ccc--------hHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchh
Confidence            321        122233333334433322 22344567889999999999999999999999999999999999999988


Q ss_pred             hhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhCC
Q 011308          450 ILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLP  487 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (489)
                      ..+...+++.++..++.....++.|+++++|++++..+
T Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (417)
T PRK10489        379 ASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDASD  416 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcccccccccccccCCCCC
Confidence            88888888777777777777788888888888776554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=100.00  E-value=1e-34  Score=282.37  Aligned_cols=396  Identities=15%  Similarity=0.091  Sum_probs=274.1

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhh----------------------cccccccchHHHHHHHHHHHHHHH
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISL----------------------DLGFSGSTMAEGLVVSTCLGGAFV  103 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----------------------~~~~~~~~~~~g~~~s~~~~~~~~  103 (489)
                      .+.+|.+..+++++....+.++..++.+.+.+.+                      |++++..+.  |++.+.+.+++.+
T Consensus        14 ~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~s~~~~~~~~   91 (465)
T TIGR00894        14 CSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQ--GLILSSHFYGQII   91 (465)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHh--hHHHHHHHHHHHH
Confidence            4566778888888888889999999888888876                      677777766  9999999999999


Q ss_pred             HHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh--hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH
Q 011308          104 GSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT--KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS  181 (489)
Q Consensus       104 ~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  181 (489)
                      ++++.|+++||+|||+++..+.++++++++++.++  .+++.+++.|+++|++.+...+....++.|++|+++|++++++
T Consensus        92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~  171 (465)
T TIGR00894        92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGM  171 (465)
T ss_pred             HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHH
Confidence            99999999999999999999999999998887554  5688899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhccccccc-chHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchH
Q 011308          182 TQIAACLGILVALFVGLPAKEIL-GWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKY  259 (489)
Q Consensus       182 ~~~~~~~G~~i~~~~~~~l~~~~-~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (489)
                      ...+..+|.++++++++.+.+.. + ||+.|++.++..++..+.+++ .+|+|+.. ++.++++ ++...+         
T Consensus       172 ~~~~~~~g~~i~~~l~~~l~~~~~g-w~~~f~i~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~-~~~i~~---------  239 (465)
T TIGR00894       172 STSGFQLGTFIFLPISGWLCESWGG-WPMIFYVFGIVGCAWSLLWFVFPADDPSIH-PCISKFE-KKYINS---------  239 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCC-CCeehhhhhHHHHHHHHHHHHHhcCCcccC-CCCCHHH-HHHHHh---------
Confidence            99999999999999999998874 7 999999999888777666554 56666411 1111111 111100         


Q ss_pred             HHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHH
Q 011308          260 SMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANL  335 (489)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~  335 (489)
                          ..++++.+.+....++++++++..+...+..+....    ....+..|+|.++++ .+.+...   ...+..++..
T Consensus       240 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~  311 (465)
T TIGR00894       240 ----SLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFW----LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAW  311 (465)
T ss_pred             ----hcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHH
Confidence                000001111122357788888877766555444443    445556677766654 4555433   4455678888


Q ss_pred             HHHHHHHHHHhhhCCchhHH---HHHHHHHHHH---HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc
Q 011308          336 SGSIIAMILMDKLGRRVLLL---GSFLGMAIAM---GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS  409 (489)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      ++.++.|+++||+++|+...   .......++.   .+..+.....   .......+..+.+.+.+.+ +..+.......
T Consensus       312 i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~  387 (465)
T TIGR00894       312 LCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL---SAAFYLTIIILTLANAVSS-GPLAGVLINSL  387 (465)
T ss_pred             HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc---CCchHHHHHHHHHHHHHhh-hhhhhhhhchh
Confidence            99999999999976442210   0111111111   1111111100   1111222222222222222 22223333455


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccchhhHHHHHHHHHHHHHhhh
Q 011308          410 EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL---GPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      |..| +.+|.+.|+.+..+.+++.++|.+.|.+.+..   +|...|.+.+++.+++.++...
T Consensus       388 ~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~  448 (465)
T TIGR00894       388 DLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLI  448 (465)
T ss_pred             hcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeee
Confidence            7766 58999999999999999999999999887653   3777888888888777665543

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=100.00  E-value=4.5e-34  Score=273.12  Aligned_cols=366  Identities=16%  Similarity=0.096  Sum_probs=267.8

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      ++.+.....+.+..+...+....+.+.+|.+.+++|.+.++.  ++..+.+.+++.+++++.|+++||+|||+++..+.+
T Consensus         9 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   86 (406)
T PRK15402          9 RQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWV--PTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVA   86 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            455666777777888888888889999999999999988777  899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      +.+++.+++.++++++.+++.|+++|++.+...+.....+.|++|+++|.+..++......+|..++|.+++.+.+..+ 
T Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~-  165 (406)
T PRK15402         87 FFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLP-  165 (406)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence            9999999999999999999999999999998888899999999999999999999988888999999999999988888 


Q ss_pred             HHHHHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308          207 WRICFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR  285 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      ||+.|++.++..++..+.. ...||+++.   ++++                           .+.++...+++++++++
T Consensus       166 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------------~~~~~~~~~~~~~~~~~  215 (406)
T PRK15402        166 WRGMFVLFAALAALSFFGLWRAMPETAGR---VGEK---------------------------LSLKELGRDYKLVLKNR  215 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCCCcc---cccc---------------------------ccHHHHHHHHHHHHcCc
Confidence            9999999888777665543 346665421   0000                           00011123456677777


Q ss_pred             cccchhhhHHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308          286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM  361 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (489)
                      .++...+...+.....    .....+.|.++ +..+.+...   ......++.+++.++.+++.||+++|+.+..+.++.
T Consensus       216 ~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~  291 (406)
T PRK15402        216 RFVAGALALGLVSLPL----LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPM  291 (406)
T ss_pred             HHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            7665544443333221    12222334443 335555443   233445677889999999999999999888887777


Q ss_pred             HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR  441 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~  441 (489)
                      .++..++.......   ..+.+..+....+++.+.+.... ......... +++++|++.++++....++..+|+.+.+.
T Consensus       292 ~~g~~~~~~~~~~~---~~~~~~~~~~~~~~g~g~~~~~~-~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~  366 (406)
T PRK15402        292 VAGLLLAALATVIS---SHAYLWLTAGLSLYAFGIGLANA-GLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKH  366 (406)
T ss_pred             HHHHHHHHHHHHcc---cccHHHHHHHHHHHHHHHHHHhh-hHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77666665543211   12223334445555555544332 222233333 44789999999999999999999999999


Q ss_pred             HHHHhccchhhHH
Q 011308          442 LLEQLGPLILYTI  454 (489)
Q Consensus       442 l~~~~g~~~~~~~  454 (489)
                      +.+..++......
T Consensus       367 l~~~~~~~~~~~~  379 (406)
T PRK15402        367 AYLGGGNGLFNLF  379 (406)
T ss_pred             cccCCchHHHHHH
Confidence            8887775443333

>PRK12382 putative transporter; Provisional

Probab=100.00  E-value=2.3e-33  Score=267.12  Aligned_cols=362  Identities=17%  Similarity=0.141  Sum_probs=255.8

Q ss_pred             HHHHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG  131 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (489)
                      +..+.++.++..+..++..|.+|. +.+|+|.|.++.  |++.+.+.+++.++++++|+++||+||||++..+.+...++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~--g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMV--GIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHH--HHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            334444556666667777888886 578999988887  99999999999999999999999999999999998887776


Q ss_pred             HHHHh---h-----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 011308          132 ASMSA---I-----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI  203 (489)
Q Consensus       132 ~~~~~---~-----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~  203 (489)
                      .+...   +     .++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~  174 (392)
T PRK12382         95 GLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH  174 (392)
T ss_pred             HHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            54332   1     358899999999999999988898999999999999999999999999999999999999999888


Q ss_pred             cchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhc
Q 011308          204 LGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELIS  283 (489)
Q Consensus       204 ~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (489)
                      .+ ||+.+.+..+..++........||.++    +++                             +++    +.++..+
T Consensus       175 ~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----------------------------~~~----~~~~~~~  216 (392)
T PRK12382        175 FG-FAALALTTMVLPLLAWAFNGTVRKVPA----HAG-----------------------------ERP----SLWSVVG  216 (392)
T ss_pred             cC-hHHHHHHHHHHHHHHHHHHHhccCCCC----Ccc-----------------------------cCc----hHHHHHH
Confidence            88 998877655544333322222233211    000                             000    0111111


Q ss_pred             cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc-hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          284 PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS-GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                        ..+...+...+...    .......+.+.++++.+.+... .....+++.+++.++.|++.||+++|+.+..+..+..
T Consensus       217 --~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  290 (392)
T PRK12382        217 --LIWKPGLGLALQGV----GFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVET  290 (392)
T ss_pred             --HHHHhHHHHHHHHH----HHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHH
Confidence              00110111111111    1223334445555555554322 3444566778899999999999999998888877777


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      ++.+++.+..        +.+.......+.+.+.+. ..+.......|..|+++||++.|+.+...++|..++|.+.|.+
T Consensus       291 ~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l  361 (392)
T PRK12382        291 VGLLLLWLAP--------TAWVALAGAALTGAGCSL-IFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGML  361 (392)
T ss_pred             HHHHHHHHcc--------cHHHHHHHHHHHHHHHHh-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665544321        122233334444444432 2344445667888999999999999999999999999999999


Q ss_pred             HHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308          443 LEQLGPLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      .++.||...|.+.+++.+++.++.+..
T Consensus       362 ~~~~g~~~~~~~~~~~~~~~~~~~~~~  388 (392)
T PRK12382        362 ATSFGYPSVFLAGAISAVLGIIVTILS  388 (392)
T ss_pred             HHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999988888877766543

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.4e-35  Score=265.35  Aligned_cols=374  Identities=17%  Similarity=0.158  Sum_probs=276.5

Q ss_pred             CCcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhh
Q 011308           45 PWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLC  124 (489)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~  124 (489)
                      ..+..++.+.++++.+.++.++++.+...++.+++.+|++++..  |++.+.+.+.+.+++|+.|+++|||+||+++.+|
T Consensus        27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~--Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG  104 (493)
T KOG1330|consen   27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSEL--GLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVG  104 (493)
T ss_pred             ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhc--cchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeH
Confidence            34556778889999999999999999999999999999999888  9999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          125 ALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      .++|.++.++++++..||+++++|.+.|+|.+...|+++.+++|.+|.++|++++++++.+..+|..+|.+++..+.+..
T Consensus       105 ~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~  184 (493)
T KOG1330|consen  105 IFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT  184 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhc
Q 011308          205 GWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELIS  283 (489)
Q Consensus       205 ~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (489)
                      ++|||.|+..+++++++.++.++ .+|+++     +..++..+                 ..+..++......+.+.+.+
T Consensus       185 ~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~~~-----------------~~~~~~~~ts~~kDl~~l~~  242 (493)
T KOG1330|consen  185 FWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEVDG-----------------ENKMVKPFTSVWKDLKVLAK  242 (493)
T ss_pred             cceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccccc-----------------CCcCCCCccchHHHHHHHHc
Confidence            88999999999999998877655 555432     11111000                 00001122223344555666


Q ss_pred             cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCc----hhHHH
Q 011308          284 PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRR----VLLLG  356 (489)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~----~~~~~  356 (489)
                      ++.+....+......+...+...+.+.+.+......+.+...   ...+...++.+|.+.+|.++||+.++    ....+
T Consensus       243 ~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~  322 (493)
T KOG1330|consen  243 IKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRA  322 (493)
T ss_pred             cCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhH
Confidence            677777666766666666666667777777776666544443   56667788899999999999994321    11122


Q ss_pred             HHHHHH----HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH
Q 011308          357 SFLGMA----IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVIN  432 (489)
Q Consensus       357 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~  432 (489)
                      ..+..+    .+...+.+.+..   ...+.+ ..+.+++++............-+..|++|+++|.++.++...+..+.+
T Consensus       323 ~q~~~~~g~~~s~~~L~~~~~~---~~~s~~-~~~il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fg  398 (493)
T KOG1330|consen  323 SQLSAALGAPLSIPFLFLFPAF---TSSSMI-FGLILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFG  398 (493)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhh---hhHHHH-HHHHHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhc
Confidence            111111    111111111111   111112 222333333333333333444467899999999999999998877655


Q ss_pred             -HHHHHHHHHHHHHh
Q 011308          433 -FFVGLLFLRLLEQL  446 (489)
Q Consensus       433 -~~~~~~~g~l~~~~  446 (489)
                       +-+|.+.|.+.|+.
T Consensus       399 d~~~p~ivGilsd~l  413 (493)
T KOG1330|consen  399 DAASPYIVGILSDKL  413 (493)
T ss_pred             cCCCcceehhHHHHh
Confidence             55555999998874

>PRK10504 putative transporter; Provisional

Probab=100.00  E-value=4.9e-34  Score=278.41  Aligned_cols=381  Identities=18%  Similarity=0.177  Sum_probs=268.2

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (489)
                      .+..++++.++..++...+++.+|.+.+++|.+..+.  +++.+.+.++..++.+++|+++||+|||++++.+.++.+++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~   88 (471)
T PRK10504         11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHM--HMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLG   88 (471)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            3456667778888888888999999999999988777  89999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308          132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF  211 (489)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f  211 (489)
                      .++++++++++.++++|+++|++.+...+....++.|++|+++|+++.++.....++|..++|.+++.+.+..+ ||+.|
T Consensus        89 ~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~g-w~~~f  167 (471)
T PRK10504         89 SLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYAS-WHWIF  167 (471)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcc-HHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888 99999


Q ss_pred             HHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHH-------H--HhCCCCch-HH--HH-----------HHhhh
Q 011308          212 WVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELE-------R--LFGGLHVK-YS--MA-----------ELSKS  267 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~-~~--~~-----------~~~~~  267 (489)
                      ++......+..+.... .|+.+.   ++.|.+.......       .  ..+..... ..  ..           ....+
T Consensus       168 ~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (471)
T PRK10504        168 LINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLH  244 (471)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            9987766655544433 444331   1112221111000       0  00110000 00  00           00001


Q ss_pred             hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHH
Q 011308          268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMI  343 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~  343 (489)
                      ++..+++..+ .++++++.++..+...++....    ......+.|.+++. .+.+...   ......++.+++.++.++
T Consensus       245 ~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  319 (471)
T PRK10504        245 ARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIG----SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQ  319 (471)
T ss_pred             HhcCCCCccC-HHHhcccchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111122 3477888877666555554443    23334445555543 4554433   444455666777788999


Q ss_pred             HHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308          344 LMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV  423 (489)
Q Consensus       344 l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  423 (489)
                      +.||+++|+.+..+..+..+...++.+...     ..+.+.......+.+.+.+.... ....+..+..|++.++.++|+
T Consensus       320 l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~  393 (471)
T PRK10504        320 VVNRFGYRRVLVATTLGLALVSLLFMLVAL-----LGWYYLLPFVLFLQGMVNSTRFS-SMNTLTLKDLPDNLASSGNSL  393 (471)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCHHhccchHHH
Confidence            999999999988887777666555443221     11122222223333344433333 344567788899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308          424 CMAVHWVINFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       424 ~~~~~~~g~~~~~~~~g~l~~~~g~~  449 (489)
                      .++...+|..+|+.+.|.+.+..|+.
T Consensus       394 ~~~~~~~g~~ig~~i~g~ll~~~g~~  419 (471)
T PRK10504        394 LSMIMQLSMSIGVTIAGLLLGLFGQQ  419 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999998887653

>PRK03633 putative MFS family transporter protein; Provisional

Probab=100.00  E-value=6.7e-33  Score=262.46  Aligned_cols=359  Identities=14%  Similarity=0.164  Sum_probs=261.8

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (489)
                      .+..+.++.++........++.+|.+.+++|.+.++.  |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~   84 (381)
T PRK03633          7 PVLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQV--GVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAG   84 (381)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566667888888999999999999999999987777  99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308          132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF  211 (489)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f  211 (489)
                      .+++++++|++.++++|+++|++.+...+.....+.+..++++|+++++.++.+.++|..+|+.+++.+.+... |...+
T Consensus        85 ~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~  163 (381)
T PRK03633         85 CAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM-SVLPW  163 (381)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-chHHH
Confidence            99999999999999999999999999888888888899999999999999999999999999999999877543 23322


Q ss_pred             HHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccch
Q 011308          212 WVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVV  290 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      . .+..........+ ..+|+++                                +  +   ++..+.++.++++.++..
T Consensus       164 ~-~~~~~~~~~~~~~~~~~~~~~--------------------------------~--~---~~~~~~~~~~~~~~~~~~  205 (381)
T PRK03633        164 V-TGLVLAAILPLLFTRILNQQA--------------------------------E--N---HDSTSIWPMLKLRQARLG  205 (381)
T ss_pred             H-HHHHHHHHHHHHHhcccCCCC--------------------------------C--C---CCCCCHHHHHHhcchHHH
Confidence            2 2222211111111 1121100                                0  0   001123445666665533


Q ss_pred             hhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 011308          291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGV  367 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (489)
                      ....+....    .......++|.+.++.+.+...   ......++.+++++..+++.||+++|+.+..+.....++.+.
T Consensus       206 ~~~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~  281 (381)
T PRK03633        206 VNGCIISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIA  281 (381)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            322222222    1223334566667666766544   344556778899999999999999999887777666665443


Q ss_pred             HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      ..  ..         ........+++.+. ....|.....+.|..|+++++...+..+...++|..++|.+.|.+.|+.|
T Consensus       282 ~~--~~---------~~~~~~~~l~g~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g  349 (381)
T PRK03633        282 ML--SQ---------AAMAPALFILGAAG-FTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS  349 (381)
T ss_pred             Hh--hh---------HHHHHHHHHHHHHH-HhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            32  10         00112222333222 23346666677888888888888899999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHhh
Q 011308          448 PLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~  467 (489)
                      +...|.+.+++.++..+..+
T Consensus       350 ~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        350 DNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             ccHHHHHHHHHHHHHHHHHH
Confidence            99899888888776655544

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=100.00  E-value=3.9e-34  Score=275.92  Aligned_cols=393  Identities=15%  Similarity=0.096  Sum_probs=263.4

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      .++|.++..+.+...........++..+|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||++++.+.+
T Consensus        15 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~s~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~   92 (455)
T TIGR00892        15 GWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIFQATYSET--AWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGL   92 (455)
T ss_pred             CcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHhCcchhHH--HHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHH
Confidence            345666666666665555555667888999999999988888  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHH-HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          127 PMIIGASMSAITKNLWGMLL-GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      +.++++++++++++++.+++ .|+++|++.+...+....++.++++ ++|+++.++.+.+..+|..++|.+++.+.+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~g  171 (455)
T TIGR00892        93 LASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFG  171 (455)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhC
Confidence            99999999999999998875 5799999998877777888899995 789999999999999999999999999998888


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308          206 WWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR  285 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                       ||+.|++.+++.++..+..+++.+.++..  +..+.+..+   .. ......   ++.......++..+....++++++
T Consensus       172 -wr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~~---~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  241 (455)
T TIGR00892       172 -WRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKSKE---GL-PPDGST---KKLSKKSTAEKINRFLDFSLFTHR  241 (455)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccccc---cC-CCCCcc---ccccccchhhhhhhhcchHHhcCc
Confidence             99999999887776555444433221100  000000000   00 000000   000000000000011112466777


Q ss_pred             cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhh--CCchhHHHHH--
Q 011308          286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKL--GRRVLLLGSF--  358 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~--  358 (489)
                      .++......++..+.    ......+++.+.++.+.+...   ...+.+++.++++++.+++.||.  ++|+......  
T Consensus       242 ~~~~~~~~~~l~~~~----~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  317 (455)
T TIGR00892       242 GFLVYLSGNVIMFLG----FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFAL  317 (455)
T ss_pred             hHHHHHHHHHHHHHH----ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHH
Confidence            776555544444332    223334555566666666554   44456677788888999999974  3333333222  


Q ss_pred             HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308          359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  438 (489)
                      +..+++.++....        .+.+..+....+.+.+.+. ..+.....+.|.+|++++++++|+++...++|.+++|.+
T Consensus       318 ~~~~l~~ll~~~~--------~~~~~~~i~~~~~G~~~g~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i  388 (455)
T TIGR00892       318 LFNGLTHLLCALA--------GDYTGLVIYCIFFGLSFGS-VGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPL  388 (455)
T ss_pred             HHHHHHHHHHHHh--------chHHHHHHHHHHHHHHhch-HHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccc
Confidence            2222222222111        1223333344444444432 234555677888999999999999999999999999999


Q ss_pred             HHHHHHHhc-cchhhHHHHHHHHHHHHH
Q 011308          439 FLRLLEQLG-PLILYTIFGSFCFLAVIY  465 (489)
Q Consensus       439 ~g~l~~~~g-~~~~~~~~~~~~~~~~~~  465 (489)
                      .|.+.+..| |...|.+.+++.+++.+.
T Consensus       389 ~G~l~~~~g~~~~~f~~~~~~~li~~~~  416 (455)
T TIGR00892       389 AGRLVDATKNYKYIFYASGSIVVSAGLF  416 (455)
T ss_pred             eeeeehhcCCcchHHHHhhHHHHHHHHH
Confidence            999999875 888888877766665543

>PRK03699 putative transporter; Provisional

Probab=100.00  E-value=8.9e-34  Score=269.54  Aligned_cols=368  Identities=12%  Similarity=0.069  Sum_probs=263.2

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      +++.....++..++.+......++.+|.+.+++|++.++.  +++.+.+.+++.+++++.|++.||+|||+++..+.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~s~~~~--g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~   82 (394)
T PRK03699          5 RIKLTWISFLSYALTGALVIVTGMVMGPIAEYFNLPVSSM--SNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALM   82 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4455667777888888888889999999999999988877  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc-ccchH
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE-ILGWW  207 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-~~~~W  207 (489)
                      +++.++++++++++.++++|+++|++.+...+....++.|++|+++|+++++..+....+|..++|.+.+.+.. ..+ |
T Consensus        83 ~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~g-w  161 (394)
T PRK03699         83 ILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIE-W  161 (394)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-H
Confidence            99999999999999999999999999998888899999999999999999999988889999999988877654 456 9


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccc
Q 011308          208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNF  287 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      |+.|.+.+++.++..+..++ .+.|+.  +++++                        +  ++++.    .++.+ ++.+
T Consensus       162 ~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~------------------------~--~~~~~----~~~~~-~~~~  207 (394)
T PRK03699        162 YWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP------------------------K--ADKPV----AKEKW-GIGV  207 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc------------------------c--ccCcc----ccccC-ChHH
Confidence            99999888777665544332 222210  00000                        0  00000    00001 1222


Q ss_pred             cchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308          288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (489)
                      +...+..++...    ....+..+.|.++++ .+.+...   ......++..+++++.++++||+++|+.+.....+..+
T Consensus       208 ~~~~~~~~~~~~----~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~  283 (394)
T PRK03699        208 LFLAIAALLYIL----AQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALV  283 (394)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Confidence            222222222222    233445667777744 5766544   44556678899999999999999999887766655554


Q ss_pred             HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      ...++....        +.........+.+.+.+ +..+....+..|..| +.+++..|......++|..++|.+.|.+.
T Consensus       284 ~~~~~~~~~--------~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~  353 (394)
T PRK03699        284 LMYLFVNTD--------DPSHLLYAILGLGFFSS-AIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIV  353 (394)
T ss_pred             HHHHHHHcC--------CchHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            443332211        11122222333333222 223344445566666 44677889999999999999999999999


Q ss_pred             HHhccchhhHHHHHHHHHHHHHhh
Q 011308          444 EQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       444 ~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      +..|+...+++.+++++++.+...
T Consensus       354 ~~~g~~~~~~~~~~~~~~~~~~~~  377 (394)
T PRK03699        354 AHFGLQAALLTANGLYAVVFVMCI  377 (394)
T ss_pred             HHhCchhhhhhhHHHHHHHHHHHH
Confidence            999999888888887777755443

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=100.00  E-value=6.5e-34  Score=275.74  Aligned_cols=380  Identities=14%  Similarity=0.090  Sum_probs=244.7

Q ss_pred             hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      ++.+...+...+..........+.+|.+.+|+|++.++.  +++.+.+.+++.+++++.|+++||+|||+++..+.++++
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~  112 (476)
T PLN00028         35 MRAFHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDI--GNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTA  112 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            344445555556666666667888999999999988877  899999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc----c---
Q 011308          130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK----E---  202 (489)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~----~---  202 (489)
                      ++.++++++++++.++++|+++|++.+... ....++.|++|+++|++++++.+...++|..+++.+.+.+.    +   
T Consensus       113 ~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~  191 (476)
T PLN00028        113 PAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGA  191 (476)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999987654 45678899999999999999998777777776665554332    1   


Q ss_pred             --ccchHHHHHHHhHHHHHHHHHHhhcccC-ChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308          203 --ILGWWRICFWVATIPAAFLALFMEFCAE-SPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS  279 (489)
Q Consensus       203 --~~~~Wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (489)
                        ..+ ||+.|++.+++.++..+..+++++ .|+     ++.++.++                   +.+.++.+....++
T Consensus       192 ~~~~g-Wr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~-------------------~~~~~~~~~~~~~~  246 (476)
T PLN00028        192 PSFTA-WRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK-------------------SGTMPKDSFSKVLR  246 (476)
T ss_pred             cchhh-hHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh-------------------cCccccccHHHHHH
Confidence              235 999999999888777666555443 332     11000000                   00000111123455


Q ss_pred             hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh--
Q 011308          280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL--  353 (489)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~--  353 (489)
                      +.++++..|...+..+.....    ......+.|.++.+ .|.+...   ...+.+++.++++++.|+++||++||+.  
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~  322 (476)
T PLN00028        247 YGVTNYRTWILALTYGYSFGV----ELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMR  322 (476)
T ss_pred             HHHcCchhHHHHHHHHHHHHH----HHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcc
Confidence            667777766554443332221    12233344555433 4666544   5556678889999999999999986521  


Q ss_pred             --HHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 011308          354 --LLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI  431 (489)
Q Consensus       354 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  431 (489)
                        .........+..+.......     ..+.......+++++.+...+. +..+.+..+..| +.+|++.|+.+...++|
T Consensus       323 ~r~~~~~~~~~l~~i~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg  395 (476)
T PLN00028        323 GRLWALWIVQTLGGVFCIWLGR-----ANSLGAAIVVMILFSIFVQAAC-GATFGIVPFVSR-RSLGVISGLTGAGGNVG  395 (476)
T ss_pred             hhHHHHHHHHHHHHHHHHHhcc-----cchHHHHHHHHHHHHHHHHHhh-hhhcccCcccCh-hhchhhhhhhhccccHH
Confidence              11111111111111111111     1112222223333333332222 233445666655 68999999998887777


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308          432 NFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       432 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      +.++|.+.+ ..+..+|...|.+.+++.+++.++.++.
T Consensus       396 ~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~  432 (476)
T PLN00028        396 AVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFI  432 (476)
T ss_pred             HHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHhe
Confidence            777776654 1122357788888888877777666544

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=100.00  E-value=8.6e-33  Score=272.35  Aligned_cols=427  Identities=21%  Similarity=0.199  Sum_probs=297.9

Q ss_pred             CCCCCCCCcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 011308           39 KDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR  118 (489)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr  118 (489)
                      .++.+++.++++......+.............++..+  .+.+..+....  .+..+++++|..+|++++|+++||+|||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~c~~~~~~--~~~~s~~~~G~~vG~~i~g~lsD~~GRk  148 (521)
T KOG0255|consen   73 ANPLNWPSWKKWLLVIVICLDGWVYDYGSSVYSIVSE--WNLVCDSSTLV--ALGQSLFFLGVLVGSLIFGPLSDRFGRK  148 (521)
T ss_pred             CCccccccccccccccccccceeEecCCCCcccccch--hceeeCcHhHH--HHHHHHHHHHHHHHHhhheehHhhcccH
Confidence            3344444444443333333333333333333333333  34444444444  7899999999999999999999999999


Q ss_pred             hHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 011308          119 RAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL  198 (489)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~  198 (489)
                      ++++.++++..++.++.++++|++.+++.|+++|++.++.......++.|++++++|+.+..+ ......+..+++..++
T Consensus       149 ~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a  227 (521)
T KOG0255|consen  149 PVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAA  227 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999 6666667777777777


Q ss_pred             ccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCC----CchHHHHHH-h-h-hhhcc
Q 011308          199 PAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGL----HVKYSMAEL-S-K-SERGD  271 (489)
Q Consensus       199 ~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~-~-~~~~~  271 (489)
                      ++..  + ||+.+++..++.++.++.+++.||+|+|+..+++.+++.+.+++..+.+    ......... . + .....
T Consensus       228 ~~~~--~-Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~  304 (521)
T KOG0255|consen  228 YITR--D-WRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLF  304 (521)
T ss_pred             HHHh--h-HHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhc
Confidence            7776  4 9999999999998887776667899999999999999998888875432    111111111 1 1 11111


Q ss_pred             chhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc
Q 011308          272 EADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR  351 (489)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~  351 (489)
                      .++...+.++++.+.++...+...+.++    .+....+-++......|.+........+.....+....+...|+.|||
T Consensus       305 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~----~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~  380 (521)
T KOG0255|consen  305 TEPKISFLDLFRTPRLRYRTLYLLFIWF----VFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRR  380 (521)
T ss_pred             cCCCCchhhhhcCHHHHHHHHHHHHHHH----HHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcH
Confidence            1223457777777754444333333332    122222223333444555555566666777888888889999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 011308          352 VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI  431 (489)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  431 (489)
                      .....+..+..++++...+.......     +.......+..++.+.+.. ..+.+..|++|+..|..+.+..+....++
T Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~~  454 (521)
T KOG0255|consen  381 PPLFLSLFLAGIGLLLFGWLPDDLGG-----WLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARLG  454 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccchh-----HHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888877543210     1122222222222333333 33668999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHh
Q 011308          432 NFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMA  484 (489)
Q Consensus       432 ~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  484 (489)
                      ++++|.+.-.... ......+..++..+.+..++...+.||++++.+.+..++
T Consensus       455 ~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~  506 (521)
T KOG0255|consen  455 SILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLD  506 (521)
T ss_pred             HHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHH
Confidence            9999998644333 333333444566777777777678999998887555443

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.3e-35  Score=260.25  Aligned_cols=432  Identities=22%  Similarity=0.285  Sum_probs=308.0

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcc-ccc------ccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDL-GFS------GSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR  118 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~------~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr  118 (489)
                      .++....+.+..++.+.+.++...++.+.|.+...+ |-+      ++.. .+.+..+..+|..+||++.|+++||+|||
T Consensus        36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~g~~ps~i-~~~Vn~~A~vGti~GQl~FG~lgD~~GRK  114 (538)
T KOG0252|consen   36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESGGHYPSGV-LALVNAAALVGTIFGQLFFGWLGDKFGRK  114 (538)
T ss_pred             hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCCCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHhhhcch
Confidence            456677788888999999999999999988776654 222      1222 37889999999999999999999999999


Q ss_pred             hHhhhhhHHHHHHHHHHhhhh-------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHH
Q 011308          119 RAFQLCALPMIIGASMSAITK-------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL  191 (489)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~  191 (489)
                      +++...++++.+++++++++.       -.+++...|++.|+|.|+-+|...+..+|...+++||...+...+..++|..
T Consensus       115 ~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gil  194 (538)
T KOG0252|consen  115 KVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGIL  194 (538)
T ss_pred             hhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHh
Confidence            999999999999999888753       2567888999999999999999999999999999999988877777777776


Q ss_pred             HHHHhhccccc----cc----------chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCCh-HHHHHHHHHHhCCCC
Q 011308          192 VALFVGLPAKE----IL----------GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRG-AEAEAELERLFGGLH  256 (489)
Q Consensus       192 i~~~~~~~l~~----~~----------~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~  256 (489)
                      .|.+++..+..    ..          +-||..|.+.+++.++.....+..||++++.....++ +.+.   .+..+...
T Consensus       195 aG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~  271 (538)
T KOG0252|consen  195 AGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLS  271 (538)
T ss_pred             hccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hccccccc
Confidence            66665543321    11          1299999999999988888888899999876333322 1111   11111111


Q ss_pred             chHHHHHHhhhh-hccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc--h-------
Q 011308          257 VKYSMAELSKSE-RGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS--G-------  326 (489)
Q Consensus       257 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------  326 (489)
                      ...+.++..+.. ...++....+...+..+. -..++.....++..-..++....+...+++..+..+..  .       
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~h-g~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA  350 (538)
T KOG0252|consen  272 VDIEAESTAESDVPPPSNSFGLFSRLFLRWH-GKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVA  350 (538)
T ss_pred             cccchhhccccCCCCcccccchHHHHHHHHH-HHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHH
Confidence            111111110000 111111112333333332 23344555555555555666777788888876665544  1       


Q ss_pred             --hH-HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcc
Q 011308          327 --NI-CVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPV  403 (489)
Q Consensus       327 --~~-~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (489)
                        .. +...+.++|..+...++|++|||+..+.+++++.+..+.++......   . +....++...+..++..++....
T Consensus       351 ~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~---~-~~~Gf~v~y~l~~ff~NFGPn~t  426 (538)
T KOG0252|consen  351 EGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL---E-NTIGFVVLYSLTFFFGNFGPNAT  426 (538)
T ss_pred             HHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc---c-ccCceeehHHHHHHHHhcCCCce
Confidence              11 11223334666677789999999999999999999888877765531   1 22223333444455555677777


Q ss_pred             hhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308          404 PSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE-----QLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTL  478 (489)
Q Consensus       404 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (489)
                      ...+.+|.+|.+.|+++.|+....+..|++++...+.++.+     ..|...++++++++++++.++.+ +.||++++++
T Consensus       427 tfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~-l~pEtk~~~l  505 (538)
T KOG0252|consen  427 TFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTL-LIPETKGKSL  505 (538)
T ss_pred             eEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeE-EeecccccCH
Confidence            78889999999999999999999999999999999999998     77889999999999998877665 5679999999


Q ss_pred             HHHHHhhCC
Q 011308          479 QEIEMALLP  487 (489)
Q Consensus       479 ~~~~~~~~~  487 (489)
                      +|++++.+.
T Consensus       506 eei~~e~~~  514 (538)
T KOG0252|consen  506 EEISNEEES  514 (538)
T ss_pred             HHhcChhhc
Confidence            998765443

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=100.00  E-value=7.9e-34  Score=278.61  Aligned_cols=380  Identities=17%  Similarity=0.151  Sum_probs=273.4

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (489)
                      .+..++++.++..++....++.+|.+.+++|.+.++.  +++.+.+.++..++.++.|+++||+|||+++..+.++..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   80 (485)
T TIGR00711         3 LTIVLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQV--QWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLG   80 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhh--hHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            4566777888889999999999999999999988877  99999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308          132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF  211 (489)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f  211 (489)
                      ++++++++|++.++++|+++|++.+...+...+++.|++|+++|+++++++..+..+|..++|.+++++.+..+ ||+.|
T Consensus        81 ~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-w~~~f  159 (485)
T TIGR00711        81 SLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH-WRWIF  159 (485)
T ss_pred             HHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC-ceehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888 99999


Q ss_pred             HHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHH--------H-H-HhCCCCc---hHHHH-----------HHhh
Q 011308          212 WVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAEL--------E-R-LFGGLHV---KYSMA-----------ELSK  266 (489)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~--------~-~-~~~~~~~---~~~~~-----------~~~~  266 (489)
                      ++.+++.++..+.. ++.||+++.  ++++.+......        . . ..+....   .....           ....
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (485)
T TIGR00711       160 LINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVV  237 (485)
T ss_pred             hhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence            99887776665543 345664321  111111111000        0 0 0011000   00000           0000


Q ss_pred             hhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHH
Q 011308          267 SERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAM  342 (489)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g  342 (489)
                      .+.. ++++....++++++.++...+..++..+..    ....++.|.++++ .+.+...   ......++.+++.++.|
T Consensus       238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g  312 (485)
T TIGR00711       238 WELT-DDNPLVDLRLFKYRNFTIGCVYMSLLGLGL----YGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAG  312 (485)
T ss_pred             HHHc-CCCCccCHHHHcCCChHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0111 111122235677777766655555444433    3333455555544 4555543   45556778889999999


Q ss_pred             HHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHH
Q 011308          343 ILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMA  422 (489)
Q Consensus       343 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g  422 (489)
                      ++.||++||+.+..+..+..++...+.+...    ...+.+.......+.+.+.+....+... ...+..|+++++++.|
T Consensus       313 ~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~g~~~~~~~~~~-~~~~~~~~~~~g~~~~  387 (485)
T TIGR00711       313 RMGDKIDPRKLVTIGLILYAVGFYWRAFTFT----PDTPFLAIALPQFIRGFGMGCFFMPLTT-IALSGLPPHKIARGSS  387 (485)
T ss_pred             HHHhhcCcHHHHHHHHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCHHHHhHHHH
Confidence            9999999999988887777766655542211    1122233333444555555443333433 4556779999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 011308          423 VCMAVHWVINFFVGLLFLRLLEQL  446 (489)
Q Consensus       423 ~~~~~~~~g~~~~~~~~g~l~~~~  446 (489)
                      +.+...++|+.+|+.+.+.+.++.
T Consensus       388 ~~~~~~~~g~~ig~~i~g~~~~~~  411 (485)
T TIGR00711       388 LSNFTRQLGGSIGTALITTILTNR  411 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998753

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=100.00  E-value=2.1e-33  Score=270.54  Aligned_cols=402  Identities=14%  Similarity=0.081  Sum_probs=267.4

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ++..+....+.....+.++..+....|.+++ +|.+.++.  |++.+++.++..+++++.|+++||+|||+++..+.++.
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-~g~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~  101 (438)
T TIGR00712        25 RWQVFLGIFFGYAAYYLVRKNFALAMPYLVE-QGFSKGEL--GFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILS  101 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHhhhHHHHH-cCCCHhHh--HHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHH
Confidence            4555666666777777777777777887776 58888877  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc-c
Q 011308          129 IIGASMSAIT----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE-I  203 (489)
Q Consensus       129 ~i~~~~~~~~----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-~  203 (489)
                      +++.++.++.    ++++.+.+.|++.|++.+...+.....+.|++|+++|++++++++.+..+|..+++.+.+...+ .
T Consensus       102 ~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~  181 (438)
T TIGR00712       102 AAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF  181 (438)
T ss_pred             HHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh
Confidence            9998887764    4677888999999999999989889999999999999999999999999999998877665443 4


Q ss_pred             cchHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308          204 LGWWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI  282 (489)
Q Consensus       204 ~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (489)
                      .+ ||+.|++.++..++..+. .+++||+|+....+ +.++.++       +.. . ...  ++.+.+.+.+....+.++
T Consensus       182 ~~-w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~~~-~-~~~--~~~~~~~~~~~~~~~~~~  248 (438)
T TIGR00712       182 ND-WHAALYFPAICAIIVALFAFAMMRDTPQSCGLP-PIEEYRN-------DYP-D-DYN--EKAEQELTAKEIFMQYVL  248 (438)
T ss_pred             hh-hHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCC-Cchhccc-------ccc-c-ccc--cccccccchHHHHHHHHc
Confidence            56 999999988887765544 45578876531100 0000000       000 0 000  000000001111123466


Q ss_pred             ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 011308          283 SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF  358 (489)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  358 (489)
                      +++.++...+..++....    ......+.|.++++ .|.+...   ...+..+.++++.++.|++.||+++++....+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~----~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~  324 (438)
T TIGR00712       249 PNKLLWYIAIANVFVYLL----RYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGV  324 (438)
T ss_pred             cCchHHHHHHHHHHHHHH----HHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHH
Confidence            777776655544443332    23344566666665 4655543   455667788999999999999996443222232


Q ss_pred             HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHH-HHHHH
Q 011308          359 LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVIN-FFVGL  437 (489)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~~~~~  437 (489)
                      ....+...........   ...+.+.........+.+. .+..........|.+|++.|+++.|+.+...++++ .++|.
T Consensus       325 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~  400 (438)
T TIGR00712       325 FFMTLVTIAVIVYWMN---PAGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASA  400 (438)
T ss_pred             HHHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcch
Confidence            2222111111111100   0111121222222222211 11111222356788999999999999999988875 68999


Q ss_pred             HHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308          438 LFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       438 ~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (489)
                      +.|.+.|+.|+...+.+.+++++++.+..+...+|.|
T Consensus       401 l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (438)
T TIGR00712       401 IVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK  437 (438)
T ss_pred             hHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999888888888777777777665

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00895 2A0115 benzoate transport

Probab=100.00  E-value=7.4e-33  Score=264.92  Aligned_cols=381  Identities=21%  Similarity=0.262  Sum_probs=264.7

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +++++.+....+..+..+++.....+..|.+.+++|.+..+.  |++.+.+.++..+++++.|+++||+|||+++..+.+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~   90 (398)
T TIGR00895        13 RYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQL--GFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSIL   90 (398)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHH
Confidence            345566666667777777777788889999999999987777  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          127 PMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       127 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      +.+++.++..++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++.+++.+.+..+ 
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g-  169 (398)
T TIGR00895        91 LFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG-  169 (398)
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999998888 


Q ss_pred             HHHHHHHhHHHHHHHH-HHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccc
Q 011308          207 WRICFWVATIPAAFLA-LFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPR  285 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~-~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (489)
                      ||+.|++.++..++.. +...++||++++..++ +.++..+..++.......+.+. +..+.+.+.+..+...+.+++++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  247 (398)
T TIGR00895       170 WRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS-ALPEQKATQGTKRSVFKALFQGK  247 (398)
T ss_pred             ceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc-cccccccccchhhHHHHHHhcch
Confidence            9999999865555443 3455688887655444 3333322222221111100000 00000000111111222233333


Q ss_pred             cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          286 NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      ..+........ .+...........+.|.+.++.+.+...   ......++.+++.++.+++.||+++|+....... ..
T Consensus       248 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~  325 (398)
T TIGR00895       248 TARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLLL-GA  325 (398)
T ss_pred             hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHH-HH
Confidence            22222222111 1222223444555667666777766544   4556678889999999999999998844433333 33


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      +...++....       .+........++.+.+.+.. .+...+++.|.+|++.|+++.|+.+...++|..++|.+.|.+
T Consensus       326 ~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       326 VFAVLVGSTL-------FSPTLLLLLGAIAGFFVNGG-QSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHh-------hCHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            3222222211       11222333444444444433 345667899999999999999999999999999999999875

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=100.00  E-value=1.7e-32  Score=263.06  Aligned_cols=372  Identities=16%  Similarity=0.127  Sum_probs=265.2

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccch---HHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTM---AEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      ...++++.++..+......+.+|.+.+++|.+..+.   ..|++.+++.++..++++++|+++||+|||+++..+.++.+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~   95 (408)
T PRK09874         16 LTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMG   95 (408)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHH
Confidence            345556667777777788899999999999886553   24889999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                      ++.++..++++++.+++.|++.|++.+ ..+....++.|++|+++|++++++...+..+|..+++.+++.+.+..+ ||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~  173 (408)
T PRK09874         96 IVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYG-LRP  173 (408)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHH
Confidence            999999999999999999999999855 567778889999999999999999999999999999999999988888 999


Q ss_pred             HHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308          210 CFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .|++.++..++..+.. ++++|+++.   +++ ++                            +.+..+..+.++++.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~----------------------------~~~~~~~~~~~~~~~~~  221 (408)
T PRK09874        174 VFFITASVLFLCFLVTLFCIRENFQP---VSK-KE----------------------------MLHMREVVTSLKNPKLV  221 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCccc---ccc-hh----------------------------hhHHHHHHHhCcCCchH
Confidence            9999888776665544 335554320   000 00                            00001122234445443


Q ss_pred             chhhh-HHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc-------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308          289 VVFIG-STLFALQQLSGINAVFYFSSTVFKNAGVPSDS-------GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG  360 (489)
Q Consensus       289 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (489)
                      ..... ......    .......+.+.+..+.+.+...       .....+++.+++.+..|++.||++||+.+..+...
T Consensus       222 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~  297 (408)
T PRK09874        222 LSLFVTTLIIQV----ATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIF  297 (408)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHH
Confidence            32222 111111    1122222333333332222111       23344567778888899999999999988877776


Q ss_pred             HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFL  440 (489)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g  440 (489)
                      ..++.+......        +.+.......+.+.+.+. ..+.......+..|++++|+.+++.+...++|..++|.+.|
T Consensus       298 ~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G  368 (408)
T PRK09874        298 SVLLLIPMSFVQ--------TPLQLGILRFLLGAADGA-LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGA  368 (408)
T ss_pred             HHHHHHHHHHhc--------cHHHHHHHHHHHHhhhHh-hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHH
Confidence            655554433321        112233333344444432 23444556677788889999999999999999999999999


Q ss_pred             HHHHHhccchhhHHHHHHHHHHHHHhhhccc
Q 011308          441 RLLEQLGPLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       441 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      .+.+..|+...|.+.+++.+++.++.++..+
T Consensus       369 ~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~  399 (408)
T PRK09874        369 AISANYGFRAVFLVTAGVVLFNAVYSWNSLR  399 (408)
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888888776655433

>TIGR00897 2A0118 polyol permease family

Probab=100.00  E-value=8e-32  Score=256.69  Aligned_cols=373  Identities=14%  Similarity=0.056  Sum_probs=254.5

Q ss_pred             HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (489)
                      ...++.++.........+.++.+.+|+|.+.++.  |++.+.+.+++.+++++.|+++||+||||++..+.+++++++++
T Consensus        17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~   94 (402)
T TIGR00897        17 WGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQS--ASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAA   94 (402)
T ss_pred             HHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHh--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            3344444444444445556677778999988877  99999999999999999999999999999999999999988776


Q ss_pred             Hh---h-hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHH-HHHHHhhcccccccchHHH
Q 011308          135 SA---I-TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGI-LVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       135 ~~---~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~-~i~~~~~~~l~~~~~~Wr~  209 (489)
                      +.   . .++++.+++.|+++|++.+...+.....+.+++|+++|++++++.+.+.++|. .+++.+++.+.+..+ |+.
T Consensus        95 ~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g-~~~  173 (402)
T TIGR00897        95 FIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFG-EMN  173 (402)
T ss_pred             HHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-hHH
Confidence            53   3 35788889999999999888888888889999999999999999999999997 589999988888777 666


Q ss_pred             HHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308          210 CFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .++.......+..+. .++.+|.++.  ++.+++                          ++.++....+++++++|.++
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~  225 (402)
T TIGR00897       174 TLWSALAFVLTGGVIALFSNKDIFTP--QHMQTR--------------------------EKFSELGKAATILFTNPNVL  225 (402)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCc--ccccCC--------------------------cchhhHHHHHHHHHcChhHH
Confidence            555444333332222 2233433210  000000                          00001112345677778776


Q ss_pred             chhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHH-HHHHHHHHH
Q 011308          289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLL-GSFLGMAIA  364 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~-~~~~~~~~~  364 (489)
                      ...+..++...    .......+.|.+.++.|.+...   ......++..++.+..|+++||++||+... .+.+...++
T Consensus       226 ~~~~~~~~~~~----~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~  301 (402)
T TIGR00897       226 LGGMVRIINTI----GLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIF  301 (402)
T ss_pred             HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence            55444433332    3344556677777777776655   334556788999999999999999887653 233333333


Q ss_pred             HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      ...+.......   ..+.+.......+.+.+.+. ..+.. ....|..| ++||++.|+.+...+++..++|.+.|.+.+
T Consensus       302 ~~~l~~~~~~~---~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~  375 (402)
T TIGR00897       302 TLALYYIPQHF---GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG  375 (402)
T ss_pred             HHHHHHHHHcc---CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22322222110   11222233334444444332 23333 35567655 679999999999999999999999999999


Q ss_pred             HhccchhhHHHHHHHHHHHHHhhh
Q 011308          445 QLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ..|+...+++.+++.+++.++..+
T Consensus       376 ~~g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       376 FFGAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998888777666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=100.00  E-value=1.2e-32  Score=262.07  Aligned_cols=348  Identities=19%  Similarity=0.173  Sum_probs=252.7

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      ..+....+....+.....+.+|.+.+++|.++++.  |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~   85 (385)
T TIGR00710         8 LLLGCLSILGPLGIDMYLPAFPEIAADLSTPASIV--QMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL   85 (385)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence            33334445566777788899999999999988877  9999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                      +.+++++++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.+.+..+ ||+.|++
T Consensus        86 ~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~-~~~~~~~  164 (385)
T TIGR00710        86 GLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS-WHAIFAF  164 (385)
T ss_pred             HHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988888 9999999


Q ss_pred             hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++..++..+.. ++.||+++.   +++                            ++.++....+++.++++.++...+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~---~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~  213 (385)
T TIGR00710       165 LSLAGILLSALIFFILPETLPY---EAR----------------------------IQISTYFETFLLLLKSKMFWGYAL  213 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCC---ccc----------------------------CCHHHHHHHHHHHHcCchhHHHHH
Confidence            887776665544 345665421   000                            000111223456677777665544


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ  368 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (489)
                      ........    ......+.|.++. ..+.+...   ......++.+++.++.+++.||+++|+.+..+..+..++.+++
T Consensus       214 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~  289 (385)
T TIGR00710       214 IYGASFGG----FFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLL  289 (385)
T ss_pred             HHHHHHHH----HHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            43333322    2223333444443 45665544   4455667888999999999999999998887777666665555


Q ss_pred             HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      .......   ............+.+.+.+.. .+.......|..| +.++++.++.+...+.++.+.+.+.+.+.+
T Consensus       290 ~~~~~~~---~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~  360 (385)
T TIGR00710       290 EITAILG---LGSWAMIIGPMMFVGIGNSMI-SSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHG  360 (385)
T ss_pred             HHHHHhc---cchHHHHHHHHHHHHHHHHHH-HHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4432211   111122222233333433332 2344456677777 569999999999988777777777764433

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=100.00  E-value=4.6e-33  Score=263.10  Aligned_cols=351  Identities=15%  Similarity=0.117  Sum_probs=261.4

Q ss_pred             HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308           56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS  135 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (489)
                      +..+.++..+......+.+|.+.++++.+..+.  |++.+++.++..++++++|+++||+|||+++..+.++.+++.++.
T Consensus         4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~   81 (365)
T TIGR00900         4 LFAAQLISLIGTAITQVALPLYVLAGTGSASVL--SLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVL   81 (365)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHH--HHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHH
Confidence            345566677777778888999999988877776  999999999999999999999999999999999999999999888


Q ss_pred             hhhh-----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHH
Q 011308          136 AITK-----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRIC  210 (489)
Q Consensus       136 ~~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~  210 (489)
                      ++++     +++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g-~~~~  160 (365)
T TIGR00900        82 PFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLG-IKWA  160 (365)
T ss_pred             HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHH
Confidence            8887     999999999999999999999999999999999999999999999999999999999999998888 9999


Q ss_pred             HHHhHHHHHHHHHHhhcc--cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308          211 FWVATIPAAFLALFMEFC--AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG  288 (489)
Q Consensus       211 f~~~~~~~~~~~~~~~~~--~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      |++.++..++..+..+.+  ||+++    +++.+..+                       +..++....++++++++.++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~  213 (365)
T TIGR00900       161 IWVDAVGFAISALLIVSVRIPELAA----SEIQALSN-----------------------AVLRDTREGIKFVLKNPLLR  213 (365)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCC----ccccccch-----------------------hHHHHHHhHHHHHHcCcHHH
Confidence            999887766655444333  22211    00000000                       00011122355667777776


Q ss_pred             chhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308          289 VVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA  364 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (489)
                      ......++........   ...+.|.+.++ .+.+...   .....+++.+++.++.+++.||.+||+....+..+.+++
T Consensus       214 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  290 (365)
T TIGR00900       214 TLLLLALLFNLVFAPA---IVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLA  290 (365)
T ss_pred             HHHHHHHHHHHHHHHH---HHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHH
Confidence            5555444444322211   12344444443 4554433   555667788899999999999999999888776666665


Q ss_pred             HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      ...+.+...       +.+......++.+.+.+.. .+....+..|..|+++|+++.|+.+...+++..++|.+.|.+.|
T Consensus       291 ~~~~~~~~~-------~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~  362 (365)
T TIGR00900       291 ILVVGLTPP-------NFPLFLVLWFAIGVGYGPI-NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLAD  362 (365)
T ss_pred             HHHHHhhch-------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554443321       1233444445555544433 35566688899999999999999999999999999999999998


Q ss_pred             Hhc
Q 011308          445 QLG  447 (489)
Q Consensus       445 ~~g  447 (489)
                      ..|
T Consensus       363 ~~g  365 (365)
T TIGR00900       363 HLG  365 (365)
T ss_pred             HcC
Confidence            754

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.6e-33  Score=248.99  Aligned_cols=383  Identities=19%  Similarity=0.179  Sum_probs=294.1

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ..+.+.+..++.....+...+.++..+.+.+|+|+|++|.  +++.++..+..++..++.|.+.||+|.|++..+++++.
T Consensus        12 ~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~--~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~   89 (417)
T COG2223          12 ARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQK--GLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLL   89 (417)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHH--HHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHH
Confidence            3455666666667777778888999999999999999988  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHH---HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          129 IIGASMSAITKNLW---GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       129 ~i~~~~~~~~~~~~---~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      .+-.+..+++.+.+   ++++++++.|++ |..+.....++++|||++++|.++|++. ..++|..+...++..+....+
T Consensus        90 ~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g  167 (417)
T COG2223          90 LIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG  167 (417)
T ss_pred             HHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence            99999999986555   999999999998 6677899999999999999999999999 888899888888888887777


Q ss_pred             h--HHHHHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhh-hhHHhh
Q 011308          206 W--WRICFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADA-VKFSEL  281 (489)
Q Consensus       206 ~--Wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  281 (489)
                      .  ||....+..+..++..+.. +...|.|+.   +                              ...++.. ..++.+
T Consensus       168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~---r------------------------------~~~~~~~~~~~~~v  214 (417)
T COG2223         168 FLAWRNVAGIYVVALAIAAVLAWLGMNDVPEH---R------------------------------ASVKPQLPAQLKAV  214 (417)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCChhh---h------------------------------ccccccchhHHHHH
Confidence            3  8999888888877765554 446666531   0                              0011111 456778


Q ss_pred             hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308          282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM  361 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (489)
                      +++++.|...+.++..+........+++.|+.+.+...+..++.........+.+.++++|+++||+|.+|........+
T Consensus       215 ~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~  294 (417)
T COG2223         215 FSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGM  294 (417)
T ss_pred             hcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHH
Confidence            88888887777666665543333334444443333333344444666667788889999999999999999988888888


Q ss_pred             HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR  441 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~  441 (489)
                      +++..+.......... ..+....+..++......+.+.... +.++...+| ++.|.+.|+....+.+|++.-|...|.
T Consensus       295 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~  371 (417)
T COG2223         295 ALAAALLSLFLTGFGH-GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGV  371 (417)
T ss_pred             HHHHHHHHcccccccc-CcchHHHHHHHHHHHHHhccCcchh-eeechHHHH-hhhhHHHHHHHHhccccccchhHHHHH
Confidence            8777776665433211 2333444454555566666666544 447778877 469999999999999999999999999


Q ss_pred             HHHHhc-cchhhHHHHHHHHHHHHHhhhccc
Q 011308          442 LLEQLG-PLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       442 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      ..+..| +...|.++..+.+++.+..+....
T Consensus       372 ~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~  402 (417)
T COG2223         372 SLDLTGSYTGAFMLLLAFYLVALVLTWALYA  402 (417)
T ss_pred             HHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998 788888888888888876665443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=100.00  E-value=8.1e-34  Score=269.72  Aligned_cols=370  Identities=15%  Similarity=0.145  Sum_probs=254.7

Q ss_pred             HhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh
Q 011308           59 SSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT  138 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  138 (489)
                      +++...+++..+++..|.+.+++|.+.++.  |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~   80 (379)
T TIGR00881         3 GYAAYYLVRKNFALAMPYLVEEIGLSKTDL--GLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS   80 (379)
T ss_pred             hhhHHHHhHHhhhhhhHHHHHHhCCCHhHH--HHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh
Confidence            345666778888999999999999988887  999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHH-HhhcccccccchHHHHHHHhHHH
Q 011308          139 KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVAL-FVGLPAKEILGWWRICFWVATIP  217 (489)
Q Consensus       139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~-~~~~~l~~~~~~Wr~~f~~~~~~  217 (489)
                      ++++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|..+++ .+++.+.+..+ ||+.|++.++.
T Consensus        81 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  159 (379)
T TIGR00881        81 TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYS-WHWVFIVPGII  159 (379)
T ss_pred             hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCC-chhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999 57776777777 99999988877


Q ss_pred             HHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHH
Q 011308          218 AAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTL  296 (489)
Q Consensus       218 ~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (489)
                      .++..+. .++.+|+|+....+++ ++...       + ..+   ++.++++++.+..+...+++++++.++...+..++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (379)
T TIGR00881       160 AIIVSLICFLLLRDSPQSCGLPPA-EEMPN-------E-EPD---GDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVF  227 (379)
T ss_pred             HHHHHHHHheeeCCCccccccCcc-ccCcc-------c-ccc---cccccccccccchHHHHHHHHhcchHHHHHHHHHH
Confidence            6665444 4446766532110000 00000       0 000   00000011111222345667777777665555444


Q ss_pred             HHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHH
Q 011308          297 FALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIA  371 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~  371 (489)
                      ....    ......+.+.++.+ .+.+...   ......++.+++.++.+++.||..+ |+... ...........+...
T Consensus       228 ~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~-~~~~~~~~~~~~~~~  302 (379)
T TIGR00881       228 VYVV----RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPL-AVFFMALIIVSLLVY  302 (379)
T ss_pred             HHHH----HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHH-HHHHHHHHHHHHHHH
Confidence            4432    23344445555543 4555443   5556677888999999999998643 33322 211111111111111


Q ss_pred             hhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 011308          372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLIL  451 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  451 (489)
                      ...   ...+.........+.+.. ..+..+....+..|..|++.|+++.|+.+...++|+.++|.+.|.+.|..||+..
T Consensus       303 ~~~---~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       303 WLN---PAANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             hcC---cchhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            100   011112222222222222 2233334455788999999999999999999999999999999999999998764


Q ss_pred             h
Q 011308          452 Y  452 (489)
Q Consensus       452 ~  452 (489)
                      |
T Consensus       379 f  379 (379)
T TIGR00881       379 F  379 (379)
T ss_pred             C
Confidence            3

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=100.00  E-value=2.5e-32  Score=260.17  Aligned_cols=368  Identities=13%  Similarity=0.084  Sum_probs=251.6

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      ...+.+..+...++.....|.+|.+.++++.+.++.  ++..+++.++++++++++|+++||+|||+++..+.+++++++
T Consensus        18 ~~~~~~~~~~~~~~~~~~~p~l~~i~~~~~~~~~~~--~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~   95 (413)
T PRK15403         18 PMALILYDFAAYLTTDLIQPGIINVVRDFNADVSLA--PASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLAC   95 (413)
T ss_pred             HHHHHHHHHHHHHHHHhhccCHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHH
Confidence            334455566677788889999999999999988877  899999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHH
Q 011308          133 SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFW  212 (489)
Q Consensus       133 ~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~  212 (489)
                      +++++++|++.++++|+++|++.+...+....++.|++|+++|++++++...+..+|..+||.+++.+.+..+ ||+.|+
T Consensus        96 ~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~g-w~~~f~  174 (413)
T PRK15403         96 AATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVH-WKVLFA  174 (413)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHH
Confidence            9999999999999999999999887777778889999999999999999999999999999999999988878 999999


Q ss_pred             HhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchh
Q 011308          213 VATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVF  291 (489)
Q Consensus       213 ~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      +.++..++..+. ++++||+++.   ++++                           ...+.....++++++++.++...
T Consensus       175 ~~~~~~~i~~~~~~~~lp~~~~~---~~~~---------------------------~~~~~~~~~~~~ll~~~~~~~~~  224 (413)
T PRK15403        175 IIAVMGLIAFVGLLLAMPETVKR---GAVP---------------------------FSAKSVLRDFRNVFRNRLFLTGA  224 (413)
T ss_pred             HHHHHHHHHHHHHHHhCCCCccc---cCCC---------------------------CChHHHHHHHHHHHcCHHHHHHH
Confidence            988887776554 3447876430   0000                           00011123456778888777655


Q ss_pred             hhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 011308          292 IGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGV  367 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (489)
                      +...+....    ......+.|.++++ .+.+....   ......+.+++..+.+++.++..+++..........++.++
T Consensus       225 l~~~~~~~~----~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l  300 (413)
T PRK15403        225 ATLSLSYIP----MMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLAL  300 (413)
T ss_pred             HHHHHHHHH----HHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHH
Confidence            554443332    23333445655554 36665542   23345566666677777665444434333333333333333


Q ss_pred             HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      +.......   .+..+..+....+++.+.+.... ......-+. ....+|++.++.+.....+...++...+++.+. +
T Consensus       301 ~~~~~~~~---~~~~~~~~~~~~l~~~G~~~~~p-~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~  374 (413)
T PRK15403        301 LIVGNLLW---PHVWLWSVLGTSLYAFGIGLIFP-TLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-G  374 (413)
T ss_pred             HHHHHHHc---cccHHHHHHHHHHHHHHHHHHhH-HHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-C
Confidence            32221110   11122223444445555444332 222111111 222379999999999999999999999987776 5


Q ss_pred             cchhhHHHHHHHHHHH
Q 011308          448 PLILYTIFGSFCFLAV  463 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~  463 (489)
                      ....|...++++.+..
T Consensus       375 ~~~~~~~~~~~~~~~~  390 (413)
T PRK15403        375 GRLPFHLLAVVAGVIV  390 (413)
T ss_pred             CchHHHHHHHHHHHHH
Confidence            5556655555544443

>PRK11043 putative transporter; Provisional

Probab=100.00  E-value=1.3e-31  Score=255.95  Aligned_cols=343  Identities=18%  Similarity=0.127  Sum_probs=247.9

Q ss_pred             hhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh
Q 011308           60 SFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK  139 (489)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~  139 (489)
                      ..+..+....+.|.+|.+.+++|.++++.  |++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++.+++
T Consensus        15 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~   92 (401)
T PRK11043         15 SMLGFLATDMYLPAFKAIQADLQTSASAV--SASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE   92 (401)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc
Confidence            44455667778889999999999988877  9999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHH
Q 011308          140 NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA  219 (489)
Q Consensus       140 ~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~  219 (489)
                      +++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.+..+ ||+.|++.++..+
T Consensus        93 ~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~~~~~~~~~~~~  171 (401)
T PRK11043         93 SAAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFG-WQAIFATLFAITL  171 (401)
T ss_pred             CHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Confidence            999999999999999888888888999999999999999999988899999999999999998888 9999999888877


Q ss_pred             HHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHh
Q 011308          220 FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFAL  299 (489)
Q Consensus       220 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      +..+..++++|+++.   + +                              +++.+.+++++++++.++...+...+...
T Consensus       172 ~~~~~~~~~~~~~~~---~-~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (401)
T PRK11043        172 LLILPTLRLKPSKKA---R-K------------------------------QSQDALTFKQLLKSKTYLGNVLIFAACSA  217 (401)
T ss_pred             HHHHHHHHcCCCCCc---c-c------------------------------cchHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            766655555554320   0 0                              00112245566666665543333222221


Q ss_pred             hhhcchhHHHHhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 011308          300 QQLSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFV  376 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                          .......+.|.+.++.+.+....   .....++.+++.+..+++.||+++|+..........++.+.+....... 
T Consensus       218 ----~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  292 (401)
T PRK11043        218 ----AFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS-  292 (401)
T ss_pred             ----HHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence                22233345566666677766543   2334567778888899999999988876655555444433332222111 


Q ss_pred             CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011308          377 SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  448 (489)
                        ....+..+....+.+.+.+. ..+.......+..| +++|++.|+.+.....++..++.+.|.+.+....
T Consensus       293 --~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~  360 (401)
T PRK11043        293 --HPSLVPLLIPFCVMAAANGA-IYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSALISTPLL  360 (401)
T ss_pred             --cCcHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChh
Confidence              11222233333344444433 23444445556666 5799999999999999999999999988774333

>TIGR00899 2A0120 sugar efflux transporter

Probab=100.00  E-value=5.6e-32  Score=256.58  Aligned_cols=359  Identities=15%  Similarity=0.132  Sum_probs=253.4

Q ss_pred             HHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhh-hhhHHHHHHHHHH
Q 011308           58 ISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ-LCALPMIIGASMS  135 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~  135 (489)
                      +.+++..+..+...+.+|. +.+++|.+..+.  |++.+.+.+...+.+++.|+++||+||||.++ .+..+..++.+++
T Consensus         4 ~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~   81 (375)
T TIGR00899         4 LVAFLTGIAGALQFPTLSLFLSEEVRARPAMI--GLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLF   81 (375)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHcccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHH
Confidence            3456667777788888886 567899988777  99999999999999999999999999988765 4566667778888


Q ss_pred             hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhH--HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY--GSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~--~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                      ++++|++.+++.|+++|.+.+...|...+++.|+.|+++|++.  .+....+.++|.++++.+++.+.+..+ ||+.|++
T Consensus        82 ~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~-~~~~f~~  160 (375)
T TIGR00899        82 AWNRNYFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFG-FTVMFLT  160 (375)
T ss_pred             HhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcc-cHHHHHH
Confidence            9999999999999999988888888888899999887777654  577888889999999999999998888 9999999


Q ss_pred             hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++..++..+.. +++||+|+...++                                  +...+.++.++++.++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~  206 (375)
T TIGR00899       161 AALAFVLCGVLVWLFLPSYPRGAPGA----------------------------------LTRLEVRGLLASRDTRLLFV  206 (375)
T ss_pred             HHHHHHHHHHHHHHhCCCcccCcccc----------------------------------cCcchhhhhhcCcchHHHHH
Confidence            988776665554 4478765310000                                  00011223455555554443


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCchhH---HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVF-KNAGVPSDSGNI---CVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ  368 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (489)
                      ..++....    ......+.+.++ +..+.+......   ......+++.++.|++.||+++|+.+..+.+...+....+
T Consensus       207 ~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  282 (375)
T TIGR00899       207 ACTLMWGC----NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGL  282 (375)
T ss_pred             HHHHHHHH----HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            33333221    122222334443 345665554322   3334556778899999999999998877665544443333


Q ss_pred             HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011308          369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  448 (489)
                      ....        +.+.......+.+.+.+.. .+....+..|..|+ +++++.++.+...++|..++|.+.|.+.+..|+
T Consensus       283 ~~~~--------~~~~~~~~~~~~g~~~g~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~  352 (375)
T TIGR00899       283 AADN--------SLWALLMLQLLNAIFIGIL-AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSY  352 (375)
T ss_pred             HHHH--------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2221        1122333333333333322 24455677888875 577999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHhh
Q 011308          449 LILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~  467 (489)
                      +..|.+.+++++++.++..
T Consensus       353 ~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       353 HAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             hhHHHHHHHHHHHHHHHHh
Confidence            9999888888877766654

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=100.00  E-value=5.1e-32  Score=257.83  Aligned_cols=350  Identities=21%  Similarity=0.209  Sum_probs=242.3

Q ss_pred             HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (489)
                      ......+..........+.+|.+.+++|.+.++.  ++..+.+.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~   84 (392)
T PRK10473          7 CSFALVLLYPAGIDMYLVGLPRIAADLNASEAQL--HIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL   84 (392)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence            3444445555566667788999999999988777  99999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308          135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA  214 (489)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~  214 (489)
                      +..+++++.+++.|+++|++.+...+....++.|++|+++|+++.++.+....+|..++|.+++.+.+..+ ||+.|++.
T Consensus        85 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g-~~~~~~~~  163 (392)
T PRK10473         85 CSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFP-WQSLFYTM  163 (392)
T ss_pred             HHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC-hHHHHHHH
Confidence            99999999999999999999999899999999999999999999999999999999999999998887778 99999998


Q ss_pred             HHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          215 TIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++..++..+. .+++||+++.   +++ +                            +.......++.++++.++.....
T Consensus       164 ~~~~~i~~~~~~~~~~~~~~~---~~~-~----------------------------~~~~~~~~~~~~~~~~~~~~~~~  211 (392)
T PRK10473        164 AAMGILVLLLSLFILKETRPA---RAP-A----------------------------ASSKPRENSESLLNRFFLSRLVI  211 (392)
T ss_pred             HHHHHHHHHHHHHHcCCCCCc---ccC-C----------------------------ccchHHHHHHHHhCHHHHHHHHH
Confidence            8777666554 3446665421   000 0                            00001122334555554433332


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA  369 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (489)
                      ..+....    ......+.+.++ ++.|.+...   .....+++.+++.++.+++.||+++|+.+..+..+..++.+.+.
T Consensus       212 ~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  287 (392)
T PRK10473        212 TTLSVTV----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA  287 (392)
T ss_pred             HHHHHHH----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            2222111    111222233333 345666544   44556778889999999999999999998888877777666655


Q ss_pred             HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308          370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  449 (489)
                      +....        ........+...+.+.+.. .  ....+..|.++++   |.......++..+++.+.+.+.+..|+.
T Consensus       288 ~~~~~--------~~~~~~~~l~~~g~~~~~~-~--~~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~  353 (392)
T PRK10473        288 LSPSH--------AVSLFGITLICAGFSVGFG-V--AMSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGIS  353 (392)
T ss_pred             HHHHH--------HHHHHHHHHHHHHHHHHhH-H--HHHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            54321        1122223333333333222 1  2233444544343   4444555677778888888888888876


Q ss_pred             hhhHHHHH
Q 011308          450 ILYTIFGS  457 (489)
Q Consensus       450 ~~~~~~~~  457 (489)
                      ......+.
T Consensus       354 ~~~~~~~~  361 (392)
T PRK10473        354 AWNMLIGI  361 (392)
T ss_pred             hhHHHHHH
Confidence            54444443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=100.00  E-value=1.4e-31  Score=253.45  Aligned_cols=370  Identities=16%  Similarity=0.063  Sum_probs=251.8

Q ss_pred             HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (489)
                      .++++.++..++........+.+.+|++.+..+.  +++.+.+.+++.++++++|+++||+|||++++.+.++.++++++
T Consensus         7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~   84 (393)
T PRK11195          7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQ--PLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLL   84 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHH
Confidence            4456666666655555666667788888876666  99999999999999999999999999999999999999999988


Q ss_pred             HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308          135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA  214 (489)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~  214 (489)
                      ++++.+.   ++.|+++|++.+...|+..+++.|++|+++|++++++.+....+|.++||.+++++.+..  |+..+.+.
T Consensus        85 ~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~--~~~~~~i~  159 (393)
T PRK11195         85 MLFGIHP---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH--AEAALAVC  159 (393)
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence            8777664   688999999999999999999999999999999999999999999999999999998853  77777776


Q ss_pred             HHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhH
Q 011308          215 TIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGS  294 (489)
Q Consensus       215 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (489)
                      +...++..+..+.+||+++..  ++++++..+..                       ++....++.+++++.++......
T Consensus       160 ~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~~  214 (393)
T PRK11195        160 ALIYLLAALFNLFIPRLGARR--PGQSWNPIALL-----------------------RDFFHACRVLWRDKLGRFSLAGT  214 (393)
T ss_pred             HHHHHHHHHHHhcCCCCcccc--cccCCCHHHHH-----------------------HHHHHHHHHHHhCchhHHHHHHH
Confidence            655555544555678765311  11100000000                       00011234566777665444433


Q ss_pred             HHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHH
Q 011308          295 TLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIA  371 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~  371 (489)
                      .+............+.|.+..   .+.+...   .....+++.+++.+..+++.||.++++.+..+.. .++....+.+.
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~---lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~  290 (393)
T PRK11195        215 TLFWGAGATLRFLVLAWAPVA---LGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQ  290 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---cCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHH
Confidence            333322222222233333333   3444433   5566678888999999999999888877666643 23322222221


Q ss_pred             hhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Q 011308          372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI-RAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLI  450 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~  450 (489)
                      .        +.+.......+.+.+.+....+. .+...+..|++. +|++.++.+...+++..++..+.+.+ +..|-..
T Consensus       291 ~--------~~~~~~~~~~~~G~~~g~~~~~~-~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~  360 (393)
T PRK11195        291 H--------SLLPAYPLLILIGALGGFFVVPM-NALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPV  360 (393)
T ss_pred             h--------HHHHHHHHHHHHHHhhhhhhhhH-HHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCH
Confidence            1        12223333444445444444343 445677766554 79999999999999999999999854 6788777


Q ss_pred             hhHHHHHHHHHHHHHhhhcc
Q 011308          451 LYTIFGSFCFLAVIYVKRNV  470 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~  470 (489)
                      .+.+.+...+++..+.+.++
T Consensus       361 ~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK11195        361 VAVIVGFGLLVALAMALLWR  380 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            77666655555555554444

>PRK10133 L-fucose transporter; Provisional

Probab=100.00  E-value=1.1e-31  Score=256.84  Aligned_cols=367  Identities=13%  Similarity=0.085  Sum_probs=255.5

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ....+..+++..+..++......+..|.+++++|+++++.  |++.+.+.+++.+++++.|++.||+|||+++..+.+++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~--gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~  101 (438)
T PRK10133         24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY  101 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            3445566667778888888889999999999999988777  99999999999999999999999999999999999999


Q ss_pred             HHHHHHH---hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc---
Q 011308          129 IIGASMS---AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE---  202 (489)
Q Consensus       129 ~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---  202 (489)
                      +++++++   .++++++.++++|+++|+|.+...+..+.++.|+.++++|.+.+++.+..+.+|..+++.+++.+..   
T Consensus       102 ~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~  181 (438)
T PRK10133        102 ALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNV  181 (438)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            9999885   4688999999999999999999999999999998877777778999999999999999988765430   


Q ss_pred             ---------------c--------cchHHHHHHHhHHH-HHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCc
Q 011308          203 ---------------I--------LGWWRICFWVATIP-AAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHV  257 (489)
Q Consensus       203 ---------------~--------~~~Wr~~f~~~~~~-~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (489)
                                     .        .+ ||++|+..... .++..+. ....||.+.    +++                 
T Consensus       182 ~~~~~~~~~~l~~~~~~~w~~~~~~~-w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~-----------------  239 (438)
T PRK10133        182 PHQSQDVLDKMTPEQLSAYKHSLVLS-VQTPYMIIVAIVLLVALLIMLTKFPALQS----DNH-----------------  239 (438)
T ss_pred             cccchhhhhccChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc----ccc-----------------
Confidence                           0        13 67777643333 3232222 222444221    000                 


Q ss_pred             hHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHH-HH-hcCCCCCc---hhHHHHH
Q 011308          258 KYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTV-FK-NAGVPSDS---GNICVGI  332 (489)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~---~~~~~~~  332 (489)
                               .+++..+...+.++++++|.++...+..++......    ....|.+.+ .+ ..+.+...   ......+
T Consensus       240 ---------~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~  306 (438)
T PRK10133        240 ---------SDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQT----ACWSYLIRYAVEEIPGMTAGFAANYLTGTMV  306 (438)
T ss_pred             ---------ccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCCHHHHHHHHHHHHH
Confidence                     000001112234567777877655544444433222    222334434 33 35666654   4567778


Q ss_pred             HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC
Q 011308          333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF  412 (489)
Q Consensus       333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (489)
                      +.++++++++++.||+++|+.+..+..+..+.+++..+...        . ..+..+.+.+++.+.. .|..+....+..
T Consensus       307 ~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~l~glg~~~i-~P~~~s~a~~~~  376 (438)
T PRK10133        307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG--------H-VGLIALTLCSAFMSIQ-YPTIFSLGIKNL  376 (438)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC--------h-HHHHHHHHHHHHHHHH-HHHHHHHHHccc
Confidence            88999999999999999999888776666555444332211        1 1233344455555433 456666777877


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHH
Q 011308          413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVI  464 (489)
Q Consensus       413 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~  464 (489)
                      |+ +.+++.++.. +...|+.++|.+.|.+.|..| .+..|++.....+....
T Consensus       377 ~~-~~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~  427 (438)
T PRK10133        377 GQ-DTKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFI  427 (438)
T ss_pred             ch-hhccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            74 4788888886 455788999999999999887 56666655444444333

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.6e-32  Score=255.69  Aligned_cols=363  Identities=18%  Similarity=0.182  Sum_probs=263.2

Q ss_pred             hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHHHHHhhcc
Q 011308           78 SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRLFVGTGM  155 (489)
Q Consensus        78 ~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~  155 (489)
                      ..+++++.++.  |++.++++.|+.+++++.|+++||+|.|+++..+.++.++++++...+.  +++.+++.|++||++.
T Consensus        65 ~~~~~ws~~~k--~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~  142 (466)
T KOG2532|consen   65 AGEYDWSSTEK--GLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQ  142 (466)
T ss_pred             CceecCCHHHH--HHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHH
Confidence            44677777666  9999999999999999999999999999999999999999999998875  5567789999999999


Q ss_pred             cchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-cchHHHHHHHhHHHHHHHHHHhhc-ccCChh
Q 011308          156 GIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-LGWWRICFWVATIPAAFLALFMEF-CAESPH  233 (489)
Q Consensus       156 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~  233 (489)
                      |..+|+...+..+|.|++||++..++..++..+|.+++.+++|.+.+. .| |+++|++.++.+++..+++++ ..|+|.
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~G-W~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLG-WPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCC-CchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            999999999999999999999999999999999999999999999998 77 999999999999998887655 667774


Q ss_pred             HHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHH
Q 011308          234 WLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSS  313 (489)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (489)
                      . .+.-..+|.+.. ++   .          ..++..+++.+.+++++++++.+|.+.+..+....    ....+..|+|
T Consensus       222 ~-h~~is~~El~~I-~~---~----------k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~----~~~~l~~y~P  282 (466)
T KOG2532|consen  222 K-HPNISEKELKYI-EK---G----------KSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNW----GFYLLLTYLP  282 (466)
T ss_pred             c-CCCCCHHHHHHH-Hh---c----------ccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHH----HHHHHHHHhh
Confidence            2 111111111111 10   0          01111112256789999999999988777666665    4555666666


Q ss_pred             HHHHh-cCCCC---CchhHHHHHHHHHHHHHHHHHHhhhCCc--------hh-HHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          314 TVFKN-AGVPS---DSGNICVGIANLSGSIIAMILMDKLGRR--------VL-LLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       314 ~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .++++ .+++.   +....+..+...+..+++|.++||+.+|        +. -..+....+++++++.+...      .
T Consensus       283 tY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~------~  356 (466)
T KOG2532|consen  283 TYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSD------E  356 (466)
T ss_pred             HHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCC------C
Confidence            66664 44443   3467777888999999999999998663        11 12222333333333332221      1


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhccchhhHHHHH
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE---QLGPLILYTIFGS  457 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---~~g~~~~~~~~~~  457 (489)
                      ..+..+..+.+.. +......+-.+....+..| ++.+..+|+.+....+.++++|.+.|.+..   ...|+.+|++.++
T Consensus       357 ~~~~a~~~l~~~~-~~~g~~~~Gf~~~~~~~ap-q~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~  434 (466)
T KOG2532|consen  357 HRLLAVILLTIAI-GLSGFNISGFYKNHQDIAP-QHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAG  434 (466)
T ss_pred             cchHHHHHHHHHH-HHcccchhhhHhhhhhccc-hHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHH
Confidence            1122222222222 2221222222323334345 789999999999999999999999999983   3469999999999


Q ss_pred             HHHHHHHHhhhcc
Q 011308          458 FCFLAVIYVKRNV  470 (489)
Q Consensus       458 ~~~~~~~~~~~~~  470 (489)
                      +.+++.++..++-
T Consensus       435 i~~~~~i~f~~f~  447 (466)
T KOG2532|consen  435 ILIVGNIIFLFFG  447 (466)
T ss_pred             HHHHhchheeEee
Confidence            9999887665553

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=100.00  E-value=1.4e-30  Score=244.90  Aligned_cols=342  Identities=28%  Similarity=0.399  Sum_probs=276.9

Q ss_pred             HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM  134 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (489)
                      .+.+..+...++.....+..|.+.+++|.+.++.  +++.+.+.++..+++++.|+++||+|||+.+..+.++..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~   80 (352)
T cd06174           3 LLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQA--GLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLL   80 (352)
T ss_pred             HHHHHHHHHHHhhhhhHhhHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHH
Confidence            3445667777888888999999999998887777  99999999999999999999999999999999999999999999


Q ss_pred             HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308          135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA  214 (489)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~  214 (489)
                      ..++++++.++++|++.|++.+...+....++.|++|+++|++.+++......+|..+++.+++.+.+..+ ||+.|++.
T Consensus        81 ~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~  159 (352)
T cd06174          81 LAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLG-WRWLFLIL  159 (352)
T ss_pred             HHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888 99999998


Q ss_pred             HHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhH
Q 011308          215 TIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGS  294 (489)
Q Consensus       215 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (489)
                      ++..++..+...+++                                                       |.++...+..
T Consensus       160 ~~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~  184 (352)
T cd06174         160 AILGLLLALLLLFLL-------------------------------------------------------RLLLLLALAF  184 (352)
T ss_pred             HHHHHHHHHHHHHHH-------------------------------------------------------HHHHHHHHHH
Confidence            887776655543321                                                       1122222222


Q ss_pred             HHHHhhhhcchhHHHHhHHHHHHhc-CCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCch-hHHHHHHHHHHHHHHHH
Q 011308          295 TLFALQQLSGINAVFYFSSTVFKNA-GVPSDS---GNICVGIANLSGSIIAMILMDKLGRRV-LLLGSFLGMAIAMGVQA  369 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~-~~~~~~~~~~~~~~~~~  369 (489)
                      ++.    .........+.+.+.++. +.+...   ......++..++.++.+++.||+++|+ .+..+..+..++...+.
T Consensus       185 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         185 FLL----SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHH----HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            222    223455555666666654 554443   556667888999999999999999999 88888887777776665


Q ss_pred             HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308          370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  449 (489)
                      ....        .+.......+.+.+.+. ..+....+..|..|+++|++.+|+.+...+++..++|.+.+.+.+..++.
T Consensus       261 ~~~~--------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~  331 (352)
T cd06174         261 LAPS--------LALLLVALLLLGFGLGF-AFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYG  331 (352)
T ss_pred             Hhcc--------HHHHHHHHHHHHHHHhc-cchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            5432        23334444445554443 44666778999999999999999999999999999999999999989999


Q ss_pred             hhhHHHHHHHHHHHHHhh
Q 011308          450 ILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~  467 (489)
                      ..+.+.+++.+++.++.+
T Consensus       332 ~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         332 GVFLILAALALLAALLLL  349 (352)
T ss_pred             hHHHHHHHHHHHHHHHhe
Confidence            999999988888776654

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=100.00  E-value=2.7e-32  Score=256.54  Aligned_cols=343  Identities=22%  Similarity=0.330  Sum_probs=250.0

Q ss_pred             HHHhhhhccccccccchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308           57 IISSFLFGYHLGVVNETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS  135 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (489)
                      +++.++..++.....+.+| .+.+++|.+.++.  |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++.
T Consensus         2 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen    2 FLAFFLSGFGFSIISPALPLYLAEELGLSPSQI--GLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-HHHCCSTTTSHCH--HHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            4566777777788888999 8999999998888  999999999999999999999999999999999999999997777


Q ss_pred             hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308          136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT  215 (489)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~  215 (489)
                      .+++|++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|.++++.+++.+.+..+ ||+.|++.+
T Consensus        80 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~-~~~~~~~~~  158 (352)
T PF07690_consen   80 AFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG-WRWAFLISA  158 (352)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH-HCCHHHHHH
T ss_pred             hhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc-ccccccccc
Confidence            7778888999999999999999999999999999999999999999999999999999999999998888 999999999


Q ss_pred             HHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhh-hHHhhhccccccchhhh
Q 011308          216 IPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAV-KFSELISPRNFGVVFIG  293 (489)
Q Consensus       216 ~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  293 (489)
                      +..++..++. .+++++++....+++.++.                        ++++++.. .++.+++++.+|..+..
T Consensus       159 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~  214 (352)
T PF07690_consen  159 ILSLIAAILFILFLPEPPPPRERESPKESE------------------------SKKPKPLKPGFKSLFKNPVLWILLIA  214 (352)
T ss_dssp             HHHHHHHHHHHCCC---STTTT--SSTTTT--------------------------HHHCCCH-CTHHHHHHCCHHHHHH
T ss_pred             chhhhhhhhHhhhhhhcccccccccccccc------------------------cccccccccccccccccchhhhhhhh
Confidence            9888876642 3444443211111000000                        00011111 25566666766633333


Q ss_pred             HHHHHhhhhcchhHHHHhHHHH-HHhcCCC-CCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTV-FKNAGVP-SDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ  368 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (489)
                      .++..+    .......+.+.+ .+..+.+ ...   .....++...++.++.+++.||+++|+..........+..+.+
T Consensus       215 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  290 (352)
T PF07690_consen  215 FFLFFF----VFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGL  290 (352)
T ss_dssp             HHHHHH----HHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHH----HHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Confidence            333332    233355555554 4445555 233   3555667777789999999999998877776666665555544


Q ss_pred             HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 011308          369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG  436 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  436 (489)
                      .+....     .+....+....+.+.+.+.. .+....+..|..|++++|++.|+.+...++++.++|
T Consensus       291 ~~~~~~-----~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  291 LLLPFS-----SSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             CCSHHH-----CHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHh-----hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            433321     12223333444455544433 456677899999999999999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10054 putative transporter; Provisional

Probab=100.00  E-value=5.9e-31  Score=249.44  Aligned_cols=366  Identities=16%  Similarity=0.117  Sum_probs=261.0

Q ss_pred             HHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      .+.+..++.........+.+|. +.+++|++..+.  |++.+.+.+++.+++++.|+++||+|||+++..+.++.+++.+
T Consensus        11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~   88 (395)
T PRK10054         11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLI--GYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFI   88 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHH
Confidence            4444556666666667776664 557899988877  9999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                      +.+++++++.++++|++.|.+.+...+....+..|.+|+++|++++++.....++|.+++|.+++.+.+ .+ ||..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g-~~~~f~~  166 (395)
T PRK10054         89 AIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QS-INLPFWL  166 (395)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hc-cCcHHHH
Confidence            999999999999999999988787888889999999999999999999999999999999999998875 56 9999998


Q ss_pred             hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++..++..+.. +++||+++.   +++  +                            +++..+.++.++++.++....
T Consensus       167 ~~~~~~i~~i~~~~~~~~~~~~---~~~--~----------------------------~~~~~~~~~~~~~~~~~~~~~  213 (395)
T PRK10054        167 AAICSAFPLVFIQIWVQRSEKA---IAT--E----------------------------TGSVWSPSVLLQDKALLWFTC  213 (395)
T ss_pred             HHHHHHHHHHHHHHHHhccccc---ccc--c----------------------------hhhhhhhhhhccCceehHHHH
Confidence            887776654443 335544310   000  0                            000112255677888876665


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA  369 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (489)
                      ..++..+.........+.+.+.. .+.+.+...   .....++......+..+++.||.++|+.+..+..+..++...+.
T Consensus       214 ~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (395)
T PRK10054        214 SGFLASFVSGAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI  292 (395)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH
Confidence            55554443322223344444332 222332222   22223344445567778999999999988888777766665554


Q ss_pred             HHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308          370 IAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~  449 (489)
                      +..       ++.+.......+++.+... ..|....++.+..|++.++++.+..+ ...+|..+||.+.|.+.|+.|+.
T Consensus       293 ~~~-------~~~~~~~~~~~~~~~g~~~-~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~  363 (395)
T PRK10054        293 FSG-------NSLLLWGMSAAVFTVGEII-YAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPW  363 (395)
T ss_pred             Hcc-------hHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChh
Confidence            321       1122233334444444332 23455667888889999999998765 67789999999999999999988


Q ss_pred             hhhHHHHHHHHHHHHHhh
Q 011308          450 ILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~  467 (489)
                      ..|.+.+.+..+..++..
T Consensus       364 ~~~~~~~~~~~~~~~~~~  381 (395)
T PRK10054        364 SLFVILALAIVAAWLLML  381 (395)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            888887777666665554

>PRK11010 ampG muropeptide transporter; Validated

Probab=100.00  E-value=6.8e-31  Score=254.96  Aligned_cols=372  Identities=16%  Similarity=0.148  Sum_probs=257.3

Q ss_pred             HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchhH-hhhhhHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRRA-FQLCALPM  128 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~  128 (489)
                      .+++..+..+......++.+|.+.++.|.+.++.  |.+ +.....+ ++++++|+++||+     ||||. +..+.+..
T Consensus        16 ~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~i--g~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~   91 (491)
T PRK11010         16 ILLILGFASGLPLALTSGTLQAWMTVENIDLKTI--GFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLL   91 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHH
Confidence            3444455666677778888999999989887777  665 4444444 6899999999999     99985 66777777


Q ss_pred             HHHHHHHhhh---hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc-cc
Q 011308          129 IIGASMSAIT---KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE-IL  204 (489)
Q Consensus       129 ~i~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-~~  204 (489)
                      +++..++++.   ++++.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++.++.+ ..
T Consensus        92 ~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~  171 (491)
T PRK11010         92 LVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYL  171 (491)
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            7777777664   4788899999999999999999999999999999999999999999999999999999999988 45


Q ss_pred             chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308          205 GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP  284 (489)
Q Consensus       205 ~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                      | ||..|++.++..++..+..+++||+++.   ++++++                          .++....++++.+++
T Consensus       172 G-Wr~~f~i~a~l~ll~~l~~~~~~e~~~~---~~~~~~--------------------------~~~~~~~~l~~~~~~  221 (491)
T PRK11010        172 G-WQGMYWLMAALLIPCIIATLLAPEPTDT---IPVPKT--------------------------LEQAVVAPLRDFFGR  221 (491)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHhcCCCccc---cccccc--------------------------hhhhHHHHHHHHHcC
Confidence            7 9999999988877766655567776431   000000                          000012245566766


Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHH-HHhcCCCCCchhHH----HHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTV-FKNAGVPSDSGNIC----VGIANLSGSIIAMILMDKLGRRVLLLGSFL  359 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (489)
                      +..+......++......    ....+.+.+ .+..|.+.......    ..++.+++.+++|+++||+++|+.+..+.+
T Consensus       222 ~~~~~~ll~~~l~~~~~~----~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~  297 (491)
T PRK11010        222 NNAWLILLLIVLYKLGDA----FAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGI  297 (491)
T ss_pred             cCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            665544444333332221    222223333 34567776653332    235778999999999999998887766555


Q ss_pred             HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF  439 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  439 (489)
                      +.++..+.+......    ..+.+.......+.....+.+. +...++..+..+++.+++..|+.+....+|..+++.+.
T Consensus       298 l~~l~~l~~~~l~~~----~~~~~~l~~~~~l~~~~~g~~~-~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~  372 (491)
T PRK11010        298 LQGVSNAGYWLLSIT----DKNLYSMGAAVFFENLCGGMGT-AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVA  372 (491)
T ss_pred             HHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            444443333221111    1122222222222122222222 23355677888888899999999999999999999999


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHHHHhhhc
Q 011308          440 LRLLEQLGPLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       440 g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      |.+.|..||...|.+.+++++++.++....
T Consensus       373 G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        373 GWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988988888888887766554

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=100.00  E-value=2.5e-30  Score=245.31  Aligned_cols=354  Identities=14%  Similarity=0.079  Sum_probs=254.3

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      +..++...+..++..+..++.+|.+++++|++..+.  |++.+.+.+++.+++++.|++.||+|||+++..+.++++++.
T Consensus         5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~--g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~   82 (410)
T TIGR00885         5 FALITSLFALWGFANDITNPMVPQFQQAFTLTAFQA--ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGA   82 (410)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            456667777888888888999999999999988877  999999999999999999999999999999999999999999


Q ss_pred             HHHhh---hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc------
Q 011308          133 SMSAI---TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI------  203 (489)
Q Consensus       133 ~~~~~---~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~------  203 (489)
                      +++..   .++++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+++.+++.+...      
T Consensus        83 ~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~  162 (410)
T TIGR00885        83 FLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQS  162 (410)
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccch
Confidence            88654   468999999999999999999999999999999999999999999999999999999998766422      


Q ss_pred             --------------------cchHHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHH
Q 011308          204 --------------------LGWWRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSM  261 (489)
Q Consensus       204 --------------------~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (489)
                                          .+ ||++|++.+++.++..+...+  .||.++     ++                     
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~-w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~~---------------------  215 (410)
T TIGR00885       163 QDVLDKLSPEELSAIKHSDLAS-VQTPYMIIGAVVLAVALLIMLTKMPALNH-----SD---------------------  215 (410)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----cc---------------------
Confidence                                24 999999888876665544433  332110     00                     


Q ss_pred             HHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcC--CCCCc---hhHHHHHHHHH
Q 011308          262 AELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAG--VPSDS---GNICVGIANLS  336 (489)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~  336 (489)
                             +++.+...+.++++|++.++...+..+++....    .....+++.+..+.+  .+.+.   ..........+
T Consensus       216 -------~~~~~~~~~~~~~~~~~~~~~~~l~~f~yvg~e----~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~v  284 (410)
T TIGR00885       216 -------AKQISFSASLSRLARIRHYREGVIAQFFYVGVQ----IMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFI  284 (410)
T ss_pred             -------cccccchhhHHHHHhChhHHHHHHHHHHHHHHH----HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHH
Confidence                   000011113345677777766555555544433    233355555555432  22221   23334466789


Q ss_pred             HHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhh
Q 011308          337 GSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI  416 (489)
Q Consensus       337 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  416 (489)
                      |+++++++.||+++|+.+.....+..+..++..+...         ........+.+++.+..+ |..+....+..+++.
T Consensus       285 GR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~~---------~~~~~~l~~~glf~s~~f-p~i~sl~~~~~g~~~  354 (410)
T TIGR00885       285 SRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAGG---------HVGLYCLTLCSAFMSLMF-PTIYGIALKGLGQDT  354 (410)
T ss_pred             HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhh
Confidence            9999999999999999887777766666555544221         112333444444444333 677778888888665


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhhHHHHHH
Q 011308          417 RAKAMAVCMAVHWVINFFVGLLFLRLLEQL------GPLILYTIFGSF  458 (489)
Q Consensus       417 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~  458 (489)
                      +..+.++....  +|+.+.|++.|.+.|..      +.+..|++...+
T Consensus       355 ~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       355 KYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             hhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            54455544443  99999999999999964      355666654333

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.98  E-value=1.4e-30  Score=247.06  Aligned_cols=333  Identities=17%  Similarity=0.182  Sum_probs=231.8

Q ss_pred             cccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHH
Q 011308           65 YHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM  144 (489)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l  144 (489)
                      +...+..|.+|.+.+++|+++++.  +++.+++.++..++++++|+++||+|||+++..+.++.+++.+++.++++++.+
T Consensus         5 ~~~~~~~p~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~   82 (377)
T PRK11102          5 LAIDMYLPALPVIAADFGVSAGSV--QMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTIDQL   82 (377)
T ss_pred             hHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHH
Confidence            345567789999999999988877  999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      ++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++.++..++..+.
T Consensus        83 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102         83 IYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFS-WHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-hHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998888 999999888777666544


Q ss_pred             -hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308          225 -MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS  303 (489)
Q Consensus       225 -~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
                       .+++||+++.   +++.                          +.+.++...++++.++++..+...+...+...    
T Consensus       162 ~~~~~~~~~~~---~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  208 (377)
T PRK11102        162 VFFFIPETLPK---ERRQ--------------------------PFHLRTTIRNFASLFRHKRVLGYMLASGFSFA----  208 (377)
T ss_pred             HHHhCCccCcc---cccC--------------------------CCChHHHHHHHHHHHcChHHHHHHHHHHHHHH----
Confidence             3456665421   0000                          00000112234556666665544333322221    


Q ss_pred             chhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          304 GINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       304 ~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      .......+.+.++ +..+.+...   ......++.+++.++.+++.||+++|+.+..+..+..+..+.+......    .
T Consensus       209 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~----~  284 (377)
T PRK11102        209 GMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL----D  284 (377)
T ss_pred             HHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH----h
Confidence            1222222233333 335665544   4555667788899999999999999998887776544333222222110    1


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHH
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHW-VINFFVGLLF  439 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~  439 (489)
                      ...+.......++..+.+.. .+.......|..| +.++++.++.+.... ++..+++.+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~  343 (377)
T PRK11102        285 LGFWALVVGVAAFVGCVSMI-SSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLS  343 (377)
T ss_pred             hhHHHHHHHHHHHHHHHHHh-hHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            11122222232333333222 2233345677767 779999999887654 4455555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.98  E-value=9.3e-31  Score=250.05  Aligned_cols=358  Identities=19%  Similarity=0.187  Sum_probs=237.2

Q ss_pred             hhhccccccccchhhhhhhcccccccchHHHHHHHH--H---HHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308           61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVST--C---LGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS  135 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~--~---~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (489)
                      +.+.+++..++...+.+.+++..+.++.+.+.+.+.  +   .++..+++++.|+++||+|||+++..+.++..++.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   82 (394)
T TIGR00883         3 AVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLI   82 (394)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            455667777777778777776532222222444432  2   33344689999999999999999999999999999999


Q ss_pred             hhhhhHH--------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc------
Q 011308          136 AITKNLW--------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK------  201 (489)
Q Consensus       136 ~~~~~~~--------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~------  201 (489)
                      +++++++        .++++|+++|++.+...+....++.|++|+++|++..++.+.+..+|.++++.++..+.      
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~  162 (394)
T TIGR00883        83 GLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD  162 (394)
T ss_pred             hhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            9998875        47889999999999999999999999999999999999999999999999998876543      


Q ss_pred             --cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308          202 --EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS  279 (489)
Q Consensus       202 --~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (489)
                        +..+ ||+.|++.++..++..+.....+|++++..+++                              ++++...+.+
T Consensus       163 ~~~~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~  211 (394)
T TIGR00883       163 ALLEWG-WRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQE------------------------------KHKKKRGPIR  211 (394)
T ss_pred             Hhhccc-hHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHh------------------------------ccccccCCHH
Confidence              2446 999999877776665555455676654211100                              0011122334


Q ss_pred             hhhcccc--ccchhhhHHHHHhhhhcchhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh
Q 011308          280 ELISPRN--FGVVFIGSTLFALQQLSGINAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL  353 (489)
Q Consensus       280 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~  353 (489)
                      +.++++.  ++......++.    .........+.+.+. +..+.+...   ......+...++.++.+++.||++||+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~  287 (394)
T TIGR00883       212 ETLTKHRKPFLLGLGLVIAT----TTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPV  287 (394)
T ss_pred             HHHHhchHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence            4454443  22222222221    223334445566666 445555544   4445567888999999999999999987


Q ss_pred             HHHHHHHHHHHH-HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHH-HHHHHHH
Q 011308          354 LLGSFLGMAIAM-GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC-MAVHWVI  431 (489)
Q Consensus       354 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g  431 (489)
                      +.....+..+.. ........     ..+.+.......+.+.+.+.. .+....++.|.+|++.|+++.++. +....+|
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g  361 (394)
T TIGR00883       288 LIIFTVLAALLAVPLLMALLD-----SGSFTLFFFLVLGLALIGGMY-TGPMGSFLPELFPTEVRYTGASLAYNLAGAIF  361 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHHHHHH-hhhHHHHHHHhCCccceeeEeeehhHhHHHHH
Confidence            765444333322 22111110     112222333334444444333 345567889999999999999985 4555678


Q ss_pred             HHHHHHHHHHHHHHhc-cchhhHHHHHHH
Q 011308          432 NFFVGLLFLRLLEQLG-PLILYTIFGSFC  459 (489)
Q Consensus       432 ~~~~~~~~g~l~~~~g-~~~~~~~~~~~~  459 (489)
                      ..++|.+.|.+.++.| +...++...+++
T Consensus       362 ~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       362 GGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             hhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            8899999999999988 665555544443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.98  E-value=2e-30  Score=246.19  Aligned_cols=359  Identities=14%  Similarity=0.109  Sum_probs=247.6

Q ss_pred             HHhhhhccccccccchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh
Q 011308           58 ISSFLFGYHLGVVNETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA  136 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  136 (489)
                      ...++.........+.++ .+.+++|++..+.  |++.+.+.+...+.+++.|+++||+|||+++..+.++.+++.+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMV--GIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            444455555555566655 4578889988777  9999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHH
Q 011308          137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATI  216 (489)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~  216 (489)
                      ++++++.+++.|+++|++.+...+...+++.|++|+++|++++++......+|..+||.+++.+. ..+ ||+.|++.++
T Consensus        95 ~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g-~~~~f~~~~~  172 (400)
T PRK11646         95 IAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYD-FRLVCATGAV  172 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh-HHHHHHHHHH
Confidence            99999999999999999998888999999999999999999999999999999999999999998 567 9999999887


Q ss_pred             HHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHH
Q 011308          217 PAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGST  295 (489)
Q Consensus       217 ~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      ..++..+. .++.||.+.    +++                              +++....++++++++.++.......
T Consensus       173 ~~~~~~i~~~~~~~~~~~----~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~  218 (400)
T PRK11646        173 LFVLAAAFNAWLLPAYKL----STV------------------------------RTPVREGMTRVLRDKRFVTYVLTLT  218 (400)
T ss_pred             HHHHHHHHHHHhCCcccc----ccc------------------------------chhhHHHHHHHHcCchHHHHHHHHH
Confidence            76665443 333444210    000                              0001123456667666554333322


Q ss_pred             HHHhhhhcchhHHHHhHHHHHHhcCCCCCchh---HHHHHHHHHHHHHHHHHHh-hhCCchhHHHHHHHHHHHHHHHHHH
Q 011308          296 LFALQQLSGINAVFYFSSTVFKNAGVPSDSGN---ICVGIANLSGSIIAMILMD-KLGRRVLLLGSFLGMAIAMGVQAIA  371 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~~~~~~~~~~  371 (489)
                      .....    ......+.|.+.++.+.+.....   ...++....+....+++.| |++.++.+..+..+..++.+++...
T Consensus       219 ~~~~~----~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~  294 (400)
T PRK11646        219 GYYML----AVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV  294 (400)
T ss_pred             HHHHH----HHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHh
Confidence            22211    11223455666666544444332   2333344444444455554 4665665666666666665544433


Q ss_pred             hhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Q 011308          372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG----  447 (489)
Q Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g----  447 (489)
                      ..        .+.......+++.+.+. ..|...+++.+..|++++|+++|+.+...++|..++|.+.|.+.|..+    
T Consensus       295 ~~--------~~~~~~~~~l~~~g~~~-~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~  365 (400)
T PRK11646        295 SN--------LQQLFTLICLFYIGSII-AEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQ  365 (400)
T ss_pred             hh--------HHHHHHHHHHHHHHHHH-HHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCC
Confidence            21        12222223333333332 234556678899999999999999999999999999999999998753    


Q ss_pred             cchhhHHHHHHHHHHHHHhh
Q 011308          448 PLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ....+...+.+++++.+...
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        366 PELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             cchHHHHHHHHHHHHHHHHH
Confidence            34555555555555554433

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.98  E-value=9.1e-30  Score=240.87  Aligned_cols=359  Identities=13%  Similarity=0.074  Sum_probs=260.9

Q ss_pred             HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHh----hhhhHHHHHH
Q 011308           56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAF----QLCALPMIIG  131 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l----~~~~~~~~i~  131 (489)
                      +.+..+......+...|.+|.+.+|+|.+.++.  |++.+++.+...++++++|+++||+|||+..    ..+..+..+ 
T Consensus         9 l~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~i--g~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~-   85 (382)
T TIGR00902         9 LALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMI--GLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA-   85 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-
Confidence            445566666777888999999999999988888  9999999999999999999999999985433    222222222 


Q ss_pred             HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308          132 ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF  211 (489)
Q Consensus       132 ~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f  211 (489)
                       ..+..+++++.+++.|+++|.+.+...|...++..++  +++|++..+....+.++|.+++|++++.+.+..| ||..|
T Consensus        86 -~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g-~~~~f  161 (382)
T TIGR00902        86 -AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFD-EQNIL  161 (382)
T ss_pred             -HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcC-hhHHH
Confidence             2444678999999999999999888889988887765  5678999999999999999999999999999999 99999


Q ss_pred             HHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchh
Q 011308          212 WVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVF  291 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (489)
                      ++.++...+.. ..+.++|+++   ++++. +                         +++.+...+.++++|+|+++...
T Consensus       162 ~~~~~~~~~~~-~~~~~~~~~~---~~~~~-~-------------------------~~~~~~~~~~~~~l~~~~~~~~l  211 (382)
T TIGR00902       162 AILTAGLAFML-IGFLIKPTIP---PKDAI-P-------------------------EDESQGDSAFIALLKNPMNLRFL  211 (382)
T ss_pred             HHHHHHHHHHH-HHHHcCCCCC---CCccc-c-------------------------ccccccchhHHHHHcChHHHHHH
Confidence            88765533332 2233333321   00000 0                         00011122456788888887776


Q ss_pred             hhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHH
Q 011308          292 IGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQ  368 (489)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~  368 (489)
                      +..++....    ......+.+.++++.|.+....   .....++.+++.++.+++.||+++|+.+..+.+...+....+
T Consensus       212 ~~~~l~~~~----~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~  287 (382)
T TIGR00902       212 AAVCLIQGA----HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAII  287 (382)
T ss_pred             HHHHHHHHH----HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHH
Confidence            665555443    3334445566666777777653   334456777888889999999999999998888888887776


Q ss_pred             HHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Q 011308          369 AIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMA-VHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      .+..+        .+..+....+.+..++.... ....++++. |+++++++.++++. ...+|..++|.+.|.+.|+.|
T Consensus       288 ~~~~~--------~~~~~~~q~l~g~~~~~~~~-~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g  357 (382)
T TIGR00902       288 GAIEA--------FPLIFLLQILHCGTFAVCHL-AAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG  357 (382)
T ss_pred             HhHhh--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            65432        23345556666666665443 345577887 88899999999874 567899999999999999998


Q ss_pred             cchhhHHHHHHHHHHHHHh
Q 011308          448 PLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~  466 (489)
                      + ..|...+++.+++.++.
T Consensus       358 ~-~~~~~~~~~~~~~~~~~  375 (382)
T TIGR00902       358 A-GTFVFMAIIAAAAFFLI  375 (382)
T ss_pred             H-HHHHHHHHHHHHHHHHH
Confidence            6 67888888777665443

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.98  E-value=5.9e-30  Score=243.84  Aligned_cols=350  Identities=16%  Similarity=0.153  Sum_probs=242.9

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      .++.+....+..++..+......+.+|.+.+++|.++++.  +++.+.+.+++.++++++|+++||+|||+++..+.++.
T Consensus         6 ~~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~   83 (394)
T PRK11652          6 NVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGAV--QAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIF   83 (394)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHH
Confidence            3445555555555666777778889999999999998887  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR  208 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr  208 (489)
                      .++.+++.++++++.+++.|++.|++.+...+....+..|.+++++|+++.++.+.+..+|..++|.+++.+.+..+ ||
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g-~~  162 (394)
T PRK11652         84 ILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFG-WR  162 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hH
Confidence            99999999999999999999999999888888888899999999999999999999999999999999999988888 99


Q ss_pred             HHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccc
Q 011308          209 ICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNF  287 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      +.|++.++..++..+. .++.||+++.   +++                              +++....+++.++++.+
T Consensus       163 ~~f~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------------------------~~~~~~~~~~~~~~~~~  209 (394)
T PRK11652        163 ACYLFLLLLGAGVTFSMARWMPETRPA---DAR------------------------------RTRVLASYRTLLSNRRF  209 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCcc---ccc------------------------------hhHHHHHHHHHHcChHH
Confidence            9999988776655443 4456775421   000                              00012334556666666


Q ss_pred             cchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308          288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (489)
                      +......+....    .......+.+.++++ .+.+...   ......++.+++.++.+++.||.+++.  ........+
T Consensus       210 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~--~~~~~~~~~  283 (394)
T PRK11652        210 NCYLLMLIGTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLL  283 (394)
T ss_pred             HHHHHHHHHHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            544433322221    222223333444444 5655544   233344566677777777777776322  222222222


Q ss_pred             HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      +.+.+......   ...+.+.......+.+.+.+. ..|....+..|..| +++|++.++.+....+|+.+++.+.+.+.
T Consensus       284 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~  358 (394)
T PRK11652        284 AGLLMWIPGWF---GVMNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLP  358 (394)
T ss_pred             HHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            22222111110   011222333344444444443 33555556778877 57899999999999999999999988765


Q ss_pred             HH
Q 011308          444 EQ  445 (489)
Q Consensus       444 ~~  445 (489)
                      +.
T Consensus       359 ~~  360 (394)
T PRK11652        359 QT  360 (394)
T ss_pred             CC
Confidence            44

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.97  E-value=6.9e-31  Score=248.02  Aligned_cols=279  Identities=16%  Similarity=0.189  Sum_probs=216.5

Q ss_pred             hhHHHHHHHHhhhhcccccccc-chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           50 LPHVLVAIISSFLFGYHLGVVN-ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      +.++..++..++....+...++ +.+-.+.+|.+....+.  +++.+++.++++++++++|.+.||++..+.+....+.+
T Consensus        44 l~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl~~~~~~l--~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w  121 (495)
T KOG2533|consen   44 LFILPFLCYLYFHAYLDKSSIVNASLSGLKEDLKLVGNQL--GVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILW  121 (495)
T ss_pred             HHHHHHHHHHHHHHhcchhcchhHHHcCCccccchhhhhh--hhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHH
Confidence            4555566667777777765543 34556778988888887  99999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc------c
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK------E  202 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~------~  202 (489)
                      ++..++....+|++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|.+++..+.      .
T Consensus       122 ~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~  201 (495)
T KOG2533|consen  122 GLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGG  201 (495)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCC
Confidence            9999999889999999999999999999999999999999999999999999999999999999999998863      3


Q ss_pred             ccchHHHHHHHhHHHHHHHHHHh-hcccCChh--HHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308          203 ILGWWRICFWVATIPAAFLALFM-EFCAESPH--WLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS  279 (489)
Q Consensus       203 ~~~~Wr~~f~~~~~~~~~~~~~~-~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (489)
                      ..| |||.|++.++++++..++. +++|+.|.  +...+.++.-..+..             ++.......++.+...++
T Consensus       202 ~~g-W~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~-------------~~~~~~~~~~~~~~~~~~  267 (495)
T KOG2533|consen  202 LAG-WRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVVERL-------------RESPSGGIENKFKWKGFK  267 (495)
T ss_pred             cCC-ceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHHHHH-------------HhccCCCcccccCHHHHH
Confidence            445 9999999999998887665 45899886  221111111000000             011111111225667888


Q ss_pred             hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCC---CCCchhHHHHHHHHHHHHHHHHHHhhh
Q 011308          280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGV---PSDSGNICVGIANLSGSIIAMILMDKL  348 (489)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~  348 (489)
                      +.++++..|...+..++....    .+.+.+++|.++++ .++   ++..+.++..++++++.+++|+++||.
T Consensus       268 ~a~~dp~vw~~~l~~~~~~lv----~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~  336 (495)
T KOG2533|consen  268 EALKDPGVWPFSLCYFFLKLV----NYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRL  336 (495)
T ss_pred             HHHhchhHHHHHHHHHHHhhc----cccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHH
Confidence            999999999887777766664    44455566666655 223   344488889999999999999999995

>TIGR00896 CynX cyanate transporter

Probab=99.97  E-value=8.3e-30  Score=239.28  Aligned_cols=332  Identities=15%  Similarity=0.109  Sum_probs=236.3

Q ss_pred             cccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHH
Q 011308           65 YHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGM  144 (489)
Q Consensus        65 ~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l  144 (489)
                      ......++.+|.+.+|+|.+.++.  |++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+.+ .+++++.+
T Consensus        14 ~~~~~~~~~lp~l~~~~~~s~~~~--g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l   90 (355)
T TIGR00896        14 PALTSVGPLLPQIRSALGMSFSVA--GLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTALL   90 (355)
T ss_pred             CccccCcccHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHHHH
Confidence            334567889999999999998887  999999999999999999999999999999999999888888877 77899999


Q ss_pred             HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHHHH
Q 011308          145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFLAL  223 (489)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~~~  223 (489)
                      ++.|++.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+..+. ||+.|...++..++...
T Consensus        91 ~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~  169 (355)
T TIGR00896        91 FAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALL  169 (355)
T ss_pred             HHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            999999999999888888888999986 6899999999999999999999998888776543 99998877655443322


Q ss_pred             HhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308          224 FMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS  303 (489)
Q Consensus       224 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
                        .++|+.++    +.+                            ++++......++++|++.++...+...+...    
T Consensus       170 --~~~~~~~~----~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  211 (355)
T TIGR00896       170 --AWIPQVRR----RVA----------------------------ANQTTTRLTPVRIWRSPLAWQVTVFFGLQSG----  211 (355)
T ss_pred             --HHhhhhcc----ccC----------------------------CCCCCCCCCCchhhcCHhHHHHHHHHHHHHH----
Confidence              22333221    000                            0000011223456666666544333333222    


Q ss_pred             chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLG-RRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      .+.....++|.++++.+.+...   ......++.++++++.|++.||++ ||+.+..+..+..++.+.+.+....     
T Consensus       212 ~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  286 (355)
T TIGR00896       212 LYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMH-----  286 (355)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhh-----
Confidence            2334445667777766766544   555667889999999999999995 5666666666666665555443211     


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhc-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLS-EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGP  448 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~  448 (489)
                       .   ......+++.+.+.. .+....... +..++++++...++.+...+++..++|.+.|.+.|+.|.
T Consensus       287 -~---~~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~  351 (355)
T TIGR00896       287 -G---LWAWALVLGLGQGGA-FPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGN  351 (355)
T ss_pred             -H---HHHHHHHHHHhhhhH-hHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             1   111233344443322 233333343 444567789999999999999999999999999998873

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00889 2A0110 nucleoside transporter

Probab=99.97  E-value=1.5e-29  Score=241.00  Aligned_cols=374  Identities=14%  Similarity=0.122  Sum_probs=252.1

Q ss_pred             HHHhhhhccccccc-cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCc-hhHhhhhhHHHHHHHHH
Q 011308           57 IISSFLFGYHLGVV-NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGR-RRAFQLCALPMIIGASM  134 (489)
Q Consensus        57 ~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~~~~~~i~~~~  134 (489)
                      ++..+..+...... ++..+.+.+++|.+.++.  |++.+++.++..++++++|+++||+|| |+++.++.++.+++..+
T Consensus         8 ~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~i--Gl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~   85 (418)
T TIGR00889         8 KFMSFLQWFIWGSWLVTLGSYMSKTLHFSGAEI--GWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFF   85 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            34445555555555 445566677899988887  999999999999999999999999965 77888888888888888


Q ss_pred             HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhc--------CCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          135 SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV--------SPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       135 ~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~--------~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      ..+.++++.+++.|++.|++.+...+...++..++        .....|.+..|      .+|.++++.+++.+..... 
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~-  158 (418)
T TIGR00889        86 AAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELS-  158 (418)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccch-
Confidence            88999999999999999998877777666554222        22233444444      3577777777776643333 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308          207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN  286 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      |+ +|++.++..++..+..+++||+|+.   +++++.                         ..++....+.++++|++.
T Consensus       159 ~~-~f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~-------------------------~~~~~~~~~~~~~~k~~~  209 (418)
T TIGR00889       159 NI-QLYITAGSSALLGVFALTLPDIPVA---KSTAKM-------------------------SIKVMLGLDAFILFKNKR  209 (418)
T ss_pred             hH-HHHHHHHHHHHHHHHHhcCCCCCCC---cccccc-------------------------CHHHHhhhhHHHHhcCCC
Confidence            55 3555565555555555667887531   100000                         000001123455778888


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCC--------C---chhHHHHHHHHHHHHHHHHHHhhhCCchhHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS--------D---SGNICVGIANLSGSIIAMILMDKLGRRVLLL  355 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~  355 (489)
                      ++..++..++....    ......+.+.+.++.+.+.        .   .......+..+++.+..+++.||+++|+.+.
T Consensus       210 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~  285 (418)
T TIGR00889       210 MAIFFFFSMLLGAP----LQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVML  285 (418)
T ss_pred             eeeHHHHHHHHHhH----HHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            77666655554332    2233344555555544332        2   2445555677888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHH-HHHHHHHHH
Q 011308          356 GSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCM-AVHWVINFF  434 (489)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~  434 (489)
                      .+.++..++..++......    ....+..+....+.+.+.+.. .+....++.|.+|++.|++++|+.+ ....+|..+
T Consensus       286 ~~~~~~~v~~~l~~~~~~~----~~~~~~l~l~~~l~g~~~~~~-~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~i  360 (418)
T TIGR00889       286 LSLVAWALRFGFFAYGDPE----YFGYALLFLSMIVYGCAFDFF-NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLL  360 (418)
T ss_pred             HHHHHHHHHHHHHHHcCcc----hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHH
Confidence            8888777766555442110    011122333344444444432 3454567899999999999999997 567899999


Q ss_pred             HHHHHHHHHHHh------ccchhhHHHHHHHHHHHHHhhhcccCCCCCC
Q 011308          435 VGLLFLRLLEQL------GPLILYTIFGSFCFLAVIYVKRNVMETKGKT  477 (489)
Q Consensus       435 ~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (489)
                      +|.+.|.+.|..      ||+..|.+.+++.+++.++.+++.+|++++-
T Consensus       361 Gp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~~  409 (418)
T TIGR00889       361 GYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNAI  409 (418)
T ss_pred             HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence            999999999984      4788898888888888888887788776543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.97  E-value=2e-29  Score=239.43  Aligned_cols=358  Identities=14%  Similarity=0.132  Sum_probs=231.4

Q ss_pred             HHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHH-HHHHHHHHHHHhhcccCchhHh-hhhhHHHHHHHH
Q 011308           57 IISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLG-GAFVGSMFSGWIADGIGRRRAF-QLCALPMIIGAS  133 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l-~~~~~~~~i~~~  133 (489)
                      .+..++.........|.+|. +.+|+|.+.++.  |++.+...+ ++.++++++++ +||+||||.+ ..+.++.+++..
T Consensus        21 ~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~   97 (393)
T PRK15011         21 LIVAFLTGIAGALQTPTLSIFLTDEVHARPAMV--GFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACT   97 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHH
Confidence            33456666666667777765 578899988877  998776655 66666655666 9999999875 556676778888


Q ss_pred             HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccch--hhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHH
Q 011308          134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVR--GAYGSSTQIAACLGILVALFVGLPAKEILGWWRICF  211 (489)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f  211 (489)
                      +.+++++++.+++.+.+.|...+...|....++.|+.++++|  +...++.+.+.++|.+++|++++.+.+..| ||..|
T Consensus        98 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~g-w~~~f  176 (393)
T PRK15011         98 LFAWNRNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFS-FTVMY  176 (393)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcC-hHHHH
Confidence            888999999887665555444467788888888988876655  345578888999999999999999998888 99999


Q ss_pred             HHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc-ccccc
Q 011308          212 WVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP-RNFGV  289 (489)
Q Consensus       212 ~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  289 (489)
                      ++.++..++..+.. +++||+++.   +++.+                          ++.+       ...++ +..+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--------------------------~~~~-------~~~~~~~~~~~  220 (393)
T PRK15011        177 LSAAVAFIVCGVMVWLFLPSMRKE---LPLAT--------------------------GTLE-------APRRNRRDTLL  220 (393)
T ss_pred             HHHHHHHHHHHHHHHhhcCccCCC---Ccccc--------------------------cccc-------ccccccccHHH
Confidence            99888776665554 447776420   00000                          0000       00011 11111


Q ss_pred             hhhhHHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 011308          290 VFIGSTLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAM  365 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  365 (489)
                      .+........    .......+.|.+++ ..+.+...   ......+..+++.++.|+++||+++|+.+..+.....+..
T Consensus       221 ~~~~~~~~~~----~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~  296 (393)
T PRK15011        221 LFVICTLMWG----TNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFY  296 (393)
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            1111111111    22223344555553 35555444   2333345567788999999999999987766655444433


Q ss_pred             HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  445 (489)
                      ..+....        +.+..+....+.+...+... +....+..|..|+ +++++.++++...++|..++|.+.|.+.+.
T Consensus       297 ~~~~~~~--------~~~~~l~~~~l~~~~~g~~~-~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~  366 (393)
T PRK15011        297 AGMLMAH--------SPAILLGLQLLNAIYIGILG-GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI  366 (393)
T ss_pred             HHHHHHh--------hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2222111        11222222222222222221 1234467788885 599999999999999999999999999999


Q ss_pred             hccchhhHHHHHHHHHHHHHhhh
Q 011308          446 LGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       446 ~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .|++..+.+.+++++++.+..++
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~~~~  389 (393)
T PRK15011        367 WNYHAVFWFALVMIIATLFCLLR  389 (393)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHh
Confidence            99998888877777776665553

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.97  E-value=4.9e-29  Score=239.30  Aligned_cols=375  Identities=16%  Similarity=0.110  Sum_probs=236.7

Q ss_pred             Hhhhhccccccccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh-
Q 011308           59 SSFLFGYHLGVVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA-  136 (489)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~-  136 (489)
                      ..++..+..+...+.+|.+. +++|++..+.  |++.+++.+++.++++++|+++||+|||++++.+..+.+++..... 
T Consensus        18 ~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~   95 (420)
T PRK09528         18 FFFFFFFIWSSWFSFFPIWLHDINGLSGTDT--GIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFI   95 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            44444444455666666554 4589988877  9999999999999999999999999999999887666555433221 


Q ss_pred             --hhh-----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          137 --ITK-----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       137 --~~~-----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                        .++     .....++++++.|.+.....+....+..+.  .+++++.++......++|..+++.+++.+.+. + |++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-~-~~~  171 (420)
T PRK09528         96 YVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV--SRRSGFEYGRARMWGSLGWALCAFIAGILFNI-N-PQI  171 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH--HhhccccchhhHHhhhHHHHHHHHHHHHHHhc-C-chH
Confidence              111     111122334444443333333333333222  34567788888888999999999999988764 5 899


Q ss_pred             HHHHhHHHHHHHHHHhhccc-CChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccccc
Q 011308          210 CFWVATIPAAFLALFMEFCA-ESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFG  288 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (489)
                      .|++.++..++..+..++.+ |+++. ..+ + ++                      +.+++++......++.+|++.++
T Consensus       172 ~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~-~~----------------------~~~~~~~~~~~~~~~~l~~~~~~  226 (420)
T PRK09528        172 NFWLGSGSALILLVLLFFAKPDAPST-AKV-A-NA----------------------LGANASAVSLKDALALLKLPKFW  226 (420)
T ss_pred             hHHHHHHHHHHHHHHHhcccccccch-hhh-c-cc----------------------hhcccccccHHHHHHHccCCCeE
Confidence            99998888777666655543 33220 000 0 00                      00000111223355677888777


Q ss_pred             chhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHH
Q 011308          289 VVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAM  365 (489)
Q Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~  365 (489)
                      ...+................+.|......+.+.+...   ......+...++.++.|++.||+++|+.+..+..+..++.
T Consensus       227 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~  306 (420)
T PRK09528        227 FLVLYVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRI  306 (420)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHH
Confidence            6554443333322222233445554444433444333   3444556777899999999999999999888777777766


Q ss_pred             HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 011308          366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV-CMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      .++.+..+        .+..+....+.+...+.. .+....++.|.+|++.+++..+. .+....+|..++|.+.|.+.|
T Consensus       307 ~l~~~~~~--------~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~  377 (420)
T PRK09528        307 IGSGFATG--------PLEVSILKLLHAFEVPFL-LVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD  377 (420)
T ss_pred             HHHHhccc--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH
Confidence            65544321        222333333333333222 12334567788898988888766 677889999999999999999


Q ss_pred             HhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          445 QLGPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      ..||+..|.+.+++.++..++.+...++.
T Consensus       378 ~~G~~~~f~~~~~~~~i~~~~~~~~~~~~  406 (420)
T PRK09528        378 SIGFQGTYLILGGIVLLFTLISVFTLSGD  406 (420)
T ss_pred             hhCchHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999998888877776666554443

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.97  E-value=7.2e-30  Score=241.23  Aligned_cols=343  Identities=20%  Similarity=0.166  Sum_probs=230.5

Q ss_pred             HHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      ..+++.+..........+..|. +++++|++..+.  +++.+.+.+++.+++++.|+++||+|||+++..+.++..++.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~   82 (366)
T TIGR00886         5 FSWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQL--GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCL   82 (366)
T ss_pred             HHHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHh--hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence            4556666667777788999995 999999998887  9999999999999999999999999999999999999999999


Q ss_pred             HHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc----------
Q 011308          134 MSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE----------  202 (489)
Q Consensus       134 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~----------  202 (489)
                      ++++++ +++.+++.|+++|++.+. .+....++.|++|+++|++++++.....++|..+++.+++.+..          
T Consensus        83 ~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~  161 (366)
T TIGR00886        83 WAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPA  161 (366)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            999999 999999999999998654 56678899999999999999999997777777777777665543          


Q ss_pred             ccchHHHHH-HHhHHHHHHHHH-HhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHh
Q 011308          203 ILGWWRICF-WVATIPAAFLAL-FMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSE  280 (489)
Q Consensus       203 ~~~~Wr~~f-~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (489)
                      ..+ ||+.| +..++...+..+ ...+.+|+|+.   +++.++.+.  +   +.           . ...+++.....++
T Consensus       162 ~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~---~~-----------~-~~~~~~~~~~~~~  220 (366)
T TIGR00886       162 HLA-WGWAFVIVPAGILLLPALLIFFVGADTPPG---KPATGKLSF--K---GA-----------R-WSVGTGALGDQLK  220 (366)
T ss_pred             ccc-ccchhHHHHHHHHHHHHHHHHHhcccCCcc---cccchhccc--c---cc-----------c-ccccchhHHHHHH
Confidence            235 99999 443444443333 33445665531   110000000  0   00           0 0000111124456


Q ss_pred             hhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 011308          281 LISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLG  356 (489)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  356 (489)
                      .++++.++...+...+....    ......+.+.++++ .+.+...   ......+..++++++.|++.||+++|+....
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~  296 (366)
T TIGR00886       221 VFRDRHTWILALLYSVTFGS----FLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLM  296 (366)
T ss_pred             HHhccchhhHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHH
Confidence            67777776555544443332    22333444545543 4555443   4455667788999999999999999887776


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH
Q 011308          357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI  431 (489)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g  431 (489)
                      +......+..++.+....    ..+.+.......+.....+.+.. ..+.+..+..| +++|+++|+.+...++|
T Consensus       297 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~-~~~g~~~g~~~~~~~~g  365 (366)
T TIGR00886       297 SFLGVAMGAFLVVLGLVS----PLSLAVFIVLFVALFFFSGAGNG-STFALVPHIFR-RATGAVSGLVGAIGNLG  365 (366)
T ss_pred             HHHHHHHHHHHHHhcCCC----cchHHHHHHHHHHHHHHhccccc-hhhhcchhhch-hhcccHHHHHHHhccCC
Confidence            666555554444332210    00222233333344444444333 44556778877 67999999999988765

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.97  E-value=3.4e-28  Score=230.24  Aligned_cols=355  Identities=14%  Similarity=0.114  Sum_probs=246.1

Q ss_pred             hhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch----hHhhhhhHHHHHHHHHH
Q 011308           60 SFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR----RAFQLCALPMIIGASMS  135 (489)
Q Consensus        60 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr----~~l~~~~~~~~i~~~~~  135 (489)
                      ++......+...|.+|.+.+|+|.+.++.  |++.+++.++..++++++|+++||+|||    +.+.++..+.  .....
T Consensus        13 ~~~~~~~~g~~~p~l~~~l~~~g~s~~~i--G~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~   88 (382)
T PRK11128         13 YFGYFFAYGVFLPFWSVWLKGQGYTPETI--GLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFW   88 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHhcCCCHHHH--HHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHH
Confidence            34444556778999999999999988887  9999999999999999999999999994    3333222222  22333


Q ss_pred             hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308          136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT  215 (489)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~  215 (489)
                      ..+++++.+++.|++.|++.+...+...+++.++  +++|+++.+......++|.++||++++.+.++.+ ||..|++.+
T Consensus        89 ~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g-~~~~f~~~~  165 (382)
T PRK11128         89 FGAHSFWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFG-EQAILWILT  165 (382)
T ss_pred             HhcccHHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcC-hhHHHHHHH
Confidence            4468899999999999999888888888888876  4567888888999999999999999999999988 999999877


Q ss_pred             HHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHH
Q 011308          216 IPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGST  295 (489)
Q Consensus       216 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (489)
                      +..++..+...+.||+++    +++.                          +++.++...++++++|++.++......+
T Consensus       166 ~~~~~~~~~~~~~~~~~~----~~~~--------------------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~  215 (382)
T PRK11128        166 AGVASMLLGQLLRPTIMP----QGES--------------------------RQQESAGWPAWKALLKEPTVWRFLLCVS  215 (382)
T ss_pred             HHHHHHHHHHHccCCCCC----cccc--------------------------ccccccccchHHHHHcChhHHHHHHHHH
Confidence            655544443333444321    0000                          0000111235678888888877666555


Q ss_pred             HHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308          296 LFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA  372 (489)
Q Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      +.....    .....+.+.+.++.|.+...   ......+..++..++.+++.||+++|+.+..+.+..+++.+++....
T Consensus       216 l~~~~~----~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~  291 (382)
T PRK11128        216 LLQGSH----AAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT  291 (382)
T ss_pred             HHHHHh----HhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence            544432    22333445555666776655   33344466677778899999999999998888877777665544322


Q ss_pred             hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccchh
Q 011308          373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAV-HWVINFFVGLLFLRLLEQLGPLIL  451 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g~~~~  451 (489)
                              +.+..+....+.+.+++.. .+....+..+. +++++++..++.+.. ..+|..++|.+.|.+.|..|+ ..
T Consensus       292 --------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~  360 (382)
T PRK11128        292 --------ALPWLIVIQILHCGTFTVC-HLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GV  360 (382)
T ss_pred             --------hHHHHHHHHHHHHHHHHHH-HHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HH
Confidence                    2233444555555555543 23444466666 556678999988744 566779999999999999887 46


Q ss_pred             hHHHHHHHHHHHHHh
Q 011308          452 YTIFGSFCFLAVIYV  466 (489)
Q Consensus       452 ~~~~~~~~~~~~~~~  466 (489)
                      ++..+++.+++.++.
T Consensus       361 ~~~~~~~~~~~~~~~  375 (382)
T PRK11128        361 FWVMALVALPALFIR  375 (382)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            666666666554443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.97  E-value=2.8e-28  Score=232.47  Aligned_cols=366  Identities=18%  Similarity=0.113  Sum_probs=251.9

Q ss_pred             HHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----Cchh-HhhhhhHHHHH
Q 011308           57 IISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRR-AFQLCALPMII  130 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~-~l~~~~~~~~i  130 (489)
                      ...++..+.........+|.+.++.|++.++.  |++..+...  .+.++++|+++||+     |||| .+..+.++.++
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~i--g~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l   80 (402)
T PRK11902          5 LLLGFASGLPLALTSGTLQAWMTVEGLDIQTI--GFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAA   80 (402)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHH
Confidence            34556677778888889999999999999888  998777765  58899999999999     8876 78888888888


Q ss_pred             HHHHHhhh---hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-cch
Q 011308          131 GASMSAIT---KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-LGW  206 (489)
Q Consensus       131 ~~~~~~~~---~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~~~  206 (489)
                      +..+.++.   .+++.+++..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+. .+ 
T Consensus        81 ~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~g-  159 (402)
T PRK11902         81 SIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLG-  159 (402)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccC-
Confidence            87777776   45778888888888888889999999999999999999999999999999999999999888875 46 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308          207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN  286 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      ||..|++.++..++..+..++.||+++.   ++++++.                          +++....+++++++|.
T Consensus       160 w~~~f~i~a~~~l~~~l~~~~~~e~~~~---~~~~~~~--------------------------~~~~~~~~~~l~~~~~  210 (402)
T PRK11902        160 WGNTYLLMAGLMLAGALTTLWAPEPEVP---ARPPRSL--------------------------GEAVVGPLRDFFSRRG  210 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCccc---ccccchh--------------------------HHHHHHHHHHHHhCcC
Confidence            9999999888776665555556765431   1000000                          0012234667888888


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHH---H-HHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICV---G-IANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      ++..+...++.........   ....+.+.++.|.+........   + ++.+++.++.+++.||+++|+.+..+..+..
T Consensus       211 ~~~~l~~~~l~~~~~~~~~---~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~  287 (402)
T PRK11902        211 AWALLLLIVLYKLGDAFAG---SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQA  287 (402)
T ss_pred             HHHHHHHHHHHHhHHHHHH---HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            7766655444443222111   1222334455677766543333   2 3467899999999999999888776666555


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHH----HHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLL----FVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  438 (489)
                      +..+.+......    ..+.+.......+    .+...+ ...+....++++.+|.+.    .++.+....++..+++.+
T Consensus       288 l~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~  358 (402)
T PRK11902        288 VSNLGYWVLAVT----PKHLWTMALAIGIENLCGGMGTA-AFVALLMALCNRSFSATQ----YALLSALASVGRVYVGPT  358 (402)
T ss_pred             HHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCCcHHH----HHHHHHHHHHHHHHHHHH
Confidence            444333222111    0112222222221    111111 122344556667766554    455666667777777788


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .|.+.|..|+...|.+.+++++++.++.+.
T Consensus       359 ~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~  388 (402)
T PRK11902        359 SGYLVEAYGWPGFYLMTVVIALPGLALLWL  388 (402)
T ss_pred             HHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988888887666543

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=2.7e-30  Score=226.22  Aligned_cols=346  Identities=15%  Similarity=0.083  Sum_probs=248.2

Q ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhH
Q 011308           83 FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVA  162 (489)
Q Consensus        83 ~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~  162 (489)
                      .+.++.+.|++.+++.+.+.+.+++.|.+.||+|+|..+++|++.+..+++++++.+++++++++|.+||+|.+...+..
T Consensus       101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsg  180 (464)
T KOG3764|consen  101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSG  180 (464)
T ss_pred             ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhh
Confidence            33444556999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCcc-chhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCCh
Q 011308          163 ALYVSEVSPAY-VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRG  241 (489)
Q Consensus       163 ~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~  241 (489)
                      .++++|.+|++ +|++++|+.-.+.++|..+||++||.+.+..| .+.+|++.+++.++-..+.+++-|+.+        
T Consensus       181 lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~G-k~aPFlVL~~v~Lld~~L~l~vi~p~~--------  251 (464)
T KOG3764|consen  181 LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAG-KSAPFLVLAIVLLLDGALQLLVIEPTE--------  251 (464)
T ss_pred             HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcC-CcCcHHHHHHHHHHHHHHHHheeCccc--------
Confidence            99999999865 57999999999999999999999999999999 899999999998888777666443321        


Q ss_pred             HHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCC
Q 011308          242 AEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGV  321 (489)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (489)
                                               .+++...+..+++++++++..+................--.++.|...-+...++
T Consensus       252 -------------------------~~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w  306 (464)
T KOG3764|consen  252 -------------------------MDPDSTEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGW  306 (464)
T ss_pred             -------------------------cCccccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCc
Confidence                                     0011223344577788888776554443333322111222222222222222333


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhhCCchhH--HHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcC
Q 011308          322 PSDSGNICVGIANLSGSIIAMILMDKLGRRVLL--LGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLG  399 (489)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (489)
                      ..+......++...++..+.|.+.||++..+.+  ..+.+..+.......+....     ...++......+.+......
T Consensus       307 ~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~-----~~L~vp~~~l~~~i~~~das  381 (464)
T KOG3764|consen  307 EVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSI-----AQLWVPNFGLGFGIGLADAS  381 (464)
T ss_pred             ceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhH-----HHHhhhhHHHHHHHHHHHHH
Confidence            445577778889999999999999999943332  33333333333222222211     11222222222322223333


Q ss_pred             CCcchhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          400 AGPVPSLLLSEIFPNR---IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       400 ~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ..|... +..|....+   ..|...++......+|.++||.++|.+++..|+.+...+.+...++-.-++.+
T Consensus       382 l~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~l  452 (464)
T KOG3764|consen  382 LIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLL  452 (464)
T ss_pred             HhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 334443434   67999999999999999999999999999999998888888887776655443

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.96  E-value=3.5e-29  Score=239.24  Aligned_cols=404  Identities=16%  Similarity=0.148  Sum_probs=287.8

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA  125 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  125 (489)
                      ..+.|.+.+..++......-....++...+.++++++.+.++.  +|+.++....+.+..++.+.+.||||.|++.+.|.
T Consensus        41 GG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f~~s~~~~--~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~  118 (509)
T KOG2504|consen   41 GGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYFGSSSSQI--AWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGG  118 (509)
T ss_pred             CCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHhCCCccHH--HHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHH
Confidence            3456766666666666665556667788999999999988886  99999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHH-HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          126 LPMIIGASMSAITKNLWGMLLG-RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~-r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      ++.+++.++.++++++|++++. -++.|+|.|..+.....++..+| +++|+.+.|+...+.++|.++-|.+...+.+..
T Consensus       119 ~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~  197 (509)
T KOG2504|consen  119 LVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKY  197 (509)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHh
Confidence            9999999999999999998885 68999999999999999999887 677999999999999999999999999999999


Q ss_pred             chHHHHHHHhHHHHHHHHHHhhcccC-ChhHHHhcCChHHHHH---HHH--------HHhCCC-Cch----HHHHHHhhh
Q 011308          205 GWWRICFWVATIPAAFLALFMEFCAE-SPHWLFKRGRGAEAEA---ELE--------RLFGGL-HVK----YSMAELSKS  267 (489)
Q Consensus       205 ~~Wr~~f~~~~~~~~~~~~~~~~~~e-~~~~~~~~~~~~~~~~---~~~--------~~~~~~-~~~----~~~~~~~~~  267 (489)
                      | ||+.+++.+.+.+-..+.....++ +++..  ++..++.+.   ..+        ...... ...    .......+.
T Consensus       198 G-~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (509)
T KOG2504|consen  198 G-WRGALLIFGGISLNVLVAGALLRPLSPPKK--PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRG  274 (509)
T ss_pred             C-cHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhC
Confidence            9 999999988887666555444333 22100  000000000   000        000000 000    000011111


Q ss_pred             hhccc--hhhhhH----HhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHH
Q 011308          268 ERGDE--ADAVKF----SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGS  338 (489)
Q Consensus       268 ~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  338 (489)
                      +.+..  ..+...    .++++++.++...+...+..+    ++.....+++.+.+..+.+...   ...+.++..++++
T Consensus       275 ~~~~~~~~~~~~~~~~d~~ll~~~~fl~~~~~~~~~~~----g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gR  350 (509)
T KOG2504|consen  275 PDKWRNSPLQAFLSMLDLSLLKDPKFLLLALSNLFAYL----GFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGR  350 (509)
T ss_pred             CccccccchhhhhhhhhHHHHcCchHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhh
Confidence            11111  111222    577888777655555544444    5667777888888888877665   6667788999999


Q ss_pred             HHHHHHHhhhCCch--hHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhh
Q 011308          339 IIAMILMDKLGRRV--LLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRI  416 (489)
Q Consensus       339 ~~~g~l~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  416 (489)
                      ++.|++.|+...++  ....+.+..+++.+...+...        .+......++++...+. ........+.|+.+.++
T Consensus       351 i~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~~~~--------~~~l~~~~~~fG~~~g~-~~~l~~~i~~~~~g~~~  421 (509)
T KOG2504|consen  351 IILGLLADKPGIRALVLFLLTLLIAGLARLFLPFATT--------YVGLIVFSILFGFCVGS-FSSLTPVILVDLVGLEK  421 (509)
T ss_pred             hhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcChhh
Confidence            99999999988433  344445555555433333322        22333444444444332 23344457889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHhhh
Q 011308          417 RAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       417 ~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      -..+.|+...+..++..+||++.|.+.|..| |...|...+.+.+++..+.+.
T Consensus       422 l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  422 LSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             cchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999999999999999999988 888888888887777755543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.96  E-value=7.3e-28  Score=232.44  Aligned_cols=408  Identities=11%  Similarity=0.045  Sum_probs=250.9

Q ss_pred             hHHHHHHHHhhhhccccccccchh-hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHH
Q 011308           51 PHVLVAIISSFLFGYHLGVVNETL-ESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPM  128 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~  128 (489)
                      +.+..+++..+...+......+.+ ..+.+++|.+.++.  +++.+.+.....+..+++|+++|| +||||+++.+.+++
T Consensus        14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a--~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~   91 (489)
T PRK10207         14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA--FITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVL   91 (489)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHH
Confidence            334455555566666655554444 45577899887777  899999998888889999999999 99999999999999


Q ss_pred             HHHHHHHhhhhhHHH-HHHHHHHHhhcccchhhhHHHHHHhcCCcc--chhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          129 IIGASMSAITKNLWG-MLLGRLFVGTGMGIGPAVAALYVSEVSPAY--VRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~-l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ++++++++++.+... ++++|+++|+|.|...+...+++.|.+|++  +|++++++++.+.++|..+||.+++++.+..|
T Consensus        92 ~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g  171 (489)
T PRK10207         92 AIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG  171 (489)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999876554 457999999999999999999999999877  45789999999999999999999999999998


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhcccCChhHHH--hcCChHHHHHHHHH------------HhCCCCchHHH--HH------
Q 011308          206 WWRICFWVATIPAAFLALFMEFCAESPHWLF--KRGRGAEAEAELER------------LFGGLHVKYSM--AE------  263 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~------  263 (489)
                       ||+.|++.++..++..+...+.++..+...  .++++.|.......            ...........  ..      
T Consensus       172 -w~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  250 (489)
T PRK10207        172 -YSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVT  250 (489)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence             999999965543333333333332111000  00111111111000            00000000000  00      


Q ss_pred             --HhhhhhccchhhhhHHhhhccccccchhhh--HHHHHhhhhcchhHHHHhHHHHHHh--cCCC--CCchhHHHHHHHH
Q 011308          264 --LSKSERGDEADAVKFSELISPRNFGVVFIG--STLFALQQLSGINAVFYFSSTVFKN--AGVP--SDSGNICVGIANL  335 (489)
Q Consensus       264 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~~~  335 (489)
                        ....+. +.      .+.+|+|.+....+.  ..+++..........+.+.+...+.  .|..  +.....+..+..+
T Consensus       251 ~~f~~~~~-~~------~~~~r~r~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~ii  323 (489)
T PRK10207        251 IIFFREAF-KL------DKTGRNKMFVAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVV  323 (489)
T ss_pred             HHHHHHHh-cC------CHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHH
Confidence              000000 00      123343433222211  2222222222333344444322221  1221  1223334446666


Q ss_pred             HHHHHHHHHHhhhCCchh-------HHHHHHHHHHHHHHHHHHhhccc--CCCcchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308          336 SGSIIAMILMDKLGRRVL-------LLGSFLGMAIAMGVQAIAATSFV--SSSGALSLSLGGMLLFVLTFSLGAGPVPSL  406 (489)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (489)
                      +..++.+++.||+++|+.       +..+.++.+++++.+........  ....+.++.+....+.+.+.... .+....
T Consensus       324 i~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~-~~~g~~  402 (489)
T PRK10207        324 VASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFI-SALGLA  402 (489)
T ss_pred             HHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHH-hHHHHH
Confidence            788888999999998863       56677776666654432211111  11233454555555555555543 445556


Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HhccchhhHHHHHHHHHHHHHhhhc
Q 011308          407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE----------QLGPLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       407 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      ++.+..|++.+|.++|+.+...++|+.++..+......          ...+...|...++.++++.++++..
T Consensus       403 ~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        403 MIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788899999999999999999999999888764421          1124566777777766666655543

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.96  E-value=1.4e-27  Score=227.45  Aligned_cols=373  Identities=15%  Similarity=0.122  Sum_probs=244.3

Q ss_pred             HHHHHhhhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      .+....++.......+.|.+|.+ .+++|.+..+.  |++.+.+.+++.+++++.|+++||+|||+.++.+....+++..
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~   83 (396)
T TIGR00882         6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDT--GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFA   83 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence            34445556666666777787765 45689888777  9999999999999999999999999999999887766655443


Q ss_pred             HH---hhh-----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          134 MS---AIT-----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       134 ~~---~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ..   .+.     +.+..+.+.|++.|++.+...+....+..|..  +++++..+......++|.++++.+++.+.+. +
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~  160 (396)
T TIGR00882        84 PFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSI-D  160 (396)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhcc-C
Confidence            22   111     22344566789999998888888888877753  2345666777788889999999999988764 6


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308          206 WWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP  284 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                       ||++|++.++..++..+..++ .+|+|+.   + +.++                     ..+.++++++..+.++++|+
T Consensus       161 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~---------------------~~~~~~~~~~~~~~~~~l~~  214 (396)
T TIGR00882       161 -PQIVFWLGSGFALILMLLLMFAKPKAPSS---A-TVAN---------------------ALGANASAFSLKLALELFRQ  214 (396)
T ss_pred             -chHHHHHHHHHHHHHHHHHHHhCCCCchh---h-hhhc---------------------ccccccCCCCHHHHHHHHcC
Confidence             999999988887776655544 3443320   0 0000                     00000111223356778888


Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM  361 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (489)
                      +.++...+..+.............+.|.+.+.+..+.+...   ......+...++.+..+++.||+++|+.+..+..+.
T Consensus       215 ~~~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~  294 (396)
T TIGR00882       215 RKFWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIM  294 (396)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            87765544433332222122223444444444322333322   344445667778889999999999999988877777


Q ss_pred             HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHH
Q 011308          362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV-CMAVHWVINFFVGLLFL  440 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g  440 (489)
                      ++...+.....        +.+..+....+.+.+..... .....+..+..|++.++++.+. .+....+|+.+++.+.|
T Consensus       295 ~l~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G  365 (396)
T TIGR00882       295 SVRIIGSSFAT--------TALEVVILKMLHAFEVPFLL-VGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAG  365 (396)
T ss_pred             HHHHHHHHhcC--------ChHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHH
Confidence            66655433321        12223333333333332211 1223355666777777777766 67889999999999999


Q ss_pred             HHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308          441 RLLEQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       441 ~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      .+.|..|+...|.+.+++.++..++..
T Consensus       366 ~l~~~~G~~~~f~~~~~~~~i~~~~~~  392 (396)
T TIGR00882       366 NMYDSIGFQGAYLVLGCIVLLFTLISV  392 (396)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998888877766543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.96  E-value=1e-27  Score=259.05  Aligned_cols=356  Identities=14%  Similarity=0.007  Sum_probs=239.8

Q ss_pred             ccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh---hhhhHHHHHH
Q 011308           70 VNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA---ITKNLWGMLL  146 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~  146 (489)
                      .....+.+..+++.+.+....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++..   .+++++.+++
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~  108 (1146)
T PRK08633         29 KILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFA  108 (1146)
T ss_pred             HHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH
Confidence            3445556666777766665569999999999999999999999999999999998877666555443   4578999999


Q ss_pred             HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc--------cchHHHHHHHhHHHH
Q 011308          147 GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI--------LGWWRICFWVATIPA  218 (489)
Q Consensus       147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--------~~~Wr~~f~~~~~~~  218 (489)
                      +|+++|++.+...++..+++.|++|+++|++++++.+.+..+|.++|+.+++++.+.        .++|++.+.+..+..
T Consensus       109 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (1146)
T PRK08633        109 VTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAV  188 (1146)
T ss_pred             HHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998875        333555554444333


Q ss_pred             H-HHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHH
Q 011308          219 A-FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLF  297 (489)
Q Consensus       219 ~-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (489)
                      . +.+++.+.+||+++....+.+.+                        ...........++.+++++.++..++..++.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  244 (1146)
T PRK08633        189 AVLGLIFAYRLPKVPAAAPEVFDKK------------------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYF  244 (1146)
T ss_pred             HHHHHHHHhcCcCCCCCCccccccc------------------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            3 33334455677653211100000                        0000011123456677777766555544444


Q ss_pred             HhhhhcchhHHHHhHHHHH-HhcCCCCC-c---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308          298 ALQQLSGINAVFYFSSTVF-KNAGVPSD-S---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA  372 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      .+..    .....+++.++ ...+.+.. .   .....+++.+++.++.+++.||+++++.+..+.++.+++.+++.+..
T Consensus       245 ~~~~----~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~  320 (1146)
T PRK08633        245 WFIS----QLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP  320 (1146)
T ss_pred             HHHH----HHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh
Confidence            4322    22223333333 33565555 3   55556678889999999999999988887777776666655554432


Q ss_pred             hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchh
Q 011308          373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LGPLIL  451 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~  451 (489)
                              +.+..++..++++++.+... +...+++.+..|++.||+++|+.+++.+++..+++.+.+.+... .++...
T Consensus       321 --------~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~  391 (1146)
T PRK08633        321 --------SLASVLVLFFLFGFSAGLFI-VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGL  391 (1146)
T ss_pred             --------hHHHHHHHHHHHHHHHHHhh-HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence                    12233344444444444333 34456788999999999999999999999998887776655431 233334


Q ss_pred             hHHHHHHHHHH
Q 011308          452 YTIFGSFCFLA  462 (489)
Q Consensus       452 ~~~~~~~~~~~  462 (489)
                      +.+.+.++++.
T Consensus       392 ~~~~~~~~~~~  402 (1146)
T PRK08633        392 FYLIALVTLIG  402 (1146)
T ss_pred             HHHHHHHHHHH
Confidence            54444444433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.96  E-value=3.6e-27  Score=226.62  Aligned_cols=371  Identities=19%  Similarity=0.178  Sum_probs=267.0

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      +..++.+.+++.++..+....++.+..+..  .+....+++..+..+...+.++++|.++||++|||+++.+.++.++..
T Consensus        12 Fr~lw~a~~iS~lG~~~~~va~~wlv~~lt--~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~   89 (524)
T PF05977_consen   12 FRRLWIAQLISNLGDWMQTVALAWLVTQLT--GSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVA   89 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence            334556667777777777777887776654  445555999999999999999999999999999999999988877665


Q ss_pred             HHHhhh-----hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchH
Q 011308          133 SMSAIT-----KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWW  207 (489)
Q Consensus       133 ~~~~~~-----~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~W  207 (489)
                      +..++.     .+.+.+++.-++.|++.+...|+..+++.|..|+++...+.++.+...++..++||.++|.+....| -
T Consensus        90 ~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G-~  168 (524)
T PF05977_consen   90 LLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFG-A  168 (524)
T ss_pred             HHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHH-H
Confidence            554432     3788899999999999999999999999999999999999999999999999999999999998888 6


Q ss_pred             HHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccc
Q 011308          208 RICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNF  287 (489)
Q Consensus       208 r~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (489)
                      .+.|++.++..++..+....++++++   +++.++                         ++-.+.-...++.+.+++..
T Consensus       169 ~~~f~inalsfl~~i~~l~~~~~~~~---~~~~~~-------------------------e~~~~~l~~G~ryv~~~~~l  220 (524)
T PF05977_consen  169 AAAFLINALSFLISILALLRWKPPPP---PSSLPR-------------------------ERFFSALREGLRYVRSSPPL  220 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcccccc---ccccch-------------------------hhhhhhHHHHHHHHhcchHH
Confidence            88998887766665444444433211   000000                         00011122344555556665


Q ss_pred             cchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308          288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAI  363 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (489)
                      +..+...+++.+...    .+...+|.+.++ .+.++..   .....+++.++|.++.+++.+|+++++.+..+.+..++
T Consensus       221 ~~~l~~~~~~~l~~~----a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~  296 (524)
T PF05977_consen  221 RSVLLRSFLFNLFAS----AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFAL  296 (524)
T ss_pred             HHHHHHHHHHHHhhh----HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHH
Confidence            555444444433222    222234444432 4444444   56677889999999999999999988888888877777


Q ss_pred             HHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          364 AMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      +.+.+.+....        +.....+++.+.+..... ....+..++..|++.+|++++++++....+..+|..+.|.+.
T Consensus       297 ~~~~lal~~~~--------~~~~~~l~l~G~~~~~~~-~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la  367 (524)
T PF05977_consen  297 ALLLLALSPSF--------WLALIALFLAGAAWIIAN-SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLA  367 (524)
T ss_pred             HHHHHhcchHH--------HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76666654332        334444444454444332 344557889999999999999999999999999999999999


Q ss_pred             HHhccchhhHHHHHHHHHHHHHhh
Q 011308          444 EQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       444 ~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      +..|....+.+.++..+++.++..
T Consensus       368 ~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  368 DHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHH
Confidence            999988888777666555555444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=2.4e-27  Score=255.04  Aligned_cols=341  Identities=11%  Similarity=-0.025  Sum_probs=230.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh---hhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHH
Q 011308           90 EGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL---CALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYV  166 (489)
Q Consensus        90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i  166 (489)
                      .++..+++.+.+.++++++|+++||+|||+++..   +.++..+..+.....+|++.++++|+++|++.+...|+..+++
T Consensus        54 ~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l  133 (1140)
T PRK06814         54 VTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSIL  133 (1140)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhh
Confidence            4888999999999999999999999999997633   2233333333334458999999999999999999999999999


Q ss_pred             HhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHH
Q 011308          167 SEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEA  246 (489)
Q Consensus       167 ~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~  246 (489)
                      .+++++++|++++++.+++.++|.++||++++++.+..+ |++.|+..++..++..+..+++|+++..  .++...+.  
T Consensus       134 ~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--  208 (1140)
T PRK06814        134 PDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGN-FVILVALLMGIAVLGWLASLFIPKTGNA--APDLKIDR--  208 (1140)
T ss_pred             HhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeecc--
Confidence            999999999999999999999999999999999999888 9999955555555555555566665420  00000000  


Q ss_pred             HHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc
Q 011308          247 ELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS  325 (489)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  325 (489)
                                            ...++....++.+.+++.++...+..++..+...    .+..++|.++.+ .+.+...
T Consensus       209 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~g~~~~~  262 (1140)
T PRK06814        209 ----------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGA----VVLSQLPLLAKETLGGDENV  262 (1140)
T ss_pred             ----------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHcCCchHH
Confidence                                  0000112346677788887776666555544322    233344444443 4555443


Q ss_pred             ---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcc------------cCCCcchhHHHHHHH
Q 011308          326 ---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSF------------VSSSGALSLSLGGML  390 (489)
Q Consensus       326 ---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  390 (489)
                         .....+++.+++.++.+++.|+..+++.+..+.++..++.+.+.+.....            .....+.+...+..+
T Consensus       263 ~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  342 (1140)
T PRK06814        263 ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLF  342 (1140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHH
Confidence               55667788899999999999887766655555554444443333210000            000122233344444


Q ss_pred             HHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHH
Q 011308          391 LFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LGPLILYTIFGSFCFLA  462 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~  462 (489)
                      +++.+.+.... ...+++++..|++.+|+++|+.+++.+++..+++.+.+.+.+. .++...+.+.++++++.
T Consensus       343 ~~g~~~~~~~~-~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~  414 (1140)
T PRK06814        343 GLAAAGGLYIV-PLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLIV  414 (1140)
T ss_pred             HHHHHHHHhHH-HHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            45554443333 3566888999999999999999999999999999999998753 34555555444443333

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.96  E-value=1.2e-26  Score=224.22  Aligned_cols=410  Identities=13%  Similarity=0.075  Sum_probs=256.2

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhh-c--ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISL-D--LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPM  128 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~  128 (489)
                      +..+++..+...+......+.+|.+.+ +  +|++..+.  |++.+.+.+++.++++++|+++|| +|||+++..+.++.
T Consensus        12 ~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~a--g~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~   89 (475)
T TIGR00924        12 LFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQA--FIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVL   89 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH--HHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHH
Confidence            344455666666776667777776654 4  78877776  999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccc---hhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV---RGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~---r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      +++.++.+++++++.++++|++.|+|.|...+...++++|++|+++   |+.++++++.+.++|.++||.+++++.+..+
T Consensus        90 ~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g  169 (475)
T TIGR00924        90 MLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYG  169 (475)
T ss_pred             HHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999998754   8889999999999999999999999998888


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhccc----CChhHHHhcC-ChHH--HHHHHHH------------HhCCCCchHHH-----
Q 011308          206 WWRICFWVATIPAAFLALFMEFCA----ESPHWLFKRG-RGAE--AEAELER------------LFGGLHVKYSM-----  261 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~~~----e~~~~~~~~~-~~~~--~~~~~~~------------~~~~~~~~~~~-----  261 (489)
                       ||+.|++.++..++..+...+.+    +.|+.  +++ +.++  ..+....            ...........     
T Consensus       170 -~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (475)
T TIGR00924       170 -YHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSV--PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTV  246 (475)
T ss_pred             -hHHHHHHHHHHHHHHHHHHHHcccccccCCCC--CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence             99999997765554433333322    22110  000 0010  0000000            00000000000     


Q ss_pred             -----HHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc--C--CCCCchhHHHHH
Q 011308          262 -----AELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--G--VPSDSGNICVGI  332 (489)
Q Consensus       262 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~  332 (489)
                           ........++.   ....+-.|...+..+++...+++..+....+.++.+.....+..  +  .+.+....+.++
T Consensus       247 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~  323 (475)
T TIGR00924       247 TLAVIIFFFRLAFKPR---LDAVARNKMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPF  323 (475)
T ss_pred             HHHHHHHHHHHHHhcc---CCHHHHhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHH
Confidence                 00000000000   00000001111112222222222222222222222222221111  1  112235555556


Q ss_pred             HHHHHHHHHHHHHhhhCC-----chhH--HHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcch
Q 011308          333 ANLSGSIIAMILMDKLGR-----RVLL--LGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVP  404 (489)
Q Consensus       333 ~~~~~~~~~g~l~d~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (489)
                      ..++..++..++..|.+|     +...  ..+.++.++++..+.+....... ...+.++.+....+.+.+-. ...|..
T Consensus       324 ~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~-~~~p~~  402 (475)
T TIGR00924       324 WVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGEL-MISPLG  402 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHH-HHhHHH
Confidence            666666554443334333     2333  56777777776666543211111 12345555555555555544 445677


Q ss_pred             hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhccc
Q 011308          405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      ..+..+..|++.||+.+|+......+|..+++.+.....+..++...|...++++++..++.++..|
T Consensus       403 ~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  469 (475)
T TIGR00924       403 LSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMALMVP  469 (475)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999999999887777767777888888777777666655443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.7e-27  Score=207.71  Aligned_cols=366  Identities=14%  Similarity=0.151  Sum_probs=276.3

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (489)
                      .+..+....++.++......+.+|.+++.|+++..+.  +++...++.+|.+.+++.|++.+|+|+|+.++.|+.+++++
T Consensus        14 ~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a--~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg   91 (422)
T COG0738          14 AFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEA--SLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVG   91 (422)
T ss_pred             HHHHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHHH--HHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3445555667778888889999999999999998888  99999999999999999999999999999999999999999


Q ss_pred             HHHHh---hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-----
Q 011308          132 ASMSA---ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-----  203 (489)
Q Consensus       132 ~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-----  203 (489)
                      +.+..   ...+|..++++-++.|.|.+...++.+.+++...++++....+++.+..+++|.+++|++++.+...     
T Consensus        92 ~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~  171 (422)
T COG0738          92 AALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALT  171 (422)
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhc
Confidence            99984   5678999999999999999999999999999999998889999999999999999999999988762     


Q ss_pred             -------------cchHHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhh
Q 011308          204 -------------LGWWRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSE  268 (489)
Q Consensus       204 -------------~~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (489)
                                   ...||++|...+...+++.+....  .|+.+.                                ..+
T Consensus       172 ~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~--------------------------------~~~  219 (422)
T COG0738         172 MSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV--------------------------------AAP  219 (422)
T ss_pred             cCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc--------------------------------ccc
Confidence                         112788888877776666665444  333221                                000


Q ss_pred             hccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHH
Q 011308          269 RGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMIL  344 (489)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l  344 (489)
                      +..+.+.....+++++|.++...+..+++.....    ....+++.++.+ .|.+...   .......+.++|++++.++
T Consensus       220 ~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Ev----a~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~l  295 (422)
T COG0738         220 SLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEV----AIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSAL  295 (422)
T ss_pred             cccccccchHHHHHhChHHHHHHHHHHHHHhHHH----HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111156788889988877777777766444    444455555555 4444433   6667778889999999999


Q ss_pred             HhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHH
Q 011308          345 MDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC  424 (489)
Q Consensus       345 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~  424 (489)
                      .+|+...+.+....+...+.++...+...         .+.+.+..+.+.+.+ ...|...+...+..| + .....|..
T Consensus       296 m~~~~~~k~Laf~a~~~ill~~~~~l~~g---------~v~~~~l~~ig~F~s-imfPTIfslal~~l~-~-~ts~~s~~  363 (422)
T COG0738         296 MSRIKPEKYLAFYALIAILLLLAVALIGG---------VVALYALFLIGLFNS-IMFPTIFSLALKNLG-E-HTSVGSGL  363 (422)
T ss_pred             HHHhCHHHHHHHHHHHHHHHHHHHHHhcC---------hHHHHHHHHHHHHhH-HHHHHHHHHHHhccC-c-ccccccee
Confidence            99999888887777666555555555433         123344444444444 445677777778878 3 44555556


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308          425 MAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       425 ~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      -.+.-+|+++.|++.|++.|+.|....+.....+|.+..+...
T Consensus       364 l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV~~~~  406 (422)
T COG0738         364 LVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYVLFFA  406 (422)
T ss_pred             eeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            6677889999999999999999987777766666666654443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=7.4e-26  Score=196.99  Aligned_cols=366  Identities=17%  Similarity=0.146  Sum_probs=276.3

Q ss_pred             hhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      +..+..+.+..+--.-..+.++|.++++++|+|+|.+..  |++.+...+...+.+++..+++.|+|.++.+..++++.+
T Consensus        11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~gls~s~a--GlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~   88 (395)
T COG2807          11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDLGLSFSVA--GLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIA   88 (395)
T ss_pred             hHHHHHHHHHHhccchhhhhhhhhHHHHHHHhcccHHHH--HHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHH
Confidence            444444444445555566788999999999999999888  999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                      ++.++-... +.+.++.+-.+.|.|.+...+..+.++.+.||+ +-+..+++|....++|..+++.+...+.++.++||.
T Consensus        89 ~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk-~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~  166 (395)
T COG2807          89 AGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKRDFPK-RVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRG  166 (395)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHhhccc-chhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHH
Confidence            999999887 788889999999999999999999999999965 579999999999999999999999999988844999


Q ss_pred             HHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccc
Q 011308          210 CFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGV  289 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (489)
                      .....+.++++.++.++.  ...|    ++                            ....+.+..+-..++|++.-|.
T Consensus       167 aL~~WAl~allAl~~WlP--q~~r----~~----------------------------~~~~~~~~~~~~~vw~~~~aW~  212 (395)
T COG2807         167 ALGFWALLALLALLIWLP--QALR----EQ----------------------------AASIATKLVSVRKVWRSPLAWQ  212 (395)
T ss_pred             HHHHHHHHHHHHHHHHhh--hccc----cc----------------------------ccccccccccccccccCchhHH
Confidence            999999999888776543  2111    00                            0001111222345788887776


Q ss_pred             hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhC-CchhHHHHHHHHHHHH
Q 011308          290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLG-RRVLLLGSFLGMAIAM  365 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~-~~~~~~~~~~~~~~~~  365 (489)
                      +.+.+.+..+    .++....++|.++.+.|.++..   ...+..+..++.++....+.+|.+ +|+.......++.++.
T Consensus       213 vtLfmGlqS~----~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~  288 (395)
T COG2807         213 VTLFMGLQSL----LYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGL  288 (395)
T ss_pred             HHHHHHhhHH----HHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            6655555444    4666777889999999998877   445566788889999999999865 6666677777777777


Q ss_pred             HHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc-ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS-EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      +.+.+.+...      .   +....+++.+.+.. .|+....+. +...++..+.-.|+.+.++++-..+||.++|.+.|
T Consensus       289 ~G~~~~P~~~------~---~lw~~llG~G~G~~-F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhD  358 (395)
T COG2807         289 VGLLLAPGQL------P---ILWALLLGLGQGGA-FPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHD  358 (395)
T ss_pred             HHHHHhhhhH------H---HHHHHHHhCccchH-HHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHH
Confidence            7766554321      1   11134444443332 233333333 44456778999999999999999999999999999


Q ss_pred             Hhc-cchhhHHHHHHHHHHHHHhh
Q 011308          445 QLG-PLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       445 ~~g-~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ..| |...+..++.+.++..+.-+
T Consensus       359 a~gsw~~~~~~l~~~~i~m~i~Gl  382 (395)
T COG2807         359 ATGSWSAPLVLLALATLLMLIFGL  382 (395)
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHh
Confidence            987 66666666666555555444

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.95  E-value=5.1e-26  Score=217.40  Aligned_cols=376  Identities=18%  Similarity=0.184  Sum_probs=236.4

Q ss_pred             HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308           56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS  135 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (489)
                      .++.....++.....+..++.+..|+|-++..   +|+.+.+.++.+++.++.|+++|.||||.+++.+.++..+|++.+
T Consensus        49 ~~~~~~~~~~~~~~~a~~l~~I~~diG~~~~~---~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~  125 (599)
T PF06609_consen   49 FSLAVIAAYFVLVLPASILPYINADIGGSDNW---SWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVC  125 (599)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHhcCCCccc---hHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHh
Confidence            34444444455555677789999999865443   699999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308          136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT  215 (489)
Q Consensus       136 ~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~  215 (489)
                      +.++|...++.+..+.|+|.|... .....++|..|.|.|....++..........+++.++..+....+ |||.|++..
T Consensus       126 atA~~~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~-WRw~~~~~~  203 (599)
T PF06609_consen  126 ATAQNMNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSG-WRWIFYIFI  203 (599)
T ss_pred             hcCCcHHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCC-cchHHHHHH
Confidence            999999999999999999977665 456668999999999888877776665555677777776666666 999999998


Q ss_pred             HHHHHHHHHhhcccCChhHHHhcCC---hHHHHHHHHHH-----------------hCCCC-----chHHHH--------
Q 011308          216 IPAAFLALFMEFCAESPHWLFKRGR---GAEAEAELERL-----------------FGGLH-----VKYSMA--------  262 (489)
Q Consensus       216 ~~~~~~~~~~~~~~e~~~~~~~~~~---~~~~~~~~~~~-----------------~~~~~-----~~~~~~--------  262 (489)
                      +...+.++..+++..+|++...+++   +.+.-+.++.+                 .+...     ......        
T Consensus       204 i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~  283 (599)
T PF06609_consen  204 IWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVL  283 (599)
T ss_pred             HHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHH
Confidence            8776665543332222322222221   11222221111                 01110     000000        


Q ss_pred             --HHhhhhhc-cchhhhhHHhhhccc-cccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCC---CCCchhHHHHHHHH
Q 011308          263 --ELSKSERG-DEADAVKFSELISPR-NFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGV---PSDSGNICVGIANL  335 (489)
Q Consensus       263 --~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  335 (489)
                        ..--.|.. ..+++.-..+++|++ .+...++..++....++......+.....++.....   ..+......+++..
T Consensus       284 Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~  363 (599)
T PF06609_consen  284 LVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSC  363 (599)
T ss_pred             HHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHH
Confidence              00011211 123344455677763 343333444444433322222223322223332222   12235566778888


Q ss_pred             HHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh
Q 011308          336 SGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN  414 (489)
Q Consensus       336 ~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  414 (489)
                      .+.++.|.+..+++| |..++.+..++.+++.++.....    ++.+.  .+...++.+.+.+.... .....++-..|+
T Consensus       364 ~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~----~n~~~--~i~~~~l~g~giG~~~~-~~~~~~ql~~p~  436 (599)
T PF06609_consen  364 AGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRP----DNKNA--AIAFLVLAGFGIGGILV-PAIVIAQLIVPD  436 (599)
T ss_pred             HHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccC----CCcch--HHHHHHHHHHhHHHHHH-HHHHeeEeeeCc
Confidence            888999999998886 44555666666655555443321    11222  22333333444333322 223345566799


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          415 RIRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       415 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      +..|++.|+..+++.+|+.++..+...+.
T Consensus       437 ~~ig~a~gL~~s~R~~GGsIg~aIy~~I~  465 (599)
T PF06609_consen  437 EDIGTATGLTGSIRSIGGSIGYAIYNAIF  465 (599)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999999999886655

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.95  E-value=1e-26  Score=213.13  Aligned_cols=397  Identities=13%  Similarity=0.070  Sum_probs=251.8

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccc-hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGST-MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMII  130 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i  130 (489)
                      ....+|+..|+.. .+...+.+.|.+.+|+|++.++ .  |.+.++++.+|++++++.|+++||+|.|+++..+++.+++
T Consensus        28 ~~~~lC~fGF~~e-~R~n~s~a~p~L~~elglT~~qv~--G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl  104 (511)
T TIGR00806        28 LVLYLCFYGFMAQ-FRPGESFITPYLLTVLNFTEETVT--NEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVC  104 (511)
T ss_pred             HHHHHHHHHHHHH-hhchHHHHHHHHHHHcCCCHHHhc--chHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3344555545543 3566788899999999999988 5  9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHH
Q 011308          131 GASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRIC  210 (489)
Q Consensus       131 ~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~  210 (489)
                      .+++.++++++..+.+.|++.|++.|... +...++..|+|+++|+++.++..++..+|.+++++++++ ....+ ||+.
T Consensus       105 ~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g-Wr~y  181 (511)
T TIGR00806       105 VWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG-WISY  181 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC-chhH
Confidence            99999999999999999999999999999 999999999999999999999999999999999999999 44567 8876


Q ss_pred             HHHh---HHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhh---ccchhhhhHHhhhcc
Q 011308          211 FWVA---TIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSER---GDEADAVKFSELISP  284 (489)
Q Consensus       211 f~~~---~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  284 (489)
                      +.+.   .....+.++..+++|..++-+.-+++.+.......+.....+.+........+..   .-..-...+++..++
T Consensus       182 ~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n  261 (511)
T TIGR00806       182 STLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRN  261 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcC
Confidence            6543   2233334445567786555333332211000000000000000000000000000   001112334444555


Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCC-CCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVP-SDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG  360 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (489)
                      +...    ...+++....+++..+..|.+.+.+...-+ ...   +-.+..+.+.+..+..|++-.+..+...+..+...
T Consensus       262 ~~vl----~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s  337 (511)
T TIGR00806       262 PQLL----LWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVS  337 (511)
T ss_pred             cchh----hhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHH
Confidence            5443    233344444456777777888777664221 112   44455566667777888874444332223333222


Q ss_pred             HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH-
Q 011308          361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF-  439 (489)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~-  439 (489)
                      ..-+.+++..      ....++|+..++.+++...+.+... +...-+++....+..|..+|+.+++..+-..+...+. 
T Consensus       338 ~~~~gll~~m------~~t~~Iw~~Y~~yvlf~~~y~flit-ia~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~iVv  410 (511)
T TIGR00806       338 AIQAGLVFWM------SQSHDIWVLYVTYVLFRGIYQFLVP-IATFQIASSLSKELCALVFGINTFVATALKTIITAVVS  410 (511)
T ss_pred             HHHHHHhhhh------hcccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccceEEEEecHHHHHHHHHHheEEEEE
Confidence            2222221111      1245678888888888888876544 3333455555667779999999998877776666554 


Q ss_pred             ---HHHHH---Hh-ccchhhHHHHHHHHHHHHH
Q 011308          440 ---LRLLE---QL-GPLILYTIFGSFCFLAVIY  465 (489)
Q Consensus       440 ---g~l~~---~~-g~~~~~~~~~~~~~~~~~~  465 (489)
                         |.-.+   ++ -|...|.+++++.++..++
T Consensus       411 d~~gl~l~i~~Qf~vY~~yf~~~~~i~~~~~~~  443 (511)
T TIGR00806       411 DKRGLGLQVRKQFRIYSVYFLVLSIICFFGAGL  443 (511)
T ss_pred             cccccCCCceeEEEehhhHHHHHHHHHHHHHHH
Confidence               11111   11 1344566666666655443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.95  E-value=4.5e-27  Score=233.10  Aligned_cols=301  Identities=17%  Similarity=0.176  Sum_probs=213.1

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      +..++..+...+..+..++.++.+.++|+++.++.  |++.+.+.++++++.++.|+++||+|||+++.+++++++++++
T Consensus        36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~--G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l  113 (633)
T TIGR00805        36 LLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSS--GLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF  113 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcc--eeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence            44445666667777888999999999999999888  9999999999999999999999999999999999999999999


Q ss_pred             HHhhhh---------------------------------------------------hHHHHHHHHHHHhhcccchhhhH
Q 011308          134 MSAITK---------------------------------------------------NLWGMLLGRLFVGTGMGIGPAVA  162 (489)
Q Consensus       134 ~~~~~~---------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~  162 (489)
                      ++++.+                                                   .+..++++|+++|+|.+...+..
T Consensus       114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~  193 (633)
T TIGR00805       114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLG  193 (633)
T ss_pred             HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcC
Confidence            988753                                                   25567789999999999999999


Q ss_pred             HHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc---------------------chHHHHHHHhHHHHHHH
Q 011308          163 ALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL---------------------GWWRICFWVATIPAAFL  221 (489)
Q Consensus       163 ~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~---------------------~~Wr~~f~~~~~~~~~~  221 (489)
                      .+++.|++|+++|+++++++..+..+|.++|+++++++.+.+                     |.||..|++.+++.++.
T Consensus       194 ~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~  273 (633)
T TIGR00805       194 ISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLT  273 (633)
T ss_pred             chhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999887542                     12788898888887777


Q ss_pred             HHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhh
Q 011308          222 ALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQ  301 (489)
Q Consensus       222 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (489)
                      .+.++++|++.+....+.+.+..++.  ....... .    ...+.....++....++++++++.++...+..++.... 
T Consensus       274 ~v~l~~~p~~lp~~~~~~~~~~~~~~--~~~~~~~-~----~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~-  345 (633)
T TIGR00805       274 SIPFFFFPKALPKEGKRVNVDVHETE--KLEKSED-K----SRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLA-  345 (633)
T ss_pred             HHHHHhCccccCCcccccchhhhhhh--ccccccc-c----cchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-
Confidence            66666666543210000000000000  0000000 0    00000001112234577889999887766666555543 


Q ss_pred             hcchhHHHHhHHHHHHh-cCCCCCchhHHH---HH-HHHHHHHHHHHHHhhhCC--chhHHHHHHHHHHHHHH
Q 011308          302 LSGINAVFYFSSTVFKN-AGVPSDSGNICV---GI-ANLSGSIIAMILMDKLGR--RVLLLGSFLGMAIAMGV  367 (489)
Q Consensus       302 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~-~~~~~~~~~g~l~d~~~~--~~~~~~~~~~~~~~~~~  367 (489)
                         ...+..++|.+++. .+.+......+.   .+ +.+++.+++|+++||++.  |+.+..+.+...++.++
T Consensus       346 ---~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~  415 (633)
T TIGR00805       346 ---FNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL  415 (633)
T ss_pred             ---HHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence               44455566666654 566655543333   33 457899999999999984  45666666555555433

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.95  E-value=2e-26  Score=223.04  Aligned_cols=336  Identities=17%  Similarity=0.131  Sum_probs=225.9

Q ss_pred             hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchh-HhhhhhHHHHHHHHHHhhhhh------H
Q 011308           73 TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRRR-AFQLCALPMIIGASMSAITKN------L  141 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~~~------~  141 (489)
                      ..+.+.+++|+++.+.  |++.++..+..++..++.|+++||    +|||| .++.+....+++.+++.+.++      .
T Consensus        22 l~~~~~~~~g~s~~~~--g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~   99 (437)
T TIGR00792        22 LLFFYTDVLGLSAAFV--GTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL   99 (437)
T ss_pred             HHHHHHHccCCCHHHH--HHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence            4556777899988887  999999999999999999999997    68744 677788888888887776553      4


Q ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhcccc-------cccchHHHHHHH
Q 011308          142 WGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAK-------EILGWWRICFWV  213 (489)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-------~~~~~Wr~~f~~  213 (489)
                      ..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+.       +..+ ||+.+++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g-~~~~~~i  178 (437)
T TIGR00792       100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFG-WFMFALV  178 (437)
T ss_pred             HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccc-HHHHHHH
Confidence            56677788889888887777788888887 4688999999998888888777666544443       2345 9999999


Q ss_pred             hHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          214 ATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .+++.++..+.. ++.+|+++.    .+                         ++++++.+....+++++++|.++....
T Consensus       179 ~~~l~~~~~~~~~~~~~e~~~~----~~-------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~  229 (437)
T TIGR00792       179 LALIGVVSLIICFFGTKERYSE----IP-------------------------KNIEKKLSLKQIFKALFKNDQLLILCL  229 (437)
T ss_pred             HHHHHHHHHHHHHcCCEecCCC----CC-------------------------cccccCCCHHHHHHHHhCCHHHHHHHH
Confidence            888877765554 446665310    00                         000011112334667788887776655


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA  372 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      ..++............++|.....+ .....+.......++.+++.++.+++.||+++|+.+..+..+.+++.+.+.+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~  308 (437)
T TIGR00792       230 AYLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG  308 (437)
T ss_pred             HHHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc
Confidence            5554444322222222222222111 000011134455678889999999999999999998888877777665554321


Q ss_pred             hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  445 (489)
                             .+.+.......+.+.+.+.. .+...++..|..+       ++.+|.+.|+.++...+|..+++.+.|.+.+.
T Consensus       309 -------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       309 -------SNLPLILVLIILAGFGQNFV-TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             -------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   11222333333334443322 3445556666644       55689999999999999999999999999998


Q ss_pred             hccc
Q 011308          446 LGPL  449 (489)
Q Consensus       446 ~g~~  449 (489)
                      .|+.
T Consensus       381 ~G~~  384 (437)
T TIGR00792       381 IGYV  384 (437)
T ss_pred             cCCC
Confidence            7763

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.95  E-value=2.7e-26  Score=200.02  Aligned_cols=344  Identities=17%  Similarity=0.151  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308           90 EGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV  169 (489)
Q Consensus        90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (489)
                      .|.+.++|.+...+.++.+|.++||||||+++++|++..++..++.+.++|+..++++|++.|+..|- .....++++|.
T Consensus        70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgn-l~v~rAiisdV  148 (451)
T KOG2615|consen   70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGN-LSVIRAIISDV  148 (451)
T ss_pred             hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc-hHHHHHHHHhh
Confidence            59999999999999999999999999999999999999999999999999997777779999998664 57889999999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHhhccccc---ccchHHHHHHHhHHHHHH-----HHHHhhcccCChhHHHhcCCh
Q 011308          170 SPAYVRGAYGSSTQIAACLGILVALFVGLPAKE---ILGWWRICFWVATIPAAF-----LALFMEFCAESPHWLFKRGRG  241 (489)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---~~~~Wr~~f~~~~~~~~~-----~~~~~~~~~e~~~~~~~~~~~  241 (489)
                      +++|+|+++++..+..+++|.++||.+|+++.+   ..+  +.+|........+     .....+++||+-+   .|++.
T Consensus       149 ~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g--~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~rk~~  223 (451)
T KOG2615|consen  149 VSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISG--SYPFALPCLLVFILAAGDVTFFPWFLPETLP---LRKRN  223 (451)
T ss_pred             cChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhc--cCchHHHHHHHHHHHHHHHHHHHHhCCcccc---chhhc
Confidence            999999999999999999999999999999998   334  3444443322222     2234566888843   22222


Q ss_pred             HHHHHHHHHHhCCCCchHHHHHHhhhh-hccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHH--HH--
Q 011308          242 AEAEAELERLFGGLHVKYSMAELSKSE-RGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSST--VF--  316 (489)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--  316 (489)
                      ++... .             .+..+.+ +..+.....--...+++.....+.....+....+.....++.+..+  .+  
T Consensus       224 ~~~~~-~-------------~~~~~~~~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~  289 (451)
T KOG2615|consen  224 DEHST-L-------------QEAADDRLALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTH  289 (451)
T ss_pred             ccccc-h-------------hhhhhhhhhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhc
Confidence            11100 0             0000000 0000001111122334433332222222222222222222222221  12  


Q ss_pred             HhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc-----hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Q 011308          317 KNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR-----VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLL  391 (489)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (489)
                      +..|+++....-.....++.+.++.+.+..+..|.     ..+.....++.-.++++....        ....+.....+
T Consensus       290 ~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~~--------~~~~l~~~s~l  361 (451)
T KOG2615|consen  290 GRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLAR--------TPVVLYLGSTL  361 (451)
T ss_pred             CccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhccc--------cchhhhHHHHH
Confidence            33556555543344444444444444544444332     233333333322222222221        11223334444


Q ss_pred             HHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHH
Q 011308          392 FVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL-GPLILYTIFGSFCFLA  462 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~  462 (489)
                      ..+..... .+....++....|.++||+++|+..+.+.++.++||.+.|.+.... +-+..+..-+.+.+..
T Consensus       362 ~sf~~A~~-vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~  432 (451)
T KOG2615|consen  362 KSFSTASV-VTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP  432 (451)
T ss_pred             HHHHHHHh-hHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence            44433333 3455568888999999999999999999999999999998876532 3334444444444444

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.95  E-value=5.9e-25  Score=208.98  Aligned_cols=371  Identities=10%  Similarity=-0.028  Sum_probs=244.3

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHH--HHHHHHHHHHHHHHHHH-hhcccCchhHhhhhhHHH-
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLV--VSTCLGGAFVGSMFSGW-IADGIGRRRAFQLCALPM-  128 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~--~s~~~~~~~~~~~~~g~-l~dr~Grr~~l~~~~~~~-  128 (489)
                      ...++..++..+...+...+.+|.+.+|.|.+.++.  |++  .+...+...+.+++++. ..||+||||..++.+.+. 
T Consensus         3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~g~~~~~i--Gl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~   80 (390)
T TIGR02718         3 VITLGLLYLSQGIPIGLAMDALPTLLREDGAPLTAL--AFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLV   80 (390)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHH
Confidence            455666778888888899999999999999988888  886  35667777778888844 799999999976655332 


Q ss_pred             HHHHHHHh---hhhh-HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          129 IIGASMSA---ITKN-LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       129 ~i~~~~~~---~~~~-~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      ++.....+   ...+ ...++..-++.++..+...+....+..|..++++++...+....+..+|.++|+.+.+++.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~  160 (390)
T TIGR02718        81 SACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF  160 (390)
T ss_pred             HHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            21122222   2222 3334445555666777777888888899998888899999999999999999999998999888


Q ss_pred             chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308          205 GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP  284 (489)
Q Consensus       205 ~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                      + ||..|++.++..++..+..++++|+++   ++++                             .+++...++++.+|+
T Consensus       161 g-w~~~f~~~a~l~~~~~~~~~~~~~~~~---~~~~-----------------------------~~~~~~~~~~~~l~~  207 (390)
T TIGR02718       161 G-QRPAFLLVACVPLASLVCVLWLKDRAV---ASPE-----------------------------APLARRASLFRFFRR  207 (390)
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHcCCCCc---Cccc-----------------------------cchhhHHHHHHHHcC
Confidence            8 999999999887766655555444321   0000                             000112245677888


Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHH----HHHHHHHHHHHHHHhhhCCchhHHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVG----IANLSGSIIAMILMDKLGRRVLLLGSFLG  360 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~d~~~~~~~~~~~~~~  360 (489)
                      |..+......++.....    .....+.+.++.+.|.+.........    ...+++.++.|++.||+++|+.+..+..+
T Consensus       208 ~~~~~~~~~~~l~~~~~----~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~  283 (390)
T TIGR02718       208 PLAWSLLALALLSAMTA----VSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGL  283 (390)
T ss_pred             cCHHHHHHHHHHHHHHH----HHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            87666555544444322    22333455566667887776444433    34557788999999999999988776665


Q ss_pred             HHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh-hhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          361 MAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN-RIRAKAMAVCMAVHWVINFFVGLLF  439 (489)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~~~~~~~  439 (489)
                      ..+..+..........  ............+.....+... +.......+..++ +.+++.+++.+...++|..++|.+.
T Consensus       284 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~  360 (390)
T TIGR02718       284 AGSLALLWFAQAAFWL--APGIAVAWSCSAFGSLITGITS-VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIA  360 (390)
T ss_pred             HHHHHHHHHHHHHccc--CCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            5333222222111110  1111111222222222222222 2223343444454 7899999999999999999999999


Q ss_pred             HHHHHHhccchhhHHHHHHHHHHHHH
Q 011308          440 LRLLEQLGPLILYTIFGSFCFLAVIY  465 (489)
Q Consensus       440 g~l~~~~g~~~~~~~~~~~~~~~~~~  465 (489)
                      |.+.|..|+...|...+++.+++.++
T Consensus       361 G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       361 GYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            99999999988888887777666544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00901 2A0125 AmpG-related permease

Probab=99.95  E-value=5.6e-26  Score=213.51  Aligned_cols=325  Identities=16%  Similarity=0.083  Sum_probs=219.8

Q ss_pred             cccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchhH-hhhhhHHHHHHHHHHhhh--
Q 011308           67 LGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRRA-FQLCALPMIIGASMSAIT--  138 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~-l~~~~~~~~i~~~~~~~~--  138 (489)
                      ....++.+|.+.+|+|+|.++.  |+..+. .+...+ .+++|+++||+     ||||. ++.+.++.++...+.++.  
T Consensus         4 ~~~~~~~~~~~~~~~g~s~~~~--g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~   79 (356)
T TIGR00901         4 LGLVGNTLPYWLRSKNVSLKTI--GFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP   79 (356)
T ss_pred             chhHHhHHHHHHHHcCCCHHHH--HHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc
Confidence            3456778999999999999887  888655 455554 89999999998     89987 467777787777777776  


Q ss_pred             -hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-------HHHH
Q 011308          139 -KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-------WRIC  210 (489)
Q Consensus       139 -~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-------Wr~~  210 (489)
                       .+.+.+.+..++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.+++.+.+..+.       ||..
T Consensus        80 ~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~  159 (356)
T TIGR00901        80 STDLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYI  159 (356)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHH
Confidence             46667777888888888888899999999999999999999999999999999999999888776552       9999


Q ss_pred             HHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc---
Q 011308          211 FWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN---  286 (489)
Q Consensus       211 f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  286 (489)
                      |++.++..++..+..++ .||+++.   +++.++                          ++++....++++++++.   
T Consensus       160 f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~  210 (356)
T TIGR00901       160 FFWTALLILPGLLVTLFLAKEPQED---ASVPKP--------------------------LTQAVLKPIREFFQRKNMIQ  210 (356)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCcc---cccchh--------------------------HHHHHHHHHHHHHHhcCchH
Confidence            99988877776555444 4554220   000000                          00011224556666665   


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHH---H-HHHHHHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICV---G-IANLSGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      .+...+..++...    .......+.+.++.+.|.+........   + +..+++.++++++.||+++|+.+..+.++.+
T Consensus       211 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~  286 (356)
T TIGR00901       211 ALLLLLLIVLYKL----GDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQA  286 (356)
T ss_pred             HHHHHHHHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            2322222222222    233344455555566677766643332   3 4567899999999999999988887777776


Q ss_pred             HHHHHHHHHhhcccC---CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVS---SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHW  429 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~  429 (489)
                      +...++.+.......   .....+.......+.+++.+. ..+...++..|.+|+++||+.+|+.++..+
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       287 LTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGL-GTVAFVAFLSKLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence            665554443211100   001222233333333443333 234566789999999999999999988764

>PTZ00207 hypothetical protein; Provisional

Probab=99.94  E-value=3.1e-24  Score=206.82  Aligned_cols=406  Identities=13%  Similarity=0.051  Sum_probs=258.9

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhh
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCA  125 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~  125 (489)
                      ..++|..+..........+.. ..++...|.+++++|++.++.  +++.++. ..+..++++.|+++||+|||+++.++.
T Consensus        23 e~~Rw~~lva~~~~~~~~g~~-y~fsv~s~~L~~~lgls~~~l--~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~   98 (591)
T PTZ00207         23 EPRRFALLVLGAFCSICTSFM-YAFNLISGAMQARYNLTQRDL--STITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSM   98 (591)
T ss_pred             ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhCcCHHHH--HHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence            345565555544444444332 345667788999999988777  7887763 445677888999999999999999999


Q ss_pred             HHHHHHHHHHhhh------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHH-HHHhhc
Q 011308          126 LPMIIGASMSAIT------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILV-ALFVGL  198 (489)
Q Consensus       126 ~~~~i~~~~~~~~------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i-~~~~~~  198 (489)
                      +++++++++++++      .+++.+.+.|+++|+|.+...+.....+.+|+| ++||++.++...+.++|..+ +++..+
T Consensus        99 ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~  177 (591)
T PTZ00207         99 TVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLA  177 (591)
T ss_pred             HHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997      689999999999999999999999999999996 67999999999999999976 444444


Q ss_pred             ccccccchHHHHHHHhHHHHHHHHHHh-hcc--cCChhHHHhcCChHHHHHHHHHHh-----------------------
Q 011308          199 PAKEILGWWRICFWVATIPAAFLALFM-EFC--AESPHWLFKRGRGAEAEAELERLF-----------------------  252 (489)
Q Consensus       199 ~l~~~~~~Wr~~f~~~~~~~~~~~~~~-~~~--~e~~~~~~~~~~~~~~~~~~~~~~-----------------------  252 (489)
                      ++.  .+ |+..|++.++..++..++. .++  |+.+++..++++.++.++..++..                       
T Consensus       178 l~~--~~-~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~  254 (591)
T PTZ00207        178 FFS--DN-TSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILII  254 (591)
T ss_pred             HHH--Hh-HHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHH
Confidence            443  34 8888888887777665543 334  443443323322222211100000                       


Q ss_pred             ---------------CC--------------------------------CCc-hHHHHHH---------hhhh-------
Q 011308          253 ---------------GG--------------------------------LHV-KYSMAEL---------SKSE-------  268 (489)
Q Consensus       253 ---------------~~--------------------------------~~~-~~~~~~~---------~~~~-------  268 (489)
                                     ..                                ... +.+.++.         .+.+       
T Consensus       255 l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (591)
T PTZ00207        255 LIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETD  334 (591)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccccccccccc
Confidence                           00                                000 0000000         0000       


Q ss_pred             -h-ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc-CCC--C--Cc-hhHHHHHHHHHHHHH
Q 011308          269 -R-GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA-GVP--S--DS-GNICVGIANLSGSII  340 (489)
Q Consensus       269 -~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~-~~~~~~~~~~~~~~~  340 (489)
                       + ...+...++.+.+++..+|.+++.+++........    ..-+.++.+.. |.+  .  .. ...+.++++.+|++.
T Consensus       335 ~~~~~P~~~~t~~q~l~~~d~Wll~~~~~cg~g~gl~~----~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~  410 (591)
T PTZ00207        335 VDYIAPQFQETFIEGLKTARLWCLLWSIFCCVGAHFVI----IFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLC  410 (591)
T ss_pred             ccCCCCCCcchHHHHHhchhHHHHHHHHHHhhCchhee----eecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHH
Confidence             0 00111126777778888888777766655533322    22233444444 542  2  22 567889999999999


Q ss_pred             HHHHHhhhCCc--------hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC
Q 011308          341 AMILMDKLGRR--------VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF  412 (489)
Q Consensus       341 ~g~l~d~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (489)
                      .|++.....+|        .........+.++.+++.+...        ...+.+..++.+++++..+. +....++|++
T Consensus       411 ~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~p--------~~~L~~~~~lvg~~~G~~~~-~~~~i~selF  481 (591)
T PTZ00207        411 MSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTLP--------KAALPLPYFIAAFANGFMAA-TIALVTRTIF  481 (591)
T ss_pred             HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHCC--------ccHhHHHHHHHHHHhhHhHH-HHHHHHHHHh
Confidence            99987332222        2222222224444444433321        01255566666666665543 5556789999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHh----------c---cchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          413 PNRIRAKAMAVCMAVHWVINFFV-GLLFLRLLEQL----------G---PLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       413 p~~~~~~~~g~~~~~~~~g~~~~-~~~~g~l~~~~----------g---~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      . ++-|+-.-+.....-+|+.+. -.+.|.++|+-          |   ++.+|++.+++++++.+......-++
T Consensus       482 g-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l~~R~  555 (591)
T PTZ00207        482 A-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTYVHLQY  555 (591)
T ss_pred             c-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhheeeeh
Confidence            9 888888888887777777666 66788888753          1   56789999999999887765544343

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.93  E-value=2.1e-24  Score=209.76  Aligned_cols=405  Identities=11%  Similarity=0.042  Sum_probs=230.2

Q ss_pred             HHHHHhhhhccccccccchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~  132 (489)
                      .+++..+...+......+.++ .+.+++|++.++.  +++.+.+........+++|+++|| +|||+++..+.++.+++.
T Consensus        25 ~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a--~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~  102 (500)
T PRK09584         25 LIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS--ITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY  102 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            444444555555444555544 4458899987776  777877776666667899999999 599999999999999999


Q ss_pred             HHHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccc--hhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          133 SMSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV--RGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       133 ~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                      +++++++ +.+.+.++|+++|+|.|...+...+++.|++|+++  |..++++++.+.++|..++|.+++++.+..| ||+
T Consensus       103 ~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g-~~~  181 (500)
T PRK09584        103 ALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG-WSV  181 (500)
T ss_pred             HHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC-HHH
Confidence            9998874 56677788999999999988999999999998643  4567889999999999999999999999888 999


Q ss_pred             HHHHhHHHHHHHHHHhh----cccCChhHHHhcCChHHHHHHHH------------H-HhCCCCchHHHHHHhhhh--hc
Q 011308          210 CFWVATIPAAFLALFME----FCAESPHWLFKRGRGAEAEAELE------------R-LFGGLHVKYSMAELSKSE--RG  270 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~~----~~~e~~~~~~~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~--~~  270 (489)
                      .|++.++..++..+...    .++|.++.  .++++.+..+...            . ..................  ..
T Consensus       182 ~F~i~~i~~~i~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (500)
T PRK09584        182 AFALSVVGMLITVVNFAFCQRWVKQYGSK--PDFEPINYRKLLLTIVGVVALIAIATWLLHNQEIARMALGVVALGIVVI  259 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHhccCCCC--CCccccchhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            99997765444332222    23332110  0000011111000            0 000000000000000000  00


Q ss_pred             cchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh------cCCC--CCchhHHHHHHHHHHHHHHH
Q 011308          271 DEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN------AGVP--SDSGNICVGIANLSGSIIAM  342 (489)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~~~~~~~~~~~~~~~g  342 (489)
                      ........++.-+++... . +..++.....+..+...+.++.....+      .|..  .+....+..+..++..++..
T Consensus       260 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~  337 (500)
T PRK09584        260 FGKEAFAMKGAARRKMIV-A-FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILA  337 (500)
T ss_pred             HHHHHhhcCHHHHHHHHH-H-HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHH
Confidence            000000000000111111 1 111121222222223333332221111      1111  22244455555556666654


Q ss_pred             HHHhhhC----CchhHHHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhH
Q 011308          343 ILMDKLG----RRVLLLGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIR  417 (489)
Q Consensus       343 ~l~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  417 (489)
                      ++-+|.+    ..+.+..+.++.+++++.+......... ...+.++.+....+.+.+- ....|....++.+..|++.|
T Consensus       338 ~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge-~~~~p~g~s~~~~~aP~~~r  416 (500)
T PRK09584        338 AIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGE-LMISGLGLAMVAQLVPQRLM  416 (500)
T ss_pred             HHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCcHHHH
Confidence            4444444    4466777888888887777665432111 1122333444444444443 34456777788999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhccchhhHHHHHHHHHHHHHhh
Q 011308          418 AKAMAVCMAVHWVINFFVGLLFLRLL----------EQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       418 ~~~~g~~~~~~~~g~~~~~~~~g~l~----------~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      |.++|+......+|..++..+.+...          ...++...|...++++++..++.+
T Consensus       417 g~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~  476 (500)
T PRK09584        417 GFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLML  476 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            99999887777777776666654221          112356677777766655544443

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.92  E-value=1.2e-22  Score=189.91  Aligned_cols=375  Identities=20%  Similarity=0.248  Sum_probs=250.7

Q ss_pred             HHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC-chhHhhhhhHHHHHHHHHHh
Q 011308           58 ISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG-RRRAFQLCALPMIIGASMSA  136 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-rr~~l~~~~~~~~i~~~~~~  136 (489)
                      ..+++..+..+...|.++.+.++.|.|..|+  |.+.+...+...++++++|.++||++ +||++.+..++.++...+..
T Consensus         9 ~~~f~~f~~~G~~~p~~~~~L~~~G~s~~qI--G~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~   86 (400)
T PF03825_consen    9 LMYFLYFFAYGAFLPYLPLYLESRGFSGTQI--GILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA   86 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666777888999999999988888  99999999999999999999999986 57888788888888777778


Q ss_pred             hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHh-hcccccccc--hHHHHHHH
Q 011308          137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFV-GLPAKEILG--WWRICFWV  213 (489)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~-~~~l~~~~~--~Wr~~f~~  213 (489)
                      ..++++.+++.-++..+...+..|...++..+...+  +++-.|-.....++|.+++... ++.+....+  ...+.+++
T Consensus        87 ~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i  164 (400)
T PF03825_consen   87 FSSSFWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYI  164 (400)
T ss_pred             HhccHHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHH
Confidence            888999998888888888888888888888888753  2333344444445555544322 111111111  02355666


Q ss_pred             hHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          214 ATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      .+...++.....+.+|+.|+   ++.                          .++..++....+..+++|+|++...++.
T Consensus       165 ~~~~~~ll~~~~l~lp~~~~---~~~--------------------------~~~~~~~~~~~~~~~llk~~~~~~Fll~  215 (400)
T PF03825_consen  165 AAILSLLLAGFALFLPKTPP---KRS--------------------------AKESVKKLLGLDALKLLKNPRFLVFLLA  215 (400)
T ss_pred             HHHHHHHHHHHHHhCCCCcc---ccc--------------------------cCCCcccccchHHHHHhcCccHHHHHHH
Confidence            66665555555556777652   000                          0001111122234568888888766666


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHHHhcC-CCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTVFKNAG-VPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQA  369 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~  369 (489)
                      .++...    .......|.+.++++.| .+...   ...+..+++++.-...+++.+|+|.|+++..+.+..++=..++.
T Consensus       216 ~~l~~~----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  216 AFLIGI----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            655554    34455666677777766 44333   33445577888888999999999999999999888887777766


Q ss_pred             HHhhcccCCCcch-hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhc
Q 011308          370 IAATSFVSSSGAL-SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAV-HWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       370 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~-~~~g~~~~~~~~g~l~~~~g  447 (489)
                      ......    ... ...+....+-+..++.... ....++.+..|++.|+++.++++.. ..+|..+|..++|++.|+.|
T Consensus       292 ~~~~~~----~~~~~~~~l~q~lhG~tf~~~~~-a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g  366 (400)
T PF03825_consen  292 YFSDPW----PFIVALQLLGQLLHGLTFGLFHA-ASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFG  366 (400)
T ss_pred             HhcCCc----HHHHHHHHHHHhhhhHHHHHHHH-HHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Confidence            542110    000 1111222345555554433 3345899999999999999999886 46899999999999999987


Q ss_pred             cch------hhHHHHHHHHHHHHHhhhcccCCC
Q 011308          448 PLI------LYTIFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       448 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~  474 (489)
                      .+.      .+.+.+++.++..++..++.||++
T Consensus       367 ~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~  399 (400)
T PF03825_consen  367 ARGMFDWSAVFLVFAVMALVILVLFVILFKPKH  399 (400)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            553      445555555555555555555443

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=99.91  E-value=9.3e-22  Score=185.99  Aligned_cols=392  Identities=14%  Similarity=0.125  Sum_probs=253.1

Q ss_pred             HHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc----ccCchhHhhhh-hHHHH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD----GIGRRRAFQLC-ALPMI  129 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l~~~-~~~~~  129 (489)
                      .++...+-..+......+.++.+.+++|.+....  +++..+..+...+.+++.|+++|    |+||||.++.+ .....
T Consensus         8 ~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~--~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~   85 (477)
T TIGR01301         8 RVASVAAGVQFGWALQLSLLTPYVQELGIPHAWA--SIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVA   85 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHH
Confidence            3333444445566667777788889999987766  99999999999999999999999    59999998875 66666


Q ss_pred             HHHHHHhhhhhHH-----------------HHHHHHHHHhhcccchhhhHHHHHHhcCCccch--hhHHHHHHHHHHHHH
Q 011308          130 IGASMSAITKNLW-----------------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVR--GAYGSSTQIAACLGI  190 (489)
Q Consensus       130 i~~~~~~~~~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r--~~~~~~~~~~~~~G~  190 (489)
                      ++.++.+++++..                 .++++-.+..++.....+...+++.|.+|+++|  +.+.++.+...++|.
T Consensus        86 ~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~  165 (477)
T TIGR01301        86 FAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGN  165 (477)
T ss_pred             HHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHH
Confidence            6767777766643                 222333344457777788889999999998765  579999999999999


Q ss_pred             HHHHHhhccc--cccc------------chHHHHHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCC
Q 011308          191 LVALFVGLPA--KEIL------------GWWRICFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGL  255 (489)
Q Consensus       191 ~i~~~~~~~l--~~~~------------~~Wr~~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  255 (489)
                      ++|+.+++..  .+..            .+.|+.|++.++..++..+.. +..+|.|..  ..++.++  +         
T Consensus       166 ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~--~~~~~~~--~---------  232 (477)
T TIGR01301       166 VLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI--GSDDFIN--S---------  232 (477)
T ss_pred             HHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC--ccccchh--h---------
Confidence            9999998764  1111            026899999888777766554 457886521  0000000  0         


Q ss_pred             CchHHHHHHhhhhhccchhhhhHHhhhc-----cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh--cCCCC-----
Q 011308          256 HVKYSMAELSKSERGDEADAVKFSELIS-----PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN--AGVPS-----  323 (489)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----  323 (489)
                             +.++.+  +......++++++     ++..+.+.+..++.++.    ...+.+|.+++..+  .+.+.     
T Consensus       233 -------~~~~~~--~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a----~f~~~~y~T~~vg~~v~~~~~~~~~~  299 (477)
T TIGR01301       233 -------EAAPPS--KHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIA----WFPFILFDTDWMGREVYGGSVNQGAK  299 (477)
T ss_pred             -------hccccc--ccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHH----HHHHHHhccHHHHHHHcCCCCcchhH
Confidence                   000000  0001112222222     34455555555555543    33344444444432  11111     


Q ss_pred             ---C----c-hhHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHHhhcccC------------CC-cc
Q 011308          324 ---D----S-GNICVGIANLSGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIAATSFVS------------SS-GA  381 (489)
Q Consensus       324 ---~----~-~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-~~  381 (489)
                         +    . .....++...+.+++..++.+|+|+ |+....+.++.++++....+......+            +. ..
T Consensus       300 y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  379 (477)
T TIGR01301       300 YDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGI  379 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhh
Confidence               1    1 2334445555777778888999985 677688878888777777655431100            00 01


Q ss_pred             hhHHHHHHHHHHHHHhcCCCcchhhhhcccCCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHHH
Q 011308          382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPN--RIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG--PLILYTIFGS  457 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~  457 (489)
                      .+..+..+.+.+..+... ..+.++++++..++  +..|..+|+.|.+..+...+.....|.+.+..|  ....+.+.++
T Consensus       380 ~~~~l~~~~~~Gi~~A~~-~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv  458 (477)
T TIGR01301       380 KASALIVFAILGIPLAIT-YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAV  458 (477)
T ss_pred             HHHHHHHHHHhhHHHHHH-HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHH
Confidence            244455555556655533 34677788888884  456999999999999999999998888777666  4556677777


Q ss_pred             HHHHHHHHhhhcccCCCC
Q 011308          458 FCFLAVIYVKRNVMETKG  475 (489)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~  475 (489)
                      ..++++++.++.+|+++.
T Consensus       459 ~~~~aa~~~~~~~~~~~~  476 (477)
T TIGR01301       459 AAFVSGLLALILLPRPRV  476 (477)
T ss_pred             HHHHHHHHHHHhCCCCCC
Confidence            788888888888887654

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=99.91  E-value=3.9e-24  Score=178.72  Aligned_cols=391  Identities=17%  Similarity=0.116  Sum_probs=248.2

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhh
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCA  125 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~  125 (489)
                      .++...+..+|+..|-++++.........+..+|.+++.++.  .++.+.|..-..+-+++.|++.|| +|-|..-++-+
T Consensus        40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~ni~~akf--tLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~  117 (459)
T KOG4686|consen   40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDSNIEYAKF--TLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILC  117 (459)
T ss_pred             hhHHHHHHHHHHhcccceeecCCchhhhhhhhcccccceeee--eeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHH
Confidence            456777888888889999999888888889999999988888  799999999999999999999996 78777766666


Q ss_pred             HHHHHHHHHHh---hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          126 LPMIIGASMSA---ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       126 ~~~~i~~~~~~---~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                      ....+|.++++   .++.+|++..+|++.|+|.-...++-+.++..|+..||.+.++|+.....-+|..+-..+.+++.+
T Consensus       118 ~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~  197 (459)
T KOG4686|consen  118 IFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYD  197 (459)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHH
Confidence            66677777665   478999999999999999888888889999999999999999999999999998887777777766


Q ss_pred             ccchHHHHH-HHhHHHHHHHHHHhhcccCChhHHHhcCC-hHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHh
Q 011308          203 ILGWWRICF-WVATIPAAFLALFMEFCAESPHWLFKRGR-GAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSE  280 (489)
Q Consensus       203 ~~~~Wr~~f-~~~~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (489)
                      ..+.  ..= ..-..+++...+-...+..+-......+- .+.+++.+.+                 ++....+.....+
T Consensus       198 ~~~~--~~~~~ghT~LG~~l~~~~~tc~~slical~lg~~D~rAerilh~-----------------e~g~~Ge~pkLtd  258 (459)
T KOG4686|consen  198 TMGR--MFPGVGHTLLGLWLCFEVKTCKQSLICALSLGLSDDRAERILHL-----------------EEGFLGEEPKLTD  258 (459)
T ss_pred             HHHH--hcccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhh-----------------hcCcccCCccccc
Confidence            5431  100 00000000000000000000000000110 0111111111                 1111111111111


Q ss_pred             hhc-cccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 011308          281 LIS-PRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLG  356 (489)
Q Consensus       281 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  356 (489)
                      ... .+.+|.+.+.++++....+-.+..-+.+.+   +..|+++..   +.........+.+++.|.++||+|++...+.
T Consensus       259 v~~f~ppfw~~~iicv~yyva~fPFi~lg~~fF~---~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~  335 (459)
T KOG4686|consen  259 VNTFYPPFWVLVIICVLYYVAWFPFITLGPMFFQ---KRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVA  335 (459)
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHhhhhHHHHH---HhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHH
Confidence            111 356676666666665543333333333333   335555444   5555555666788889999999999876654


Q ss_pred             HH-HHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHH
Q 011308          357 SF-LGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFV  435 (489)
Q Consensus       357 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~  435 (489)
                      +. +....+-..+.+....          ....+.+.+..++...- ..+.+++-+.|+++.|++.|.++.+.++|-.+.
T Consensus       336 ~a~~~tl~~H~~l~Ft~ls----------Py~~m~~lGLsysllAc-slWP~va~~vpE~qLGTaygf~qsIqNLgla~i  404 (459)
T KOG4686|consen  336 SACILTLLGHSGLFFTFLS----------PYTSMTFLGLSYSLLAC-SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFI  404 (459)
T ss_pred             HHHHHHHHHhhhHHhhhcc----------HHHHHHHHhhhHHHHHH-HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHH
Confidence            44 3344444444433221          34455555555543321 234567778899999999999999999999999


Q ss_pred             HHHHHHHHHHhc-c---chhhHHHHHHHHHHHHHhhhcccC
Q 011308          436 GLLFLRLLEQLG-P---LILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       436 ~~~~g~l~~~~g-~---~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      |++.|.+.|.-| +   ...|.....+++....+.+...++
T Consensus       405 ~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~N~k  445 (459)
T KOG4686|consen  405 PIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYLNKK  445 (459)
T ss_pred             hhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhheecc
Confidence            999999998766 3   223444444444444444443333

>TIGR00788 fbt folate/biopterin transporter

Probab=99.90  E-value=9.2e-23  Score=196.61  Aligned_cols=382  Identities=14%  Similarity=0.071  Sum_probs=240.2

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC-----chhHhhhhhHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG-----RRRAFQLCALP  127 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~~~~~~  127 (489)
                      ..++...++..++.........|.+.+++|++.++.  +...+...+...+-.+ +|+++||++     ||+.++++.++
T Consensus        28 ~~~~~~~y~~qGl~~l~~~~~~~~l~~~lg~s~~~i--~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l  104 (468)
T TIGR00788        28 LAIGLQVLFVKGIAGLMRLPLSPMLTDDLGLDGARY--QRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLL  104 (468)
T ss_pred             HHHHHHHHHHhhHHHHhhhhhhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHH
Confidence            344455567777773334455667777899999888  8889999999988665 999999998     78878888776


Q ss_pred             HH-HHHHHHhhhhhHHHHH-HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHH---HHHHHHHHHHHhhccccc
Q 011308          128 MI-IGASMSAITKNLWGML-LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQI---AACLGILVALFVGLPAKE  202 (489)
Q Consensus       128 ~~-i~~~~~~~~~~~~~l~-~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~---~~~~G~~i~~~~~~~l~~  202 (489)
                      .+ +.....+..++..... +.+++.+++.+...++..++..|..+ +++....+....   ...+|.++++.+++.+.+
T Consensus       105 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~  183 (468)
T TIGR00788       105 GSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLD  183 (468)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence            63 4434444445544444 48899999999999999999999998 555544333333   345899999999999998


Q ss_pred             ccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308          203 ILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI  282 (489)
Q Consensus       203 ~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (489)
                      ..+ ||..|++.++..++..+...+++|++....++.+.++.... .        .   .. .......++.....++.+
T Consensus       184 ~~~-~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~~~~~-~--------~---~~-~~~~~~~~~~~~~l~~~l  249 (468)
T TIGR00788       184 KTL-TRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYLEMNM-A--------L---LT-LGVLANVKVQILGLRGAI  249 (468)
T ss_pred             hcC-cchHHHHHHHHHHHHHHHHHhcccccccccccccccchhhh-h--------h---hh-hhHHHHHHHHHHHHHHHH
Confidence            888 99999998888777755566677753110001000000000 0        0   00 000000011122344456


Q ss_pred             ccccccchhhhHHH-HHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHH
Q 011308          283 SPRNFGVVFIGSTL-FALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSF  358 (489)
Q Consensus       283 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~  358 (489)
                      ++|..+..+...++ +... ........++.+   +..|.++..   .....+++.+++..+.+++.+|++.|+.+..+.
T Consensus       250 ~~~~i~~~l~fifl~~~~~-~~~~~~~f~~~~---~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~  325 (468)
T TIGR00788       250 QLLEIAKPLIFIFLSYANL-PGASGSVFCATT---QCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTT  325 (468)
T ss_pred             hcHHHHHHHHHHHHHHhhc-CCCCceeEEEEc---ccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence            66666554333333 1111 111110101112   235555554   455566888888889999989999999888888


Q ss_pred             HHHHHHHHHHHHHhhcccCC--CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 011308          359 LGMAIAMGVQAIAATSFVSS--SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG  436 (489)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  436 (489)
                      ++.+++.+........+...  ....+.......+...+.+....+. ..++.+..|++.+|+..|+.+++.++|..+++
T Consensus       326 ~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~~~g~~~~~~-~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~  404 (468)
T TIGR00788       326 LLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEVLAQLKFMPF-LVLLARLCPSGCESSVFALLASILHLGSSVSG  404 (468)
T ss_pred             HHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHHHHHHHHccH-HHHHHHhCCCCceehHHHHHHHHHHHHHHHHH
Confidence            77776654432221111100  0112233334445555555555555 45788999999999999999999999999999


Q ss_pred             HHHHHHHHHhc-----cchhhHHHHH
Q 011308          437 LLFLRLLEQLG-----PLILYTIFGS  457 (489)
Q Consensus       437 ~~~g~l~~~~g-----~~~~~~~~~~  457 (489)
                      .+++.+.+..|     ++..+....+
T Consensus       405 ~~gg~l~~~~g~~~~~~~~~~~~i~i  430 (468)
T TIGR00788       405 FLGVLLMETIGITCDNSNNLWLLILG  430 (468)
T ss_pred             HHHHHHHHHcCCCcccccchHHHHHH
Confidence            99999999888     6555554433

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.90  E-value=3.5e-21  Score=182.88  Aligned_cols=405  Identities=14%  Similarity=0.078  Sum_probs=224.6

Q ss_pred             HHHHHHhhhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-CchhHhhhhhHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-GRRRAFQLCALPMIIG  131 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~  131 (489)
                      ..++...+...+........+|.+ .+++|+++.+.  +.+.+.+.....++++++|+++||+ ||||++.++.++..++
T Consensus        12 ~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a--~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg   89 (493)
T PRK15462         12 YYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHA--YELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIG   89 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHH
Confidence            334444444445544455556655 55688887777  8999999999999999999999999 9999999999999999


Q ss_pred             HHHHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc--chhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308          132 ASMSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY--VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR  208 (489)
Q Consensus       132 ~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr  208 (489)
                      .++.+..+ +...+.++..+.++|.|...+...++++|.+|++  +|..++++...+.++|..++|.+.+++.+..| ||
T Consensus        90 ~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~G-w~  168 (493)
T PRK15462         90 HVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYS-WA  168 (493)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhC-hH
Confidence            87776543 2233444444555666777777889999999875  68999999999999999999999999998888 99


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCChhHH-HhcCChHHHHHHHHHHhCCCCchH-----HHHH-Hhhhhhccch-----h-h
Q 011308          209 ICFWVATIPAAFLALFMEFCAESPHWL-FKRGRGAEAEAELERLFGGLHVKY-----SMAE-LSKSERGDEA-----D-A  275 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~~~~-----~-~  275 (489)
                      +.|.+.++..++..+..++..+..... ..++++.+.++.............     -... ..+......-     . .
T Consensus       169 ~~F~iaaigm~l~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (493)
T PRK15462        169 MGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYALIVATIIGL  248 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987654443333322211110000 000000000000000000000000     0000 0000000000     0 0


Q ss_pred             h----hHHhhhc--cccccchhhh----HHHHHhhhhcchhHHHHhHHHHHHh--cC--CCCCchhHHHHHHHHHHHHHH
Q 011308          276 V----KFSELIS--PRNFGVVFIG----STLFALQQLSGINAVFYFSSTVFKN--AG--VPSDSGNICVGIANLSGSIIA  341 (489)
Q Consensus       276 ~----~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~  341 (489)
                      .    -.+.-.+  .|+....++.    ..+++..+....+.+..|.....+.  .|  .+++....+..+..++.+++.
T Consensus       249 ~~~~~~~~~~~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~  328 (493)
T PRK15462        249 GVLAKIYRKAENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFL  328 (493)
T ss_pred             HHHHHHHHhcCCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHH
Confidence            0    0000000  0111111111    1222222222222333333222211  12  233335666667777777777


Q ss_pred             HHHHhhhCC--ch-----hHHHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC
Q 011308          342 MILMDKLGR--RV-----LLLGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP  413 (489)
Q Consensus       342 g~l~d~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  413 (489)
                      .++-.|..+  |.     -...+.++.+++++++.+....... ...+.++.+....+. .....+..|+..+.++++.|
T Consensus       329 a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~-t~gEl~~sPvgls~~~~laP  407 (493)
T PRK15462        329 AWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVM-GFAELFIDPVAMSQITRIEI  407 (493)
T ss_pred             HHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHH-HHHHHHHChHHHHHHHHhCh
Confidence            777566532  21     2566777778887777665433221 113444444444333 33445677898999999999


Q ss_pred             hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHH------------HhccchhhHHHHHHHHHH
Q 011308          414 NRIRAKAMAVCMAVH-WVINFFVGLLFLRLLE------------QLGPLILYTIFGSFCFLA  462 (489)
Q Consensus       414 ~~~~~~~~g~~~~~~-~~g~~~~~~~~g~l~~------------~~g~~~~~~~~~~~~~~~  462 (489)
                      ++.+|..+|+..... .+|..++..+.+....            ...+...|...+.+.++.
T Consensus       408 ~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~  469 (493)
T PRK15462        408 PGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALAC  469 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHH
Confidence            999999999986533 4555555555443321            012344566666655544

>PRK09669 putative symporter YagG; Provisional

Probab=99.90  E-value=6.5e-22  Score=191.14  Aligned_cols=333  Identities=14%  Similarity=0.103  Sum_probs=212.0

Q ss_pred             hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCch-hHhhhhhHHHHHHHHHHhhhhh------H
Q 011308           73 TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRR-RAFQLCALPMIIGASMSAITKN------L  141 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~  141 (489)
                      ..+.+.+++|++....  |.+.++..+..++..|+.|+++||    +||| +.++.+.+..+++.++....++      +
T Consensus        32 l~~~~t~~~gls~~~~--g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~  109 (444)
T PRK09669         32 LAYFYTDVFGLSAAIM--GTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKI  109 (444)
T ss_pred             HHHHHHHhcCCCHHHH--HHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHH
Confidence            4556778899998877  999999999999999999999998    7874 5555677777777665544432      4


Q ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhccccc-------ccchHHHHHHH
Q 011308          142 WGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAKE-------ILGWWRICFWV  213 (489)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-------~~~~Wr~~f~~  213 (489)
                      ..+++..++.+.+.........++..|+. ++++|.+..++...+..+|..+++.+...+..       ..+ |+..+.+
T Consensus       110 ~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g-~~~~~~i  188 (444)
T PRK09669        110 IYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKG-YFYAMMV  188 (444)
T ss_pred             HHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhh-HHHHHHH
Confidence            45556666667666666666778999988 45889988888888878877777654433222       234 8888888


Q ss_pred             hHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          214 ATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .+++.++..+..++ .+|.++.                                +++++.+....++++++++.++....
T Consensus       189 ~~ii~~v~~~~~~~~~~e~~~~--------------------------------~~~~~~~~~~~~~~~~~n~~~~~l~~  236 (444)
T PRK09669        189 MGLLGVVLFFCCFFMTKERYTP--------------------------------EVDNSSSVWKDLKLLLGNSQWRIMFI  236 (444)
T ss_pred             HHHHHHHHHHHHhCCeEEecCC--------------------------------CCcCCCCHHHHHHHHhCCchHHHHHH
Confidence            77776665544333 4443210                                00011223345677888888877665


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHh
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAA  372 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~  372 (489)
                      ..++.............+|..+.++... ..........+..+++.++.+++.||+|+|+....+.++..+....+.+..
T Consensus       237 ~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~  315 (444)
T PRK09669        237 FNVVLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP  315 (444)
T ss_pred             HHHHHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence            5544433222112222222222221100 001122333466678888899999999999988877665544333222211


Q ss_pred             hcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          373 TSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  445 (489)
                            ..+.+..++...+.+.+.+. ..+..+++++|..+       .+..|...|..+++..+|..+++.+.|.+.+.
T Consensus       316 ------~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~  388 (444)
T PRK09669        316 ------PSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAW  388 (444)
T ss_pred             ------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  12223334444444554443 33566677777764       34457788999999999999999999999998


Q ss_pred             hcc
Q 011308          446 LGP  448 (489)
Q Consensus       446 ~g~  448 (489)
                      .|+
T Consensus       389 ~Gy  391 (444)
T PRK09669        389 VDY  391 (444)
T ss_pred             cCC
Confidence            876

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=99.89  E-value=5e-22  Score=181.78  Aligned_cols=378  Identities=17%  Similarity=0.182  Sum_probs=237.2

Q ss_pred             HHHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH--HH
Q 011308           55 VAIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI--IG  131 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~--i~  131 (489)
                      ......+...+..+...|..|...++ .|++.+++  |.+.++..+...+.+++.|.++||+|.||-++....+..  .+
T Consensus        11 ~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~i--G~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~   88 (412)
T PF01306_consen   11 WLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEI--GIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFG   88 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH--HHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHH--HHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHH
Confidence            33444555556677778888877765 89998888  999999999999999999999999997776554432221  22


Q ss_pred             H-HHHhhh----hhHH-HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          132 A-SMSAIT----KNLW-GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       132 ~-~~~~~~----~~~~-~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      . +...+.    .|++ ..+++-+..|+......|+..+++.++.  ++.+.=.|-.....++|.+++..++|.+.+..+
T Consensus        89 pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p  166 (412)
T PF01306_consen   89 PFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFNINP  166 (412)
T ss_dssp             HHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeeeeCc
Confidence            2 222222    2322 2333444455555666677777766664  333445566667788888999999998887654


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhcc-cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcc
Q 011308          206 WWRICFWVATIPAAFLALFMEFC-AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISP  284 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (489)
                        +..||+....+++..++.++. |+.++....++                         .+..++++.......+++|+
T Consensus       167 --~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~l~k~  219 (412)
T PF01306_consen  167 --NIIFWIASAAAIILLLLLLLLKPDVPPQAEVAD-------------------------ALGAKKDKVSLKDVLSLFKM  219 (412)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHSS---SSSSS-SST-------------------------TSSS------HHHHHHHTTS
T ss_pred             --cHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhc-------------------------ccccCCCCCcHHHHHHHhcc
Confidence              678887666655555444443 33321000000                         00001111122345678888


Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCC----Cc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPS----DS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGS  357 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (489)
                      |++|.+.+.......    .+.......+.++...--+.    ..   ....-.+...+...+..++.+|+|.|+.++++
T Consensus       220 ~~fw~~~l~v~g~~~----~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Llla  295 (412)
T PF01306_consen  220 RNFWFFVLFVIGVAA----IYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLA  295 (412)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             hhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHH
Confidence            988876554443333    23333333333333322222    22   33444467778888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHH-HHHHHHHHHHHH
Q 011308          358 FLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVC-MAVHWVINFFVG  436 (489)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~  436 (489)
                      ..++.+=.++.++...        ++.+...-.+-+..+.....+.. -|+++.+|++..++...+. +...+++..+.+
T Consensus       296 g~i~~iRi~~~~~~~~--------~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s  366 (412)
T PF01306_consen  296 GVIMAIRIIGSGFATN--------PWVISLIKLLHALEFPLLLVAAF-KYITAHFDKRLSATLYLVGFQFAKQIGIIILS  366 (412)
T ss_dssp             HHHHHHHHHHHHT--S--------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhcc--------hHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888777776543        23455555555555554443333 3889999999999999885 678899999999


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308          437 LLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK  476 (489)
Q Consensus       437 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (489)
                      .+.|.+.|+.|++..|++.+.+.++..++..+.+++.++.
T Consensus       367 ~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  367 PLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             hhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            9999999999999999999998888888777776665543

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.89  E-value=9e-21  Score=170.15  Aligned_cols=397  Identities=15%  Similarity=0.074  Sum_probs=270.5

Q ss_pred             CCCcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308           44 PPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQL  123 (489)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~  123 (489)
                      +-.++||.+++..++..+.+.+....+++.......-++ +.+..  -|..-+|++.+....+++-|+.|++|-|..+++
T Consensus        38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~--~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~ll  114 (480)
T KOG2563|consen   38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAA--DWLSMIYMVVSVPFGFAAMWILDKFGLRTALLL  114 (480)
T ss_pred             ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHH--HHHHHHHHHHHHHHhhHHHHhhcccchHHHHHH
Confidence            356788999999999999998888888888877777888 44444  699999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhh------hHH--HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308          124 CALPMIIGASMSAITK------NLW--GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF  195 (489)
Q Consensus       124 ~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  195 (489)
                      +.++.++|..+-..+.      .++  ....+..+.+.++-.....-..+..-||+++||..+..+-..+..+|.+++.+
T Consensus       115 gt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~l  194 (480)
T KOG2563|consen  115 GTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFL  194 (480)
T ss_pred             HHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhh
Confidence            9999999999876653      344  56678888888877777676788889999999999999999999999999999


Q ss_pred             hhccccccc----c-hHHH--HHHHhHHHHHHHHHHh-hcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh
Q 011308          196 VGLPAKEIL----G-WWRI--CFWVATIPAAFLALFM-EFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS  267 (489)
Q Consensus       196 ~~~~l~~~~----~-~Wr~--~f~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (489)
                      +...+..+.    + .|-.  .|+....+..+.+++. +..++.|+.   .  +..+                     ..
T Consensus       195 lppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~t---P--ps~s---------------------~~  248 (480)
T KOG2563|consen  195 LPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPT---P--PSAS---------------------QA  248 (480)
T ss_pred             ccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---C--Cchh---------------------Hh
Confidence            988887654    1 1544  3443343333333332 223332220   0  0000                     00


Q ss_pred             hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCC---CCCchhHHHHHHHHHHHHHHHHH
Q 011308          268 ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGV---PSDSGNICVGIANLSGSIIAMIL  344 (489)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~l  344 (489)
                      ...+..-..+.++.++++++....+++.+...    .++.....+...+...+.   .++....+..+++++++.+.|.+
T Consensus       249 ~~~~~~f~~si~~~~~n~~F~il~~~ygi~~g----~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii  324 (480)
T KOG2563|consen  249 ALQDASFPKSIKSCFKNRQFIILAICYGIGLG----LFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGII  324 (480)
T ss_pred             hhhcCcHHHHHHHHHcCccHHHHHHHHhhhHH----HHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhh
Confidence            00122355678888999988766555544433    344444444433444444   35557778888999999999999


Q ss_pred             HhhhCCc-hhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH
Q 011308          345 MDKLGRR-VLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV  423 (489)
Q Consensus       345 ~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~  423 (489)
                      .||.++- ...+.......++.+. .......   ....+++.... ...+.++.+..|+-..+..|..-|..-++..|+
T Consensus       325 ~Dktk~fk~~~~v~~~~~~v~~~~-l~~~t~~---~~~~viv~~t~-~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGl  399 (480)
T KOG2563|consen  325 ADKTKKFKLTTLVLYLFALVGTLM-LLTCTLF---LGDSVIVFTTC-GLLGFFGTGYLPIGFELGVETTYPVAEGTSSGL  399 (480)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHH-HHHhhcc---CCceEehhhhH-HHHHHhhcCCCCcceeeeeeeccccCCccccee
Confidence            9998753 3344443333333211 1111111   11222233323 333344556778888788888666778999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc----cchhhHHHHHHHHHHHHHhhhcccCCCCCCH
Q 011308          424 CMAVHWVINFFVGLLFLRLLEQLG----PLILYTIFGSFCFLAVIYVKRNVMETKGKTL  478 (489)
Q Consensus       424 ~~~~~~~g~~~~~~~~g~l~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (489)
                      .+..+++-+.+-.++.+...+..+    +...-+.....+++..++..+++++.++++.
T Consensus       400 l~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y~R~~~  458 (480)
T KOG2563|consen  400 LNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDYRRLRA  458 (480)
T ss_pred             EEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhHHhHhh
Confidence            999999999999999999988877    5555556666666666666666655544433

>PF13347 MFS_2: MFS/sugar transport protein

Probab=99.87  E-value=2e-20  Score=179.84  Aligned_cols=338  Identities=17%  Similarity=0.142  Sum_probs=247.3

Q ss_pred             chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc----ccCchhHh-hhhhHHHHHHHHHHhhh-h------
Q 011308           72 ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD----GIGRRRAF-QLCALPMIIGASMSAIT-K------  139 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Grr~~l-~~~~~~~~i~~~~~~~~-~------  139 (489)
                      ...+.+.+.+|+++...  |++..+..+..++..|+.|.++|    |+||||.. +.|.+..+++.+++... +      
T Consensus        23 ~~~~f~~~~~gl~~~~~--g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~  100 (428)
T PF13347_consen   23 YLLYFYTDVLGLSPALA--GLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFT  100 (428)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhh
Confidence            34566677779988777  99999999999999999999999    89976655 46778888877777655 3      


Q ss_pred             -hHHHHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccc------hHHHHH
Q 011308          140 -NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------WWRICF  211 (489)
Q Consensus       140 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~------~Wr~~f  211 (489)
                       ....+.+.-++..++.........++..|..+ +++|.+..+....+..+|..+...+.+.+.+..+      +|++..
T Consensus       101 ~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~  180 (428)
T PF13347_consen  101 AKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMA  180 (428)
T ss_pred             hHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHH
Confidence             23335666777788888888888999999997 5789999999999988888766666666553322      389999


Q ss_pred             HHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccch
Q 011308          212 WVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVV  290 (489)
Q Consensus       212 ~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (489)
                      ++.+++.++..+...+ .+|.++      +                        .++++++.+....+++++++|.++..
T Consensus       181 ~v~~iv~~v~~~i~~~~~ke~~~------~------------------------~~~~~~~~~~~~~~~~~~~nr~~~~l  230 (428)
T PF13347_consen  181 LVLAIVGLVFFLITFFFVKERSV------E------------------------VTEQEKKISLRDSLRSLFRNRPFRIL  230 (428)
T ss_pred             HHHHHHHHHHhhhhhheeeeccc------c------------------------ccccccccccccchhhhcccchHHHH
Confidence            9888888777665444 666211      0                        11112222334567888899998888


Q ss_pred             hhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Q 011308          291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAI  370 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (489)
                      ....++.............+|..+.+++.+. .+.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~-~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~  309 (428)
T PF13347_consen  231 LLAFFLQWLAFALMNTFLPYYFTYVLGNEGL-ISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF  309 (428)
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHHhcCchh-hHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence            8777777666555555666666666655422 223555667888899999999999999999999999998888887776


Q ss_pred             HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          371 AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      ...      .+.+..++...+.+.+.+... ....++.+|..+       ++..|..+|+.++...++..+++.+.+.+.
T Consensus       310 ~~~------~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l  382 (428)
T PF13347_consen  310 LGP------GSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL  382 (428)
T ss_pred             HHh------hhHHHHHHHHHHhHhhhcccc-cccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            642      233445555556666655443 456667777765       344699999999999999999999999998


Q ss_pred             HHhccc
Q 011308          444 EQLGPL  449 (489)
Q Consensus       444 ~~~g~~  449 (489)
                      +..|+.
T Consensus       383 ~~~Gy~  388 (428)
T PF13347_consen  383 ALVGYD  388 (428)
T ss_pred             HHhCcC
Confidence            877653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.86  E-value=7.3e-19  Score=167.64  Aligned_cols=348  Identities=17%  Similarity=0.144  Sum_probs=226.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhh-hHHHHHHHHHHhhh--hhHHHHHHHHHHHhhcccchhhhHHHHHH
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLC-ALPMIIGASMSAIT--KNLWGMLLGRLFVGTGMGIGPAVAALYVS  167 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~  167 (489)
                      ++..++..+..++..|+.|.++|+-|+||.++.. ..+..+++.+..+.  .+++...+.-++.-++.+...+...+++.
T Consensus        73 ~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP  152 (477)
T PF11700_consen   73 LYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLP  152 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            6778888899999999999999999987776655 44445566666553  34544445556666777778888899999


Q ss_pred             hcCCccch--------------------------hhHHHHHHHHHHHHHHHHHHhhcccccccch-------HHHHHHHh
Q 011308          168 EVSPAYVR--------------------------GAYGSSTQIAACLGILVALFVGLPAKEILGW-------WRICFWVA  214 (489)
Q Consensus       168 ~~~~~~~r--------------------------~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-------Wr~~f~~~  214 (489)
                      |..+++++                          ++..+.-.....+|.++...+.-.+....+.       -|..+.+.
T Consensus       153 ~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~  232 (477)
T PF11700_consen  153 DLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIV  232 (477)
T ss_pred             hhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHH
Confidence            99998888                          8888888888888887776665444322111       48888887


Q ss_pred             HHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          215 TIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++.-++..+. .+++||.|+....++..+-.+.                       .-++-...++++.+.|.....+++
T Consensus       233 a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~-----------------------g~~~l~~t~k~~~~~~~~~~fLia  289 (477)
T PF11700_consen  233 ALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRF-----------------------GFKRLWRTFKEIRKLRQLFLFLIA  289 (477)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHH-----------------------HHHHHHHHHHHHHhChHHHHHHHH
Confidence            7776665544 4557776541000000000000                       011122344555555555555555


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRR--VLLLGSFLGMAIAMGV  367 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~  367 (489)
                      .+++.-    +.+.+..+...+.. ..+++...   ..+...+.+++|+++.+++.||+|.|  +++..+.....+..+.
T Consensus       290 ~~l~~d----g~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~  365 (477)
T PF11700_consen  290 YFLYSD----GVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLY  365 (477)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            554443    33334333333333 56776665   55666788999999999999999988  6766665544322222


Q ss_pred             HHH--HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          368 QAI--AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ  445 (489)
Q Consensus       368 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~  445 (489)
                      -.+  ....  ....+.+...+..++.+...+ +..+...++.+|+.|+++.+..+|++.......+.+||.+.|.+.+.
T Consensus       366 g~~G~~~~~--~g~~~~~~f~~~a~~~G~~~G-~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~  442 (477)
T PF11700_consen  366 GLFGFWPSF--FGLKSPWEFWVLAVLIGLFMG-GIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDA  442 (477)
T ss_pred             HHHHhhhcc--cCcccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111  1111  111222333333444444443 44567788999999999999999999999999999999999999999


Q ss_pred             hc-cchhhHHHHHHHHHHHHHhhh
Q 011308          446 LG-PLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       446 ~g-~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .| .+..+....++.+++.++++.
T Consensus       443 tg~~r~g~~~l~~lf~~gl~ll~~  466 (477)
T PF11700_consen  443 TGSQRYGFLFLLVLFLIGLILLFF  466 (477)
T ss_pred             hCCchhHHHHHHHHHHHHHHHHhh
Confidence            88 677788888888887776653

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=99.86  E-value=3.2e-20  Score=180.41  Aligned_cols=347  Identities=14%  Similarity=0.071  Sum_probs=212.1

Q ss_pred             ccccccccch-hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc----ccCc-hhHhhhhhHHHHHHHHHHhh
Q 011308           64 GYHLGVVNET-LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD----GIGR-RRAFQLCALPMIIGASMSAI  137 (489)
Q Consensus        64 ~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d----r~Gr-r~~l~~~~~~~~i~~~~~~~  137 (489)
                      .+....+.+. ...+.+.+|++....  |.+..+..+.-++..|+.|.++|    |+|| |+.++.+.+..+++..+.-.
T Consensus        19 ~~~~~~~~~~l~~yyt~v~Gls~~~v--g~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~   96 (473)
T PRK10429         19 DFAIGIVYMYLMYYYTDVVGLSVGLV--GTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS   96 (473)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc
Confidence            3333344443 345566679988777  99999999999999999999999    6699 56666787777777655543


Q ss_pred             hh------hHHHHHHHHHHHhhcccchhhhHHHHHHhcC-CccchhhHHHHHHHHHHHHHHHHHHhhcccc-------cc
Q 011308          138 TK------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVS-PAYVRGAYGSSTQIAACLGILVALFVGLPAK-------EI  203 (489)
Q Consensus       138 ~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~-~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-------~~  203 (489)
                      .+      .+..+++.-++.+++.....+...++..|.. ++++|.+..++...+.++|..+.+.+...+.       +.
T Consensus        97 ~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~  176 (473)
T PRK10429         97 AHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRG  176 (473)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence            22      1334555566777777777888889999998 5889999988877766766555544433221       12


Q ss_pred             cchHHHHHHHhHHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhh
Q 011308          204 LGWWRICFWVATIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELI  282 (489)
Q Consensus       204 ~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (489)
                      .+ |+....+.++..++..+..++ .+|.++.    .+.                       ..+++++.+....++.++
T Consensus       177 ~g-~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~-----------------------~~~~~~~~~~~~~~~~~~  228 (473)
T PRK10429        177 FG-FQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQ-----------------------VSAEGSHLTLKDIVALIY  228 (473)
T ss_pred             hh-HHHHHHHHHHHHHHHHHHHHcCceecCCc----ccc-----------------------ccccccCCCHHHHHHHHh
Confidence            23 777777766666654444333 5654310    000                       000011112233455566


Q ss_pred             ccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308          283 SPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFL  359 (489)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (489)
                      +++.++..+...++......    ....+.+++.+....+...   ......+..+++.++.+++.||+|+|+.+..+..
T Consensus       229 ~n~~~~~ll~~~~~~~~~~~----~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~  304 (473)
T PRK10429        229 KNDQLSCLLGMALAYNIASN----IINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASI  304 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHH----HHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            77776655555444443222    2222222222222112222   3334457778888999999999999999887777


Q ss_pred             HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHH
Q 011308          360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVIN  432 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~  432 (489)
                      +..++.+.+.+....   ...+.+..++...+.+.+.+.. .+...++++|..+       .+..|..+|...++..++.
T Consensus       305 ~~~~~~~~~~~~~~~---~~~~~~~~~i~~~l~g~~~~~~-~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~  380 (473)
T PRK10429        305 FPVLSCGVLLLMGLA---APHNALLIVIAGILLNIGTALF-WVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGS  380 (473)
T ss_pred             HHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHH
Confidence            655554444322111   1122233333334444444332 2445557777744       4456779999999999999


Q ss_pred             HHHHHHHHHHHHHhcc
Q 011308          433 FFVGLLFLRLLEQLGP  448 (489)
Q Consensus       433 ~~~~~~~g~l~~~~g~  448 (489)
                      .+++.+.|.+.+..|+
T Consensus       381 al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        381 AFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999988776

>PRK09848 glucuronide transporter; Provisional

Probab=99.85  E-value=1.5e-19  Score=175.01  Aligned_cols=330  Identities=13%  Similarity=0.110  Sum_probs=195.2

Q ss_pred             hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc----CchhHh-hhhhHHHHHHHHHH-hh----hhh--H
Q 011308           74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI----GRRRAF-QLCALPMIIGASMS-AI----TKN--L  141 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~----Grr~~l-~~~~~~~~i~~~~~-~~----~~~--~  141 (489)
                      .+.+.+.+|++..+.  |.+.+...+..++..++.|+++||.    ||||.. ..+.+...+..++. ..    +++  .
T Consensus        32 ~~y~~~~~gl~~~~~--g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (448)
T PRK09848         32 LSYYTDVAGVGAAAA--GTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKV  109 (448)
T ss_pred             HHHHHHHcCCCHHHH--HHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHH
Confidence            346667779887777  9999999999999999999999996    777754 55555444444432 21    111  2


Q ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHH-----HHHHHHHHHHhhcccccccc-hHHHHHHHh
Q 011308          142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIA-----ACLGILVALFVGLPAKEILG-WWRICFWVA  214 (489)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~-----~~~G~~i~~~~~~~l~~~~~-~Wr~~f~~~  214 (489)
                      ..+++.-++.+++.+...+...++..+..+ +++|.+..+.-..+     ..++..++|.++........ .|.....+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~  189 (448)
T PRK09848        110 VYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVL  189 (448)
T ss_pred             HHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHH
Confidence            233445567777777777777777777664 46788876665543     33555566666554322111 021111222


Q ss_pred             HHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          215 TIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++..++..+. ....+|+++    +                             +.++......++++++++.++...+.
T Consensus       190 ~v~~~~~~~~~~~~~~e~~~----~-----------------------------~~~~~~~~~~~~~l~~n~~f~~~~~~  236 (448)
T PRK09848        190 AIAGMVLYFICFKSTRENVV----R-----------------------------IVAQPSLKISLQTLKRNRPLFMLCIG  236 (448)
T ss_pred             HHHHHHHHHHHHcCcEeccC----C-----------------------------CccCCCHHHHHHHHhCCchHHHHHHH
Confidence            3333322222 223455421    0                             00011223346778888888766655


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc--h-hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTVFKNAGVPSDS--G-NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAI  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (489)
                      .++............++|..+.   .+.+...  . .....++.+++.++.+++.||+++|+.+..+.++..++.+.+.+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~  313 (448)
T PRK09848        237 ALCVLISTFAVSASSLFYVRYV---LNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW  313 (448)
T ss_pred             HHHHHHHHHHHhhhheeeEeee---cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence            5555443322222223332222   2222222  1 12223556778889999999999999999888877777665543


Q ss_pred             HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          371 AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR-------IRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      ..      ..+.+..+....+.+.+.+... +...++..|..|.+       .+|...|+.++...+|..+++.+.+.+.
T Consensus       314 ~~------~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l  386 (448)
T PRK09848        314 VS------VWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFIL  386 (448)
T ss_pred             cC------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21      1222333333444444444333 34455666766533       4699999999999999999999999998


Q ss_pred             HHhcc
Q 011308          444 EQLGP  448 (489)
Q Consensus       444 ~~~g~  448 (489)
                      +..|+
T Consensus       387 ~~~G~  391 (448)
T PRK09848        387 GLSGY  391 (448)
T ss_pred             HHcCC
Confidence            87765

>PRK11462 putative transporter; Provisional

Probab=99.83  E-value=1.6e-18  Score=167.21  Aligned_cols=332  Identities=14%  Similarity=0.072  Sum_probs=205.2

Q ss_pred             hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchhHh-hhhhHHHHHHHHHHhhhhh------HH
Q 011308           74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRRRAF-QLCALPMIIGASMSAITKN------LW  142 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l-~~~~~~~~i~~~~~~~~~~------~~  142 (489)
                      ...+.+..|+++...  |.+..+.-+--++.-|+.|.++||    +||||.. +++.+..+++.+++-..++      ..
T Consensus        33 ~~fyt~~~Gl~~~~~--g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~  110 (460)
T PRK11462         33 MFFYTDIFGIPAGFV--GTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMI  110 (460)
T ss_pred             HHHHHHhhCCCHHHH--HHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHH
Confidence            445667789887777  899999999999999999999995    7986554 5666777777666544332      33


Q ss_pred             HHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccc------hHHHHHHHhH
Q 011308          143 GMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------WWRICFWVAT  215 (489)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~------~Wr~~f~~~~  215 (489)
                      .+.+.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+...+.+..+      .|+....+.+
T Consensus       111 y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~  190 (460)
T PRK11462        111 YAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLS  190 (460)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence            45555666677777777778888999887 7899999999999999888777666544333221      2777777767


Q ss_pred             HHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhH
Q 011308          216 IPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGS  294 (489)
Q Consensus       216 ~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (489)
                      ++.+++.+..++ .+|.++.                                 ++++......++..++++.++.+....
T Consensus       191 ii~~i~~~i~~~~~kE~~~~---------------------------------~~~~~~~~~~l~~~~~Nk~~~~l~~~~  237 (460)
T PRK11462        191 VVAFMMLAFCFFTTKERVEA---------------------------------PPTTTSMREDLRDIWQNDQWRIVGLLT  237 (460)
T ss_pred             HHHHHHHHHHHhcceeccCC---------------------------------CccCCCHHHHHHHHhCChHHHHHHHHH
Confidence            666555444333 4443210                                 000111233456677787776555444


Q ss_pred             HHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhc
Q 011308          295 TLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATS  374 (489)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (489)
                      ++.............+|..+..+... ..........+..+++.++++++.||+++|+....+.....+..+++.+..  
T Consensus       238 ~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~--  314 (460)
T PRK11462        238 IFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVP--  314 (460)
T ss_pred             HHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc--
Confidence            44433333333334444444332211 111244456677888999999999999998887655443333222222221  


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                          ..+....+...++.+.+.+ ...+..+++..|..+       .+..|...+...+...+|..+++.+.|.+.+..|
T Consensus       315 ----~~~~~~~~~~~~l~g~~~~-~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G  389 (460)
T PRK11462        315 ----MQASITMFVFIFVIGVLHQ-LVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG  389 (460)
T ss_pred             ----hhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence                1111112222233333322 223344556666544       3445666788889999999999999999998766


Q ss_pred             c
Q 011308          448 P  448 (489)
Q Consensus       448 ~  448 (489)
                      +
T Consensus       390 y  390 (460)
T PRK11462        390 Y  390 (460)
T ss_pred             C
Confidence            5

>TIGR01272 gluP glucose/galactose transporter

Probab=99.83  E-value=4.3e-19  Score=161.68  Aligned_cols=274  Identities=17%  Similarity=0.085  Sum_probs=180.5

Q ss_pred             hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc------------
Q 011308          137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL------------  204 (489)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~------------  204 (489)
                      ...+|+.++++-++.|.|.+...+..+.++.+..+++++++.+++.+..+++|..++|.+++.+....            
T Consensus         6 ~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~   85 (310)
T TIGR01272         6 SQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATAN   85 (310)
T ss_pred             HhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhh
Confidence            45789999999999999999999999999999999999999999999999999999999999777321            


Q ss_pred             ---chHHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHH
Q 011308          205 ---GWWRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFS  279 (489)
Q Consensus       205 ---~~Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (489)
                         .+||++|++.+...++..+.+.+  +||..+     ++.++.                    .+   ++.   ...+
T Consensus        86 ~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~-----~~~~~~--------------------~~---~~~---~~~~  134 (310)
T TIGR01272        86 AEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE-----ADVARV--------------------SS---GDT---TQKT  134 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc--------------------cc---ccc---cchh
Confidence               23999999776665555444433  344311     000000                    00   000   0112


Q ss_pred             hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh---cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchh
Q 011308          280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN---AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVL  353 (489)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~  353 (489)
                      +.++++.++...+..+++...    ......|.+.++.+   .+.+...   .......+..+|+++++++.||+++|+.
T Consensus       135 ~~~~~~~~~l~~~~~f~yvg~----e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~  210 (310)
T TIGR01272       135 SAFQFTHLVLGALGIFVYVGA----EVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY  210 (310)
T ss_pred             hHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence            244455555444444444433    33444455555543   3555433   5556677888999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHH
Q 011308          354 LLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINF  433 (489)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~  433 (489)
                      +..+..+..++.++......         ........+.+++.+. ..|...+...+..|+ +.+++.++. ....+|+.
T Consensus       211 l~~~~~l~~~~~~l~~~~~~---------~~~~~~~~l~g~~~s~-i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~  278 (310)
T TIGR01272       211 LAFNAFLAVLLSIGAALTHG---------YVAMWFVLALGLFNSI-MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGA  278 (310)
T ss_pred             HHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcch
Confidence            87777666665533332211         1122233344444433 345555566676674 467777775 67789999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHH
Q 011308          434 FVGLLFLRLLEQLGPLILYTIFGS  457 (489)
Q Consensus       434 ~~~~~~g~l~~~~g~~~~~~~~~~  457 (489)
                      +.|.+.|.+.|..|.+..+++...
T Consensus       279 i~P~l~G~lad~~g~~~a~~v~~~  302 (310)
T TIGR01272       279 IVPLLQGSLADCLGIQLAFALPVP  302 (310)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHH
Confidence            999999999999998777764433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=99.82  E-value=1.6e-18  Score=160.28  Aligned_cols=337  Identities=18%  Similarity=0.161  Sum_probs=235.7

Q ss_pred             hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCch-hHhhhhhHHHHHHHHHHhhhhh------HH
Q 011308           74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRR-RAFQLCALPMIIGASMSAITKN------LW  142 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~  142 (489)
                      +-.+.+.+|++....  |.+..+.-+--++.-|+.|.+.||    +||+ +.++.+.+-.++.+.++-.+++      ..
T Consensus        36 l~fYTdv~Gis~~~a--G~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~  113 (467)
T COG2211          36 LFFYTDVFGLSAALA--GTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLI  113 (467)
T ss_pred             HHHHhcccCCcHHHH--HHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchH
Confidence            345667789888777  888888888889999999999995    7874 5566777888888888776663      44


Q ss_pred             HHHHHHHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhccccc-------ccchHHHHHHHh
Q 011308          143 GMLLGRLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKE-------ILGWWRICFWVA  214 (489)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~-------~~~~Wr~~f~~~  214 (489)
                      ..++.-.+.+++.......-.++..++.+ ++||.+..+.-+.+..+|..+...+...+..       ..| |+..-.+.
T Consensus       114 ya~vtY~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g-~~~~~~~~  192 (467)
T COG2211         114 YALVTYMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALG-YQGTALVL  192 (467)
T ss_pred             HHHHHHHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhh-HHHHHHHH
Confidence            45566788888888888888888888875 6889999999999998886665554443332       224 78777777


Q ss_pred             HHHHHHHHHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          215 TIPAAFLALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       215 ~~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      ++++++..+..++ .+|.+.   +++                         ..++..+.+....+..+++|+.+....+.
T Consensus       193 ~vi~~i~~l~~~~~v~ER~~---~~~-------------------------~~~~~~~~~~~~~~~~~~~Nrp~~~~l~~  244 (467)
T COG2211         193 GVIGVILLLFCFFNVKERVV---ETQ-------------------------PTKTGVKLKLKDSFLLIFKNRPLLLLLLM  244 (467)
T ss_pred             HHHHHHHHHHHHHHhhcccC---ccc-------------------------cCcccccccHHHHHHHHHccchHHHHHHH
Confidence            7777766665554 555432   000                         00001122233445567888888877765


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308          294 STLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT  373 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (489)
                      ..+.............+|..+.+++..............+.+++.++..++.+|+|+|++...+.++..++.+++.+.. 
T Consensus       245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~-  323 (467)
T COG2211         245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP-  323 (467)
T ss_pred             HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc-
Confidence            5555554444444555555555444433333355555666677789999999999999999999999998888887765 


Q ss_pred             cccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCC-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011308          374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFP-------NRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL  446 (489)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~  446 (489)
                           .++....++..++.+.+.+ ...++.+++++|...       .+..|...|...++..+|.+++..+.|++.+..
T Consensus       324 -----~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~  397 (467)
T COG2211         324 -----AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAI  397 (467)
T ss_pred             -----CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                 2233334444444444444 345677888887743       455689999999999999999999999999887


Q ss_pred             cc
Q 011308          447 GP  448 (489)
Q Consensus       447 g~  448 (489)
                      ||
T Consensus       398 Gy  399 (467)
T COG2211         398 GY  399 (467)
T ss_pred             CC
Confidence            74

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.81  E-value=2.3e-17  Score=151.16  Aligned_cols=409  Identities=15%  Similarity=0.105  Sum_probs=253.3

Q ss_pred             HHHHHHHhhhhccccccccch-hhhhhhccc----ccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhH
Q 011308           53 VLVAIISSFLFGYHLGVVNET-LESISLDLG----FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCAL  126 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~----~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~  126 (489)
                      +..++..-+...++.+-+... .-.+..+++    .++++.  .-+.+.|..-.-+...++|+++|| +|+|+.+..|.+
T Consensus        23 l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A--~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGai  100 (498)
T COG3104          23 LYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHA--TGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAI  100 (498)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            445555566666655544333 334444444    777766  566777777677889999999999 599999999999


Q ss_pred             HHHHHHHHHhhhh--hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc--chhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          127 PMIIGASMSAITK--NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY--VRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       127 ~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~--~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                      +..+|.++.+.+.  +...++++-++.++|.|..-+....++.|.+|++  +|-..++++.++.++|..++|++.+++.+
T Consensus       101 l~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~  180 (498)
T COG3104         101 LMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAI  180 (498)
T ss_pred             HHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHH
Confidence            9999999999884  7889999999999999999999999999999854  47788999999999999999999999999


Q ss_pred             ccchHHHHHHHhHHHHHHHHHHhhcccCC---------hhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhh------
Q 011308          203 ILGWWRICFWVATIPAAFLALFMEFCAES---------PHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKS------  267 (489)
Q Consensus       203 ~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  267 (489)
                      ..+ |...|.+.++-..+.++..+..+..         +..+..+.................  .......+..      
T Consensus       181 ~~g-~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~  257 (498)
T COG3104         181 NYG-WHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAAL--LTLLLNQNTFSGVLLV  257 (498)
T ss_pred             hhC-HHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            999 9999999887766665554443321         111101111000000000000000  0000000000      


Q ss_pred             ----------hhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc--C--CCCCchhHHHHHH
Q 011308          268 ----------ERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA--G--VPSDSGNICVGIA  333 (489)
Q Consensus       268 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~  333 (489)
                                .+....++.. .+--|-.....+++...+++..+....+.+..|.....+..  |  +++.....+..+.
T Consensus       258 ~~i~~~~~~~~~~~~~~~~~-~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~  336 (498)
T COG3104         258 ISILIAIIYFAEAFRSPKVF-DERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF  336 (498)
T ss_pred             HHHHHHHHHHHHHhccCccH-HHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHH
Confidence                      0000000000 00000011222333344444444444555555555544432  1  3344466666777


Q ss_pred             HHHHHHHHHHHHhhhCCc-------hhHHHHHHHHHHHHHHHHHHhhcccC-C-CcchhHHHHHHHHHHHHHhcCCCcch
Q 011308          334 NLSGSIIAMILMDKLGRR-------VLLLGSFLGMAIAMGVQAIAATSFVS-S-SGALSLSLGGMLLFVLTFSLGAGPVP  404 (489)
Q Consensus       334 ~~~~~~~~g~l~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (489)
                      -++.+++..++..|.+++       .-...+..++..+++++......... . ..+.++.+. ..++....-++..|+.
T Consensus       337 Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil-~y~l~s~gEL~iSpvG  415 (498)
T COG3104         337 IILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVL-SYVLQSFGELFISPVG  415 (498)
T ss_pred             HHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHH-HHHHHHHHHHHhCHHH
Confidence            778887777777774432       12345556666666666555222221 2 234444444 3444444456777888


Q ss_pred             hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR------LLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~------l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ..++..+.|+...+..+++.......+..++..+.+.      ..+.......|...+.+.++.....+.
T Consensus       416 Ls~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~  485 (498)
T COG3104         416 LSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLL  485 (498)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999888888888887763      334445556677777776666655543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=99.81  E-value=1.3e-18  Score=161.24  Aligned_cols=394  Identities=16%  Similarity=0.195  Sum_probs=230.8

Q ss_pred             CcchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCc-hhHhhhh
Q 011308           46 WSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGR-RRAFQLC  124 (489)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Gr-r~~l~~~  124 (489)
                      .+..|+.+.+..+.+++.....+++.+..-.+.++++.+.+....|++.++..++.++++++.|++..|.+. |+.++.+
T Consensus        29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s  108 (488)
T KOG2325|consen   29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVS  108 (488)
T ss_pred             cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHH
Confidence            355677888888889999999888888776677775555454455999999999999999999999999997 8889999


Q ss_pred             hHHHHHHHHHH-hh---hh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 011308          125 ALPMIIGASMS-AI---TK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP  199 (489)
Q Consensus       125 ~~~~~i~~~~~-~~---~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  199 (489)
                      .++..+++++. ++   .+ .-+.++++|++.|+|.|. .....+++++....++|.++++....+..+|..+||.++..
T Consensus       109 ~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~  187 (488)
T KOG2325|consen  109 FLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLA  187 (488)
T ss_pred             HHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHH
Confidence            99999999988 33   23 677889999999999654 56889999998888999999999988888888888877655


Q ss_pred             ccccc--c----------hHHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhh
Q 011308          200 AKEIL--G----------WWRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSK  266 (489)
Q Consensus       200 l~~~~--~----------~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (489)
                      +....  |          .+..+=|+.+++.++.++... +++|.++....++.+++                  ++.+.
T Consensus       188 f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------------------~~~~~  249 (488)
T KOG2325|consen  188 FTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------------------EEEKS  249 (488)
T ss_pred             HhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc------------------hhhcc
Confidence            43211  0          034555667777666655543 46776542111111000                  00000


Q ss_pred             hhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc----hhHHHHHHHHHHHHH--
Q 011308          267 SERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS----GNICVGIANLSGSII--  340 (489)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--  340 (489)
                      +.+..+         ..+..+...+++........+.....-....+......+.....    ......+.+++...+  
T Consensus       250 ~~~~~~---------~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l  320 (488)
T KOG2325|consen  250 DIEKVK---------KPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLL  320 (488)
T ss_pred             chhhhc---------cCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHH
Confidence            000000         00112222222222222222222221222222222333333332    222333333333222  


Q ss_pred             -HHHHH-hhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC-----------------------CcchhHHHHH-HHHHHH
Q 011308          341 -AMILM-DKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS-----------------------SGALSLSLGG-MLLFVL  394 (489)
Q Consensus       341 -~g~l~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~~~~  394 (489)
                       ..... .++.+|..+..+.........+..........+                       ..+.+..+.. .++++.
T Consensus       321 ~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~  400 (488)
T KOG2325|consen  321 LYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGI  400 (488)
T ss_pred             HHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheecc
Confidence             22221 233445555555333333322221111110000                       0001111111 111111


Q ss_pred             HHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          395 TFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ++-. ......+.-+|...+++++++.|++......+..++|.+........|++..+.+.++..++...+...
T Consensus       401 ~~P~-~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~~~  473 (488)
T KOG2325|consen  401 AFPF-ISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALWIV  473 (488)
T ss_pred             cccc-ccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence            1111 112234466788888999999999999999999999999999999999988877776666655544433

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.76  E-value=3e-16  Score=140.67  Aligned_cols=346  Identities=15%  Similarity=0.102  Sum_probs=225.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhh-hHHHHHHHHHHhhhhh--H-HHHHHHHHHHhhcccchhhhHH
Q 011308           88 MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLC-ALPMIIGASMSAITKN--L-WGMLLGRLFVGTGMGIGPAVAA  163 (489)
Q Consensus        88 ~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~-~~~~~i~~~~~~~~~~--~-~~l~~~r~l~G~~~~~~~~~~~  163 (489)
                      ...|...++..+..++.+++.|.++|+.|+||..... ..+..++..+..++++  + +..++.-.+..++.....+...
T Consensus        58 a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyd  137 (438)
T COG2270          58 AYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYD  137 (438)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehh
Confidence            3357788888899999999999999999987666544 4455555555555544  4 4445567888888888888999


Q ss_pred             HHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhh---cccc---------------cccchHHHHHHHhHHHHHHHHHH-
Q 011308          164 LYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG---LPAK---------------EILGWWRICFWVATIPAAFLALF-  224 (489)
Q Consensus       164 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~---~~l~---------------~~~~~Wr~~f~~~~~~~~~~~~~-  224 (489)
                      +++.+..++++-++..++-.....+|.++.-++.   ....               +... =|..+.+.++-.++..+- 
T Consensus       138 s~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~ri~~~l~A~W~li~~iPm  216 (438)
T COG2270         138 SMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGED-VRITGLLAALWWLLFALPM  216 (438)
T ss_pred             hHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCcccccc-chhHHHHHHHHHHHHHhHH
Confidence            9999999998888777766665566655544432   0011               1222 577777777766665543 


Q ss_pred             hhcccCChhHHHhcCCh-HHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhc
Q 011308          225 MEFCAESPHWLFKRGRG-AEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLS  303 (489)
Q Consensus       225 ~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (489)
                      ++..+|.++   .+.+. +..+                       ..-++-..+++++.++++....+++.+++.-    
T Consensus       217 ~~~v~~~~~---~~~~~~~~l~-----------------------~g~k~L~~t~k~i~~~~~i~~FLiA~~~~~D----  266 (438)
T COG2270         217 ILNVHDAEK---ISSPPPTALR-----------------------NGFKELKSTFKEIRGRKNLVLFLIARFFYID----  266 (438)
T ss_pred             Hhccccccc---ccccchHHHH-----------------------HHHHHHHHHHHHHhcccchHHHHHHHHHHHh----
Confidence            344555442   00000 0000                       1112234457777777777766666655544    


Q ss_pred             chhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          304 GINAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       304 ~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      +.+.+..+...+-. +.|.+...   ......+..++|+++.|++.||++.|+++..+.++..+..+...+....     
T Consensus       267 Gv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~-----  341 (438)
T COG2270         267 GVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGE-----  341 (438)
T ss_pred             hHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHcccc-----
Confidence            34444444444433 57777666   4556678889999999999999999998888877776665554443221     


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHH
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSF  458 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~  458 (489)
                         ........+.+...+ +.....-.+..+++|+++.++.+|+++..+...+..||...+.+.+.+| .+..+....++
T Consensus       342 ---~~f~i~gll~g~s~G-~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vl  417 (438)
T COG2270         342 ---LDFWILGLLVGTSLG-GAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVL  417 (438)
T ss_pred             ---HHHHHHHHHHHHhcc-hHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence               112222233333333 3455677899999999999999999999999999999999999998877 44455555555


Q ss_pred             HHHHHHHhhhcccCCC
Q 011308          459 CFLAVIYVKRNVMETK  474 (489)
Q Consensus       459 ~~~~~~~~~~~~~~~~  474 (489)
                      ..++.+++. ..|+.+
T Consensus       418 l~iGl~~L~-~v~~~~  432 (438)
T COG2270         418 LLIGLLLLL-RVKVPG  432 (438)
T ss_pred             HHhhHhhEE-eecCCC
Confidence            555555444 344443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=3.4e-16  Score=151.23  Aligned_cols=304  Identities=17%  Similarity=0.199  Sum_probs=215.1

Q ss_pred             hHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHH
Q 011308           51 PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMII  130 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i  130 (489)
                      ..+.++++..+..++..+.+...+..+.+.|+++.++.  |++.+.+-++..+...+..+..-|.-|-+.+-.|++++++
T Consensus        97 ~fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~s--G~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~l  174 (735)
T KOG3626|consen   97 MFLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQS--GLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGL  174 (735)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcc--eeEeeecccchhhhhHhHHHhccccCccceeeechhHHHH
Confidence            34556667777778877888889999999999999887  9999999999999999999999999999999999999999


Q ss_pred             HHHHHhhh--------------------h-----------------------------h--HH-HHHHHHHHHhhcccch
Q 011308          131 GASMSAIT--------------------K-----------------------------N--LW-GMLLGRLFVGTGMGIG  158 (489)
Q Consensus       131 ~~~~~~~~--------------------~-----------------------------~--~~-~l~~~r~l~G~~~~~~  158 (489)
                      +++++++-                    +                             +  ++ .++++.++.|+|....
T Consensus       175 gsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi  254 (735)
T KOG3626|consen  175 GSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPI  254 (735)
T ss_pred             HHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCC
Confidence            99998761                    0                             0  22 4666899999999999


Q ss_pred             hhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc------------------hHHHHHHHhHHHHHH
Q 011308          159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG------------------WWRICFWVATIPAAF  220 (489)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~------------------~Wr~~f~~~~~~~~~  220 (489)
                      ++...+|+-|...+++-+..+|+......+|.++|.++++++...+.                  -|..-|++.+.+.++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988764321                  188888888888888


Q ss_pred             HHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhh
Q 011308          221 LALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ  300 (489)
Q Consensus       221 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      ..+.++++|...+   +..++.++++ ....   .......++.....+.-++-+...+++++++.+....++..+-.  
T Consensus       335 ~a~p~f~fPk~lp---~~~~~~~~~~-~~~~---k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~--  405 (735)
T KOG3626|consen  335 SAVPLFFFPKELP---KSQKRKRARD-LHVL---KTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIES--  405 (735)
T ss_pred             HHHHHHhCcccCc---cccccchhhh-hccc---ccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHH--
Confidence            8888888876543   1111111100 0000   00000000000000111234456777888887665555444433  


Q ss_pred             hhcchhHHHHhHHHHHHh-cCCCCCchhHHHHH----HHHHHHHHHHHHHhhhC--CchhHHHHHHHHHHHHHH
Q 011308          301 QLSGINAVFYFSSTVFKN-AGVPSDSGNICVGI----ANLSGSIIAMILMDKLG--RRVLLLGSFLGMAIAMGV  367 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~  367 (489)
                        ..+..+..|+|.+++. .+.+++....+.+.    +..+|.+++|++.+|+.  .|....+..+...+.++.
T Consensus       406 --~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~~~l~l~~  477 (735)
T KOG3626|consen  406 --LAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVCSVLSLLF  477 (735)
T ss_pred             --HHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHHHHHHHHH
Confidence              3567777788888765 67777765555543    44578889999999986  344544444444444333

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.73  E-value=4.3e-17  Score=159.39  Aligned_cols=182  Identities=14%  Similarity=0.045  Sum_probs=138.4

Q ss_pred             ccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH---HhhhhhHHHHH
Q 011308           70 VNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM---SAITKNLWGML  145 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~  145 (489)
                      ....+|.+. +++|.+..+.  ++..+...++..++.++.|+++||+|||+++..+.++..++.+.   ...+++...++
T Consensus       269 ~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (490)
T PRK10642        269 LLTYMPSYLSHNLHYSEDHG--VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIF  346 (490)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            344566654 5678776655  67778888999999999999999999999988887654443322   22345677788


Q ss_pred             HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHh
Q 011308          146 LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFM  225 (489)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~  225 (489)
                      ++|++.|++.+........++.|.+|++.|+.++++......++..++|.+.+++.+..++|+.++++..++.++..+..
T Consensus       347 ~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~  426 (490)
T PRK10642        347 AGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITG  426 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHH
Confidence            89999998877777777888899999999999999744444555678888888877655447888777777777776667


Q ss_pred             hcccCChhHHHhc-----CChHHHHHHHHHHhC
Q 011308          226 EFCAESPHWLFKR-----GRGAEAEAELERLFG  253 (489)
Q Consensus       226 ~~~~e~~~~~~~~-----~~~~~~~~~~~~~~~  253 (489)
                      +++||+|+|+.++     +|.+|+++.+.++++
T Consensus       427 ~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~~  459 (490)
T PRK10642        427 VTMKETANRPLKGATPAASDIQEAKEILVEHYD  459 (490)
T ss_pred             HHhccccCCCCCCccccccchhhHHHHhhcccc
Confidence            7789999987755     788899988888764

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=99.71  E-value=1.1e-18  Score=168.80  Aligned_cols=382  Identities=16%  Similarity=0.177  Sum_probs=3.0

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      +.+++..+...+..+.....++.+.+.|+++.++.  |++.+.+-++..+..++..++.+|..|-|.+-.|.++++++++
T Consensus         6 ~~~~~~~~~q~~~~g~~~~~lttiErRF~l~S~~~--G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~   83 (539)
T PF03137_consen    6 VFLCLLGLFQMMVSGYVNSSLTTIERRFGLSSSQS--GLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSL   83 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHH
Confidence            34455556666777778888999999999999988  9999999999999999999999998888999999999999999


Q ss_pred             HHhhhh--------------------------------------------------hHHHHHHHHHHHhhcccchhhhHH
Q 011308          134 MSAITK--------------------------------------------------NLWGMLLGRLFVGTGMGIGPAVAA  163 (489)
Q Consensus       134 ~~~~~~--------------------------------------------------~~~~l~~~r~l~G~~~~~~~~~~~  163 (489)
                      ++++-+                                                  -+..++++.++.|+|....++...
T Consensus        84 l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~  163 (539)
T PF03137_consen   84 LFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGI  163 (539)
T ss_dssp             --------------------------------------------------------------------SSS---------
T ss_pred             HHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCcccee
Confidence            876400                                                  134577889999999999999999


Q ss_pred             HHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc---------------------chHHHHHHHhHHHHHHHH
Q 011308          164 LYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL---------------------GWWRICFWVATIPAAFLA  222 (489)
Q Consensus       164 ~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~---------------------~~Wr~~f~~~~~~~~~~~  222 (489)
                      +|+-|..++++-+..+|+..+...+|.++|.++++.+.+.+                     |.|-.-|++.++..++..
T Consensus       164 tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~a  243 (539)
T PF03137_consen  164 TYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSA  243 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998876432                     116666777777766666


Q ss_pred             HHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhh---hhhccchhhhhHHhhhccccccchhhhHHHHHh
Q 011308          223 LFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSK---SERGDEADAVKFSELISPRNFGVVFIGSTLFAL  299 (489)
Q Consensus       223 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (489)
                      +.++++|+.-+...  ++.++.+....+  .+........+.++   ..+..++-....+++++|+.+....++......
T Consensus       244 ipl~~FPk~lp~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~  319 (539)
T PF03137_consen  244 IPLFFFPKKLPGTS--ERQEEKESSERK--EEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESF  319 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHcCCccCCCcc--cccchhhhhhcc--hhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence            66666665422110  000000000000  00000000000000   011223344566778888877766665555444


Q ss_pred             hhhcchhHHHHhHHHHHHh-cCCCCCchhHHHH----HHHHHHHHHHHHHHhhhC--CchhHHHHHHHHHHHHHH---HH
Q 011308          300 QQLSGINAVFYFSSTVFKN-AGVPSDSGNICVG----IANLSGSIIAMILMDKLG--RRVLLLGSFLGMAIAMGV---QA  369 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~g~l~d~~~--~~~~~~~~~~~~~~~~~~---~~  369 (489)
                          ....+..|.|.+++. .+.++.....+.+    .+..+|.+++|++.+|++  .|..+....+...+..++   ..
T Consensus       320 ----~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~  395 (539)
T PF03137_consen  320 ----IVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLF  395 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ----HHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence                455556666666654 4555554333333    356688999999999985  344444444333333222   11


Q ss_pred             HH--hh--------cc------cC-------------------------CC--cchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308          370 IA--AT--------SF------VS-------------------------SS--GALSLSLGGMLLFVLTFSLGAGPVPSL  406 (489)
Q Consensus       370 ~~--~~--------~~------~~-------------------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (489)
                      +.  .+        .+      ..                         .+  ......++...+..+..+....|... 
T Consensus       396 ~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~-  474 (539)
T PF03137_consen  396 FLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTL-  474 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchhe-
Confidence            00  00        00      00                         00  01111222222222223333444444 


Q ss_pred             hhcccCChhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 011308          407 LLSEIFPNRIRAKAMAVCMAVHW-VINFFVGLLFLRLLEQL  446 (489)
Q Consensus       407 ~~~~~~p~~~~~~~~g~~~~~~~-~g~~~~~~~~g~l~~~~  446 (489)
                      ..-..+|+++|+.+.|+...+.. +|.+-+|.++|.+.|..
T Consensus       475 i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t  515 (539)
T PF03137_consen  475 ITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST  515 (539)
T ss_dssp             -----------------------------------------
T ss_pred             eeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence            45577899999999999998766 56788999999999864

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=99.69  E-value=4.4e-14  Score=127.39  Aligned_cols=345  Identities=17%  Similarity=0.131  Sum_probs=223.2

Q ss_pred             hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC-----chhHhh-hhhHHHHHHHHHHhhh-----h------
Q 011308           77 ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG-----RRRAFQ-LCALPMIIGASMSAIT-----K------  139 (489)
Q Consensus        77 i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G-----rr~~l~-~~~~~~~i~~~~~~~~-----~------  139 (489)
                      +..|++++..-.  +.+.+...+.. ...+.+|+.+|+.+     ||..++ .|.++...+..+..++     .      
T Consensus         6 MIvEL~vpA~lv--~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~   82 (403)
T PF03209_consen    6 MIVELGVPAWLV--ALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSS   82 (403)
T ss_pred             HHHHhccHHHHH--HHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccc
Confidence            556778765555  66666666554 46889999999999     776654 4566666555554432     2      


Q ss_pred             -hH--H--HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308          140 -NL--W--GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVA  214 (489)
Q Consensus       140 -~~--~--~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~  214 (489)
                       +.  +  ...+.-.+.|+|.+...+...+++.|..|+++|+++.++......+|.+++..+.+.+.+.++.-|..-.+.
T Consensus        83 ~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~  162 (403)
T PF03209_consen   83 GPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQ  162 (403)
T ss_pred             cccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHH
Confidence             11  2  233456788999999999999999999999999999999999999999999999998887765434433333


Q ss_pred             HHHHHH--HHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          215 TIPAAF--LALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       215 ~~~~~~--~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      ....+.  ..++..+-.|.+.     .+..                      ...++++......++++..+++.++.+.
T Consensus       163 ~~a~i~~~l~~ia~wg~E~r~-----~~~~----------------------~~~~~~~~~f~~a~~~~~~~~~a~~f~~  215 (403)
T PF03209_consen  163 GVALIALLLNLIALWGQEPRR-----SRRA----------------------AAAERPRPPFREAWRQVWASPQARRFFV  215 (403)
T ss_pred             HHHHHHHHHHHHHHHhcccCC-----cccc----------------------cCCCCCCccHHHHHHHHHhCCChhHHHH
Confidence            332222  2222222222211     0000                      0112233344556777888888776655


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHH------HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHh-hhCCchhHHHHHHHHH
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVF------KNAGVPSDS---GNICVGIANLSGSIIAMILMD-KLGRRVLLLGSFLGMA  362 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d-~~~~~~~~~~~~~~~~  362 (489)
                      ..++..+         .++.++..      +-.|++.+.   .+...+.+.++|....+++.. |.++++....++....
T Consensus       216 fl~l~t~---------a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~  286 (403)
T PF03209_consen  216 FLFLGTL---------AFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGA  286 (403)
T ss_pred             HHHHHHH---------HHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            5444433         23333322      225666555   666777888899888888876 5777788778888877


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      +++.++.+....     .+.+.......+++++.+........ .+-++.++++.|..+|.-...+.+...++..+.|.+
T Consensus       287 ~~f~lii~a~~~-----~~~~~~~~~~~l~G~g~G~f~vgals-~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~  360 (403)
T PF03209_consen  287 LAFALIILAGPL-----GSPWLFRPGVFLLGLGNGLFTVGALS-LMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGAL  360 (403)
T ss_pred             HHHHHHHHHHhc-----ccchHHHHHHHHHHHhhhHHHHHHHH-HHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777666555332     23444555566666665554433333 455677778899999999999999999999999998


Q ss_pred             HHHh----------ccchhhHHHHHHHHHHHHHh
Q 011308          443 LEQL----------GPLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       443 ~~~~----------g~~~~~~~~~~~~~~~~~~~  466 (489)
                      .|..          +|..+|.+=++..+++..+.
T Consensus       361 ~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll  394 (403)
T PF03209_consen  361 RDLVRALFGNSPALAYGVVFALEAVLLLAALVLL  394 (403)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            8742          24445555555555555444

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=1.5e-15  Score=122.19  Aligned_cols=136  Identities=22%  Similarity=0.366  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc
Q 011308           94 VSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY  173 (489)
Q Consensus        94 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  173 (489)
                      .+.+.++..+++++.|++.||+|||+.+..+..+..++.++....++++.+.+.+++.|++.+...+....++.|.+|++
T Consensus         4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   83 (141)
T TIGR00880         4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPE   83 (141)
T ss_pred             EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChh
Confidence            44567788899999999999999999999999999999999988899999999999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308          174 VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAE  230 (489)
Q Consensus       174 ~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e  230 (489)
                      +|++..++.+....+|..+++.+++.+.+..+ |++.|++.++..++..+...+ .||
T Consensus        84 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        84 ERGVALGLMSAGIALGPLLGPPLGGVLAQFLG-WRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             hhhHHHHHHHHhHHHHHHHhHHhHHHHhcccc-hHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            99999999999999999999999999998888 999999888777666555444 444

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=99.61  E-value=3.6e-14  Score=134.04  Aligned_cols=355  Identities=16%  Similarity=0.196  Sum_probs=220.8

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHH----HHHHHHHHHHHHHhhcccCchhHhhhhhHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTC----LGGAFVGSMFSGWIADGIGRRRAFQLCALP  127 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~----~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~  127 (489)
                      ......+-.+..++......+..+.....++.+....+ +......    .+...+.++..|.++||+|||..+....+.
T Consensus        23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~~~~-~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~  101 (463)
T KOG2816|consen   23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQLEN-GLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLLPLFG  101 (463)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCccchh-hhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHHHHHH
Confidence            34444555555566555555666666665554433332 4444444    577788999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhcc--cchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          128 MIIGASMSAITKNLWGMLLGRLFVGTGM--GIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~--~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ..+..+...+.. +|.++    +.|+..  +.......++++|....++|....++.+..+..+..++|.+++.+.+..+
T Consensus       102 ~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~  176 (463)
T KOG2816|consen  102 TILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLG  176 (463)
T ss_pred             HHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            888888777765 44433    444433  34566778899999999999999999999999999999999999998887


Q ss_pred             hHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhc-
Q 011308          206 WWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELIS-  283 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  283 (489)
                       .-..|.+..+..++..+. ..++||+..   ++.+.+. .  ..             +..............++...+ 
T Consensus       177 -~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~~-~--~~-------------~~~~~~~~~~~~~~~~~~~~~~  236 (463)
T KOG2816|consen  177 -IALVFLIAAASGILSLLYMLLFLPESLQ---EKERSDA-T--LR-------------ELTPGSLDSSHVADAFQSLTKV  236 (463)
T ss_pred             -chHHHHHHHHHHHHHHHHHhhccccccC---ccccccc-c--cc-------------ccCCCcccchhhhhhhhhhccc
Confidence             678888888777776665 445888743   1111100 0  00             000000000011111111112 


Q ss_pred             --cccccchhhhHHHHHhhhhcchh-HHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHH-HHHhhhCCchhHHH
Q 011308          284 --PRNFGVVFIGSTLFALQQLSGIN-AVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAM-ILMDKLGRRVLLLG  356 (489)
Q Consensus       284 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g-~l~d~~~~~~~~~~  356 (489)
                        +|....+.....+.......... ...+|+.   ...+++...   .....+....++.++.. .+...++.|+....
T Consensus       237 ~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~---~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~l  313 (463)
T KOG2816|consen  237 GPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLK---AKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISL  313 (463)
T ss_pred             CCCccchHHHHHHHHHHHHHhcCceeEEEEEEe---eecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhH
Confidence              12222111111111111111111 1111111   113444443   44455566667776665 67777898888888


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH
Q 011308          357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG  436 (489)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~  436 (489)
                      |.....+.....++....+        ..+....+  ..+.....|...+..+...+++.+|++.++...+..+...++|
T Consensus       314 Gl~~~~~~~~~~af~~~~w--------~~~~~~v~--~~~~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~  383 (463)
T KOG2816|consen  314 GLLSEFLQLLLFAFATETW--------MMFAAGVV--VALAGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSP  383 (463)
T ss_pred             HHHHHHHHHHHHHHhccch--------hhhHHHHH--HHhhcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhH
Confidence            9888888888888775543        12222222  2223344566677788888889999999999999999999999


Q ss_pred             HHHHHHHHH
Q 011308          437 LLFLRLLEQ  445 (489)
Q Consensus       437 ~~~g~l~~~  445 (489)
                      .+.+.+...
T Consensus       384 ~~~~~i~~~  392 (463)
T KOG2816|consen  384 ALYGNIFAL  392 (463)
T ss_pred             HHHHHHHHH
Confidence            999988654

>TIGR00889 2A0110 nucleoside transporter

Probab=99.58  E-value=6.3e-15  Score=140.81  Aligned_cols=160  Identities=12%  Similarity=0.117  Sum_probs=129.3

Q ss_pred             chhhhhhhcccccccc------hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh----hH
Q 011308           72 ETLESISLDLGFSGST------MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK----NL  141 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~------~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~  141 (489)
                      ...+.+.++.+.++..      ...+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....    ++
T Consensus       229 ~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~  308 (418)
T TIGR00889       229 IFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGY  308 (418)
T ss_pred             HhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence            4445556666644311      2238889999999999999999999999999999999999988876666532    34


Q ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhccccccc------chHHHHHHHh
Q 011308          142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEIL------GWWRICFWVA  214 (489)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~------~~Wr~~f~~~  214 (489)
                      +.+++.+++.|++.+...+....++.|++|+++|+++.++.+ ...++|..+||.++|.+.+..      + |+..|.+.
T Consensus       309 ~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~-~~~~f~~~  387 (418)
T TIGR00889       309 ALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFD-WQTMWLFF  387 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCc-hHHHHHHH
Confidence            667788999999999888888999999999999999999997 678899999999999998874      4 99999988


Q ss_pred             HHHHHHHHHHh-hcccCCh
Q 011308          215 TIPAAFLALFM-EFCAESP  232 (489)
Q Consensus       215 ~~~~~~~~~~~-~~~~e~~  232 (489)
                      ++..++..++. ++++|+.
T Consensus       388 ~~~~~i~~~l~~~~~~~~~  406 (418)
T TIGR00889       388 AGYIAILAVLFMIFFKYSH  406 (418)
T ss_pred             HHHHHHHHHHHHHHhCCcc
Confidence            88777766554 4467653

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.56  E-value=7.1e-14  Score=133.03  Aligned_cols=155  Identities=16%  Similarity=0.207  Sum_probs=126.5

Q ss_pred             chhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308           72 ETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF  150 (489)
Q Consensus        72 ~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (489)
                      ...|. +.+++|.+..+.  |++.+...++..++.++.|+++||+|||+.+..+.+...+........++.+.+++.+++
T Consensus       237 ~~~p~~l~~~~~~~~~~~--g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  314 (393)
T PRK15011        237 INMPLFIINELHLPEKLA--GVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLL  314 (393)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            34554 456788877666  888888777888899999999999999998887776666655555567788888889999


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccC
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAE  230 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e  230 (489)
                      .+++.+...+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+..+ |+..|++.+++.++..+..++.||
T Consensus       315 ~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  392 (393)
T PRK15011        315 NAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWN-YHAVFWFALVMIIATLFCLLRIKD  392 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHhhcC
Confidence            8888777777777888999875 58999999999999999999999999999888 999999888888777776666654

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.56  E-value=4.8e-14  Score=141.02  Aligned_cols=139  Identities=13%  Similarity=0.003  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCC
Q 011308           92 LVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSP  171 (489)
Q Consensus        92 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~  171 (489)
                      +...+..++..++.++.|+++||+|||++++++.++++++.++.++.++...+++.+++.|++.++.++...++++|++|
T Consensus       599 ~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~P  678 (742)
T TIGR01299       599 FVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYP  678 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            44556678889999999999999999999999999999999999999888888888999999888889999999999999


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308          172 AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP  232 (489)
Q Consensus       172 ~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~  232 (489)
                      .++|++++|+.++...+|.+++|.+++.+.+..  ...+|++.++..++..++..++||+.
T Consensus       679 t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~--~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       679 SDKRATAFGFLNALCKAAAVLGILIFGSFVGIT--KAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999999999999999999877643  46788888877777777777788864

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.56  E-value=1.3e-14  Score=139.60  Aligned_cols=148  Identities=12%  Similarity=0.041  Sum_probs=125.2

Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhh
Q 011308           82 GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAV  161 (489)
Q Consensus        82 ~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~  161 (489)
                      +.+..+.  |++.++..++..++.+++|++.||+|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+.
T Consensus       258 ~~~~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~  335 (420)
T PRK09528        258 EQGTRVF--GYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVG  335 (420)
T ss_pred             CcchHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence            4443444  89999999999999999999999999999999999999999899999999999999999999998888788


Q ss_pred             HHHHHHhcCCccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhh-cccCCh
Q 011308          162 AALYVSEVSPAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME-FCAESP  232 (489)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~  232 (489)
                      ...++.|.+|++.|+...+. ++....+|.++++.+.|++.+..| ||..|.+.++..++..+..+ .+++++
T Consensus       336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G-~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIG-FQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            88999999999988877655 677788999999999999999888 99999988877766554433 344443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=99.55  E-value=6.4e-14  Score=133.47  Aligned_cols=356  Identities=15%  Similarity=0.107  Sum_probs=198.9

Q ss_pred             cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-----CchhHhhhhhHHHHHHHHHHhhh----hhH
Q 011308           71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-----GRRRAFQLCALPMIIGASMSAIT----KNL  141 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-----Grr~~l~~~~~~~~i~~~~~~~~----~~~  141 (489)
                      .+..|.+.+++|+++++.  ....+...+...+ .++.|.++|-+     -||+-++++.++..++.+..+..    .+.
T Consensus        10 ~~~~~~l~~~l~ls~~~~--~~~~~~~~lPw~~-Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~   86 (433)
T PF03092_consen   10 LAIYPFLKDDLGLSPAQL--QRLSSLASLPWSI-KPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA   86 (433)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHhCchHH-hhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence            345678889999998887  5666666666554 67789999976     35666667777765555555442    356


Q ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHhcCC--ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHH
Q 011308          142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSP--AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAA  219 (489)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~--~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~  219 (489)
                      ....++-++..+|.+....++-+++.|...  +++|+...+.......+|.+++..++|.+.+..+ +|..|.+.+++..
T Consensus        87 ~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~-~~~~f~i~~~~~~  165 (433)
T PF03092_consen   87 AIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFG-PQGVFLISAALPL  165 (433)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCC-CeEEehHHHHHHH
Confidence            667777788889999999999999999874  3347788888888899999999999999999888 8999988877766


Q ss_pred             HHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh-hHHHHH
Q 011308          220 FLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI-GSTLFA  298 (489)
Q Consensus       220 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  298 (489)
                      +..+..+++.|+.+    +.+.++... ..+           ++........++.....++.++.+..+...+ ..++..
T Consensus       166 l~~~~~~~~~~e~~----~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~  229 (433)
T PF03092_consen  166 LMLIVALFLLEERK----VRPADEVFS-FGK-----------EEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFN  229 (433)
T ss_pred             HHHHHHHHhhhhcc----ccccchhhc-ccc-----------cccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            66555444433211    000000000 000           0000000001223344555666665554433 222211


Q ss_pred             hhhhcchhHHHHhHHHHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcc
Q 011308          299 LQQLSGINAVFYFSSTVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSF  375 (489)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  375 (489)
                      ...........++.....+..+++........   .++.++|..+......+..-|+++....+...+..+.-......+
T Consensus       230 ~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~  309 (433)
T PF03092_consen  230 LPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRW  309 (433)
T ss_pred             hccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEE
Confidence            11111101011111111111113333222222   233334444443333333444554444443332222111111110


Q ss_pred             c--CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          376 V--SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       376 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      .  ......+..+.--.+......+...|... +.+|+.|+...|+.+++..++.++|..++..+...+.+..+
T Consensus       310 n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lv-l~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  310 NLDLGIPDQWFALGDTILEEVIGMIAFMPSLV-LAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             eeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHH-HHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            0  00011122222333333333334445544 68899999999999999999999999999999998887766

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.55  E-value=9.9e-14  Score=132.64  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=130.5

Q ss_pred             cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308           71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF  150 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (489)
                      ...+|.+.++.|.  ++.  ++..+.+.++..++.++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+++.+++
T Consensus       236 ~~~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (399)
T PRK05122        236 ATFITLYYAARGW--DGA--ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAAL  311 (399)
T ss_pred             HHHHHHHHHHccc--ccc--hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            3344555555555  233  567788889999999999999999999999999998888888888888888888889999


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccC
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAE  230 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e  230 (489)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..+++.+.+.+.+..+ |++.|++.++..++..+..+++++
T Consensus       312 ~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        312 TGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFG-YPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999998888888888899999999999999999999999999999999998888 999999988877776666555444

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.54  E-value=3.1e-14  Score=135.08  Aligned_cols=147  Identities=18%  Similarity=0.076  Sum_probs=125.3

Q ss_pred             chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhH--HHHHHHHH
Q 011308           72 ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNL--WGMLLGRL  149 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~  149 (489)
                      ...+.+.++++.+.++.  +++.+.+.++..++.++.|++.||+|||+.+..+.++..++.++..+.++.  ..+++..+
T Consensus       226 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (377)
T TIGR00890       226 GLYKPYGQSLGLSDGFL--VLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVA  303 (377)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence            34555667888776555  899999999999999999999999999999999999988888877776643  33445678


Q ss_pred             HHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHH
Q 011308          150 FVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFL  221 (489)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~  221 (489)
                      +.|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..| |++.|++.++..++.
T Consensus       304 ~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       304 LVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIG-FEYTFIVTGAFALTS  374 (377)
T ss_pred             HHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHh
Confidence            88888888888888899999999999999999999999999999999999999888 999999887766654

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.52  E-value=7.3e-14  Score=133.92  Aligned_cols=156  Identities=21%  Similarity=0.132  Sum_probs=130.7

Q ss_pred             cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308           71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF  150 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (489)
                      ....|.+.++.|.+..+.  +++.+.+.++..++.++.|+++||+|||+.+..+.+...++.++..+.++.+.+.+..++
T Consensus       240 ~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (406)
T PRK11551        240 LNWLPSLLVGQGLSRSQA--GLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFA  317 (406)
T ss_pred             HHHHHHHHHhCCCChhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            334677778888887777  899999999999999999999999999999988877777777777777788888888888


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcc
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFC  228 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      .|++.+...+...+++.|.+|+++|++..++.+....+|..++|.+++.+.+..++|...++......++..+..+++
T Consensus       318 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        318 AGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888888999999999999999999999999999999999999998876547777777666655555544443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.51  E-value=1.6e-13  Score=128.94  Aligned_cols=164  Identities=23%  Similarity=0.329  Sum_probs=143.8

Q ss_pred             hhhccccccccchhhhhhhcc-cccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchh-HhhhhhHHHHHHHHHHhhh
Q 011308           61 FLFGYHLGVVNETLESISLDL-GFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR-AFQLCALPMIIGASMSAIT  138 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~  138 (489)
                      +.............|.+.++. |.+..+.  ++..+...++..++.++.|++.||+|||+ .+..+..+..++.+.....
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  262 (352)
T cd06174         185 FLLSFGYYGLLTYLPLYLQEVLGLSAAEA--GLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA  262 (352)
T ss_pred             HHHHhHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            334444445555667666664 7666666  99999999999999999999999999999 9999999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHH
Q 011308          139 KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPA  218 (489)
Q Consensus       139 ~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~  218 (489)
                      ++.+.+.+..++.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+.+.+.+..+ |++.|++.++..
T Consensus       263 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~-~~~~~~~~~~~~  341 (352)
T cd06174         263 PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG-YGGVFLILAALA  341 (352)
T ss_pred             ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-cchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998888 999999999888


Q ss_pred             HHHHHHhhc
Q 011308          219 AFLALFMEF  227 (489)
Q Consensus       219 ~~~~~~~~~  227 (489)
                      ++..+..++
T Consensus       342 ~i~~i~~~~  350 (352)
T cd06174         342 LLAALLLLL  350 (352)
T ss_pred             HHHHHHhee
Confidence            877665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=2.5e-13  Score=129.51  Aligned_cols=151  Identities=16%  Similarity=0.204  Sum_probs=128.9

Q ss_pred             cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308           71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF  150 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (489)
                      ....|.+.++.+.+  +.  ++..+.+.++..+++++.|++.||+|+|+.+..+..+.+++.++..+.++.+.+.+++++
T Consensus       236 ~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  311 (392)
T PRK12382        236 GTFVSLYFASKGWA--MA--GFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAAL  311 (392)
T ss_pred             HHHHHHHHHhcCCc--hh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            33445555565654  23  566777888889999999999999999999999999999988888888888888889999


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhh
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME  226 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~  226 (489)
                      .|++.+...+.....+.|.+|+++|+++.++++....+|..++|.+.+.+.+..| |++.|.+.++..++..+..+
T Consensus       312 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~  386 (392)
T PRK12382        312 TGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFG-YPSVFLAGAISAVLGIIVTI  386 (392)
T ss_pred             HHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHH
Confidence            9999988888888889999999999999999999999999999999999999988 99999998887776655543

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.50  E-value=4e-13  Score=127.39  Aligned_cols=156  Identities=13%  Similarity=0.010  Sum_probs=134.1

Q ss_pred             ccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHH
Q 011308           64 GYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWG  143 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~  143 (489)
                      ......+....|.+.+|+|.+.++.  |++.+...++..++.++.+++.||+|+|+.+.++.+...+..++.+++++.+.
T Consensus       218 ~~~~~~~~~~~~~~l~~~g~s~~~~--g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~  295 (382)
T TIGR00902       218 QGAHAAYYGFSAIYWQAAGISASAT--GLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEAFPL  295 (382)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence            3334444556676777888887777  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHH
Q 011308          144 MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLA  222 (489)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~  222 (489)
                      +++.+++.|++.+...+....++.+. |+++|++..++++ ...++|.++++.++|.+.+..+ + ..|++.++..++..
T Consensus       296 ~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g-~-~~~~~~~~~~~~~~  372 (382)
T TIGR00902       296 IFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLG-A-GTFVFMAIIAAAAF  372 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHH
Confidence            99999999999999999999999998 9999999999986 4678999999999999999988 5 55666666666554


Q ss_pred             HH
Q 011308          223 LF  224 (489)
Q Consensus       223 ~~  224 (489)
                      ++
T Consensus       373 ~~  374 (382)
T TIGR00902       373 FL  374 (382)
T ss_pred             HH
Confidence            43

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.49  E-value=3.9e-13  Score=127.52  Aligned_cols=150  Identities=22%  Similarity=0.347  Sum_probs=125.5

Q ss_pred             hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhccc
Q 011308           77 ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMG  156 (489)
Q Consensus        77 i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~  156 (489)
                      +.+++|.++.+.  |++.+.......++.++.|++.||+|||+++..+.++..+..++..+.++.+.+.+.+++.|++.+
T Consensus       226 ~~~~~g~~~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g  303 (375)
T TIGR00899       226 IIHELGLPDKLA--GLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFIG  303 (375)
T ss_pred             HHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778877666  888877777778888999999999999999988877776666666667788888889999999988


Q ss_pred             chhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccC
Q 011308          157 IGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAE  230 (489)
Q Consensus       157 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e  230 (489)
                      ...+....++.|..|+ +++++.++++....+|..++|.+++.+.+..+ |+..|++.++..++..+...+++|
T Consensus       304 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       304 ILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWS-YHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHheecC
Confidence            8888888899998875 56799999999999999999999999999888 999999988887777666655543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.48  E-value=4e-13  Score=130.05  Aligned_cols=161  Identities=12%  Similarity=0.051  Sum_probs=128.5

Q ss_pred             hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc--CchhHhhh--hhHHHHHHHHHHh
Q 011308           61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI--GRRRAFQL--CALPMIIGASMSA  136 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~--~~~~~~i~~~~~~  136 (489)
                      ++...........+|.+.+++|.+..+.  +++.+...++..+++++.|+++||.  ++|+...+  +.++.+++.++..
T Consensus       251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~  328 (455)
T TIGR00892       251 VIMFLGFFAPIIFLVPYAKDKGVDEYEA--AFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA  328 (455)
T ss_pred             HHHHHHccchHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344456677778888877666  9999999999999999999999984  34443333  3444455556667


Q ss_pred             hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHH
Q 011308          137 ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATI  216 (489)
Q Consensus       137 ~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~  216 (489)
                      ..++++.+++.+++.|++.+...+...+++.|.+|++++++.+++++....+|..+||.+++.+.+..++|++.|++.++
T Consensus       329 ~~~~~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~  408 (455)
T TIGR00892       329 LAGDYTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGS  408 (455)
T ss_pred             HhchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhH
Confidence            78889999999999999999999999999999999999999999999999999999999999999877449999999887


Q ss_pred             HHHHHHH
Q 011308          217 PAAFLAL  223 (489)
Q Consensus       217 ~~~~~~~  223 (489)
                      ..++..+
T Consensus       409 ~~li~~~  415 (455)
T TIGR00892       409 IVVSAGL  415 (455)
T ss_pred             HHHHHHH
Confidence            7665544

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.46  E-value=2.7e-13  Score=130.18  Aligned_cols=157  Identities=16%  Similarity=0.128  Sum_probs=130.1

Q ss_pred             ccchhhhhhhcccccccc--hHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 011308           70 VNETLESISLDLGFSGST--MAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLG  147 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~--~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~  147 (489)
                      ..+.++.+.++.+.+.++  ...+.+.+++.++..++.++.|+++||+|||+.+..+..+..++.+...+.++.+.+.+.
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (408)
T PRK09874        238 IAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQTPLQLGIL  317 (408)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            444555555554332222  123666777788888999999999999999999999988888888877878888888899


Q ss_pred             HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308          148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF  227 (489)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~  227 (489)
                      +++.|++.+...+....++.+..|+++|++.+++++....+|..+||.+++.+.+..+ |++.|++.++..++..+..++
T Consensus       318 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~  396 (408)
T PRK09874        318 RFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYG-FRAVFLVTAGVVLFNAVYSWN  396 (408)
T ss_pred             HHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcc-hhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999888 999999988887776665433

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=99.45  E-value=5.6e-12  Score=112.08  Aligned_cols=244  Identities=16%  Similarity=0.095  Sum_probs=151.5

Q ss_pred             cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308           69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGR  148 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (489)
                      ..+|..-.+-+++|.++.++  +.+....+...++..++.|.++||+|||+.-+..+++.+++++. -.+++++.++++|
T Consensus        52 LQGpY~Y~LY~~yg~~~~qI--a~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~-k~~~~~~~L~~GR  128 (354)
T PF05631_consen   52 LQGPYLYALYESYGFSEHQI--AILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLT-KHSSNYPVLLLGR  128 (354)
T ss_pred             hhcchhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHH-HhccccHHHHHHH
Confidence            34555445557899988888  89999999999999999999999999999999999999998864 4568899999999


Q ss_pred             HHHhhcccchhhhHHHHH-HhcCC----ccchhhHHHHHH-HHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHH
Q 011308          149 LFVGTGMGIGPAVAALYV-SEVSP----AYVRGAYGSSTQ-IAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFL  221 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i-~~~~~----~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~  221 (489)
                      ++.|++.+..+.+-.++. .|.-.    ++..+.-++... ..+++-.+++.+++-++.+..+. -..+|....+...+.
T Consensus       129 vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~  208 (354)
T PF05631_consen  129 VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVA  208 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence            999999999988887764 55422    222222222222 22233344455555555554431 267788777766666


Q ss_pred             HHHhhc-ccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhh
Q 011308          222 ALFMEF-CAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQ  300 (489)
Q Consensus       222 ~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (489)
                      .++... .+|....   ..+.                          .+..+.....++.+.++++.+.+-..   ..+.
T Consensus       209 ~~~I~~~W~ENyg~---~~~~--------------------------~~~~~~~~~a~~~i~~d~ril~LG~~---qslF  256 (354)
T PF05631_consen  209 AVLILKTWPENYGD---TSSS--------------------------SSLSGSFREAWRAILSDPRILLLGLI---QSLF  256 (354)
T ss_pred             HHHHHhcccccCCC---cccc--------------------------cchHHHHHHHHHHHHcCchhHHHHHH---HHHH
Confidence            555433 4554320   0000                          00011122344556666665544333   3333


Q ss_pred             hhcchhHHHHhHHHHHHh-cCCCCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308          301 QLSGINAVFYFSSTVFKN-AGVPSDSGNICVGIANLSGSIIAMILMDK  347 (489)
Q Consensus       301 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~l~d~  347 (489)
                      ....+.....|.|.+-.+ .+.+.+.+...+.++.++|+.+..++..+
T Consensus       257 E~smy~FVflWtPaL~~~~~~~P~GlIFssFM~a~MlGS~lf~~l~s~  304 (354)
T PF05631_consen  257 EGSMYLFVFLWTPALDPDDEELPLGLIFSSFMVAMMLGSSLFSRLLSK  304 (354)
T ss_pred             HHHHHHheeeeeceecCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            333444445555554422 23445557777778888888887665543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.43  E-value=1.4e-12  Score=123.69  Aligned_cols=149  Identities=14%  Similarity=0.112  Sum_probs=122.6

Q ss_pred             chhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 011308           72 ETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFV  151 (489)
Q Consensus        72 ~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~  151 (489)
                      ..+|.+.++.|.+.++.  |++.+.+.++..+++++.|++.||+|+|+++..+..+..++.+...  . .......+++.
T Consensus       221 ~~lp~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~  295 (381)
T PRK03633        221 GLMPLYLNHQGMSDASI--GFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFIL  295 (381)
T ss_pred             HHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHH
Confidence            34677777778777666  8889999999999999999999999999999988888777665543  2 23344577888


Q ss_pred             hhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhh
Q 011308          152 GTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME  226 (489)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~  226 (489)
                      |++.....|.....+.|..|+++++...+.++...++|..+||.++|++.++.+ |++.|.+.+...++..+..+
T Consensus       296 g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~  369 (381)
T PRK03633        296 GAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYS-DNLLFIMIASVSFIYLLMLL  369 (381)
T ss_pred             HHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHH
Confidence            887777889999999999998888888888888899999999999999999988 89999998877766655443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.43  E-value=1.5e-12  Score=124.49  Aligned_cols=168  Identities=19%  Similarity=0.153  Sum_probs=118.4

Q ss_pred             HHHHHhhhhccccccccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchh--Hhh------hhh
Q 011308           55 VAIISSFLFGYHLGVVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR--AFQ------LCA  125 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~--~l~------~~~  125 (489)
                      ...+..++............|.+. +++|.+..+.  +++.+...++..++.++.|+++||+|||+  ...      .+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (399)
T TIGR00893       219 GLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA--GFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG  296 (399)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            334444444444445555666554 5577776666  89999999999999999999999999996  111      111


Q ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          126 LPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       126 ~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ++..+........++.+.......+.+.+.+ ..+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g  375 (399)
T TIGR00893       297 LVLSLLMFATNYVNIPYAALALVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTG  375 (399)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCC
Confidence            1112222222223344444444455555544 788899999999999999999999999999999999999999998776


Q ss_pred             hHHHHHHHhHHHHHHHHHHh
Q 011308          206 WWRICFWVATIPAAFLALFM  225 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~  225 (489)
                      .|+..|++.++..++..+..
T Consensus       376 ~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       376 SFAGALMVVAALALIGALSY  395 (399)
T ss_pred             chhHHHHHHHHHHHHHHHHH
Confidence            58999988877766655443

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=99.42  E-value=4.5e-11  Score=109.47  Aligned_cols=370  Identities=11%  Similarity=0.065  Sum_probs=219.7

Q ss_pred             hHHHHHHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           51 PHVLVAIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      +....+|+-.|+..+-- .-+...|.+.+. .|++.++.+ .-+.-...-.+....++...+.|..|.|++++++.+...
T Consensus         5 ~~~~llc~~gf~~~frP-sEPfl~~yL~~~~kn~T~~qv~-~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i   82 (412)
T PF01770_consen    5 KITLLLCLFGFFKEFRP-SEPFLTPYLTGPDKNFTEEQVN-NEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYI   82 (412)
T ss_pred             HHHHHHHHHHHHHhcCC-CCccchHHHcCCccCCCHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34445555555543322 223334555554 788887775 456667777788888999999999999999999999999


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc-hHH
Q 011308          130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG-WWR  208 (489)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~-~Wr  208 (489)
                      +..++..+.++...+-+..++-|++.+. ..+-.+++-...|+++-.++.+...++.-+|..++.++|-.+....+ ..+
T Consensus        83 ~t~~lll~~~sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~  161 (412)
T PF01770_consen   83 ITWLLLLFGTSVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYF  161 (412)
T ss_pred             HHHHHHHHHCcHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence            9999999999999999999999998665 56778899888999999999999999999999999999887776332 156


Q ss_pred             HHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHH--hCCCCchHHH-HHHhhhhhccchh-------hhhH
Q 011308          209 ICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERL--FGGLHVKYSM-AELSKSERGDEAD-------AVKF  278 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~-------~~~~  278 (489)
                      ...++......+..+..+++|..++-..-+++..+... ..+.  ....+..+.. +..++.+..+...       ...+
T Consensus       162 ~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  240 (412)
T PF01770_consen  162 QLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDF  240 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHHHHH
Confidence            66666655555555566677776542222221111000 0000  0000000000 0000000111111       1233


Q ss_pred             HhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC---c---hhHHHHHHHHHHHHHHHHHHhhhCCch
Q 011308          279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD---S---GNICVGIANLSGSIIAMILMDKLGRRV  352 (489)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~g~l~d~~~~~~  352 (489)
                      ++..+++...    ...+++....+++.....|.+.+.++..-+..   .   +-....+.+.++.+..|++..+..+..
T Consensus       241 ~~~y~~~~ll----~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~  316 (412)
T PF01770_consen  241 KSCYSNPRLL----LWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWG  316 (412)
T ss_pred             HHHhcCchHH----HHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHH
Confidence            3444444433    33344444455677777788877777611111   1   344445566667777788754455443


Q ss_pred             hHHHHHHHHH--HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH
Q 011308          353 LLLGSFLGMA--IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV  430 (489)
Q Consensus       353 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~  430 (489)
                      .+..+.....  ..++++..        ..+.+......+++...+.+... +...-++.....+.-|..+|+.+++..+
T Consensus       317 ~l~l~~~S~l~a~~L~lm~~--------t~~Iwv~Y~~yIif~~~y~fliT-iA~~qIA~~l~~e~yaLVFGiNtf~Al~  387 (412)
T PF01770_consen  317 ELALGVFSLLQAGLLFLMSF--------TGNIWVCYAGYIIFRSLYMFLIT-IASFQIAKNLSEERYALVFGINTFVALV  387 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhccccceeeeeeeHHHHHHH
Confidence            3333333222  22222222        24456667777777777665433 2233344444556678888877777665


Q ss_pred             HHHHHHH
Q 011308          431 INFFVGL  437 (489)
Q Consensus       431 g~~~~~~  437 (489)
                      -..+...
T Consensus       388 LQtilT~  394 (412)
T PF01770_consen  388 LQTILTL  394 (412)
T ss_pred             HHHheEE
Confidence            5544443

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.42  E-value=2.2e-12  Score=125.63  Aligned_cols=170  Identities=18%  Similarity=0.127  Sum_probs=122.6

Q ss_pred             HHHHHHhhhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      ..+++..++...........+|.+ .+++|.+..+.  ++..+...++..++.+++|+++||+|||+.+.....+..++.
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a--~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~  338 (467)
T PRK09556        261 WLLCFANIFLYIVRIGIDNWSPVYAFQELGFSKEDA--INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIF  338 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            334444444443333345556754 56789887776  888999999999999999999999999988766554444333


Q ss_pred             HH--HhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhccccc-------
Q 011308          133 SM--SAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKE-------  202 (489)
Q Consensus       133 ~~--~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~-------  202 (489)
                      .+  ....++...+.+.+++.|++.............|.+|+++|+.+.|+.+....+ |..++|.+.|.+.+       
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~  418 (467)
T PRK09556        339 TLGVYQHATSEYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTP  418 (467)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccc
Confidence            22  223456666778888888654333333346677999999999999999988886 77899999999988       


Q ss_pred             -----ccchHHHHHHHhHHHHHHHHHHhh
Q 011308          203 -----ILGWWRICFWVATIPAAFLALFME  226 (489)
Q Consensus       203 -----~~~~Wr~~f~~~~~~~~~~~~~~~  226 (489)
                           ..+ |+..|++.++..++..+..+
T Consensus       419 ~~~~~~~~-~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        419 IFGYTLTG-WAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             cccccccC-hHHHHHHHHHHHHHHHHHHH
Confidence                 566 99999988777666655443

>PRK03699 putative transporter; Provisional

Probab=99.41  E-value=2.4e-12  Score=122.70  Aligned_cols=157  Identities=13%  Similarity=0.047  Sum_probs=128.6

Q ss_pred             cccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 011308           69 VVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLG  147 (489)
Q Consensus        69 ~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~  147 (489)
                      .+....|.+. +++|.+..+.  +++.+.+.++..++.++.|+++||+|||+++.....+..+...+....++.+.+.+.
T Consensus       223 ~~~~~~p~~l~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (394)
T PRK03699        223 TFISWVPEYAQKKFGMSLEDA--GNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTDDPSHLLYA  300 (394)
T ss_pred             HHHHHHHHHHHHHcCCChHHh--hHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcCCchHHHHH
Confidence            3445566665 5678887777  899999999999999999999999999999988888777777777677787777778


Q ss_pred             HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308          148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF  227 (489)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~  227 (489)
                      .++.|++.+...+....+..|..| +++++..+.......+|..++|.+.+.+.+..| |+..+++.++..++..+....
T Consensus       301 ~~~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (394)
T PRK03699        301 ILGLGFFSSAIYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFG-LQAALLTANGLYAVVFVMCIL  378 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhC-chhhhhhhHHHHHHHHHHHHH
Confidence            889999888888888888888775 446777888888889999999999999999888 899999888877776655544


Q ss_pred             cc
Q 011308          228 CA  229 (489)
Q Consensus       228 ~~  229 (489)
                      ++
T Consensus       379 ~~  380 (394)
T PRK03699        379 LG  380 (394)
T ss_pred             HH
Confidence            43

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.41  E-value=1.2e-12  Score=129.11  Aligned_cols=148  Identities=20%  Similarity=0.139  Sum_probs=115.3

Q ss_pred             ccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh--hhHHHHHH
Q 011308           70 VNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT--KNLWGMLL  146 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~  146 (489)
                      ....+|.+. +++|.+..+.  +++.+.+.++..++.++.|+++||+|||+++..+.++..+..++....  .+.+.+.+
T Consensus       294 ~~~~lp~~l~~~~g~~~~~~--g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (496)
T PRK03893        294 IQALLPTYLKTDLGYDPHTV--ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGANVWVLGL  371 (496)
T ss_pred             HHHHHHHHHHhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            345567776 5888887777  999999999999999999999999999999988877766665544332  34444445


Q ss_pred             HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308          147 GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF  220 (489)
Q Consensus       147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~  220 (489)
                      ..++.+.......+....++.|.+|+++|++.+++.+....+|..+||.+++.+.+..+ |+..+...+....+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g-~~~~~~~~~~~~~~  444 (496)
T PRK03893        372 LLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLD-LGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCC-hHHHHHHHHHHHHH
Confidence            55555444334456677889999999999999999999999999999999999999988 88887665544333

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.41  E-value=6.3e-12  Score=119.56  Aligned_cols=160  Identities=15%  Similarity=0.126  Sum_probs=123.7

Q ss_pred             cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh-hHHHHHHH
Q 011308           69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK-NLWGMLLG  147 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~  147 (489)
                      .....+|.+.+++|.+..+.  |...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+ +...+  .
T Consensus       223 ~~~~~lp~~l~~~g~s~~~a--g~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~  298 (393)
T PRK09705        223 SLIAWLPAFYIEIGASAQYS--GSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--W  298 (393)
T ss_pred             HHHHHHHHHHHHcCCChhhh--hHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH--H
Confidence            34445666667788887777  8999999999999999999999999999999988888777766554322 22222  2


Q ss_pred             HHHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH-h
Q 011308          148 RLFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF-M  225 (489)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~-~  225 (489)
                      -++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..|+|+..|++.++..++..+. .
T Consensus       299 ~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (393)
T PRK09705        299 AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITL  378 (393)
T ss_pred             HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHH
Confidence            345688888888877777777775 57899999999999999999999999999998876888888877766665554 3


Q ss_pred             hcccCCh
Q 011308          226 EFCAESP  232 (489)
Q Consensus       226 ~~~~e~~  232 (489)
                      .+.||++
T Consensus       379 ~~~~~~~  385 (393)
T PRK09705        379 RFAPARF  385 (393)
T ss_pred             Hhccccc
Confidence            4456654

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.40  E-value=7.2e-13  Score=126.55  Aligned_cols=156  Identities=19%  Similarity=0.143  Sum_probs=118.1

Q ss_pred             hhhccccccccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH--HHHhh
Q 011308           61 FLFGYHLGVVNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA--SMSAI  137 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~--~~~~~  137 (489)
                      +.............|.+. +++|.+.++.  +++.+...++..++.++.|+++||+|||+.+..+..+..+..  +...+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~  306 (394)
T TIGR00883       229 IATTTTFYLITTYLPTYLTQTLGLSANSA--LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL  306 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333334445566665 6778877666  888999999999999999999999999998876555444333  22222


Q ss_pred             --hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHh
Q 011308          138 --TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVA  214 (489)
Q Consensus       138 --~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~  214 (489)
                        .++.+.+.+..++.|++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+++.+.+..+.|++.++..
T Consensus       307 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~  386 (394)
T TIGR00883       307 LDSGSFTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYL  386 (394)
T ss_pred             hcCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence              24667777788899998888889999999999999999999987 456677899999999999998877577777665


Q ss_pred             HHHH
Q 011308          215 TIPA  218 (489)
Q Consensus       215 ~~~~  218 (489)
                      .+..
T Consensus       387 ~~~~  390 (394)
T TIGR00883       387 AALA  390 (394)
T ss_pred             HHHH
Confidence            5443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.40  E-value=1.2e-11  Score=112.74  Aligned_cols=172  Identities=16%  Similarity=0.128  Sum_probs=141.4

Q ss_pred             hhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHH
Q 011308          291 FIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGV  367 (489)
Q Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~  367 (489)
                      ++...+..+..........-.+|.+-++.+.+...   ..+.++.+..++.++...+.||+.||++++....++.++.++
T Consensus        15 l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l   94 (394)
T COG2814          15 LLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLL   94 (394)
T ss_pred             HHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHH
Confidence            33444444444445566667788999999988766   667778899999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      ..+.+++        ...++.-++.+...+.. .++..+...+++|+++|++++++......+...+|.+++.++-|.+|
T Consensus        95 ~alAp~f--------~~Ll~aR~~~g~a~G~f-~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~G  165 (394)
T COG2814          95 SALAPSF--------AVLLLARALAGLAHGVF-WSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFG  165 (394)
T ss_pred             HHHhccH--------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence            8887654        33455555555555433 34667789999999999999999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHhhhccc
Q 011308          448 PLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      |+..|...++++++..+..+...|
T Consensus       166 WR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         166 WRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC
Confidence            999999999999999998888888

>PRK10054 putative transporter; Provisional

Probab=99.39  E-value=5.6e-12  Score=119.89  Aligned_cols=158  Identities=11%  Similarity=0.041  Sum_probs=111.0

Q ss_pred             hhHHHHhHHHHH-HhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          305 INAVFYFSSTVF-KNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       305 ~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      ......+++.++ ++.|.+...   ......+..+++.+..|+++||+|||+.+..+.+...++.+.+.+..+.      
T Consensus        23 ~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~------   96 (395)
T PRK10054         23 RGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNV------   96 (395)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHH------
Confidence            333344444444 456777666   3344456778889999999999999999988888777777666554332      


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF  460 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  460 (489)
                        +..+....+.+...+ ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+++++
T Consensus        97 --~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~  172 (395)
T PRK10054         97 --TLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSA  172 (395)
T ss_pred             --HHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHH
Confidence              222222333333322 2345566678899999999999999999999999999999998875 689999998887777


Q ss_pred             HHHHHhhhcccC
Q 011308          461 LAVIYVKRNVME  472 (489)
Q Consensus       461 ~~~~~~~~~~~~  472 (489)
                      +..++..+..++
T Consensus       173 i~~i~~~~~~~~  184 (395)
T PRK10054        173 FPLVFIQIWVQR  184 (395)
T ss_pred             HHHHHHHHHHhc
Confidence            765555444443

>TIGR00897 2A0118 polyol permease family

Probab=99.39  E-value=3.6e-12  Score=121.77  Aligned_cols=157  Identities=17%  Similarity=0.084  Sum_probs=120.4

Q ss_pred             cccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhh-hhhHHHHHHHHHHhh-----hhh
Q 011308           67 LGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ-LCALPMIIGASMSAI-----TKN  140 (489)
Q Consensus        67 ~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-~~~~~~~i~~~~~~~-----~~~  140 (489)
                      ........|.+.+++|.+..+.  +++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+....     .++
T Consensus       238 ~~~~~~~~p~~~~~~g~s~~~~--~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~  315 (402)
T TIGR00897       238 LFGFAVFLPMFVAELGFSTSEW--LQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHS  315 (402)
T ss_pred             HHHHHHHHHHHHHHcCCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            3334556777888888887776  88889999999999999999999999988764 333333333333222     245


Q ss_pred             HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308          141 LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF  220 (489)
Q Consensus       141 ~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~  220 (489)
                      .+.+.++.++.|++.+...+ ....+.|.. +++|+++.++.+....+|..++|.+++.+.+..| |+..|++.++..++
T Consensus       316 ~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g-~~~~~~~~a~~~~i  392 (402)
T TIGR00897       316 FAVALIIAIALGIFLAGYVP-LAAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFG-AIGVVWIFAALYVV  392 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHH
Confidence            67777888889988776644 345667765 5689999999999999999999999999999988 89999998888777


Q ss_pred             HHHHhhcc
Q 011308          221 LALFMEFC  228 (489)
Q Consensus       221 ~~~~~~~~  228 (489)
                      ..+...|+
T Consensus       393 ~~~~~~~~  400 (402)
T TIGR00897       393 SAFLTAFI  400 (402)
T ss_pred             HHHHHHHh
Confidence            66665543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.39  E-value=5.2e-12  Score=121.42  Aligned_cols=159  Identities=11%  Similarity=0.100  Sum_probs=133.8

Q ss_pred             cchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHH
Q 011308           71 NETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRL  149 (489)
Q Consensus        71 ~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~  149 (489)
                      ....|.+.++ +|.+..+.  |++.+.+.++..++.++.+++.||.++++.+..+.++.+++.++..+.++.+.+.++.+
T Consensus       243 ~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (417)
T PRK10489        243 RVLYPALADEVWQMGAAQI--GLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLA  320 (417)
T ss_pred             HHhhHHHHHhccCCChhHh--HHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            4456666666 88877766  99999999999999999999999988888888888888888888888888888888999


Q ss_pred             HHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH-hhcc
Q 011308          150 FVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF-MEFC  228 (489)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~  228 (489)
                      +.|++.+...+...+++.|..|+++|++++++++....+|..+|+.+.+.+.+..+ ++..+++.++..++..++ ...+
T Consensus       321 ~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~  399 (417)
T PRK10489        321 LFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMT-PVASASASGFGLLIIGVLLLLVL  399 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhc-hhhHHHHHHHHHHHHHHHHHHhc
Confidence            99998887777888899999999999999999999999999999999999999888 788888777665555444 3445


Q ss_pred             cCCh
Q 011308          229 AESP  232 (489)
Q Consensus       229 ~e~~  232 (489)
                      +|.+
T Consensus       400 ~~~~  403 (417)
T PRK10489        400 GELR  403 (417)
T ss_pred             cccc
Confidence            6543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.38  E-value=2.6e-11  Score=115.97  Aligned_cols=176  Identities=17%  Similarity=0.052  Sum_probs=127.5

Q ss_pred             hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 011308          290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMG  366 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (489)
                      ..+..++.+.....-.....+..+.+.++.+.+...   ......++..++.+..|++.||+|||+.+..+.++..++.+
T Consensus         9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~   88 (412)
T TIGR02332         9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST   88 (412)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence            334444444444444455566667666777777666   44555677788999999999999999999999888888877


Q ss_pred             HHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011308          367 VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE--  444 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--  444 (489)
                      +..+..+.        +..+..-.+.+.+.+. ..+....++.|.+|+++|++++|+.+....+|..+++.+.+.+.+  
T Consensus        89 ~~~~~~~~--------~~l~~~r~l~G~~~~~-~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~  159 (412)
T TIGR02332        89 ATMFATGP--------ESLYLLRILVGIAEAG-FLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALD  159 (412)
T ss_pred             HHHHhcCH--------HHHHHHHHHHHHHHhh-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            77664322        2233444444444443 335555678999999999999999999999999999999998875  


Q ss_pred             ----HhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308          445 ----QLGPLILYTIFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       445 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (489)
                          ..||+..|.+.++..++..++.+++.||+.
T Consensus       160 ~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p  193 (412)
T TIGR02332       160 GLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP  193 (412)
T ss_pred             CCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence                358999999988887776666666666654

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.38  E-value=1.7e-12  Score=124.44  Aligned_cols=139  Identities=24%  Similarity=0.188  Sum_probs=112.7

Q ss_pred             hhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH-HHhhhhhHHHHHHHHHH
Q 011308           73 TLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS-MSAITKNLWGMLLGRLF  150 (489)
Q Consensus        73 ~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l  150 (489)
                      .+|. +.+++|.+..+.  +++.+.+.++..++.++.|++.||+|||+.+..+.++..+..+ +....++.+.+.+..++
T Consensus       260 ~~~~~~~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (405)
T TIGR00891       260 LLPTYLKADLGLSPHTV--ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGANVAVLGLGLFF  337 (405)
T ss_pred             hhHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            3444 445678877766  8999999999999999999999999999999888776533322 33345566777777777


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                      .|++.+...+....++.|.+|+++|++++|+.+....+|..++|++++.+.+..|.|+..+..
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       338 QQMLVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHHHHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            787777777888899999999999999999999999999999999999999987756665554

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.38  E-value=1.2e-11  Score=119.29  Aligned_cols=158  Identities=13%  Similarity=0.059  Sum_probs=118.5

Q ss_pred             hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308          306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      .....+.|.+.++.+.+...   ......++..++.++.|++.||+|||+.+..+.++..++.++..+..+.        
T Consensus        40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--------  111 (434)
T PRK11663         40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSL--------  111 (434)
T ss_pred             hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHH--------
Confidence            34566678888888887655   4455667888999999999999999999999888888887766654322        


Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA  462 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      +..+....+.+.+.+.. .+....++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|.+.++++++.
T Consensus       112 ~~l~~~~~l~g~~~g~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~  190 (434)
T PRK11663        112 WAFALLWVLNAFFQGWG-WPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVV  190 (434)
T ss_pred             HHHHHHHHHHHHHHHcc-chHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            22333333444444433 34556688899999999999999999999999999999999999999999998888776655


Q ss_pred             HHHhhhcccC
Q 011308          463 VIYVKRNVME  472 (489)
Q Consensus       463 ~~~~~~~~~~  472 (489)
                      .++..+..+|
T Consensus       191 ~~~~~~~~~~  200 (434)
T PRK11663        191 GLFLCWRLRD  200 (434)
T ss_pred             HHHHHHHcCC
Confidence            5444434443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.38  E-value=8.1e-12  Score=118.52  Aligned_cols=149  Identities=16%  Similarity=0.089  Sum_probs=123.4

Q ss_pred             cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308           71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF  150 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (489)
                      ....|.+.+|.|.+..+.  |.+.+...++..+..++.|++.||+|+|+++..+.+..+++.++.+.+++.+.+++..++
T Consensus       225 ~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (382)
T PRK11128        225 YGFSAIYWQAAGYSASTI--GYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQIL  302 (382)
T ss_pred             HHHHHHHHHHCCCCHhHH--HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            344455667788876666  899998989999999999999999999999999999999988888889999999999999


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      .|++.+...+....++.+. +++++++..+..+ ....+|..+||.++|.+.+..+ + ..|+..++..++.++.
T Consensus       303 ~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g-~-~~~~~~~~~~~~~~~~  374 (382)
T PRK11128        303 HCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLG-A-GVFWVMALVALPALFI  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-H-HHHHHHHHHHHHHHHH
Confidence            9999998888888988887 5666788888876 5567888999999999999988 5 4666666665554433

>PRK03545 putative arabinose transporter; Provisional

Probab=99.37  E-value=1.5e-11  Score=117.11  Aligned_cols=149  Identities=12%  Similarity=0.082  Sum_probs=119.5

Q ss_pred             hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH-HHHhhhhhHHHHHHHHHHHh
Q 011308           74 LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA-SMSAITKNLWGMLLGRLFVG  152 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~-~~~~~~~~~~~l~~~r~l~G  152 (489)
                      .|.+.+++|.+.++.  +++.+.+.++..+++++.|+++||+|||++.. +..+..++. .+....++.+.+.++.++.|
T Consensus       229 ~~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g  305 (390)
T PRK03545        229 EPFVQQVAGLSENFA--TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG  305 (390)
T ss_pred             HHHHHHhcCCCccHH--HHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            344555678877766  89999999999999999999999999887544 444444443 33455677888888999999


Q ss_pred             hcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308          153 TGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF  227 (489)
Q Consensus       153 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~  227 (489)
                      ++.+...+.....+.+..| ++|++++++++....+|..+|+.++|.+.+..+ ++..|++.+++.++..+....
T Consensus       306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g-~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLG-LSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHHHHHHH
Confidence            9887777777788888876 578999999999999999999999999999999 999999988887776555433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.37  E-value=2e-11  Score=116.07  Aligned_cols=155  Identities=14%  Similarity=0.137  Sum_probs=117.9

Q ss_pred             HhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308          310 YFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ..+|.+.++.+.+....   .....++..++.++.|++.||+|||+.+..+.++.+++.++..+..+        .+..+
T Consensus        41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~  112 (394)
T PRK10213         41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANS--------FSLLL  112 (394)
T ss_pred             hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHCh--------HHHHH
Confidence            34667777888877663   34556778889999999999999999999999988887766655422        23344


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 011308          387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ..-.+.+.+.+. ..+....++.|.+|+++|+++.++.....+++..++|.+.+.+.+..||+..|.+.++++++..+..
T Consensus       113 ~~r~l~G~~~g~-~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~  191 (394)
T PRK10213        113 IGRACLGLALGG-FWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWI  191 (394)
T ss_pred             HHHHHHHHhhHH-HHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence            444444444443 3456666888999999999999999999999999999999999999999999998887777665555


Q ss_pred             hhcccCC
Q 011308          467 KRNVMET  473 (489)
Q Consensus       467 ~~~~~~~  473 (489)
                      ....||+
T Consensus       192 ~~~~p~~  198 (394)
T PRK10213        192 IKSLPSL  198 (394)
T ss_pred             HHHCCCC
Confidence            4445554

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.37  E-value=5.9e-12  Score=123.65  Aligned_cols=178  Identities=19%  Similarity=0.076  Sum_probs=131.2

Q ss_pred             HHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHH
Q 011308           52 HVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIG  131 (489)
Q Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~  131 (489)
                      .+...++..+.............|.+.+++|.+..+.  ++......++..++.++.|+++||+|||+.+..+.++.+++
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  362 (481)
T TIGR00879       285 LFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHA--FLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAIC  362 (481)
T ss_pred             HHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3334444444444444445556788888889887655  88888999999999999999999999999999998888887


Q ss_pred             HHHHhh-----hh------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccc
Q 011308          132 ASMSAI-----TK------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPA  200 (489)
Q Consensus       132 ~~~~~~-----~~------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l  200 (489)
                      .++.++     .+      +...+....++.+.......+....++.|.+|+++|++++++.+....+|.++++.+.+.+
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~  442 (481)
T TIGR00879       363 LFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTM  442 (481)
T ss_pred             HHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776652     11      2223333333333322334466677889999999999999999999999999999999999


Q ss_pred             ccccchHHHHHHHhHHHHHHHHHHhhc-ccCCh
Q 011308          201 KEILGWWRICFWVATIPAAFLALFMEF-CAESP  232 (489)
Q Consensus       201 ~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~  232 (489)
                      .+..+ |++.|++.++.+++..+..++ .||++
T Consensus       443 ~~~~~-~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       443 LESIG-VGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             HHhcC-ccceehhHHHHHHHHHHHHheecccCC
Confidence            88888 999999888887776665544 56543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.36  E-value=2e-11  Score=116.25  Aligned_cols=160  Identities=16%  Similarity=0.107  Sum_probs=118.6

Q ss_pred             hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308          306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      .......|.+.++.+.+...   ......++..++.++.|++.||+|||+.+..+.++..++.+...+...        .
T Consensus        22 ~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~--------~   93 (385)
T TIGR00710        22 DMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNN--------I   93 (385)
T ss_pred             HHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------H
Confidence            33334456777777877665   445556778899999999999999999999888888777776655432        1


Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA  462 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      +.......+.+.+.+. ..+....++.|.+|+++|+++.|+.+....+|..++|.+.+.+.+..+|+..+.+.+++.++.
T Consensus        94 ~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  172 (385)
T TIGR00710        94 ETLLVLRFVQAFGASA-GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILL  172 (385)
T ss_pred             HHHHHHHHHHHcchhH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            2233333333333332 234556688899999999999999999999999999999999999999999998888887777


Q ss_pred             HHHhhhcccCCC
Q 011308          463 VIYVKRNVMETK  474 (489)
Q Consensus       463 ~~~~~~~~~~~~  474 (489)
                      .++.++..||++
T Consensus       173 ~~~~~~~~~~~~  184 (385)
T TIGR00710       173 SALIFFILPETL  184 (385)
T ss_pred             HHHHHHhCCCCC
Confidence            766665566554

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.35  E-value=3.8e-12  Score=114.50  Aligned_cols=175  Identities=11%  Similarity=0.045  Sum_probs=138.9

Q ss_pred             hhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHH
Q 011308          290 VFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMG  366 (489)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~  366 (489)
                      +++..++.+...+..--.+..-.|.+.++.+++.+.   +.+.+.+..-++.++.|.++||.+.|..+..++++.++..+
T Consensus        30 if~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~ni  109 (448)
T COG2271          30 IFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNI  109 (448)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHH
Confidence            333444433333333445556667777777787776   55666788889999999999999999999999999999999


Q ss_pred             HHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Q 011308          367 VQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLF--LRLLE  444 (489)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~--g~l~~  444 (489)
                      ++.+..+        .++..+...+-+.+.+.++.|... .+..-+|++.||+..++-|...++|+.+.|.+.  +.+.+
T Consensus       110 l~Gfs~s--------~~~~~~l~~lng~fQg~Gwpp~~~-~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~  180 (448)
T COG2271         110 LFGFSPS--------LFLFAVLWVLNGWFQGMGWPPCAR-TITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAF  180 (448)
T ss_pred             HHhhhhH--------HHHHHHHHHHHHHHhcCCCcHHHH-HHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHh
Confidence            9888753        344566667777778888777766 677888999999999999999999999999999  88888


Q ss_pred             HhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          445 QLGPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      +.+|+..|++-++++++..++.++..+++
T Consensus       181 ~~~w~~~f~~pgiiaiival~~~~~~rd~  209 (448)
T COG2271         181 HGGWRAAFYFPGIIAIIVALILLFLLRDR  209 (448)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            88999999999999988888777666554

>TIGR00895 2A0115 benzoate transport

Probab=99.35  E-value=1.5e-11  Score=117.65  Aligned_cols=161  Identities=22%  Similarity=0.177  Sum_probs=118.9

Q ss_pred             chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .......+.|.+.++.+.+...   ......++..++.++.|+++||++||+.+..+.++..++.++..+..+       
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~-------  104 (398)
T TIGR00895        32 DLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATN-------  104 (398)
T ss_pred             HHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccc-------
Confidence            3445566677777777777655   444556778899999999999999999998888877777666554321       


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF  460 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  460 (489)
                       .+..++...+.+.+.+ ...+...+++.|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..+.+.+++++
T Consensus       105 -~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~  182 (398)
T TIGR00895       105 -VTQLLILRFLAGLGLG-GLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPL  182 (398)
T ss_pred             -hHHHHHHHHHHhcccc-cchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHH
Confidence             2223333444443333 23456667899999999999999999999999999999999999999999988888876666


Q ss_pred             HHHHHhhhcccCC
Q 011308          461 LAVIYVKRNVMET  473 (489)
Q Consensus       461 ~~~~~~~~~~~~~  473 (489)
                      +..++.....+++
T Consensus       183 ~~~~~~~~~~~~~  195 (398)
T TIGR00895       183 LLLLLLMRFLPES  195 (398)
T ss_pred             HHHHHHHHhCCCC
Confidence            6665555555554

>PRK09952 shikimate transporter; Provisional

Probab=99.35  E-value=8.5e-12  Score=120.37  Aligned_cols=157  Identities=15%  Similarity=0.136  Sum_probs=113.3

Q ss_pred             hhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh---h-hhHHHHHHH
Q 011308           73 TLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI---T-KNLWGMLLG  147 (489)
Q Consensus        73 ~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~-~~~~~l~~~  147 (489)
                      ..|. +.+++|.+.+..  ..+.....+...++.++.|+++||+|||+++..+.++..++.+....   . ++.+.+++.
T Consensus       272 ~~~~y~~~~~g~s~~~~--~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T PRK09952        272 FALNYSTQNLGLPRELF--LNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFS  349 (438)
T ss_pred             HHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            3443 456677766543  44555556667788899999999999999998887766554433322   1 234444556


Q ss_pred             HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHH-HHHHHHHHHHHHhhccccccc-chHHHHHHHhHHHHHHHHHHh
Q 011308          148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQ-IAACLGILVALFVGLPAKEIL-GWWRICFWVATIPAAFLALFM  225 (489)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~-~~~~~G~~i~~~~~~~l~~~~-~~Wr~~f~~~~~~~~~~~~~~  225 (489)
                      .++.|++.+...+...+++.|.+|.+.|+.+.++.. .+..+|..++|.+.+++.+.. ++|+..+...++..++..+..
T Consensus       350 ~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~  429 (438)
T PRK09952        350 IMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTA  429 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH
Confidence            677788888888888999999999999988888854 445588899999999988744 238888888777777776666


Q ss_pred             hcccCC
Q 011308          226 EFCAES  231 (489)
Q Consensus       226 ~~~~e~  231 (489)
                      +.++|+
T Consensus       430 ~~~~~~  435 (438)
T PRK09952        430 LLMKDN  435 (438)
T ss_pred             HHcccc
Confidence            556654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.33  E-value=1.6e-11  Score=120.83  Aligned_cols=162  Identities=17%  Similarity=0.070  Sum_probs=123.5

Q ss_pred             chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .........|.+.++.+.+...   ......++..++.++.|++.||+|||+.+..+.++..++.++..+..        
T Consensus        17 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------   88 (485)
T TIGR00711        17 DSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--------   88 (485)
T ss_pred             HHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--------
Confidence            3455666778888888876554   55667788899999999999999999999999888888777665432        


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF  460 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  460 (489)
                      +.+..+....+.+.+.+ ...+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.++.||++.|++.+.+++
T Consensus        89 ~~~~l~~~~~~~G~~~~-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~  167 (485)
T TIGR00711        89 NLELMIIFRVIQGFGGG-PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGI  167 (485)
T ss_pred             CHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHH
Confidence            22333444444444333 23456667889999999999999999999999999999999999999999999998887777


Q ss_pred             HHHHHhhhcccCCC
Q 011308          461 LAVIYVKRNVMETK  474 (489)
Q Consensus       461 ~~~~~~~~~~~~~~  474 (489)
                      +..++..+..++++
T Consensus       168 ~~~~~~~~~~~~~~  181 (485)
T TIGR00711       168 IVVVVAFFILPRDK  181 (485)
T ss_pred             HHHHHHHHHcCCcc
Confidence            77666655555543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.31  E-value=4.4e-11  Score=117.31  Aligned_cols=167  Identities=16%  Similarity=0.027  Sum_probs=122.4

Q ss_pred             HhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhc
Q 011308          298 ALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATS  374 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  374 (489)
                      .+....-.+....-+|.+.++.+.+...   ....+.++...+.+..|+++||+|||+.+..+.++..++.++..+..+ 
T Consensus        15 ~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~-   93 (495)
T PRK14995         15 YIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPT-   93 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCC-
Confidence            3333334455666678888888776654   444556777788899999999999999999999988888877765432 


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 011308          375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEI-FPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT  453 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  453 (489)
                             .+..++.-.+.+.+.+. ..+.....+.+. .|+++|++++|+......+|..++|.+.+.+.++.||++.|+
T Consensus        94 -------~~~li~~r~l~G~g~~~-~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~  165 (495)
T PRK14995         94 -------ASWLIATRALLAIGAAM-IVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFL  165 (495)
T ss_pred             -------HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Confidence                   23344444455554443 223333334444 477899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcccCC
Q 011308          454 IFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~  473 (489)
                      +...++++..++..+..|+.
T Consensus       166 i~~~~~~~~~~l~~~~l~~~  185 (495)
T PRK14995        166 INVPIVLVVMGLTARYVPRQ  185 (495)
T ss_pred             HHHHHHHHHHHHHHHhCCCC
Confidence            98888777776666666654

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.31  E-value=6.7e-11  Score=111.69  Aligned_cols=158  Identities=12%  Similarity=0.015  Sum_probs=113.7

Q ss_pred             HHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchh
Q 011308          307 AVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALS  383 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (489)
                      .....+|.+..+.+.+...   ......++..++.++.|+++||+|||+.+..+.++..++..+..+.....   ..+.+
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~   93 (365)
T TIGR00900        17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG---GLNIW   93 (365)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC---CCcHH
Confidence            3344445555555555444   44555678888999999999999999999988887777666655543211   12334


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 011308          384 LSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAV  463 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      ..+....+.+.+.+. ..+...+++.|.+|+++|++++|+.+....+|..++|.+.+.+.+..||+..|.+.++..+++.
T Consensus        94 ~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~  172 (365)
T TIGR00900        94 QVYVLAGILAIAQAF-FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISA  172 (365)
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            444445454444443 3355667889999999999999999999999999999999999999999998888777666655


Q ss_pred             HHhhh
Q 011308          464 IYVKR  468 (489)
Q Consensus       464 ~~~~~  468 (489)
                      ++.+.
T Consensus       173 ~~~~~  177 (365)
T TIGR00900       173 LLIVS  177 (365)
T ss_pred             HHHHh
Confidence            54443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.31  E-value=4.3e-11  Score=114.17  Aligned_cols=169  Identities=17%  Similarity=0.142  Sum_probs=120.8

Q ss_pred             HHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308          297 FALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT  373 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (489)
                      ...............+|.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+.+...++..+.....+
T Consensus        11 ~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~   90 (392)
T PRK10473         11 LVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAET   90 (392)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCc
Confidence            33333334445556678888888777665   344555677888999999999999999999888887777766654322


Q ss_pred             cccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 011308          374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT  453 (489)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  453 (489)
                              .+..+....+.+.+.+. ..+....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..||+..|.
T Consensus        91 --------~~~~~~~~~l~g~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~  161 (392)
T PRK10473         91 --------SSLFLAGRFLQGIGAGC-CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFY  161 (392)
T ss_pred             --------HHHHHHHHHHHHhhhhH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHH
Confidence                    12223333333333222 223456678899999999999999999999999999999998888889998898


Q ss_pred             HHHHHHHHHHHHhhhcccCCC
Q 011308          454 IFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~~~~  474 (489)
                      +.++++++..++.....+|++
T Consensus       162 ~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        162 TMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHHHHHcCCCC
Confidence            888887777666655556554

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.30  E-value=9.4e-11  Score=114.24  Aligned_cols=156  Identities=12%  Similarity=0.004  Sum_probs=107.6

Q ss_pred             hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308          306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      .....+.+.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+.+...++.++..+..+        .
T Consensus        53 ~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s--------~  124 (476)
T PLN00028         53 FAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS--------A  124 (476)
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC--------H
Confidence            34445567777888887665   334455677789999999999999999988888777777665554422        1


Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HhccchhhH
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE---------QLGPLILYT  453 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~---------~~g~~~~~~  453 (489)
                      ...+....+.+.+.+. ..+ ...++.|.+|+++||.++|+.+...++|..+++.+.+.+..         ..||+..|.
T Consensus       125 ~~l~~~r~l~G~~~~~-~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~  202 (476)
T PLN00028        125 TGFIAVRFFIGFSLAT-FVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFF  202 (476)
T ss_pred             HHHHHHHHHHHHHHHh-hHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHH
Confidence            2233333334433332 222 33467899999999999999998888888888777665533         147999999


Q ss_pred             HHHHHHHHHHHHhhhccc
Q 011308          454 IFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       454 ~~~~~~~~~~~~~~~~~~  471 (489)
                      +.++++++..++.+++.+
T Consensus       203 i~g~l~l~~~l~~~~~~~  220 (476)
T PLN00028        203 VPGLLHIIMGILVLTLGQ  220 (476)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            998888777666554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.29  E-value=1.1e-10  Score=114.71  Aligned_cols=160  Identities=20%  Similarity=0.113  Sum_probs=116.0

Q ss_pred             ccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--h-HH-HHH
Q 011308           70 VNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--N-LW-GML  145 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~-~~-~l~  145 (489)
                      .....|.+.++.|.+....  ++......+...++.++.|+++||+|||++++.+.++.+++.++.+...  + .+ ...
T Consensus       290 ~~~~~p~i~~~~g~~~~~~--~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~  367 (479)
T PRK10077        290 VLYYAPEIFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL  367 (479)
T ss_pred             HHHHHHHHHHHcCCCCchH--HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence            3445688888888876655  5666777888889999999999999999999999999888877765432  1 11 222


Q ss_pred             HHHHHHhhcccc-hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc------ccccccchHHHHHHHhHHHH
Q 011308          146 LGRLFVGTGMGI-GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL------PAKEILGWWRICFWVATIPA  218 (489)
Q Consensus       146 ~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~------~l~~~~~~Wr~~f~~~~~~~  218 (489)
                      .+.++.+.+.+. ..+....++.|.+|+++|++++++......+|..+++.+.+      ++.+..+ |++.|++.++..
T Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~  446 (479)
T PRK10077        368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFH-NGFSYWIYGCMG  446 (479)
T ss_pred             HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhcc-CccHHHHHHHHH
Confidence            333444444333 33677899999999999999999999988888888755543      4445666 788888888776


Q ss_pred             HHHHHHhh-cccCCh
Q 011308          219 AFLALFME-FCAESP  232 (489)
Q Consensus       219 ~~~~~~~~-~~~e~~  232 (489)
                      ++..+..+ +.||+.
T Consensus       447 ~~~~~~~~~~~~e~~  461 (479)
T PRK10077        447 VLAALFMWKFVPETK  461 (479)
T ss_pred             HHHHHHHHhccccCC
Confidence            66655544 456653

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.28  E-value=7e-11  Score=113.01  Aligned_cols=154  Identities=16%  Similarity=0.131  Sum_probs=113.7

Q ss_pred             HHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHH
Q 011308          312 SSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      +|.+.++.+.+...   ....+.++..++.+..|+++||+|||+.+..+..+..++.++..+..+        .+..++.
T Consensus        39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~--------~~~l~~~  110 (413)
T PRK15403         39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTS--------MTQFLIA  110 (413)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHH
Confidence            34555566666555   445556788889999999999999999999888877777666654322        2233444


Q ss_pred             HHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          389 MLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      -.+.+.+.+. ..+....++.|.+|++++++++++.+....++..++|.+.+.+.+..||+..|++.+++.++..+..++
T Consensus       111 r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~  189 (413)
T PRK15403        111 RFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLL  189 (413)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443332 233445678899999999999999999999999999999999998889999999998888777666555


Q ss_pred             cccCCC
Q 011308          469 NVMETK  474 (489)
Q Consensus       469 ~~~~~~  474 (489)
                      ..||++
T Consensus       190 ~lp~~~  195 (413)
T PRK15403        190 AMPETV  195 (413)
T ss_pred             hCCCCc
Confidence            566653

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=99.28  E-value=8e-11  Score=112.88  Aligned_cols=180  Identities=16%  Similarity=0.176  Sum_probs=144.8

Q ss_pred             hhHHHHHHHHhhhhccccccccch-hhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCch--hHhhhhhH
Q 011308           50 LPHVLVAIISSFLFGYHLGVVNET-LESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRR--RAFQLCAL  126 (489)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~  126 (489)
                      .+.+....++.++..-..+.+... ...-.+++|++..+.  ..+.-+..+..++|++++|++.||+|.|  +++..+++
T Consensus       280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l--~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~  357 (477)
T PF11700_consen  280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQL--IVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLI  357 (477)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence            344444455555443333333333 334455899988887  6777778888899999999999999999  99999988


Q ss_pred             HHHHHHHHHhh--------hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 011308          127 PMIIGASMSAI--------TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL  198 (489)
Q Consensus       127 ~~~i~~~~~~~--------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~  198 (489)
                      ++.+..+...+        .++-+.+.+.-++.|+..|...+...++.++..|+++.+..+|++....-....+||++-+
T Consensus       358 ~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g  437 (477)
T PF11700_consen  358 LWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFG  437 (477)
T ss_pred             HHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88766666655        6788889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccchHHHHHHHhHHHHHHHHHHhhcccCC
Q 011308          199 PAKEILGWWRICFWVATIPAAFLALFMEFCAES  231 (489)
Q Consensus       199 ~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~  231 (489)
                      .+.+..++-|+.+....++.++.+++.++++.+
T Consensus       438 ~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~  470 (477)
T PF11700_consen  438 LITDATGSQRYGFLFLLVLFLIGLILLFFVDVE  470 (477)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHhhccch
Confidence            999988767888888887777777776666543

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.28  E-value=1.1e-10  Score=111.79  Aligned_cols=178  Identities=15%  Similarity=0.083  Sum_probs=122.3

Q ss_pred             cchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308          288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA  364 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (489)
                      +...+...+..+........+...++.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+.....++
T Consensus        12 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~   91 (406)
T PRK15402         12 LLFPLCLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILT   91 (406)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            33333444444333333343444456667777777655   344566778889999999999999999998888777777


Q ss_pred             HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      .+......+        .+..+....+.+.+.+. ..+.....+.|.+|++.++++.++......++..++|.+.+.+.+
T Consensus        92 ~~~~~~~~~--------~~~l~~~~~l~G~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~  162 (406)
T PRK15402         92 CLAILLAQS--------IEQFTLLRFLQGIGLCF-IGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIH  162 (406)
T ss_pred             HHHHHHHcc--------HHHHHHHHHHHHhHhhh-HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666554322        12233333333333322 234556678899999999999999998888999999999999999


Q ss_pred             HhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308          445 QLGPLILYTIFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       445 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (489)
                      ..+|+..|++.++++++..+..+...||++
T Consensus       163 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (406)
T PRK15402        163 VLPWRGMFVLFAALAALSFFGLWRAMPETA  192 (406)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            889999999888888777666555566554

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.28  E-value=1.1e-10  Score=110.73  Aligned_cols=160  Identities=13%  Similarity=0.051  Sum_probs=120.0

Q ss_pred             hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308          306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      ......+|.+.++.+.+...   ......++..++.++.|++.||+|||+.+..+..+.+++.++..+..+        .
T Consensus        20 ~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~--------~   91 (382)
T PRK10091         20 FGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSS--------Y   91 (382)
T ss_pred             HHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCc--------H
Confidence            34445667777777877655   556667888999999999999999999999998888888777665432        2


Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA  462 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      +..++...+.+.+.+.. .+.......|.+|+++|+.++++......++..++|.+.+.+.+..||+..|.+.+++.++.
T Consensus        92 ~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~  170 (382)
T PRK10091         92 LMLAIGRLVSGFPHGAF-FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAV  170 (382)
T ss_pred             HHHHHHHHHHHhhhHHH-HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHH
Confidence            33344444444443322 23445567888898899999999999999999999999999999899999999988877776


Q ss_pred             HHHhhhcccCCC
Q 011308          463 VIYVKRNVMETK  474 (489)
Q Consensus       463 ~~~~~~~~~~~~  474 (489)
                      .+..++..||.+
T Consensus       171 ~~~~~~~lp~~~  182 (382)
T PRK10091        171 LASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHhCCCCC
Confidence            665555566643

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.27  E-value=8.2e-11  Score=112.13  Aligned_cols=150  Identities=17%  Similarity=0.106  Sum_probs=108.6

Q ss_pred             HHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHH
Q 011308          314 TVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      .+.++.+.+........   .+...+..++.|+++||++||+.+..+.....++.+.+.+..        +.+..+....
T Consensus        36 ~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~  107 (400)
T PRK11646         36 RFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAH--------EPWLLWLSCI  107 (400)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHH
Confidence            33455677766644444   455566688899999999999999999988888877765432        2233334444


Q ss_pred             HHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308          391 LFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV  470 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      +.+.+.+. ..+...+++.|.+|+++|++++|+.+...++|..++|.+.+.+. ..||+..|++.+.++++..++.....
T Consensus       108 l~g~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~  185 (400)
T PRK11646        108 LSGLGGTL-FDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLL  185 (400)
T ss_pred             HHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44444332 33455667889999999999999999999999999999999998 67999999888877776655544445


Q ss_pred             cCC
Q 011308          471 MET  473 (489)
Q Consensus       471 ~~~  473 (489)
                      |+.
T Consensus       186 ~~~  188 (400)
T PRK11646        186 PAY  188 (400)
T ss_pred             Ccc
Confidence            543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.27  E-value=3.4e-11  Score=113.11  Aligned_cols=157  Identities=19%  Similarity=0.126  Sum_probs=115.9

Q ss_pred             hHHHHhHH-HHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011308          306 NAVFYFSS-TVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA  381 (489)
Q Consensus       306 ~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (489)
                      .......+ .+.++.+.+...   ......++..++.++.|+++||+|||+.+..+.++.+++.++..+.        .+
T Consensus        13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~--------~~   84 (352)
T PF07690_consen   13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA--------SN   84 (352)
T ss_dssp             HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH--------CC
T ss_pred             HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh--------hh
Confidence            34444555 555667776666   4445567888999999999999999999999988888884444432        11


Q ss_pred             hhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 011308          382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFL  461 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  461 (489)
                      .+..+....+.+.+.+ ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|++.++++++
T Consensus        85 ~~~~~~~~~l~g~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~  163 (352)
T PF07690_consen   85 FWLLLIARFLLGIGSG-FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLI  163 (352)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHH
T ss_pred             HHHHhhhccccccccc-cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhh
Confidence            2334444445554443 234566778999999999999999999999999999999999999888999999999999888


Q ss_pred             HHHHhhhccc
Q 011308          462 AVIYVKRNVM  471 (489)
Q Consensus       462 ~~~~~~~~~~  471 (489)
                      ..++...+.+
T Consensus       164 ~~il~~~~~~  173 (352)
T PF07690_consen  164 AAILFILFLP  173 (352)
T ss_dssp             HHHHHHCCC-
T ss_pred             hhhhHhhhhh
Confidence            8775333333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=99.27  E-value=2.4e-10  Score=105.71  Aligned_cols=175  Identities=14%  Similarity=0.138  Sum_probs=124.0

Q ss_pred             hhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHH
Q 011308          280 ELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLG  356 (489)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~  356 (489)
                      +++.++....+++...++.+    +...+.+++--++++.+.....   .....-.+.++.-++.+++.+|+|+-+++..
T Consensus       366 ~~~~s~~~llff~~av~mG~----g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~l  441 (618)
T KOG3762|consen  366 KVFASPHILLFFFVAVVMGA----GVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYL  441 (618)
T ss_pred             HHhcCCCEEehhHHHHHHHH----HHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeee
Confidence            45666666655555555554    3344444444455555533333   3344446778888899999999999999998


Q ss_pred             HHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHH-HHHHHHH
Q 011308          357 SFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVH-WVINFFV  435 (489)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~~~  435 (489)
                      ++.+..+=++.+....+        +|.++..-++-+...+..+..+ .+|++...|++.+.++.|+..... .+|-.+|
T Consensus       442 gLa~~~~Rf~~~S~L~n--------~W~vLPieilqgit~aliWaa~-~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~G  512 (618)
T KOG3762|consen  442 GLACNVGRFLYYSYLQN--------PWMVLPIEILQGITHALIWAAI-ISYASHVAPPGLRATAQGLLQGIFHGLGKGLG  512 (618)
T ss_pred             hhhHHHHHHHHHHHhcC--------chheeeHHHHHHHHHHHHHHHH-HHHHHhhCCCcchHHHHHHHHHHhcccCcchh
Confidence            88888877766665533        3445555566666666555434 448999999999999999998865 5788999


Q ss_pred             HHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308          436 GLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       436 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ..++|.+.+.+|....|..+++.|++..++..
T Consensus       513 slIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  513 SLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             hhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988888888887777665543

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.27  E-value=1.6e-10  Score=108.33  Aligned_cols=159  Identities=17%  Similarity=0.079  Sum_probs=112.7

Q ss_pred             hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308          306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      ..+...+|.+.++.+.+...   ......++..++.+..|+++||+|||+.+.........+.+.. ...       .+.
T Consensus         8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~~-------~~~   79 (368)
T TIGR00903         8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LDP-------FNY   79 (368)
T ss_pred             HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HHh-------ccH
Confidence            44555677777777777666   3444567788999999999999999887665544443332211 110       122


Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA  462 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      ...+..-++.+.+.+.  .+.......|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+++.++.
T Consensus        80 ~~l~~~R~l~G~g~~~--~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~  157 (368)
T TIGR00903        80 EWLLACQLLAALGQPF--LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAG  157 (368)
T ss_pred             HHHHHHHHHHHhHhHH--HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence            3344444555544432  22333456788999999999999999999999999999999999999999999988888887


Q ss_pred             HHHhhhcccCCC
Q 011308          463 VIYVKRNVMETK  474 (489)
Q Consensus       463 ~~~~~~~~~~~~  474 (489)
                      .++.++..||..
T Consensus       158 ~~~~~~~lp~~p  169 (368)
T TIGR00903       158 IILVLAALPALP  169 (368)
T ss_pred             HHHHHHHcCCCC
Confidence            777776777643

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.27  E-value=6.6e-11  Score=114.84  Aligned_cols=155  Identities=15%  Similarity=0.124  Sum_probs=106.7

Q ss_pred             cccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc--CchhHh-hhhhHHHHHHHHHHhh--hhhHH
Q 011308           69 VVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI--GRRRAF-QLCALPMIIGASMSAI--TKNLW  142 (489)
Q Consensus        69 ~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l-~~~~~~~~i~~~~~~~--~~~~~  142 (489)
                      .....+|.+.++ .|.+..+.  +++...+.++..++.++.|+++||+  |||+.. .....+..++.++..+  ..+.+
T Consensus       271 ~~~~~~P~~l~~~~g~s~~~~--~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~  348 (452)
T PRK11273        271 GILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPT  348 (452)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChH
Confidence            344566766554 68877666  8888889999999999999999999  555432 2222333333332222  23444


Q ss_pred             HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHH-HHHHhhcccccccchHHHHHHHhHHHHHHH
Q 011308          143 GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGIL-VALFVGLPAKEILGWWRICFWVATIPAAFL  221 (489)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~-i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~  221 (489)
                      ...++.++.|.+..........+..|.+|+++|++++|+.+....+|.. ++|.+.+.+.+..| |+..|++.++.+++.
T Consensus       349 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g-~~~~f~~~~~~~~~~  427 (452)
T PRK11273        349 VDMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILA  427 (452)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            4455555566543333333445678999999999999999888777765 57999999999988 999999888777666


Q ss_pred             HHHhh
Q 011308          222 ALFME  226 (489)
Q Consensus       222 ~~~~~  226 (489)
                      ++...
T Consensus       428 ~~~~~  432 (452)
T PRK11273        428 VILLI  432 (452)
T ss_pred             HHHHH
Confidence            55543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.27  E-value=7.1e-11  Score=116.20  Aligned_cols=161  Identities=15%  Similarity=0.042  Sum_probs=107.7

Q ss_pred             cchhhhhhhcccccccchH---------HHH-HHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhh
Q 011308           71 NETLESISLDLGFSGSTMA---------EGL-VVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKN  140 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~---------~g~-~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~  140 (489)
                      ....|.+.++.|.+..+..         ... ......++..++.++.++++||+|||++++.+.++.+++.++.++..+
T Consensus       308 ~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~  387 (502)
T TIGR00887       308 NLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN  387 (502)
T ss_pred             ccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence            3346777777777644210         001 233344566678889999999999999998888887777665554321


Q ss_pred             ----HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccccc----------ch
Q 011308          141 ----LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEIL----------GW  206 (489)
Q Consensus       141 ----~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~----------~~  206 (489)
                          ...+...-+...++.....+....+..|.+|.+.|+++.++.+....+|.++++.+.+.+.+..          + 
T Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-  466 (502)
T TIGR00887       388 HLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW-  466 (502)
T ss_pred             hcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc-
Confidence                1111111111122222234556677899999999999999999999999999999998887742          2 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308          207 WRICFWVATIPAAFLALFMEFCAESP  232 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~~e~~  232 (489)
                      +...|++.++..++..+..+++||+.
T Consensus       467 ~~~~~~i~~~~~~~~~i~~~~lpEt~  492 (502)
T TIGR00887       467 MGHVLEIFALFMFLGILFTLLIPETK  492 (502)
T ss_pred             chHHHHHHHHHHHHHHHHheEeccCC
Confidence            45677777777766656566678864

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.26  E-value=3.5e-11  Score=114.88  Aligned_cols=133  Identities=11%  Similarity=0.065  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS  170 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (489)
                      |.+.+...+...++.+..|++.||+|||+.+.++.++.++...+...+++.+.+++.++++|++..........++.+..
T Consensus       257 g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  336 (396)
T TIGR00882       257 GYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYITSQF  336 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            88888888889999999999999999999999999999988888788889999999999999987766666667788888


Q ss_pred             CccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          171 PAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       171 ~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      +++.++...+. ++....+|..+++.++|++.+..| |+..|.+.++..++..+.
T Consensus       337 ~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G-~~~~f~~~~~~~~i~~~~  390 (396)
T TIGR00882       337 DVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIG-FQGAYLVLGCIVLLFTLI  390 (396)
T ss_pred             CcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcc-cHHHHHHHHHHHHHHHHH
Confidence            88887776665 667889999999999999999888 999999988887666554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.26  E-value=3.6e-11  Score=114.18  Aligned_cols=160  Identities=12%  Similarity=0.029  Sum_probs=117.3

Q ss_pred             hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011308          305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA  381 (489)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (489)
                      ........|.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+.++..++.++..+...        
T Consensus        11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------   82 (379)
T TIGR00881        11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTS--------   82 (379)
T ss_pred             HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhh--------
Confidence            344445566666777777665   455666788899999999999999999999998888888777766542        


Q ss_pred             hhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhccchhhHHHHHHHH
Q 011308          382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG-LLFLRLLEQLGPLILYTIFGSFCF  460 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~-~~~g~l~~~~g~~~~~~~~~~~~~  460 (489)
                      .+..++...+.+.+.+ ...+...+++.|.+|+++|+++.++.+....+|..++| .+.+.+.+..+|+..|.+.+++.+
T Consensus        83 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (379)
T TIGR00881        83 LWVMAALWALNGIFQG-MGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAI  161 (379)
T ss_pred             HHHHHHHHHHHHhhcc-ccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            2333344444444333 23456677889999999999999999999999999999 466666677789988888887777


Q ss_pred             HHHHHhhhcccCC
Q 011308          461 LAVIYVKRNVMET  473 (489)
Q Consensus       461 ~~~~~~~~~~~~~  473 (489)
                      +..++.+...+++
T Consensus       162 ~~~~~~~~~~~~~  174 (379)
T TIGR00881       162 IVSLICFLLLRDS  174 (379)
T ss_pred             HHHHHHheeeCCC
Confidence            7666655555543

>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]

Probab=99.26  E-value=4.7e-11  Score=115.12  Aligned_cols=177  Identities=16%  Similarity=0.171  Sum_probs=157.0

Q ss_pred             hHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccC--chhHhhhhhHHH
Q 011308           51 PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIG--RRRAFQLCALPM  128 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G--rr~~l~~~~~~~  128 (489)
                      +..+...+...+...........+|.+.++.+.+.++.  +.+.++..+...++.++.|+++|+..  ++.+..++++..
T Consensus       298 ~~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~a--a~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~  375 (509)
T KOG2504|consen  298 PKFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDA--AFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIA  375 (509)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhh--HHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHH
Confidence            34556666667777777777888999999999888887  89999999999999999999999988  566677888888


Q ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308          129 IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR  208 (489)
Q Consensus       129 ~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr  208 (489)
                      +++.+.++++++++.++....+.|++.|.........+.|..+.++-..+.|+.....+++..+||++++.+.+..++|.
T Consensus       376 gl~~~~~p~~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~  455 (509)
T KOG2504|consen  376 GLARLFLPFATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYD  455 (509)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCee
Confidence            99999999999999999999999999999988888899999999999999999999999999999999999999988899


Q ss_pred             HHHHHhHHHHHHHHHHhhccc
Q 011308          209 ICFWVATIPAAFLALFMEFCA  229 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~~~~~~  229 (489)
                      ..|+..++..++..+.++..+
T Consensus       456 ~~f~~~g~~~~~s~~~~~~~~  476 (509)
T KOG2504|consen  456 HAFYFCGLCFLLSAVLLLILR  476 (509)
T ss_pred             eehhhcChHHHHHHHHHHHhH
Confidence            999999998888877766655

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.26  E-value=9.7e-11  Score=113.53  Aligned_cols=153  Identities=21%  Similarity=0.248  Sum_probs=135.2

Q ss_pred             cccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHH
Q 011308           69 VVNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLG  147 (489)
Q Consensus        69 ~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~  147 (489)
                      .+...+|.+.+ ++|.+....  |++.+.+.+|..++.++.+++.+|+++++++..+.++++++.+..+++++.+..++.
T Consensus       236 a~~aLlPl~a~~~l~~~a~~y--Gll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~  313 (524)
T PF05977_consen  236 AVWALLPLFARDVLGGGASGY--GLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPSFWLALIA  313 (524)
T ss_pred             HHHHhhhHHHHHHhCCcHHHH--HHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            34456777764 577776666  999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          148 RLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       148 r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      -++.|++.....+...+.+.+..|++.||++++++.+....+..+|..+.|.+.+..| -+..+.+.++..++..++
T Consensus       314 l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g-~~~al~~a~~~lll~~~~  389 (524)
T PF05977_consen  314 LFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG-VRTALLIAGAALLLSALI  389 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHH
Confidence            9999999888888889999999999999999999999999999999999999999998 788888777655554444

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.26  E-value=1.9e-10  Score=109.73  Aligned_cols=155  Identities=14%  Similarity=0.073  Sum_probs=111.8

Q ss_pred             hHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHH
Q 011308          311 FSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLG  387 (489)
Q Consensus       311 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      .+|.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+..+..++.+......+        .+..+.
T Consensus        30 ~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~  101 (394)
T PRK11652         30 AIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHS--------LTVLIA  101 (394)
T ss_pred             cHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHHH
Confidence            456677777877766   445556778889999999999999999998888877777666554321        222333


Q ss_pred             HHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308          388 GMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ...+.+.+.+. ..+....+..|.+++++++.+.+..+....++..++|.+.+.+.+..||+..|.+.+++.++..++..
T Consensus       102 ~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK11652        102 ASAIQGLGTGV-GGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMA  180 (394)
T ss_pred             HHHHHHhhhhH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHH
Confidence            33333333322 12344556778888889999999999999999999999999999888999999888777666555555


Q ss_pred             hcccCCC
Q 011308          468 RNVMETK  474 (489)
Q Consensus       468 ~~~~~~~  474 (489)
                      +..||++
T Consensus       181 ~~~~~~~  187 (394)
T PRK11652        181 RWMPETR  187 (394)
T ss_pred             HhCCccC
Confidence            4556643

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.25  E-value=1.1e-10  Score=112.80  Aligned_cols=137  Identities=14%  Similarity=0.025  Sum_probs=102.3

Q ss_pred             cchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHH
Q 011308           71 NETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGR  148 (489)
Q Consensus        71 ~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r  148 (489)
                      ...+|.+.++.|.+.++.  +.+.+.+.++..++.++.|++.||+|||+.+..+.++..+..++....+  +...+.+..
T Consensus       251 ~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (426)
T PRK12307        251 FGLLPTYLAGEGFDTGVV--SNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACL  328 (426)
T ss_pred             HHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence            445677777778776665  8888999999999999999999999999999988877766655444322  222222222


Q ss_pred             HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHH
Q 011308          149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRIC  210 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~  210 (489)
                      +..+.+.....+....++.|.+|+++|++++|+......+|..++|.+.+++.+..+ +...
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g-~~~~  389 (426)
T PRK12307        329 FGLMATNVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMG-LGAA  389 (426)
T ss_pred             HHHHHhcccHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHccc-HHHH
Confidence            223333333345566788999999999999999999999999999999999998877 5543

>PRK10504 putative transporter; Provisional

Probab=99.25  E-value=2.2e-10  Score=112.09  Aligned_cols=160  Identities=14%  Similarity=0.017  Sum_probs=117.7

Q ss_pred             chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .........|.+.++.|.+...   ......++..++.++.|+++||+|||+.+..+..+..++.+...+..        
T Consensus        25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--------   96 (471)
T PRK10504         25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSG--------   96 (471)
T ss_pred             hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhC--------
Confidence            3445556778888888887665   33445567778999999999999999998888777776665544322        


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHH
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCF  460 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~  460 (489)
                      +.+..+....+.+.+.+. ..+....++.|.+|+++++++.|+.+...++|..++|.+.|.+.+..||++.|.+...++.
T Consensus        97 ~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~  175 (471)
T PRK10504         97 TLNELLLARVLQGVGGAM-MVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGI  175 (471)
T ss_pred             CHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHH
Confidence            222334444444444433 2345666788999999999999999999999999999999999999999999988877777


Q ss_pred             HHHHHhhhcccC
Q 011308          461 LAVIYVKRNVME  472 (489)
Q Consensus       461 ~~~~~~~~~~~~  472 (489)
                      +..++.....++
T Consensus       176 l~~~~~~~~~~~  187 (471)
T PRK10504        176 IGAIATLMLMPN  187 (471)
T ss_pred             HHHHHHHHhCCC
Confidence            666655544444

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.23  E-value=5e-10  Score=109.41  Aligned_cols=154  Identities=19%  Similarity=0.226  Sum_probs=119.0

Q ss_pred             hhhhhhcccccccchHHHHHHH-HHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH---hhh-hhHHHHHHHH
Q 011308           74 LESISLDLGFSGSTMAEGLVVS-TCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS---AIT-KNLWGMLLGR  148 (489)
Q Consensus        74 ~~~i~~~~~~~~~~~~~g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r  148 (489)
                      .|.+.+++|.+.++.  |++.. ...++..++.++.|+++||+|+|+.+.++.++.++..+..   +.. ++.+.+.+.-
T Consensus       246 ~~~l~~~~G~s~~~~--g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~~~~~l~~~~  323 (491)
T PRK11010        246 TTFLIRGVGFDAGEV--GLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDKNLYSMGAAV  323 (491)
T ss_pred             HHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            344556788888777  88874 5568999999999999999999998877666555544332   232 3555555566


Q ss_pred             HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcc
Q 011308          149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFC  228 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      +++.++.|...+...++..+..+++.+++..++.+...++|..+++.+.|.+.+..| |+..|.+.++.+++..+...++
T Consensus       324 ~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G-~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        324 FFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHG-WPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHHHHH
Confidence            666666566667778888999999999999999999999999999899999999888 9999999888888776666555


Q ss_pred             cC
Q 011308          229 AE  230 (489)
Q Consensus       229 ~e  230 (489)
                      ++
T Consensus       403 ~~  404 (491)
T PRK11010        403 RQ  404 (491)
T ss_pred             Hh
Confidence            54

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=99.23  E-value=2.5e-10  Score=98.53  Aligned_cols=178  Identities=15%  Similarity=0.119  Sum_probs=133.7

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ||..+..........+ ....++..-|++++.+|++.+|.  ..+.+.-.+|..+ .++.|.+.|++|++.++.+|.+..
T Consensus         1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l~~sq~~l--~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~   76 (250)
T PF06813_consen    1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRLGYSQSQL--NTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLG   76 (250)
T ss_pred             ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHhCCCHHHH--HHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHH
Confidence            3554444444444443 44567777899999999988887  7888899999876 488899999999999999999999


Q ss_pred             HHHHHHHhhh-------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308          129 IIGASMSAIT-------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK  201 (489)
Q Consensus       129 ~i~~~~~~~~-------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  201 (489)
                      .+|..+...+       .++|.+.+..++.|.+.+....+......+.|| ++||++.|+.-...+++..+-..+...+.
T Consensus        77 ~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f  155 (250)
T PF06813_consen   77 FVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFF  155 (250)
T ss_pred             HHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHc
Confidence            9998876542       467888888888888877777777777778887 57999999999999999887777666655


Q ss_pred             cccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308          202 EILGWWRICFWVATIPAAFLALFMEFCAESP  232 (489)
Q Consensus       202 ~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~  232 (489)
                      +... -+..+.+...+.++.++..+++++.|
T Consensus       156 ~~~~-~~fll~la~~~~~v~l~~~~~vr~~~  185 (250)
T PF06813_consen  156 GDDP-SSFLLFLAVLPAVVCLVAMFFVRPVP  185 (250)
T ss_pred             CCCh-HHHHHHHHHHHHHHHHHHhhheeccC
Confidence            5544 45555555555655555555555443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.23  E-value=1.1e-10  Score=112.73  Aligned_cols=159  Identities=12%  Similarity=0.058  Sum_probs=108.7

Q ss_pred             HHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHH
Q 011308          309 FYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLS  385 (489)
Q Consensus       309 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (489)
                      ....|.+.+ .+.+...   ......++..++.++.|+++||++||+.+..+.++.+++.++.......    ..+....
T Consensus        47 ~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l  121 (438)
T TIGR00712        47 ALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAIM  121 (438)
T ss_pred             HhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----cchHHHH
Confidence            333444443 4666655   4455667888999999999999999999888887777776655443211    1112222


Q ss_pred             HHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHH
Q 011308          386 LGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE-QLGPLILYTIFGSFCFLAVI  464 (489)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~  464 (489)
                      .....+.+.+.+... +.....+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.++++++..+
T Consensus       122 ~~~~~l~g~~~g~~~-~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~  200 (438)
T TIGR00712       122 FVLLFLNGWFQGMGW-PPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVAL  200 (438)
T ss_pred             HHHHHHHHHHhhcch-HHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            333334444444333 3344567789999999999999999999999999988876554 46899999998888877666


Q ss_pred             HhhhcccCC
Q 011308          465 YVKRNVMET  473 (489)
Q Consensus       465 ~~~~~~~~~  473 (489)
                      +.++..||+
T Consensus       201 ~~~~~~~~~  209 (438)
T TIGR00712       201 FAFAMMRDT  209 (438)
T ss_pred             HHHHhccCC
Confidence            555555543

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=99.22  E-value=3.7e-10  Score=106.43  Aligned_cols=161  Identities=17%  Similarity=0.236  Sum_probs=121.3

Q ss_pred             ccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh----hH--
Q 011308           68 GVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK----NL--  141 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~----~~--  141 (489)
                      ..+......+-++-|++..+.  -+......+...++.+++..+.||+|||+.++.+..++.+..+++....    ..  
T Consensus       287 ~ai~~Yst~i~~~aG~~~~~a--~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~  364 (485)
T KOG0569|consen  287 NAIFFYSTSIFKTAGFTPEEA--QYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGS  364 (485)
T ss_pred             ceeHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            345555667788888888777  6888888888899999999999999999999999999988888776532    11  


Q ss_pred             H---HHHHHHHHHhhcccc-hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHH
Q 011308          142 W---GMLLGRLFVGTGMGI-GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIP  217 (489)
Q Consensus       142 ~---~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~  217 (489)
                      |   ..+++.++..++.+. ..|...-+.+|.+|++.|..++++......+...+-...-..+.+..|  .+.|++..++
T Consensus       365 ~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--~~~filF~i~  442 (485)
T KOG0569|consen  365 WLSYLCIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--PYVFILFVIP  442 (485)
T ss_pred             HHHHHHHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--chhhHHHHHH
Confidence            1   123334333333222 347778899999999999999999999888888877777777777777  3777777787


Q ss_pred             HHHHHHHh-hcccCCh
Q 011308          218 AAFLALFM-EFCAESP  232 (489)
Q Consensus       218 ~~~~~~~~-~~~~e~~  232 (489)
                      +++..+.. ..+||+.
T Consensus       443 ~~~~~i~~~~~lPETk  458 (485)
T KOG0569|consen  443 LAIFLIYLYRYLPETK  458 (485)
T ss_pred             HHHHHHHHHHhCcccC
Confidence            77776654 4589984

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.22  E-value=2.3e-10  Score=108.59  Aligned_cols=155  Identities=20%  Similarity=0.174  Sum_probs=116.3

Q ss_pred             HhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308          310 YFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ..+|.+.++.+.+...   ......++..++.++.|++.||+|||+.+..+.++..++...+.+...        .+..+
T Consensus        12 p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~--------~~~~~   83 (377)
T PRK11102         12 PALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQT--------IDQLI   83 (377)
T ss_pred             ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHcc--------HHHHH
Confidence            4456666777777665   445566778899999999999999999999988888888777665432        12233


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 011308          387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ....+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..|.+.+.++++..++.
T Consensus        84 ~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  162 (377)
T PRK11102         84 YMRFLHGLAAAA-ASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALV  162 (377)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence            333444443332 2344556788999999999999999999999999999999999999999999988888887776666


Q ss_pred             hhcccCC
Q 011308          467 KRNVMET  473 (489)
Q Consensus       467 ~~~~~~~  473 (489)
                      .+..+|+
T Consensus       163 ~~~~~~~  169 (377)
T PRK11102        163 FFFIPET  169 (377)
T ss_pred             HHhCCcc
Confidence            5555554

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.22  E-value=4.9e-10  Score=105.90  Aligned_cols=159  Identities=16%  Similarity=0.073  Sum_probs=107.7

Q ss_pred             chhHHHHhHHH-HHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          304 GINAVFYFSST-VFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       304 ~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      .......+.|. +.++.+.+...   ......++..++.++.|+++||+|||+.+..+.++..++.+++.+...      
T Consensus        16 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~------   89 (366)
T TIGR00886        16 VWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ------   89 (366)
T ss_pred             HHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh------
Confidence            34445555664 55667777655   455566788899999999999999999999998888888777665531      


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hccc
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ----------LGPL  449 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~----------~g~~  449 (489)
                       +.+..+....+.+.+.  +..+....++.|.+|+++|+++.++.....++|..+++.+.+.+.+.          .+|+
T Consensus        90 -~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~  166 (366)
T TIGR00886        90 -SYSVLLLLRLFIGIAG--GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWG  166 (366)
T ss_pred             -hHHHHHHHHHHHHHhc--hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence             1222333334444332  22234456788999999999999999988888888888888776653          3678


Q ss_pred             hhh-HHHHHHHHHHHHHhhhccc
Q 011308          450 ILY-TIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       450 ~~~-~~~~~~~~~~~~~~~~~~~  471 (489)
                      +.| ...+++..+..++.+...+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~  189 (366)
T TIGR00886       167 WAFVIVPAGILLLPALLIFFVGA  189 (366)
T ss_pred             chhHHHHHHHHHHHHHHHHHhcc
Confidence            777 4445444444444333333

>TIGR00898 2A0119 cation transport protein

Probab=99.21  E-value=8e-11  Score=116.32  Aligned_cols=138  Identities=14%  Similarity=0.048  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhH--HHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308           92 LVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNL--WGMLLGRLFVGTGMGIGPAVAALYVSEV  169 (489)
Q Consensus        92 ~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (489)
                      +......+....+.++.+++.||+|||+++..+.++.+++.++..+.++.  +...+.-++.+++.+..++....+..|.
T Consensus       359 ~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~  438 (505)
T TIGR00898       359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAEL  438 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            33445566777888999999999999999999999999888887776544  4455556677777777788889999999


Q ss_pred             CCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308          170 SPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP  232 (489)
Q Consensus       170 ~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~  232 (489)
                      +|.+.|+.++++.+....+|.+++|.+.+ +. ..+ +..++++.++..++..+..+++||+.
T Consensus       439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-~~~-~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-LG-EKW-LFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-HHH-HhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            99999999999999999999999999988 43 334 67788888877777777777788864

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.21  E-value=1.6e-10  Score=110.59  Aligned_cols=155  Identities=15%  Similarity=0.064  Sum_probs=106.2

Q ss_pred             hhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          305 INAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       305 ~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      +..+..+++.++.+ .|.+...   ..........++.+++|+++||+ |||+.+..+.++..++.+++.....      
T Consensus        25 ~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~------   98 (493)
T PRK15462         25 FYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEI------   98 (493)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhc------
Confidence            33344455555443 5666555   34444566678889999999998 9999999999888888765543211      


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGS  457 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  457 (489)
                       ..........+...+.+. ..+...+++.|.+|++  +|+++.++.+...++|+.++|.+.+++.+..||+..|.+.++
T Consensus        99 -~~~~~~l~l~li~iG~G~-~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaai  176 (493)
T PRK15462         99 -HPSFLYLSLAIIVCGYGL-FKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAV  176 (493)
T ss_pred             -chhHHHHHHHHHHHhccc-ccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHH
Confidence             011122222233333322 2355566889999875  699999999999999999999999999999999999988766


Q ss_pred             HHHHHHHHhh
Q 011308          458 FCFLAVIYVK  467 (489)
Q Consensus       458 ~~~~~~~~~~  467 (489)
                      ..+++.+...
T Consensus       177 gm~l~li~~~  186 (493)
T PRK15462        177 GMIAGLVIFL  186 (493)
T ss_pred             HHHHHHHHHH
Confidence            5555544433

>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]

Probab=99.20  E-value=2.6e-11  Score=110.26  Aligned_cols=185  Identities=10%  Similarity=-0.008  Sum_probs=139.0

Q ss_pred             cchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHH
Q 011308          288 GVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIA  364 (489)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~  364 (489)
                      +.......+....+..--..++...+..-+..+.+..   .......+...+.+++.|++.||+.|++++..|..+-.++
T Consensus        32 ~~~l~il~~vnlmny~Dr~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~A  111 (493)
T KOG1330|consen   32 TLTLVILCLVNLMNYADRYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLA  111 (493)
T ss_pred             hHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHH
Confidence            3344444444554444444455545555455555443   3777788899999999999999999999999999988888


Q ss_pred             HHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          365 MGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      .+...+....        |.++++-.+.+.+-. ...|+...+++|.+|.++|++++++.++...+|..+|-.+.+.+.+
T Consensus       112 v~~~~fs~~F--------wq~~l~R~~vGiGeA-s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~  182 (493)
T KOG1330|consen  112 VFASGFSNHF--------WQVLLCRGFVGIGEA-SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVAS  182 (493)
T ss_pred             HHHHHHHHHH--------HHHHHHHHHhccchh-hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeecc
Confidence            8887776432        334444555555543 3457778899999999999999999999999999999888888887


Q ss_pred             Hhc-cchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHH
Q 011308          445 QLG-PLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEI  481 (489)
Q Consensus       445 ~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (489)
                      ..+ |++.|...+++.++..++..++.+|++++..+|.
T Consensus       183 ~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~  220 (493)
T KOG1330|consen  183 LTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEV  220 (493)
T ss_pred             CccceEEEEEeehHHHHHHHHHHHhhccCccccccccc
Confidence            776 9999999999999999988888888776544443

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.19  E-value=8.7e-09  Score=96.29  Aligned_cols=315  Identities=13%  Similarity=0.042  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc
Q 011308           94 VSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY  173 (489)
Q Consensus        94 ~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~  173 (489)
                      .++-...+.+++++.+.+.|+.|+|..++++........+..-+- |-+-++++-.+.|+|.+..+..--.+++|..+++
T Consensus        56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~-N~y~~yfssallG~Gaallw~GqG~ylt~~st~~  134 (461)
T KOG3098|consen   56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP-NSYYLYFSSALLGFGAALLWTGQGGYLTSNSTRE  134 (461)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc-chHHHHHHHHHhhhhHHheecccceehhhcCChh
Confidence            677778888999999999999999999999999998887777664 4566778999999999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhcccccccch-------H-HHHH-------------HHhHHHHHHHHHHhhcccCCh
Q 011308          174 VRGAYGSSTQIAACLGILVALFVGLPAKEILGW-------W-RICF-------------WVATIPAAFLALFMEFCAESP  232 (489)
Q Consensus       174 ~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-------W-r~~f-------------~~~~~~~~~~~~~~~~~~e~~  232 (489)
                      .+.+-.++..+....+.++|..+-..+......       - ++.+             .+...+..+..+...+.|.+.
T Consensus       135 tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~~  214 (461)
T KOG3098|consen  135 TIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSKD  214 (461)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCccc
Confidence            999999999888888888887665544322110       1 1111             111111111111122222211


Q ss_pred             hHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhH
Q 011308          233 HWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFS  312 (489)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (489)
                      . ...+                          +..+....+......+++++++...+....+..++..   ..+...|-
T Consensus       215 ~-~~~~--------------------------~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~---Sf~~~iyp  264 (461)
T KOG3098|consen  215 V-VNCK--------------------------SSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLET---SFWISIYP  264 (461)
T ss_pred             h-hhhh--------------------------hhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH---HHHHhccc
Confidence            0 0000                          0000011111122333444444443333333322211   11222221


Q ss_pred             HHHHH--hcCCCCCc----hhHHHHHHHHHHHHHHHHHHhh---hCCchhHHHHHHHHHHHHHHHHHHhhcccC--C---
Q 011308          313 STVFK--NAGVPSDS----GNICVGIANLSGSIIAMILMDK---LGRRVLLLGSFLGMAIAMGVQAIAATSFVS--S---  378 (489)
Q Consensus       313 ~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---  378 (489)
                      ..+.-  ..+.+...    .....+++.+++....+.+.+|   +|+++.+..+..+..+..++.........+  +   
T Consensus       265 t~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~  344 (461)
T KOG3098|consen  265 TCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDS  344 (461)
T ss_pred             hhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcc
Confidence            11111  12233322    3344456666777777777765   567888877777766666555443322211  0   


Q ss_pred             -----CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          379 -----SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR  441 (489)
Q Consensus       379 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~  441 (489)
                           .+......+...+.+.+- .......+.++.+.+| +.|.++.++..+-..++..++-...+.
T Consensus       345 ~~~~~~~~~~~~~ii~~l~G~~D-~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  345 PPLLFTPSYYLALIIGFLLGFGD-ACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             cccccccchhHHHHHHHHHhhHH-HHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence                 011222333333333333 2344556667888886 668889888888888877766655543

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=99.19  E-value=2.2e-10  Score=109.16  Aligned_cols=149  Identities=16%  Similarity=0.054  Sum_probs=113.8

Q ss_pred             hhhhhhhcccccccchHHHHHHHHHH-HHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh------hhhHHHHH
Q 011308           73 TLESISLDLGFSGSTMAEGLVVSTCL-GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI------TKNLWGML  145 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~------~~~~~~l~  145 (489)
                      ..+.+.+|.|++.++.  |++..... ....++.++.|++.||+|+|+.+..+..+.++..+....      .++...+.
T Consensus       230 ~~~~~l~~~G~s~~~i--g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (390)
T TIGR02718       230 LSKLYLVDAGWPLEWI--GRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAW  307 (390)
T ss_pred             HhhHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHH
Confidence            4455667789888877  88888776 466677899999999999999998887666443333221      12333444


Q ss_pred             HHHHHHhhcccchhhhHHHHHHhcCCc-cchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          146 LGRLFVGTGMGIGPAVAALYVSEVSPA-YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      ....+.+++.+...+.....+.+..++ +++++.+++.+...++|..++|.++|.+.+..| |+..|++.++..++..+.
T Consensus       308 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G-~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       308 SCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFG-YAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cHHHHHHHHHHHHHHHHH
Confidence            555666777777778888887777776 789999999999999999999999999999888 899999887766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11043 putative transporter; Provisional

Probab=99.19  E-value=7.8e-10  Score=105.86  Aligned_cols=151  Identities=13%  Similarity=0.086  Sum_probs=108.4

Q ss_pred             HHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHH
Q 011308          312 SSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGG  388 (489)
Q Consensus       312 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (489)
                      .+.+.++.+.+...   ......++..++.++.|+++||++||+.+..+..+..++.+...+..+        .+..+..
T Consensus        29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--------~~~l~~~  100 (401)
T PRK11043         29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVES--------AAQLLVL  100 (401)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHH
Confidence            35556677776665   444556777899999999999999999998888777776666554322        2223333


Q ss_pred             HHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          389 MLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ..+.+.+.+.. .+....++.|.+|+++++...+..+....++..++|.+.+.+.+..||+..|.+.+++.++..++.+.
T Consensus       101 ~~l~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~  179 (401)
T PRK11043        101 RFVQAVGVCSA-AVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR  179 (401)
T ss_pred             HHHHHhhhHHH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH
Confidence            33333332221 22344567888998889999999999999999999999999999999999998888877776665554


Q ss_pred             ccc
Q 011308          469 NVM  471 (489)
Q Consensus       469 ~~~  471 (489)
                      ..+
T Consensus       180 ~~~  182 (401)
T PRK11043        180 LKP  182 (401)
T ss_pred             cCC
Confidence            433

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.18  E-value=3.9e-10  Score=90.27  Aligned_cols=135  Identities=18%  Similarity=0.175  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhh
Q 011308          329 CVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLL  408 (489)
Q Consensus       329 ~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  408 (489)
                      ...++.+++.+..+++.||++||+.+..+.....++.+......        +.+.......+.+.+.+. ..+....+.
T Consensus         6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~-~~~~~~~~~   76 (141)
T TIGR00880         6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--------NITVLIIARFLQGFGAAF-ALVAGAALI   76 (141)
T ss_pred             eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHH-HHHhHHHHH
Confidence            34677888999999999999999998888777776666554432        122233334444444332 234566688


Q ss_pred             cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308          409 SEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       409 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      .|..|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+.+.+++.+..++..||
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (141)
T TIGR00880        77 ADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE  140 (141)
T ss_pred             HHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            8999999999999999999999999999999999988888888888888877777666655544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.17  E-value=9.6e-10  Score=104.53  Aligned_cols=170  Identities=13%  Similarity=0.057  Sum_probs=111.5

Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM  361 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (489)
                      |+++......++..+.    ........+....+.+.+...   ......+...+..++.|++.||++||+++..+..+.
T Consensus         3 ~~f~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~   78 (393)
T PRK11195          3 KGFYAIMAAQFFSALA----DNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIK   78 (393)
T ss_pred             CcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHH
Confidence            4455555554444432    222333334445555555443   445566788889999999999999999999998888


Q ss_pred             HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR  441 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~  441 (489)
                      .++.+.+.+...           .+....+.+.+. ....|...+++.|.+|+++|++++|+.+....++..+||.++|.
T Consensus        79 ~~~~~~~~~~~~-----------~~~~r~l~G~~~-a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~  146 (393)
T PRK11195         79 LLGCLLMLFGIH-----------PLLAYGLVGIGA-AAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGA  146 (393)
T ss_pred             HHHHHHHHHHHH-----------HHHHHHHHHHHH-HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776665544321           122222333333 23456777889999999999999999999999999999999999


Q ss_pred             HHHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308          442 LLEQLGPLILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       442 l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      +.+.. +...+.+.+.+.+++.+ ..+..||
T Consensus       147 l~~~~-~~~~~~i~~~~~~~~~~-~~~~l~~  175 (393)
T PRK11195        147 LADPH-AEAALAVCALIYLLAAL-FNLFIPR  175 (393)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHH-HHhcCCC
Confidence            98864 55555555544444333 3334444

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.17  E-value=8.8e-10  Score=107.10  Aligned_cols=154  Identities=9%  Similarity=0.033  Sum_probs=110.2

Q ss_pred             chhHHHHhHHHHHHh---cCCCCCc---hhHHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 011308          304 GINAVFYFSSTVFKN---AGVPSDS---GNICVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFV  376 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      .+.....+++.++.+   .|.+...   ......++..++.+++|+++|| +|||+.+..+.++.+++.+++.+...   
T Consensus        25 ~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~---  101 (475)
T TIGR00924        25 SYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIY---  101 (475)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhccc---
Confidence            344455556666554   4665544   4555667888999999999999 89999999999988888777665321   


Q ss_pred             CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhH
Q 011308          377 SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR---IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYT  453 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~  453 (489)
                           .+.......+.+.+.+ ...+...+++.|.+|++   +|+++.++.+...++|..++|.+.+.+.++.||+..|.
T Consensus       102 -----~~~~~~~~~l~g~g~g-~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~  175 (475)
T TIGR00924       102 -----PDLIFYGLGTIAVGSG-LFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFN  175 (475)
T ss_pred             -----HhHHHHHHHHHHhccc-cccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence                 1222333333333332 23456666788888764   48889999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHh
Q 011308          454 IFGSFCFLAVIYV  466 (489)
Q Consensus       454 ~~~~~~~~~~~~~  466 (489)
                      +.++.++++.+..
T Consensus       176 ~~~~~~~~~~l~~  188 (475)
T TIGR00924       176 LAAVGMVIGLLTF  188 (475)
T ss_pred             HHHHHHHHHHHHH
Confidence            8776655554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00896 CynX cyanate transporter

Probab=99.16  E-value=2.4e-10  Score=107.46  Aligned_cols=136  Identities=17%  Similarity=0.096  Sum_probs=107.0

Q ss_pred             ccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-CchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308           70 VNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-GRRRAFQLCALPMIIGASMSAITKNLWGMLLGR  148 (489)
Q Consensus        70 ~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (489)
                      ....+|.+.++.|.+..+.  +.+.+.+.++..+++++.|++.||+ +||+.+..+.++.+++.+...+.++..... .-
T Consensus       216 ~~~~lp~~~~~~g~~~~~~--g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  292 (355)
T TIGR00896       216 LIGWLPAILISHGASAATA--GSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WA  292 (355)
T ss_pred             HHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HH
Confidence            3445677777888877666  8999999999999999999999999 566677778788887777666655433322 45


Q ss_pred             HHHhhcccchhhhHHHHHHhcCC-ccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308          149 LFVGTGMGIGPAVAALYVSEVSP-AYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR  208 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr  208 (489)
                      ++.|++.+...+.....+.+..+ +++++...++.+....+|..++|.+.+.+.++.+.|.
T Consensus       293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g~~~  353 (355)
T TIGR00896       293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISGNWL  353 (355)
T ss_pred             HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence            68899999988887777766554 5667888899888888899999999999998776554

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.16  E-value=4.3e-10  Score=108.61  Aligned_cols=135  Identities=20%  Similarity=0.104  Sum_probs=97.5

Q ss_pred             cccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH-H---hhhhhHHH
Q 011308           69 VVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM-S---AITKNLWG  143 (489)
Q Consensus        69 ~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~-~---~~~~~~~~  143 (489)
                      ......|.+.++ +|.+.++.  ++....+.++..++.+++|+++||+|||+++..+..+..+.... .   ...+++..
T Consensus       256 ~~~~~~p~~l~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (434)
T PRK15075        256 LITVYTPTFGKTVLHLSAADS--LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFAR  333 (434)
T ss_pred             HHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            344556766554 78877665  78888888999999999999999999999988765544332211 1   12234444


Q ss_pred             HHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHH-HHHHHHHHHHHhhcccccccc
Q 011308          144 MLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQI-AACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~-~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      +.+..++.|++.+...+....++.|.+|+++|+...++... +..++..++|.+.+++.+..+
T Consensus       334 ~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g  396 (434)
T PRK15075        334 MLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG  396 (434)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence            44455666666666666677889999999999999998544 444557789999999988777

>TIGR01272 gluP glucose/galactose transporter

Probab=99.15  E-value=5.6e-10  Score=101.97  Aligned_cols=159  Identities=14%  Similarity=0.101  Sum_probs=118.4

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhc---ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLD---LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      .....+..++............+.+.+|   +|.++++.  ++..+.+..++.++.+..+++.||+|+||++.++..+..
T Consensus       142 ~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a--~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~  219 (310)
T TIGR01272       142 LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQA--AHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAV  219 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            3334444455443444444455555543   57777776  899999999999999999999999999999998888888


Q ss_pred             HHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          130 IGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       130 i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                      ++.++....++... ..+-++.|++.+..+|...+...+..|++ .+.+.++. ....+|..+.|.+.|.+.+..+ .+.
T Consensus       220 ~~~~l~~~~~~~~~-~~~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g-~~~  295 (310)
T TIGR01272       220 LLSIGAALTHGYVA-MWFVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLG-IQL  295 (310)
T ss_pred             HHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhcc-chH
Confidence            87766665554333 34556889999999999999999888654 45666665 4566899999999999999888 788


Q ss_pred             HHHHhHHH
Q 011308          210 CFWVATIP  217 (489)
Q Consensus       210 ~f~~~~~~  217 (489)
                      .|++..+.
T Consensus       296 a~~v~~~~  303 (310)
T TIGR01272       296 AFALPVPC  303 (310)
T ss_pred             HHHHHHHH
Confidence            88754433

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.15  E-value=4.4e-10  Score=108.98  Aligned_cols=115  Identities=19%  Similarity=0.196  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh-hhHHHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT-KNLWGMLLGRLFVGTGMGIGPAVAALYVSEV  169 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (489)
                      +++.+...++..++.+++++++||+|+|+++..+.++.+++.++..+. ++.+.+++..++.|++.+...+...++++|.
T Consensus       260 ~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  339 (437)
T TIGR00792       260 SYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALVADT  339 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            778888899999999999999999999999999998888887777664 4667777888899999999889999999988


Q ss_pred             CC-------ccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          170 SP-------AYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       170 ~~-------~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      .+       ++++|...++.+....+|..+++.+.+.+.+..|
T Consensus       340 ~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G  382 (437)
T TIGR00792       340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG  382 (437)
T ss_pred             hhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            65       4567999999999999999999999988876554

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.15  E-value=4.3e-10  Score=109.96  Aligned_cols=151  Identities=17%  Similarity=0.128  Sum_probs=99.8

Q ss_pred             hhHHHHhHHHHH-HhcCCCCCchhHH---HHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          305 INAVFYFSSTVF-KNAGVPSDSGNIC---VGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       305 ~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      +.....+++.++ ++.|.+.......   .........+++|+++|| +|||+.+..+.++..++..++.+...      
T Consensus        37 ~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~------  110 (500)
T PRK09584         37 YYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGH------  110 (500)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcc------
Confidence            334444555554 4567765542222   222333444689999999 59999999998888888766654321      


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHH
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGS  457 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~  457 (489)
                       ..........+.+.+.+. ..+...+++.|.+|++  +++.+.++.+...++|..++|.+.|++.+..||+..|.+.++
T Consensus       111 -~~~~l~~~~~l~gig~g~-~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i  188 (500)
T PRK09584        111 -DAGIVYMGMATIAVGNGL-FKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVV  188 (500)
T ss_pred             -cHHHHHHHHHHHHHhhhc-ccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence             112223333344444332 3355556788988754  355688999999999999999999999999999999988776


Q ss_pred             HHHHHH
Q 011308          458 FCFLAV  463 (489)
Q Consensus       458 ~~~~~~  463 (489)
                      ..+++.
T Consensus       189 ~~~i~~  194 (500)
T PRK09584        189 GMLITV  194 (500)
T ss_pred             HHHHHH
Confidence            545443

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=99.14  E-value=3.6e-10  Score=102.11  Aligned_cols=152  Identities=16%  Similarity=0.198  Sum_probs=133.9

Q ss_pred             hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccc
Q 011308           78 SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGI  157 (489)
Q Consensus        78 ~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~  157 (489)
                      +.++|++..+.  .++.-...+..+++++++|++.||+|.|+++..++++..+.++..-+...-..+.++-.+.|...|+
T Consensus       280 ~~~~gls~~~l--ll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~  357 (438)
T COG2270         280 AADLGLSSTEL--LLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGG  357 (438)
T ss_pred             HHHcCccHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcch
Confidence            44899988877  7888888899999999999999999999999999999999988888777777777888899999999


Q ss_pred             hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCC
Q 011308          158 GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAES  231 (489)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~  231 (489)
                      ......++..+..|+++-++.+|+++...-.+..+||.+-+.+.+..+.-|..+....++..+.++....+|++
T Consensus       358 ~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~  431 (438)
T COG2270         358 AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP  431 (438)
T ss_pred             HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence            99999999999999999999999999999999999999999999888767887777777766666666666654

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.14  E-value=1.3e-09  Score=105.88  Aligned_cols=139  Identities=14%  Similarity=0.106  Sum_probs=98.1

Q ss_pred             HHhcCCCCCchh---HHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHH
Q 011308          316 FKNAGVPSDSGN---ICVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLL  391 (489)
Q Consensus       316 ~~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (489)
                      .++.+.+.....   ..+.....+..+++|+++|| +|||+.+..+.++..++.+.+.+....       ....++...+
T Consensus        42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~-------~~ll~~~~~l  114 (489)
T PRK10207         42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLK-------PDLIFIALGT  114 (489)
T ss_pred             HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccc-------hhHHHHHHHH
Confidence            344666655533   23334455666789999999 999999999999999988777754321       1112223333


Q ss_pred             HHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q 011308          392 FVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLA  462 (489)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~  462 (489)
                      .+.+.+ ...|...+++.|.+|++  +|+.++++.....++|..++|.+.|++.++.||++.|++.++..+++
T Consensus       115 ~~ig~g-~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~  186 (489)
T PRK10207        115 IAVGNG-LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGLIIA  186 (489)
T ss_pred             HHhccc-cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence            333333 23456667899999876  45889999999999999999999999999999999998865433333

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.11  E-value=9.1e-10  Score=106.29  Aligned_cols=157  Identities=15%  Similarity=0.085  Sum_probs=98.6

Q ss_pred             ccchhhhhh-hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh--h--hhhHHHH
Q 011308           70 VNETLESIS-LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA--I--TKNLWGM  144 (489)
Q Consensus        70 ~~~~~~~i~-~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l  144 (489)
                      +...+|.+. +++|.+.++.  ++..+...++..+++++.|+++||+|||+++..+.++.++......  .  .++....
T Consensus       262 ~~~~lp~~l~~~~g~s~~~~--~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (432)
T PRK10406        262 FTTYMQKYLVNTAGMHANVA--SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA  339 (432)
T ss_pred             HHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence            334456554 5678776655  7888888888889999999999999999988776655443332111  1  1222222


Q ss_pred             HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhcccccccchHHHHHHHhHHHHHHHHH
Q 011308          145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKEILGWWRICFWVATIPAAFLAL  223 (489)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~  223 (489)
                      +..-.+.+++.+...+....++.|++|++.|+.+.|+.+....+ .....|.+.+.+. ..++|...++..++..++..+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~-~~g~~~~~~~~~~~~~~i~~~  418 (432)
T PRK10406        340 FGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLK-SIGMETAFFWYVTLMAVVAFL  418 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHH-HhCCCcHHHHHHHHHHHHHHH
Confidence            22222222333334455667889999999999999998765443 3344777777553 344366666666666655555


Q ss_pred             Hhhccc
Q 011308          224 FMEFCA  229 (489)
Q Consensus       224 ~~~~~~  229 (489)
                      ..++++
T Consensus       419 ~~~~l~  424 (432)
T PRK10406        419 VSLMLH  424 (432)
T ss_pred             HHHHhh
Confidence            544443

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.09  E-value=9.7e-10  Score=107.32  Aligned_cols=140  Identities=12%  Similarity=-0.003  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      ....+.++..++.+..|++.||+|+|+.+..+.++..++.++..+....      .....++.-++.+.+.+ ...+...
T Consensus        81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~------~~~~l~~~r~~~G~~~~-~~~~~~~  153 (465)
T TIGR00894        81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGG------GIALVVFCRVIQGLAQG-SVSPATH  153 (465)
T ss_pred             HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHc------CchHHHHHHHHHHHhcc-cchhhHH
Confidence            4555667888999999999999999999988887777666554433211      11223333334443333 3445666


Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHhhhcccC
Q 011308          406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL-GPLILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      .++.|.+|+++|++++|+.+....+|..+++.+.+.+.+.. ||+..|.+.+++.++..++.+...++
T Consensus       154 ~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       154 KIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            78999999999999999999999999999999999999884 99999999888877766655554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.08  E-value=1.2e-08  Score=96.80  Aligned_cols=164  Identities=12%  Similarity=-0.021  Sum_probs=104.5

Q ss_pred             hhHHHHhHHHHHH-hcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          305 INAVFYFSSTVFK-NAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       305 ~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      ........+.+.+ +.+++...   ...+..+.+.+.++..|++.||+|.|++...+.++..+..+...+.....   .+
T Consensus        50 w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~---~~  126 (462)
T PRK15034         50 WMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNP---NT  126 (462)
T ss_pred             HHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHccc---CC
Confidence            3333333444433 57777666   34445567778888899999999999999888888877777666542110   12


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHh---------
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL-----EQL---------  446 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~-----~~~---------  446 (489)
                      +.+..++...+.+.+ + +..+.....+++.+|+++||+++|+....+++|..+++.+.+.+.     +..         
T Consensus       127 s~~~lli~r~l~Gig-g-~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~  204 (462)
T PRK15034        127 PFGIFIVIALLCGFA-G-ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQAD  204 (462)
T ss_pred             CHHHHHHHHHHHHHH-H-HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence            233344444444443 2 233455667889999999999999998777777776666655433     322         


Q ss_pred             ----ccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          447 ----GPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       447 ----g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                          +++....+.+.+.++..++.++..++.
T Consensus       205 g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~  235 (462)
T PRK15034        205 GSVMSLANAAWIWVPLLAIATIAAWSGMNDI  235 (462)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence                345555666676666666666555443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.07  E-value=7.1e-09  Score=98.90  Aligned_cols=155  Identities=12%  Similarity=0.055  Sum_probs=111.5

Q ss_pred             hHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcch
Q 011308          306 NAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGAL  382 (489)
Q Consensus       306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (489)
                      .......|.+.++.+.+...   ......++..++++..|++.||+|||+.+..+..+.+++.+++.....     ..+.
T Consensus        20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~-----~~~~   94 (410)
T TIGR00885        20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE-----IMNY   94 (410)
T ss_pred             HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh-----hccH
Confidence            44445667777777777655   555667888999999999999999999999999988888766543321     1122


Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE------------------  444 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------------------  444 (489)
                      +..+....+.+.+.+.... ....++.+..|++++++..++.+...++|..++|.+.+.+..                  
T Consensus        95 ~~~l~~~~l~G~g~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~  173 (410)
T TIGR00885        95 TLFLVGLFILTAGLGFLET-AANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEE  173 (410)
T ss_pred             HHHHHHHHHHHhhHHHHHh-hhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHH
Confidence            3344444455555444332 334467788898999999999999999999999999887753                  


Q ss_pred             --------HhccchhhHHHHHHHHHHHHHh
Q 011308          445 --------QLGPLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       445 --------~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                              ..+|+.+|.+.+++.++..++.
T Consensus       174 ~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       174 LSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                    2358888888888766655444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=99.05  E-value=2.5e-09  Score=100.68  Aligned_cols=171  Identities=19%  Similarity=0.266  Sum_probs=130.5

Q ss_pred             HHhhhhccccccccchhhhhhhccc-ccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh
Q 011308           58 ISSFLFGYHLGVVNETLESISLDLG-FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA  136 (489)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~  136 (489)
                      +..++.+.....+....+.+.+|.| .+.+..  |.+.+...++-.+.-...+++..|+|.|+++.++.+.+++=..+.+
T Consensus       214 l~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~--g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a  291 (400)
T PF03825_consen  214 LAAFLIGISHAAYYTFFSIYLQELGGYSGSTI--GILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA  291 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccchhhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            3344555555566666777778877 555544  6777777777788888999999999999999999999999888888


Q ss_pred             hh-hhHHHHHH----HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHH-HHHHHHHHHHhhcccccccch----
Q 011308          137 IT-KNLWGMLL----GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIA-ACLGILVALFVGLPAKEILGW----  206 (489)
Q Consensus       137 ~~-~~~~~l~~----~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~~~~~l~~~~~~----  206 (489)
                      .. ++.+...+    ...++|+..+....+...++.+..|++.|+++.++++.. .++|..+|..++|++.+..+.    
T Consensus       292 ~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~  371 (400)
T PF03825_consen  292 YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMF  371 (400)
T ss_pred             HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhh
Confidence            77 55444333    356799999999999999999999999999999998774 689999999999999987662    


Q ss_pred             -HHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308          207 -WRICFWVATIPAAFLALFMEF-CAE  230 (489)
Q Consensus       207 -Wr~~f~~~~~~~~~~~~~~~~-~~e  230 (489)
                       |...+.+.+...++..+++.+ .+|
T Consensus       372 ~~~~~~~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  372 DWSAVFLVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccC
Confidence             445556666555555444333 444

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=99.04  E-value=3.5e-08  Score=87.52  Aligned_cols=361  Identities=13%  Similarity=0.083  Sum_probs=191.0

Q ss_pred             chhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-----ccCchhHhh
Q 011308           48 RSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD-----GIGRRRAFQ  122 (489)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~  122 (489)
                      .....+..+.+.+.+.+.-.+... .+|.+.+.-|.|.++.  +. .+....-+ .--++|.++.|     |+||||..+
T Consensus        28 ~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak~vSyt~~--a~-fS~ay~P~-sLKllWaPiVDs~y~k~~GrrksWv  102 (510)
T KOG3574|consen   28 GDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAKGVSYTSQ--AI-FSFAYWPF-SLKLLWAPIVDSVYSKRFGRRKSWV  102 (510)
T ss_pred             hhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCCCcchhhh--hh-hhhhhhHH-HHHHHHHhhhHHHHHHhhcccccee
Confidence            334456667777888888888888 8999988778887766  32 22222222 33578999999     999998754


Q ss_pred             h-hhHHHHHHHHHHhh-----------hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHH
Q 011308          123 L-CALPMIIGASMSAI-----------TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGI  190 (489)
Q Consensus       123 ~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~  190 (489)
                      + +..+.+....+.+.           .++...+...-++.-+..+.--.+.-.+.-.+..+++-|-+......+...|.
T Consensus       103 vp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~q~Vg~~~Gy  182 (510)
T KOG3574|consen  103 VPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTCQSVGQTAGY  182 (510)
T ss_pred             eehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHHHHHHHhhhH
Confidence            3 33444443333332           23333444455566666666667777788888889999999888888888888


Q ss_pred             HHHHHhhccccc-------ccchHH---------HHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCC
Q 011308          191 LVALFVGLPAKE-------ILGWWR---------ICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGG  254 (489)
Q Consensus       191 ~i~~~~~~~l~~-------~~~~Wr---------~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  254 (489)
                      .++..+--.+.+       ..+ |.         -..+..+...++...++.+..+++..        +           
T Consensus       183 fL~~~ifLaL~s~dF~N~y~rs-~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~--------~-----------  242 (510)
T KOG3574|consen  183 FLGNVVFLALESPDFCNTYLRS-IPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDE--------S-----------  242 (510)
T ss_pred             HhhcceeeEecChhhhhHHHhc-CcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCch--------h-----------
Confidence            887766544433       011 11         11222233333333333333332210        0           


Q ss_pred             CCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHH
Q 011308          255 LHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIAN  334 (489)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (489)
                              ..++.+....+....++++++-+..+.........=.    ++.......+.-+-+.|++......+. +..
T Consensus       243 --------~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~----gf~a~da~t~LkLle~Gv~ke~Lal~~-v~~  309 (510)
T KOG3574|consen  243 --------VDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKL----GFQAADALTSLKLLEHGVPKEELALIA-VPL  309 (510)
T ss_pred             --------hhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHH----HhhhhhhccchHHHHcCCChhHheeee-eeh
Confidence                    0001111112222345666766665544333332222    122222222333445677665533222 455


Q ss_pred             HHHHHHHHHHHhhhC--CchhHH------HHHHHHHHHHHHHHHHhhcccCCCcch--hHHHHHH--HHHHHHHhcCCCc
Q 011308          335 LSGSIIAMILMDKLG--RRVLLL------GSFLGMAIAMGVQAIAATSFVSSSGAL--SLSLGGM--LLFVLTFSLGAGP  402 (489)
Q Consensus       335 ~~~~~~~g~l~d~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~~~~~~~~~  402 (489)
                      ++..+..++...|+.  +|++..      .-.....+...+....+. ....+...  ...++.+  -.+..++......
T Consensus       310 ~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~~~~-~~~~~G~~~~~~~il~i~~y~~~~~~~ts~fv  388 (510)
T KOG3574|consen  310 VPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWWTPT-LGHSDGTFPRGYYILLITSYAFHQVFVTSMFV  388 (510)
T ss_pred             hhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhhhcc-cccCCCceeechHHHHHHHHHHhhhHHHHHHH
Confidence            555565666555542  232211      111122222222222222 21111111  1111111  1111121111222


Q ss_pred             chhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          403 VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      ..++..+.+.++...|+.+.+.|+..++|+-.-..+..++.|..+
T Consensus       389 ~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt  433 (510)
T KOG3574|consen  389 SGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT  433 (510)
T ss_pred             HHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence            334567888999999999999999999999988888888887544

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.04  E-value=2.1e-09  Score=117.23  Aligned_cols=144  Identities=14%  Similarity=0.142  Sum_probs=120.1

Q ss_pred             hhh-hhhhccccccc-chHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHH
Q 011308           73 TLE-SISLDLGFSGS-TMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLF  150 (489)
Q Consensus        73 ~~~-~i~~~~~~~~~-~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l  150 (489)
                      .+| .+.+++|.+.. +.  |++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+.+.++++.++
T Consensus       254 ~~~~~~~~~~g~s~~~~~--g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (1146)
T PRK08633        254 NFPAYAKEVLGLDNTFQV--QYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFL  331 (1146)
T ss_pred             hhHHHHHHHhCCCcHHHH--HHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            344 44566788776 55  899999999999999999999999999999999998888888888888898888899999


Q ss_pred             HhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc-cchHHHHHHHhHHHHH
Q 011308          151 VGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI-LGWWRICFWVATIPAA  219 (489)
Q Consensus       151 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-~~~Wr~~f~~~~~~~~  219 (489)
                      .|++.+...+...+++.+..|+++|++++++.+....+|.++++.+++.+... .+ +...|++.+.+.+
T Consensus       332 ~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~  400 (1146)
T PRK08633        332 FGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLS-PAGLFYLIALVTL  400 (1146)
T ss_pred             HHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH
Confidence            99999998888999999999999999999999999999998888887766542 23 5566665554433

>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=99.03  E-value=3.6e-09  Score=93.93  Aligned_cols=109  Identities=17%  Similarity=0.144  Sum_probs=88.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      +...+++...+.++..|.++||+|||.++.++.+..++..++.+...+.          ......=+..+..-+...+..
T Consensus        73 lGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F----------~afv~aR~l~Gi~kgnl~v~r  142 (451)
T KOG2615|consen   73 LGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNF----------AAFVLARFLGGIFKGNLSVIR  142 (451)
T ss_pred             HhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhhhccCchHHHH
Confidence            6677889999999999999999999999999999998887777665432          111111123333345556778


Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      ++++|++++++|+.+++.++....+|.++||.++|++..
T Consensus       143 AiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  143 AIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             HHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence            899999999999999999999999999999999999887

>TIGR00901 2A0125 AmpG-related permease

Probab=99.01  E-value=1e-08  Score=96.37  Aligned_cols=160  Identities=14%  Similarity=0.022  Sum_probs=107.8

Q ss_pred             HHHHhHHHHHHhcCCCCCchhHHH--HHHHHHHHHHHHHHHhhh-----CCchhH-HHHHHHHHHHHHHHHHHhhcccCC
Q 011308          307 AVFYFSSTVFKNAGVPSDSGNICV--GIANLSGSIIAMILMDKL-----GRRVLL-LGSFLGMAIAMGVQAIAATSFVSS  378 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~d~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  378 (489)
                      ......|.+.++.|.+........  .+...+ .++.|.+.||+     |||+.+ ..+.+...+....+.+...     
T Consensus         6 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~-----   79 (356)
T TIGR00901         6 LVGNTLPYWLRSKNVSLKTIGFFSLVGLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVP-----   79 (356)
T ss_pred             hHHhHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCc-----
Confidence            344456777888888887754444  333333 88999999998     788864 5555555555444443321     


Q ss_pred             CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------cch
Q 011308          379 SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG--------PLI  450 (489)
Q Consensus       379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--------~~~  450 (489)
                      ....+.......+.+ .......+...+++.|.+|+++|+.+.|+......+|..+++.+.+.+.+..|        |+.
T Consensus        80 ~~~l~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~  158 (356)
T TIGR00901        80 STDLPLLAGLAFLIA-FFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGY  158 (356)
T ss_pred             chhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHH
Confidence            122222222222222 22223345566788999999999999999999999999999999999988888        999


Q ss_pred             hhHHHHHHHHHHHHHhhhcccCC
Q 011308          451 LYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       451 ~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      .|.+.+++.++..+..++..||+
T Consensus       159 ~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       159 IFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCC
Confidence            99888887777665555445554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.00  E-value=2.7e-09  Score=115.95  Aligned_cols=148  Identities=12%  Similarity=0.040  Sum_probs=117.9

Q ss_pred             ccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh----------
Q 011308           70 VNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT----------  138 (489)
Q Consensus        70 ~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------  138 (489)
                      +...+|.+.+ .+|.+....  |++.+.+.++.++++++.|+++|+.++++.+..+.++.+++.+..++.          
T Consensus       244 ~~~~~p~~~~~~~g~~~~~~--g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (1140)
T PRK06814        244 VLSQLPLLAKETLGGDENVA--TLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQ  321 (1140)
T ss_pred             HHHHhHHHHHHHcCCchHHH--HHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhccccccccccc
Confidence            3334565554 478777666  999999999999999999999999888887777766666665544443          


Q ss_pred             ----------hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHH
Q 011308          139 ----------KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWR  208 (489)
Q Consensus       139 ----------~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr  208 (489)
                                ++.+.++++.++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+++++.+.+.....++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~  401 (1140)
T PRK06814        322 LKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIP  401 (1140)
T ss_pred             ccchhhhhcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHH
Confidence                      6778888889999999999999999999999999999999999999999999999999888874332266


Q ss_pred             HHHHHhHHHHH
Q 011308          209 ICFWVATIPAA  219 (489)
Q Consensus       209 ~~f~~~~~~~~  219 (489)
                      ..|++.++..+
T Consensus       402 ~~~~~~~~~~~  412 (1140)
T PRK06814        402 WIILFIALANL  412 (1140)
T ss_pred             HHHHHHHHHHH
Confidence            66665554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.99  E-value=3.8e-09  Score=102.35  Aligned_cols=149  Identities=17%  Similarity=0.187  Sum_probs=106.6

Q ss_pred             HhHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHH
Q 011308          310 YFSSTVFKNAGVPSDS--GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLG  387 (489)
Q Consensus       310 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (489)
                      .-++.+..+.|-+...  +.....++..++.++.|+++|.+|||...+.+.++..++.++.+...+        ....+.
T Consensus        65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~--------~~~~ia  136 (599)
T PF06609_consen   65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQN--------MNTFIA  136 (599)
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCc--------HHHHHH
Confidence            3345666666665554  445566788888999999999999999999999999999888775433        334566


Q ss_pred             HHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhh
Q 011308          388 GMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVK  467 (489)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  467 (489)
                      ...+.+.+.+.  .......++|..|.+.|..+.++.....-....++|.+...+..+.+|++.|++..++..++.++.+
T Consensus       137 g~~l~GvgaG~--~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~  214 (599)
T PF06609_consen  137 GMVLYGVGAGV--QELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF  214 (599)
T ss_pred             HHHHHHHhhHH--HHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence            66776665433  2344556899999999988877666554444556677766666566899999988887777665544


Q ss_pred             h
Q 011308          468 R  468 (489)
Q Consensus       468 ~  468 (489)
                      +
T Consensus       215 ~  215 (599)
T PF06609_consen  215 F  215 (599)
T ss_pred             H
Confidence            3

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.99  E-value=5.4e-09  Score=99.99  Aligned_cols=146  Identities=21%  Similarity=0.197  Sum_probs=104.6

Q ss_pred             hhhhhcccccccchHHHHHHHHHH-HHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH---hhh-hhHHHHHHHH-
Q 011308           75 ESISLDLGFSGSTMAEGLVVSTCL-GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS---AIT-KNLWGMLLGR-  148 (489)
Q Consensus        75 ~~i~~~~~~~~~~~~~g~~~s~~~-~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~-~~~~~l~~~r-  148 (489)
                      +.+.+++|++.++.  |++.+... .+..++.++.|++.||+|+|+.+..+.++..+..+..   ++. ++.+.+.+.- 
T Consensus       234 ~~l~~~~G~~~~~~--g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~  311 (402)
T PRK11902        234 TFLIRGAGFSAGEV--GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKHLWTMALAIG  311 (402)
T ss_pred             HHHHHhcCCCHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            45667788887766  88876654 5688999999999999999998887777666554433   343 4555555554 


Q ss_pred             ---HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHh
Q 011308          149 ---LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFM  225 (489)
Q Consensus       149 ---~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~  225 (489)
                         +..|++.+...+....++.+.+|.+++    ++++...++|..+++.++|.+.+..| |+..|.+.++.+++..+..
T Consensus       312 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G-~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        312 IENLCGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYG-WPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHHHH
Confidence               345555666677777777777776554    44555566777767778999999999 9999999888877765554


Q ss_pred             hc
Q 011308          226 EF  227 (489)
Q Consensus       226 ~~  227 (489)
                      +.
T Consensus       387 ~~  388 (402)
T PRK11902        387 WL  388 (402)
T ss_pred             HH
Confidence            33

>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.99  E-value=7e-09  Score=88.18  Aligned_cols=159  Identities=15%  Similarity=0.073  Sum_probs=117.2

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ....+.++|..+....+.....++  -..++.+|+|....  +-+.+....-.++.+++.|.++||+|++...+.+..+.
T Consensus       265 pfw~~~iicv~yyva~fPFi~lg~--~fF~~rfGlS~~~a--~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~  340 (459)
T KOG4686|consen  265 PFWVLVIICVLYYVAWFPFITLGP--MFFQKRFGLSAVSA--GNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACIL  340 (459)
T ss_pred             cHHHHHHHHHHHHHHHHHHhhhhH--HHHHHhhCCChhhc--cchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHH
Confidence            344555566665555444433333  24688999998777  77777777777888999999999999998887775544


Q ss_pred             HHH-HHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-
Q 011308          129 IIG-ASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-  206 (489)
Q Consensus       129 ~i~-~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-  206 (489)
                      .+. -....+  +++.=.++..+.|+..+.........++...|+++.|++.+..+...++|..+.|++++.+.+..++ 
T Consensus       341 tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y  418 (459)
T KOG4686|consen  341 TLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSY  418 (459)
T ss_pred             HHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCch
Confidence            433 333332  3444456777889987777666778899999999999999999999999999999999999987764 


Q ss_pred             -HHHHHHH
Q 011308          207 -WRICFWV  213 (489)
Q Consensus       207 -Wr~~f~~  213 (489)
                       |--.|.+
T Consensus       419 ~~le~ffl  426 (459)
T KOG4686|consen  419 DNLEAFFL  426 (459)
T ss_pred             hhHHHHHH
Confidence             4444444

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=98.98  E-value=8.5e-07  Score=83.34  Aligned_cols=376  Identities=12%  Similarity=0.031  Sum_probs=186.8

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      ...++...++...+..+.....|.+..+..-+ +-.-.+...-.-.+...+.++..|.+.||..|.++...+.+..-++.
T Consensus         4 ~~~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p~-sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv   82 (432)
T PF06963_consen    4 LWRLYLSHFLSTWGDRMWEFAVPLFLISIFPG-SLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSV   82 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHH
Confidence            34556677777777777777777777665321 21111233333345556778888999999999998877765543332


Q ss_pred             HHHh------hh--h----hHHHH---HHHHHHHhhcccchh-hhHHHHHHhcC------CccchhhHHHHHHHHHHHHH
Q 011308          133 SMSA------IT--K----NLWGM---LLGRLFVGTGMGIGP-AVAALYVSEVS------PAYVRGAYGSSTQIAACLGI  190 (489)
Q Consensus       133 ~~~~------~~--~----~~~~l---~~~r~l~G~~~~~~~-~~~~~~i~~~~------~~~~r~~~~~~~~~~~~~G~  190 (489)
                      .+.+      +.  .    +-+..   ++.-.+.|.-.-... ....++=.||.      +++.+.+.++...-.--+..
T Consensus        83 ~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ck  162 (432)
T PF06963_consen   83 AASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCK  162 (432)
T ss_pred             HHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHH
Confidence            2221      11  1    11222   222222222111111 11112224443      23445566666666667788


Q ss_pred             HHHHHhhcccccccchHHHHHHHhHHHHHHHHHH-hhcc----cCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHh
Q 011308          191 LVALFVGLPAKEILGWWRICFWVATIPAAFLALF-MEFC----AESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELS  265 (489)
Q Consensus       191 ~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (489)
                      +++|++.|.+.+..+ .+....+.+...++..+. .+++    ...|. +..+++.++........ ...+.........
T Consensus       163 llaPl~vG~l~t~~s-~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  239 (432)
T PF06963_consen  163 LLAPLFVGLLMTFAS-PVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESESSSDEE-SSSESSSDPSILK  239 (432)
T ss_pred             HHHHHHHHHHhhccC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCcccccccccc-ccccccchhhHHH
Confidence            999999999998777 676666666555554433 1111    22222 22222221111100000 0000000000000


Q ss_pred             hhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHH---HHHHHHHHHHHHH
Q 011308          266 KSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNIC---VGIANLSGSIIAM  342 (489)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g  342 (489)
                      +..+.-++....|+..++.+.+...+-..++    +++.... ......++...|++...+...   ..+.++.+.++..
T Consensus       240 ~~~~~~~~~~~~w~~Y~~q~vflas~alalL----Y~TVLsf-~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p  314 (432)
T PF06963_consen  240 RLWNPLRTIIRGWRTYFRQPVFLASFALALL----YFTVLSF-GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYP  314 (432)
T ss_pred             HHHHHHHHHhccHHHHHhCHHHHHHHHHHHH----HHHHhcC-cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            0011111122345555555544433322222    2222222 233444556668888775443   4466788899999


Q ss_pred             HHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC--CcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHH
Q 011308          343 ILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS--SGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKA  420 (489)
Q Consensus       343 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  420 (489)
                      ++.+|+|..+.-..+......++.+..........+  ..+....+.+.++--.+.- ++-....-+++|..|+++||+.
T Consensus       315 ~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v  393 (432)
T PF06963_consen  315 WLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIGLW-SFDLAVTQIMQENVPESERGAV  393 (432)
T ss_pred             HHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHH-hhhHHHHHhhcccCCHHHhhHH
Confidence            999999987776666665544433332222111111  1122222222222222211 1122333478899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 011308          421 MAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       421 ~g~~~~~~~~g~~~~~~~  438 (489)
                      .|+-+..+++...+.-.+
T Consensus       394 ~gvq~sl~~lf~ll~~~~  411 (432)
T PF06963_consen  394 SGVQNSLQSLFELLSFVL  411 (432)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999877655443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.97  E-value=2.1e-09  Score=99.27  Aligned_cols=141  Identities=17%  Similarity=0.195  Sum_probs=120.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhc
Q 011308           90 EGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEV  169 (489)
Q Consensus        90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~  169 (489)
                      .|.+.+...+.-++.-.+..++.+|+|.|+.++++.++.++=-++++++++.+.+.+.+.+.|+-.+........++++.
T Consensus       261 ~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fkYI~~~  340 (412)
T PF01306_consen  261 YGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFKYITAH  340 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccchhhHHHHH-HHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccCC
Q 011308          170 SPAYVRGAYGSST-QIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAES  231 (489)
Q Consensus       170 ~~~~~r~~~~~~~-~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~  231 (489)
                      +|+|-.++...+. +.+.++|..+.+.++|.+.++.| .+..|++.+.+.++..++..+ ++++
T Consensus       341 fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G-~~~tylimg~iv~~~~li~~f~l~~~  403 (412)
T PF01306_consen  341 FDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIG-FQHTYLIMGLIVLPFTLISAFTLKKD  403 (412)
T ss_dssp             S-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred             CCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcC-cHHHHHHHHHHHHHHHHHheeeecCC
Confidence            9998877777664 67889999999999999999999 899999888877766555444 5443

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=98.97  E-value=8e-06  Score=77.82  Aligned_cols=281  Identities=10%  Similarity=0.033  Sum_probs=155.5

Q ss_pred             HHHHHHHhhhhccccccccchhhhhhhccccccc---chHHHHHHHHHHHHHHHH-HHHHHHhhcccCchhHhhhhhHHH
Q 011308           53 VLVAIISSFLFGYHLGVVNETLESISLDLGFSGS---TMAEGLVVSTCLGGAFVG-SMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~g~~~s~~~~~~~~~-~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      ++.+.+..|+..++.+    .+-.+++.+..+..   .....++-+...+..++. .++.+++++|++|++++-.....+
T Consensus         9 ~~~~~l~fF~il~~Y~----iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F   84 (472)
T TIGR00769         9 FLPLFLMFFCILFNYT----ILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPF   84 (472)
T ss_pred             HHHHHHHHHHHHHHHH----HHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHH
Confidence            3344444444444332    35556667666321   122378888777776666 889999999999999998877777


Q ss_pred             HHHHHHHhhh----h---------------------------hHHHHHHHHHHHhhcccchhh-hHHHHHHhcCCccchh
Q 011308          129 IIGASMSAIT----K---------------------------NLWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPAYVRG  176 (489)
Q Consensus       129 ~i~~~~~~~~----~---------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~  176 (489)
                      ....+++++.    +                           +.|...+.-+...+-.....+ .-..++.|.++.+|-.
T Consensus        85 ~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qak  164 (472)
T TIGR00769        85 LGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAK  164 (472)
T ss_pred             HHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence            6666665543    1                           122333333344444444444 6678899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHhhccccc-------ccchHH----HHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHH
Q 011308          177 AYGSSTQIAACLGILVALFVGLPAKE-------ILGWWR----ICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAE  245 (489)
Q Consensus       177 ~~~~~~~~~~~~G~~i~~~~~~~l~~-------~~~~Wr----~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~  245 (489)
                      |..++++.+.++|.++++.+..++.+       ..+.|.    ..+.+.++...+...+..++.+..   ..+++..+  
T Consensus       165 Rfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~---~~~~~~~~--  239 (472)
T TIGR00769       165 RFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNV---LTDPRSYN--  239 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---cCCccccc--
Confidence            99999999999999999988887762       222252    233333333333333322221110   00000000  


Q ss_pred             HHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc
Q 011308          246 AELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS  325 (489)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (489)
                                     .++..++++.+.....+++.++++|..+.+.+...++...    .+.+..-.....++.--+...
T Consensus       240 ---------------~~~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~----~nlve~~~k~~v~~~~p~~~~  300 (472)
T TIGR00769       240 ---------------PALKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGIS----INLVEVTWKSKLKAQYPSPNE  300 (472)
T ss_pred             ---------------hhhccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHH
Confidence                           0000111222333456788888888776655554444432    222222222222222222211


Q ss_pred             -------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308          326 -------GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM  361 (489)
Q Consensus       326 -------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (489)
                             .....++..++..++.+++.+|+|-+......-+..
T Consensus       301 ~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~  343 (472)
T TIGR00769       301 YSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVM  343 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                   334445566666677789999998776555444433

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=98.97  E-value=1.4e-09  Score=98.92  Aligned_cols=136  Identities=13%  Similarity=0.130  Sum_probs=96.9

Q ss_pred             ccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc----cCchhHhhhh-hHHHHHHHHHHhhh
Q 011308           64 GYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG----IGRRRAFQLC-ALPMIIGASMSAIT  138 (489)
Q Consensus        64 ~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr----~Grr~~l~~~-~~~~~i~~~~~~~~  138 (489)
                      .+....--...+++.++.|++..-.  +.+--...+...+.+++.|..+||    |||||.++.. .++..++.++.+++
T Consensus        45 qf~wA~elsy~tPyl~~lGvphk~~--S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a  122 (498)
T KOG0637|consen   45 QFGWALELSYLTPYLQSLGVPHKWS--SIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA  122 (498)
T ss_pred             HHHHHHHhccccHHHHHcCCCcccc--cccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH
Confidence            3344444445666777888876555  566666677778889999999995    8988776554 56666777777776


Q ss_pred             hhHH-----------------HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhh-HHHHHHHHHHHHHHHHHHhhccc
Q 011308          139 KNLW-----------------GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGA-YGSSTQIAACLGILVALFVGLPA  200 (489)
Q Consensus       139 ~~~~-----------------~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~-~~~~~~~~~~~G~~i~~~~~~~l  200 (489)
                      .++.                 .++++--+.=++.-.....+.+++.|...+++|.+ +.+.+.....+|.++|..+++++
T Consensus       123 aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  123 ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence            5433                 23333334445555677788999999998877777 99999999999999998888754


Q ss_pred             c
Q 011308          201 K  201 (489)
Q Consensus       201 ~  201 (489)
                      .
T Consensus       203 ~  203 (498)
T KOG0637|consen  203 G  203 (498)
T ss_pred             C
Confidence            3

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.97  E-value=1.1e-08  Score=94.29  Aligned_cols=158  Identities=28%  Similarity=0.430  Sum_probs=125.7

Q ss_pred             hhhccccccccchhhhhhhccccccc--chHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh
Q 011308           61 FLFGYHLGVVNETLESISLDLGFSGS--TMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT  138 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~  138 (489)
                      +....+........+.+..+++.+..  ..  ++..+.+.++..+++++.|.++||+|||+.+..+.....++.++.++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~   89 (338)
T COG0477          12 LLLGLDLGLLSPALPLLLSTLSLSSGRLLY--GLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA   89 (338)
T ss_pred             HHHHHhcchHHHHHHHHHHHcCCCchhHHH--HHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC
Confidence            33335555666777778777765542  34  899999999999999999999999999988888887766666777776


Q ss_pred             hh--HHHHHHHHHHHhhcccchhhhHHHHHHhcCCc-cchhhHHHHHHH-HHHHHHHHHHHhhcccccc--cchHHHHHH
Q 011308          139 KN--LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA-YVRGAYGSSTQI-AACLGILVALFVGLPAKEI--LGWWRICFW  212 (489)
Q Consensus       139 ~~--~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~-~~~~G~~i~~~~~~~l~~~--~~~Wr~~f~  212 (489)
                      .+  .+.+++.|+.+|++.+...+....++.|++|+ ++|+...+.... ...+|..+++.+++.+...  .+ ||+.|.
T Consensus        90 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  168 (338)
T COG0477          90 PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWG-WRAAFL  168 (338)
T ss_pred             ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHH
Confidence            66  89999999999999999999999999999987 678888888888 5888888888777766654  34 899776


Q ss_pred             HhHHHHHHH
Q 011308          213 VATIPAAFL  221 (489)
Q Consensus       213 ~~~~~~~~~  221 (489)
                      .........
T Consensus       169 ~~~~~~~~~  177 (338)
T COG0477         169 LAALLGLLL  177 (338)
T ss_pred             HHHHHHHHH
Confidence            665554433

>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=1.7e-09  Score=96.64  Aligned_cols=141  Identities=12%  Similarity=0.075  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      ......+..++.+++.|.+.||+|+|..++.|+..+..+.+++++....        +..+++-.+=+.+.+... ....
T Consensus       111 LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy--------~~l~vAR~LQgvgsA~~~-tsgl  181 (464)
T KOG3764|consen  111 LFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSY--------PMLFVARSLQGVGSAFAD-TSGL  181 (464)
T ss_pred             HHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchh--------HHHHHHHHHhhhhHHHHH-hhhH
Confidence            5556678899999999999999999999999999999998888876543        234555555555544333 3445


Q ss_pred             hhhcccCChhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCC
Q 011308          406 LLLSEIFPNRI-RAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKG  475 (489)
Q Consensus       406 ~~~~~~~p~~~-~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (489)
                      +++++.+|+++ |++++|+.-.+..+|-.+||+++|.+++..|+..+|++++.++++-..+-++..+.++.
T Consensus       182 amlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~  252 (464)
T KOG3764|consen  182 AMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM  252 (464)
T ss_pred             HHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc
Confidence            67889988766 69999999999999999999999999999999999999999999988887776655443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=98.96  E-value=9.9e-09  Score=102.83  Aligned_cols=171  Identities=17%  Similarity=-0.001  Sum_probs=118.4

Q ss_pred             HHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308          297 FALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT  373 (489)
Q Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (489)
                      ..+............++.+-++.+.+...   +.....++..++.++.+++.||.+||+.+..+.++.+++.++.++...
T Consensus        41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf  120 (633)
T TIGR00805        41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF  120 (633)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence            33333333455555666666777776655   556677888999999999999999999999999999999888876641


Q ss_pred             cccC-----------------------C-----------------C--c-chhHHHHHHHHHHHHHhcCCCcchhhhhcc
Q 011308          374 SFVS-----------------------S-----------------S--G-ALSLSLGGMLLFVLTFSLGAGPVPSLLLSE  410 (489)
Q Consensus       374 ~~~~-----------------------~-----------------~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  410 (489)
                      ....                       .                 .  . .....++.-++.+.+.+ ...+...+++.|
T Consensus       121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~~~~~i~d  199 (633)
T TIGR00805       121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPLGISYIDD  199 (633)
T ss_pred             hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhcCchhhhc
Confidence            1000                       0                 0  0 11222333444333332 234566779999


Q ss_pred             cCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------ccchhhHHHHHHHHHHHHHhhh
Q 011308          411 IFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL----------------------GPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       411 ~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      .+|+++|+...|+.+....+|..+|+.+++.+.+.+                      +|+..|++.+++.++..+.+++
T Consensus       200 ~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~  279 (633)
T TIGR00805       200 FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFF  279 (633)
T ss_pred             cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999887643                      1555677777777666554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK09848 glucuronide transporter; Provisional

Probab=98.95  E-value=1e-08  Score=99.54  Aligned_cols=129  Identities=16%  Similarity=0.041  Sum_probs=99.3

Q ss_pred             hhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHHH
Q 011308           73 TLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRL  149 (489)
Q Consensus        73 ~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~  149 (489)
                      ..|.+.+ .+|.+....  ++......++..++.++++++.||+|+|+++..+.++..++.++..+.+  +++.+++..+
T Consensus       250 ~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~  327 (448)
T PRK09848        250 SSLFYVRYVLNDTGLFT--VLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALA  327 (448)
T ss_pred             hheeeEeeecCChHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHH
Confidence            3444433 455443222  4444444677788999999999999999999999998888877776643  6777777888


Q ss_pred             HHhhcccchhhhHHHHHHhcCCcc-------chhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 011308          150 FVGTGMGIGPAVAALYVSEVSPAY-------VRGAYGSSTQIAACLGILVALFVGLPAKEI  203 (489)
Q Consensus       150 l~G~~~~~~~~~~~~~i~~~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~  203 (489)
                      +.|+|.+...+...++..|..|.+       ++|...++.+....+|..+++.+.+.+.+.
T Consensus       328 l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~  388 (448)
T PRK09848        328 IASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL  388 (448)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988754       358889999999999999998888776543

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.93  E-value=3.6e-08  Score=89.39  Aligned_cols=162  Identities=15%  Similarity=-0.043  Sum_probs=118.5

Q ss_pred             cchhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCC
Q 011308          303 SGINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSS  379 (489)
Q Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (489)
                      ..........+.+-++.+++.++   +..+..+.+.+.++..|.+.||+|.|+....+.++..+-++.+.+.....    
T Consensus        28 ~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~----  103 (417)
T COG2223          28 MVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYP----  103 (417)
T ss_pred             HHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCC----
Confidence            34444444455555778888877   44455677778889999999999999999999888888877777765432    


Q ss_pred             cchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhhHHHH
Q 011308          380 GALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG---PLILYTIFG  456 (489)
Q Consensus       380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~~  456 (489)
                       +.+..++...+.+.+.  +.......++++-+|++++|.++|++. .+|+|..+...+.+.+....|   |+....+..
T Consensus       104 -~~~~ll~~gll~G~~G--asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~  179 (417)
T COG2223         104 -STWQLLVIGLLLGLAG--ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYV  179 (417)
T ss_pred             -chHHHHHHHHHHhccc--ceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence             1133333333333332  233455557899999999999999999 999999999999999999888   888888888


Q ss_pred             HHHHHHHHHhhhcccC
Q 011308          457 SFCFLAVIYVKRNVME  472 (489)
Q Consensus       457 ~~~~~~~~~~~~~~~~  472 (489)
                      ...++..+..++..++
T Consensus       180 ~~l~v~~v~~~~~~~d  195 (417)
T COG2223         180 VALAIAAVLAWLGMND  195 (417)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            8777777776665543

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.93  E-value=1.3e-08  Score=98.19  Aligned_cols=146  Identities=16%  Similarity=0.186  Sum_probs=117.8

Q ss_pred             HHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH
Q 011308           56 AIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM  134 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~  134 (489)
                      +.+..++............+.+.++ ++.+ +..  +.+..+..++..++.+++++++||+|+|+.+..+.++.+++.++
T Consensus       230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~--~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~  306 (428)
T PF13347_consen  230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNE-GLI--SIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLL  306 (428)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhh--HHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHH
Confidence            3344445555555556566666555 3433 333  78888999999999999999999999999999999999999999


Q ss_pred             Hhhhh--hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc-------cchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          135 SAITK--NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA-------YVRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       135 ~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      ..+.+  |.+.+++.-++.|++.+...+...++++|..+.       ++.|...+..+...-+|..+++.+.+.+.+..
T Consensus       307 ~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~  385 (428)
T PF13347_consen  307 LFFLGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALV  385 (428)
T ss_pred             HHHHHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            88886  999999999999999999999999999999873       33578889999999999999988877765443

>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]

Probab=98.93  E-value=1.4e-09  Score=95.87  Aligned_cols=131  Identities=17%  Similarity=0.149  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhH
Q 011308           99 GGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAY  178 (489)
Q Consensus        99 ~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~  178 (489)
                      +.-.-|.++.+.+.||+|||+.+..+.+++++..++...+.+-..+.+.-+..-++..+.+.+.+.|..|.+|..-|+..
T Consensus       392 laefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatg  471 (528)
T KOG0253|consen  392 LAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATG  471 (528)
T ss_pred             HhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcc
Confidence            44456888999999999999999999999999998887765433333333333333455566778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhcccCCh
Q 011308          179 GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESP  232 (489)
Q Consensus       179 ~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~  232 (489)
                      .|.-+...-+|.++.|+++ ...+..-  ..+..+.+...++..+...++|-.+
T Consensus       472 vGtcSsmaRIggI~~p~iA-~~~e~s~--sl~i~vy~~~~ilagIavcffPiEt  522 (528)
T KOG0253|consen  472 VGTCSSMARIGGIFSPVIA-MRAELST--SLPIFVYGALFILAGIAVCFFPIET  522 (528)
T ss_pred             hhhhhhHHhhhhhhhhHHH-HHhccce--eehHHHHHHHHHHHHHHheeeeecc
Confidence            9999999999999999999 3333222  3444555666666666666666443

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.92  E-value=1.5e-07  Score=93.67  Aligned_cols=150  Identities=17%  Similarity=0.179  Sum_probs=118.0

Q ss_pred             hhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHHHHHhhhhh--------HHH
Q 011308           73 TLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGASMSAITKN--------LWG  143 (489)
Q Consensus        73 ~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~  143 (489)
                      ....+.+.+|.+.+..  ..+...+....-+..+++|.++|+ +||++.+.++.++..+|.++.+++..        ...
T Consensus        10 LvlYl~~~lg~~~~~A--~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~   87 (654)
T TIGR00926        10 LVLYFLNFLGFSESTS--TVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLL   87 (654)
T ss_pred             HHHHHHHHcCCcHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHH
Confidence            3444555677776666  677777777778889999999995 79999999999999999888776421        233


Q ss_pred             HHHHHHHHhhcccchhhhHHHHHHhcCCcc---chhhHHHHHHHHHHHHHHHHHHhhcccccc-------cchHHHHHHH
Q 011308          144 MLLGRLFVGTGMGIGPAVAALYVSEVSPAY---VRGAYGSSTQIAACLGILVALFVGLPAKEI-------LGWWRICFWV  213 (489)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~-------~~~Wr~~f~~  213 (489)
                      .+++-.+..+|.|+.-|...+...|.++++   +|...+.++..+.++|..+++.+..++.+.       .+ |...|.+
T Consensus        88 ~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~-~~~aF~i  166 (654)
T TIGR00926        88 DLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDC-YPLAFGV  166 (654)
T ss_pred             HHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcc-hHHHHHH
Confidence            566778888999999999999999999754   366788888999999999999888877633       25 8999999


Q ss_pred             hHHHHHHHHHHh
Q 011308          214 ATIPAAFLALFM  225 (489)
Q Consensus       214 ~~~~~~~~~~~~  225 (489)
                      .++..++..+..
T Consensus       167 ~~i~m~ia~lvf  178 (654)
T TIGR00926       167 PAILMILALIVF  178 (654)
T ss_pred             HHHHHHHHHHHH
Confidence            888777665553

>PRK10133 L-fucose transporter; Provisional

Probab=98.91  E-value=6.6e-08  Score=93.18  Aligned_cols=134  Identities=12%  Similarity=0.018  Sum_probs=95.3

Q ss_pred             chhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          304 GINAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      .......+.|.+.++.+.+...   ......++..++.+..|++.||+|||+.+..+..+..++.+++.....     .+
T Consensus        41 ~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-----a~  115 (438)
T PRK10133         41 ANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-----IM  115 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh-----cC
Confidence            3455666777777778887665   555667888999999999999999999999999988888766532111     12


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLL  443 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~  443 (489)
                      +.+..+....+.+.+.+.... ....++.|..|++++...+++.+....+|..+++.+.+.+.
T Consensus       116 ~~~~ll~~r~l~G~g~g~~~~-~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        116 NYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             CHHHHHHHHHHHHHHHHHHHh-hHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223344555555555554433 33445667777666667899999999999999998877654

>PTZ00207 hypothetical protein; Provisional

Probab=98.89  E-value=5.9e-08  Score=94.80  Aligned_cols=182  Identities=12%  Similarity=0.046  Sum_probs=113.3

Q ss_pred             ccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHH--HHHHHHHHHHhhhCCchhHHHHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANL--SGSIIAMILMDKLGRRVLLLGSFLGMA  362 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~~~~~~~~~~~~~~~  362 (489)
                      ++.|..+.+....... .+....+..+.+.+.++.+.+......+..++..  ...+..|++.||+|+|+++..+.++..
T Consensus        24 ~~Rw~~lva~~~~~~~-~g~~y~fsv~s~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~  102 (591)
T PTZ00207         24 PRRFALLVLGAFCSIC-TSFMYAFNLISGAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFC  102 (591)
T ss_pred             cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            4444444433333322 2233455667778888888887775544443322  344578999999999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          363 IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRL  442 (489)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l  442 (489)
                      ++.++.++......  ..+.+...+...+.+.+.+... +.....+.+.+| ++||.+.|+......+|+.+.+.+...+
T Consensus       103 iG~ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~-~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l  178 (591)
T PTZ00207        103 LGTLLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFD-LGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAF  178 (591)
T ss_pred             HHHHHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99888877532111  1233333344444444433222 233345677887 6799999999999999998655555554


Q ss_pred             HHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308          443 LEQLGPLILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       443 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      .. .++...|++.+++.++..++.+.+.+.
T Consensus       179 ~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~  207 (591)
T PTZ00207        179 FS-DNTSAYFFFLMSFALVVGILAIVFMRL  207 (591)
T ss_pred             HH-HhHHHHHHHHHHHHHHHHHHHHhheeC
Confidence            44 346667777777777766655554433

>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]

Probab=98.88  E-value=1.2e-07  Score=83.22  Aligned_cols=360  Identities=11%  Similarity=0.070  Sum_probs=214.3

Q ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchh
Q 011308           80 DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGP  159 (489)
Q Consensus        80 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~  159 (489)
                      +.+++..+.. .-+.-...-.+.+.-.+.=.+.|..-.|++++.-.+.......+.-+.++.+.+=+.-++.|...+ ..
T Consensus        35 ~~NlT~~~l~-~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aE  112 (433)
T KOG3810|consen   35 DKNLTEDQLT-NEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AE  112 (433)
T ss_pred             CCCccHHHHh-cccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HH
Confidence            4455544442 223334445556666677789999988999988888888888888889999999999999998755 44


Q ss_pred             hhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHHHHHhhcccCChhHHHhc
Q 011308          160 AVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFLALFMEFCAESPHWLFKR  238 (489)
Q Consensus       160 ~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~  238 (489)
                      .+-++++-+..+++++.++.+...++.-.|...|..++-.+.+.... ....=.+......+..+...++|..+|-+.-+
T Consensus       113 IAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~  192 (433)
T KOG3810|consen  113 IAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLPRVKRSLYFH  192 (433)
T ss_pred             HhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCCCCchhhhhh
Confidence            67788898899999999999999999988988888888877765430 22222333333333344456677666443333


Q ss_pred             CChHHHHHHHHHHhCCCCchHHHHHHhhhhh-------ccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHh
Q 011308          239 GRGAEAEAELERLFGGLHVKYSMAELSKSER-------GDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYF  311 (489)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  311 (489)
                      .+.++..  ..          +.++...+.+       ....-...+.+..++|...    ...+++....+++.....|
T Consensus       193 ~~~~~~~--v~----------~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll----~WSlWwAl~scg~~QV~nY  256 (433)
T KOG3810|consen  193 RLEDKIS--VG----------DLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLL----KWSLWWALASCGYYQVTNY  256 (433)
T ss_pred             cccccce--ec----------cchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhh----hhHHHHHHhhchhHHHHHH
Confidence            3222111  00          0011111000       0011122344455555443    2333444444566777777


Q ss_pred             HHHHHHhcCCCCC-c----hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308          312 SSTVFKNAGVPSD-S----GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL  386 (489)
Q Consensus       312 ~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      .+.+.+...-+.. .    .-....+.+.++.+..|++.-+..|..-+..+......+.+++..      ....++|+..
T Consensus       257 ~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m------~~t~~Iw~~Y  330 (433)
T KOG3810|consen  257 TQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIM------AQTQHIWVCY  330 (433)
T ss_pred             HHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhh------hcccceehhh
Confidence            7777776532221 1    334455666777778888755555543333332222222222211      1245577788


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------cchhhHHH
Q 011308          387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-----------PLILYTIF  455 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-----------~~~~~~~~  455 (489)
                      +..+++...+.+....... .+++....+.-|..+|+..++.-+-..+...+.   .|..|           +..-|.+.
T Consensus       331 a~yvlfr~~y~l~itiA~~-~iA~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~  406 (433)
T KOG3810|consen  331 AGYVLFRVIYQLTITIATF-QIARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVL  406 (433)
T ss_pred             hhHHHHHhhHhhhhhHHHH-HHHHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHH
Confidence            8888888888766543333 444555668889999988888776666655543   33222           44567788


Q ss_pred             HHHHHHHHHHhh
Q 011308          456 GSFCFLAVIYVK  467 (489)
Q Consensus       456 ~~~~~~~~~~~~  467 (489)
                      +++.+++..+.+
T Consensus       407 ~~i~~~~~~~~~  418 (433)
T KOG3810|consen  407 GVIFLIGFGIEY  418 (433)
T ss_pred             HHHHHHHHHHHH
Confidence            888777765543

>TIGR00806 rfc RFC reduced folate carrier

Probab=98.87  E-value=1.8e-07  Score=87.36  Aligned_cols=136  Identities=13%  Similarity=0.056  Sum_probs=106.1

Q ss_pred             hhHHHHhHHHHHHhcCCCCCc----hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCc
Q 011308          305 INAVFYFSSTVFKNAGVPSDS----GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSG  380 (489)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (489)
                      =...++..+.+.++.+++...    +...+..+..+..+.+|++.||+|.|+++..+.+.-.+..+++.+....      
T Consensus        42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl------  115 (511)
T TIGR00806        42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSV------  115 (511)
T ss_pred             hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH------
Confidence            345566677777777877655    5556667888999999999999999999999988888888877775432      


Q ss_pred             chhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 011308          381 ALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLIL  451 (489)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  451 (489)
                        ....+.-++++.+-+...  ....++...+|+++|+++.|+.+....+|.++++++.+. ...+||+..
T Consensus       116 --~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y  181 (511)
T TIGR00806       116 --WHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISY  181 (511)
T ss_pred             --HHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhH
Confidence              335555666666655444  555688899999999999999999999999999999998 556776643

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.86  E-value=5.1e-08  Score=95.22  Aligned_cols=134  Identities=9%  Similarity=0.039  Sum_probs=98.5

Q ss_pred             cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh-----hhhHHH
Q 011308           69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI-----TKNLWG  143 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~  143 (489)
                      ......+.+.+...-+.+..  +++.+...++..++.+++++++||+|+|+.+..+.++..++.+...+     ..+.+.
T Consensus       249 ~~~~~~~y~~~y~~~~~~~~--~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (473)
T PRK10429        249 IINGFAIYYFTYVIGDADLF--PYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALL  326 (473)
T ss_pred             HHhhheeeEEEEECCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHH
Confidence            33334444444432222333  67777777888999999999999999999999888776666555432     345677


Q ss_pred             HHHHHHHHhhcccchhhhHHHHHHhcCC-------ccchhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          144 MLLGRLFVGTGMGIGPAVAALYVSEVSP-------AYVRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       144 l~~~r~l~G~~~~~~~~~~~~~i~~~~~-------~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      +++.-++.|++.+...+...+++.|..+       +++.|..++......-+|..+++.+.+++.+..
T Consensus       327 ~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~  394 (473)
T PRK10429        327 IVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLI  394 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            7778888999999999999999999966       233456889988888899999988887776533

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.84  E-value=9.9e-08  Score=91.23  Aligned_cols=169  Identities=14%  Similarity=0.050  Sum_probs=109.7

Q ss_pred             hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHh----hhCCchhHHHH-HHHHHHHHHHHHHHhhccc
Q 011308          305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMD----KLGRRVLLLGS-FLGMAIAMGVQAIAATSFV  376 (489)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  376 (489)
                      +.....+++.+++..|.+...   ......+.+++..++.|+++|    |+|||+..+.. .+...+++.++.+......
T Consensus        20 ~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~   99 (477)
T TIGR01301        20 WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGH   99 (477)
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhh
Confidence            445555666677888887765   444556778889999999999    59999987764 5555555555544332110


Q ss_pred             ---C---CCcch---hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhH--HHHHHHHHHHHHHHHHHHHHHHHHH--H
Q 011308          377 ---S---SSGAL---SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIR--AKAMAVCMAVHWVINFFVGLLFLRL--L  443 (489)
Q Consensus       377 ---~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l--~  443 (489)
                         .   .....   +..+..+.+..+.......| ..+++.|..|+++|  +.+.++.+...++|+.+++.+.+..  .
T Consensus       100 ~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p-~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~  178 (477)
T TIGR01301       100 LFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGP-CRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLY  178 (477)
T ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence               0   00001   12222233333333333333 35689999998755  6899999999999999999988864  2


Q ss_pred             HHh-------------ccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308          444 EQL-------------GPLILYTIFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       444 ~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (489)
                      +..             +.+..|.+.+++.+++.++..+..+|..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~  222 (477)
T TIGR01301       179 KIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP  222 (477)
T ss_pred             HhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence            222             3566788888888888877777777754

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=98.82  E-value=7.8e-08  Score=81.18  Aligned_cols=357  Identities=17%  Similarity=0.186  Sum_probs=179.3

Q ss_pred             cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHH
Q 011308           69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGR  148 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r  148 (489)
                      ..+|..-.+-+.++....++  |.+.-..+-...+...+.|.++|+-|||+.-+.-++...+++ +.-.++.|-.++++|
T Consensus        55 LQgPYvYyLYstYgFgkG~I--gqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR  131 (454)
T KOG4332|consen   55 LQGPYVYYLYSTYGFGKGDI--GQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGR  131 (454)
T ss_pred             hcCceeeeeehhcCccCCcc--ceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceEEEeehh
Confidence            34555556667778887777  776666666677888899999999999997544444333332 234578899999999


Q ss_pred             HHHhhcccchhhhHHHH-HHhcCCccchhh---HHH-HHH----HHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHH
Q 011308          149 LFVGTGMGIGPAVAALY-VSEVSPAYVRGA---YGS-STQ----IAACLGILVALFVGLPAKEILGW-WRICFWVATIPA  218 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~-i~~~~~~~~r~~---~~~-~~~----~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~  218 (489)
                      ++-|+..+..+++-.++ +.|.-++  |+.   ..+ .+.    .+..+-.+++.+.+-.+.+..+- --.+|-..+...
T Consensus       132 ~LGGiaTsLLFSaFEsWliaEHnek--r~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfL  209 (454)
T KOG4332|consen  132 VLGGIATSLLFSAFESWLIAEHNEK--RGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFL  209 (454)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhc--cCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence            99999999988887765 5665432  321   111 111    12222233333334344433220 122333322222


Q ss_pred             HHH-HHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHH
Q 011308          219 AFL-ALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLF  297 (489)
Q Consensus       219 ~~~-~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (489)
                      .+. ++..-      .|-..-+++.+.++.+...                       +...+.+..+++.   .+...+.
T Consensus       210 aigmAvil~------~W~ENygdps~~kdlltqf-----------------------~gaa~aiaSD~ki---~LLG~iq  257 (454)
T KOG4332|consen  210 AIGMAVILS------SWSENYGDPSENKDLLTQF-----------------------KGAARAIASDEKI---ALLGAIQ  257 (454)
T ss_pred             HHHHHHHHh------hhhhccCChhhhHHHHHHh-----------------------hHhHHHHhcchHH---HHHHHHH
Confidence            121 11110      1222223332222211111                       0111122222221   1112222


Q ss_pred             HhhhhcchhHHHHhHHHHH-HhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCc--hhHHHHHHHHHHHHHHHHHHhhc
Q 011308          298 ALQQLSGINAVFYFSSTVF-KNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRR--VLLLGSFLGMAIAMGVQAIAATS  374 (489)
Q Consensus       298 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  374 (489)
                      .......+.....|.|.+- ++.+.+.+.+...+.+..++|+-+..++..|-..|  ..+.+.++.....+.+...... 
T Consensus       258 sLFE~smytFVFLWTPaLspn~e~iPhGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~-  336 (454)
T KOG4332|consen  258 SLFEGSMYTFVFLWTPALSPNDEEIPHGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSS-  336 (454)
T ss_pred             HHHhhhhheeeeeecccCCCCcccCCchhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhc-
Confidence            2222222222333333321 12344555566666677777777776666554332  3444444444444433333322 


Q ss_pred             ccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--Hhccchhh
Q 011308          375 FVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE--QLGPLILY  452 (489)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~--~~g~~~~~  452 (489)
                      ..+...++...++.++++-...+..+..+. -+-.+..|++.|++.+-....--++...++-..  .-.+  ..+.+..|
T Consensus       337 vsP~kes~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfFRvPLnifvClvLyn--lh~~~~p~~tr~mf  413 (454)
T KOG4332|consen  337 VSPSKESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYN--LHVDAFPTTTRNMF  413 (454)
T ss_pred             cCCCcCCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhheechhhHhhhhhhee--cccccCccccchhh
Confidence            333344555567777777777776655444 366777898888876655444333322222111  0011  12345677


Q ss_pred             HHHHHHHHHHHHHh
Q 011308          453 TIFGSFCFLAVIYV  466 (489)
Q Consensus       453 ~~~~~~~~~~~~~~  466 (489)
                      .+.++...++.+..
T Consensus       414 ~icS~~~~~a~i~~  427 (454)
T KOG4332|consen  414 GICSAFLFVASILQ  427 (454)
T ss_pred             hhhHHHHHHHHHHH
Confidence            77777766665443

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.77  E-value=3.2e-07  Score=81.53  Aligned_cols=154  Identities=18%  Similarity=0.179  Sum_probs=122.5

Q ss_pred             ccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHHHHHhhhhhHHHHHH
Q 011308           68 GVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGASMSAITKNLWGMLL  146 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~  146 (489)
                      +....-+|.+..|-|+|..+.  |++.+...+.....++..-.+++| -++|+..+....++.++.+.+.+.+.-..+..
T Consensus       225 Y~~~~WLP~ili~~G~sa~~a--G~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw  302 (395)
T COG2807         225 YIVIGWLPAILIDRGLSAAEA--GSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW  302 (395)
T ss_pred             HHHHHHHHHHHHHcCCCHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            334456899999999998888  999999999999999999999995 45677777778888888887777664433333


Q ss_pred             HHHHHhhcccchhhhHHHHHHhcCCcc-chhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          147 GRLFVGTGMGIGPAVAALYVSEVSPAY-VRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       147 ~r~l~G~~~~~~~~~~~~~i~~~~~~~-~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                       -++.|+|.|..++.+...+.+..++. +-++..++.+....+=..+||.+.|++-|..|+|+...+..+...++..+.
T Consensus       303 -~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~  380 (395)
T COG2807         303 -ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIF  380 (395)
T ss_pred             -HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence             48999999999999999999987654 445666666666666677899999999999988999988877776665554

>PRK09669 putative symporter YagG; Provisional

Probab=98.75  E-value=1.1e-07  Score=92.24  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhh--hhhHHHHHHHHHHHhhcccchhhhHHHHHHh
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAI--TKNLWGMLLGRLFVGTGMGIGPAVAALYVSE  168 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  168 (489)
                      +.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+  .++.+.+++..++.|++.+...+...++++|
T Consensus       267 ~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad  346 (444)
T PRK09669        267 TLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMFSD  346 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666677788888999999999999999999888766654433222  3577778888899999999999999999999


Q ss_pred             cCCcc-------chhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          169 VSPAY-------VRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       169 ~~~~~-------~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ..+.+       +.|...+..+....+|..+|+.+++.+.+..|
T Consensus       347 ~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G  390 (444)
T PRK09669        347 VVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD  390 (444)
T ss_pred             hhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            88632       23567788888889999999988887765443

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=98.74  E-value=2.3e-08  Score=69.43  Aligned_cols=81  Identities=21%  Similarity=0.265  Sum_probs=74.6

Q ss_pred             hccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHH
Q 011308           63 FGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLW  142 (489)
Q Consensus        63 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  142 (489)
                      .++.+..+.|.+|.+++|.++|.++.  |++.+.+++||.+|.+...++.++..+++.+..+++...+..+.+++.++++
T Consensus         4 mGigRFayTplLP~M~~~~~ls~~~a--g~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~   81 (85)
T PF06779_consen    4 MGIGRFAYTPLLPLMQADGGLSLSQA--GWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW   81 (85)
T ss_pred             hhhHHHHHHhHhHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence            35677889999999999999999888  9999999999999999999999999999999999999999999999998877


Q ss_pred             HHH
Q 011308          143 GML  145 (489)
Q Consensus       143 ~l~  145 (489)
                      .+.
T Consensus        82 ~w~   84 (85)
T PF06779_consen   82 LWS   84 (85)
T ss_pred             HHh
Confidence            653

Note that many members are hypothetical proteins.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=98.70  E-value=4.1e-08  Score=91.13  Aligned_cols=166  Identities=16%  Similarity=0.122  Sum_probs=114.6

Q ss_pred             hhhhcchhHHHHhHHHHHHh-cCCCCCchhHHH---HHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308          299 LQQLSGINAVFYFSSTVFKN-AGVPSDSGNICV---GIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAAT  373 (489)
Q Consensus       299 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (489)
                      +.+++.-..+.+|+..-+.+ .|++......++   +...-...+++||++|| +|+|+.+.++.++..++.+++.....
T Consensus        35 FsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~  114 (498)
T COG3104          35 FSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSV  114 (498)
T ss_pred             HhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccc
Confidence            33333334444444443332 335555433333   33334677889999999 59999999999999999988876530


Q ss_pred             cccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 011308          374 SFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR--IRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLIL  451 (489)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  451 (489)
                            .......+.+.+...+.+. .=+....++.|++|++  +|..++++.....++|+.++|.+.+++.++.||...
T Consensus       115 ------~~~~gl~i~L~~I~iG~Gl-~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~g  187 (498)
T COG3104         115 ------SGPGGLYIGLALIIVGTGL-FKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVG  187 (498)
T ss_pred             ------ccccHHHHHHHHHHhcccc-ccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHH
Confidence                  1112244445454444432 3356666888888753  378889999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhccc
Q 011308          452 YTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       452 ~~~~~~~~~~~~~~~~~~~~  471 (489)
                      |...++-..++.+..+...+
T Consensus       188 F~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         188 FGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             HHHHHHHHHHHHHHHHHccc
Confidence            99998888888777765543

>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]

Probab=98.68  E-value=1.2e-07  Score=93.99  Aligned_cols=135  Identities=22%  Similarity=0.099  Sum_probs=104.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      ...+..++.++|.++.|.++||+|||+++..+.++..++.+..++..+.        +...+.-++.+++ ..+......
T Consensus       123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~--------~~~~~~Rfl~G~~-~~~~~~~~~  193 (521)
T KOG0255|consen  123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNY--------WMFLIFRFLSGFF-GSGPLTVGF  193 (521)
T ss_pred             HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcH--------HHHHHHHHHHHhh-ccchhHHhH
Confidence            5566778899999999999999999999999999999888777776543        2233333333333 334455667


Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      .+..|.+++++|+.+..+ ......++.+++...+++..  +|++.+++.+....+..++ ++..+|.
T Consensus       194 ~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es  257 (521)
T KOG0255|consen  194 GLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPES  257 (521)
T ss_pred             hhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcC
Confidence            789999999999999999 88888999999999998887  7888888888877776655 4444454

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=98.68  E-value=1.1e-06  Score=81.53  Aligned_cols=144  Identities=14%  Similarity=0.034  Sum_probs=84.1

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhc--ccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-----ccCchhHhhhh-h
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLD--LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD-----GIGRRRAFQLC-A  125 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-----r~Grr~~l~~~-~  125 (489)
                      .++.+.+++.+.-.+......|.+.++  -+.+.++.  |. .|....-+. .-++|.++.|     |+||||..++= -
T Consensus         3 ~lL~~LY~lQGiP~GL~~gsiPflL~~~~~~~sy~q~--~~-fSla~~PfS-lKlLWaPiVDs~y~~~~GRRKSWiiP~Q   78 (544)
T PF13000_consen    3 ALLVLLYFLQGIPLGLAFGSIPFLLQSMAKKVSYSQQ--AI-FSLASYPFS-LKLLWAPIVDSVYSKRIGRRKSWIIPIQ   78 (544)
T ss_pred             eHHHHHHHHcCcccccccccchhhhccccCCCChhHh--ee-eeeeechhH-HHHhhhhhhhhhcccccCCcchhhhHHH
Confidence            355667788888887776778888887  56776665  32 222222222 2456677766     89999876543 2


Q ss_pred             HHHHHHHHHHhhhh----------------------hH--HHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH
Q 011308          126 LPMIIGASMSAITK----------------------NL--WGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS  181 (489)
Q Consensus       126 ~~~~i~~~~~~~~~----------------------~~--~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~  181 (489)
                      .+.++..+..+..-                      +.  ..+...-++.=+-.+.--.+.-.+.-.+..+++++.+...
T Consensus        79 ~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTc  158 (544)
T PF13000_consen   79 YLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPENVGYASTC  158 (544)
T ss_pred             HHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhhcchHHHH
Confidence            33333333222111                      11  1222222222222333344455566667788899999998


Q ss_pred             HHHHHHHHHHHHHHhhcccc
Q 011308          182 TQIAACLGILVALFVGLPAK  201 (489)
Q Consensus       182 ~~~~~~~G~~i~~~~~~~l~  201 (489)
                      ...+.+.|..++..+--.+.
T Consensus       159 qtvG~~~Gyfls~tvFlaln  178 (544)
T PF13000_consen  159 QTVGQTAGYFLSFTVFLALN  178 (544)
T ss_pred             HHhHhhhhHHHHHHHHHhhC
Confidence            88899999888877654444

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=98.67  E-value=1.8e-06  Score=79.69  Aligned_cols=134  Identities=16%  Similarity=0.160  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS  170 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (489)
                      |.+.-+-.+...+..+.+-++.+|+..+.-...+.+++.++.++.++++|.+.=+++-++.+++.|........+.. .+
T Consensus        62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~-~y  140 (402)
T PF02487_consen   62 GAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH-FY  140 (402)
T ss_pred             hHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-hc
Confidence            44555555666777778888899988776677778889999999999999999889999999999988887777644 55


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhcccccccch-HHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308          171 PAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGW-WRICFWVATIPAAFLALFMEF-CAE  230 (489)
Q Consensus       171 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~-Wr~~f~~~~~~~~~~~~~~~~-~~e  230 (489)
                      ++    ...+-++.|.+.+.++|+..-..+.+ .+. -|..+.+...+.++..+..++ +|.
T Consensus       141 ~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~  197 (402)
T PF02487_consen  141 GK----SSLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS  197 (402)
T ss_pred             Cc----cccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            43    34677777777777777776555554 331 366777666555444444444 443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=98.65  E-value=2e-07  Score=90.52  Aligned_cols=125  Identities=14%  Similarity=0.042  Sum_probs=107.9

Q ss_pred             hcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhh----------hhHHHHHHHH
Q 011308           79 LDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAIT----------KNLWGMLLGR  148 (489)
Q Consensus        79 ~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~~r  148 (489)
                      +++|.++.+.  |++.....++..++....+++.+|++.|+++.++.++.+++.+.....          ++.+.+...-
T Consensus       281 ~~lG~s~~~~--G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~  358 (468)
T TIGR00788       281 QCLPGGPSFS--GMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS  358 (468)
T ss_pred             ccCCCCcchh--hhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence            5678888877  999999999999999999999999999999999999999887654311          3334455567


Q ss_pred             HHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          149 LFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       149 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      ++.+++.+........++.+..|+++++...++.+...++|..+++.+++.+.+..|
T Consensus       359 ~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       359 IIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             HHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            888999899899999999999999999999999999999999999999998887655

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.64  E-value=3e-07  Score=87.88  Aligned_cols=139  Identities=21%  Similarity=0.063  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      +......+.+++.+.+|++.||+|-|+++..+.++.+++.++..+.....      .+.+++.-++-+.+.+... |...
T Consensus        78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~------~~~~~~~R~lqGl~~g~~~-pa~~  150 (466)
T KOG2532|consen   78 IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG------FYLLLVLRFLQGLGQGVLF-PAIG  150 (466)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc------chhhHHHHHHhHHHHhHHH-hhhh
Confidence            55667789999999999999999999999999998888888777765432      1234555555555555443 4555


Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHhhhccc
Q 011308          406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-LGPLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      .+..+-.|+++|++..++.....++|.+++-++.|.+.+. .||...|++.+++.++..++.+++..
T Consensus       151 ~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~  217 (466)
T KOG2532|consen  151 SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYS  217 (466)
T ss_pred             ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            6788889999999999999999999999999999999998 99999999999999888777665544

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=98.62  E-value=6.1e-10  Score=108.40  Aligned_cols=160  Identities=18%  Similarity=0.140  Sum_probs=103.4

Q ss_pred             ccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHh--h---hh---
Q 011308           68 GVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSA--I---TK---  139 (489)
Q Consensus        68 ~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~--~---~~---  139 (489)
                      .......+.+.++.+.+.. .   .......+...++.++...+.||+|||++++.+..+.+++.+..+  .   .+   
T Consensus       270 ~~~~~~~~~i~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  345 (451)
T PF00083_consen  270 NFIFYYSPSIFENAGISNS-F---LATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSS  345 (451)
T ss_pred             ccccccccccccccccccc-c---cccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3344456777777777665 2   112233344456666777999999999999999988888877764  1   11   


Q ss_pred             --hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHH
Q 011308          140 --NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIP  217 (489)
Q Consensus       140 --~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~  217 (489)
                        +...+.......-.......+....+..|.+|.+.|+++.++......++..+++.+...+.+..+. ...|++.+..
T Consensus       346 ~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~~~~i~~~~  424 (451)
T PF00083_consen  346 WWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGG-WGVFLIFAGV  424 (451)
T ss_pred             ccccccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccchhhHHH
Confidence              1222222221111111233456668889999999999999999998888888888888777766542 3445555554


Q ss_pred             HHHHH-HHhhcccCCh
Q 011308          218 AAFLA-LFMEFCAESP  232 (489)
Q Consensus       218 ~~~~~-~~~~~~~e~~  232 (489)
                      .++.. +..+++||+.
T Consensus       425 ~~i~~i~~~~~lpET~  440 (451)
T PF00083_consen  425 CLIAIIFVYFFLPETK  440 (451)
T ss_pred             HHHHHhheeEEEeeCC
Confidence            44444 4456689985

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.62  E-value=1.4e-06  Score=81.90  Aligned_cols=141  Identities=14%  Similarity=0.180  Sum_probs=106.3

Q ss_pred             hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh-
Q 011308           61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK-  139 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-  139 (489)
                      ++........+.....+. ++.++.++...++.......+..++.+++.++++|+|+|+++..+.++..++.++.-+.+ 
T Consensus       246 l~~~~~~~i~~s~~~yy~-~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~  324 (467)
T COG2211         246 LLLFIAFNIRGSIMVYYV-TYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA  324 (467)
T ss_pred             HHHHHHHHHHhhhhheeE-EEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC
Confidence            333333333444444333 335555666557778888888888899999999999999999999999999999888765 


Q ss_pred             -hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc-------cchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          140 -NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA-------YVRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       140 -~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                       +.+.+++..++.++|.+...+...++++|..+.       ++-|...+......=+|..++..+.+++..
T Consensus       325 ~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~  395 (467)
T COG2211         325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG  395 (467)
T ss_pred             cchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             788888899999999999999999999998763       223566677777777777777766665554

>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]

Probab=98.60  E-value=6.5e-07  Score=88.35  Aligned_cols=138  Identities=18%  Similarity=0.114  Sum_probs=108.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcch
Q 011308          325 SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVP  404 (489)
Q Consensus       325 ~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (489)
                      .......++..++.++.|+++|++|||+.+..+.+...++.++..+..+        ......+-++.+.+.+.... ..
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~--------~~~l~~GR~l~G~g~G~~~~-~~  163 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPS--------WYQLIVGRILTGLGVGGASV-LA  163 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhccchhhhhh-cc
Confidence            4666777899999999999999999999999999999999998888753        34466667777766665543 44


Q ss_pred             hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchhhHHHHHHHHHHHHHhhhcccCC
Q 011308          405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL--GPLILYTIFGSFCFLAVIYVKRNVMET  473 (489)
Q Consensus       405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (489)
                      ..+.+|..|++.||...+..+....+|..++ .+.+....+.  +|+..+.+..+.+++..+. .++.||+
T Consensus       164 piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes  232 (513)
T KOG0254|consen  164 PVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES  232 (513)
T ss_pred             hhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence            5589999999999999999999999877777 6666665543  7887777777777766666 5556654

>KOG3762 consensus Predicted transporter [General function prediction only]

Probab=98.60  E-value=7.4e-08  Score=89.68  Aligned_cols=163  Identities=21%  Similarity=0.171  Sum_probs=136.6

Q ss_pred             hhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhH
Q 011308           62 LFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNL  141 (489)
Q Consensus        62 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~  141 (489)
                      +.+...+.+...+-.-.||.+-.+.-.  |........|-.+.-++.+++..++|+-+++..++....+=.+..+..+|.
T Consensus       382 ~mG~g~~lv~tFLfWHled~~~~~~Lf--Gv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~  459 (618)
T KOG3762|consen  382 VMGAGVGLVFTFLFWHLEDLGGIKTLF--GVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNP  459 (618)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCcceee--eehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCc
Confidence            334444444444444567777554444  877778888888889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHH-HHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308          142 WGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIA-ACLGILVALFVGLPAKEILGWWRICFWVATIPAAF  220 (489)
Q Consensus       142 ~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~-~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~  220 (489)
                      |+.+...+++|+..+..+.++.+|+++..|++-|..+.++.+.. .++|-.+|.++||.+.+..+ =|..|.+.++.+++
T Consensus       460 W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg-~~ttf~~~giAcl~  538 (618)
T KOG3762|consen  460 WMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG-ARTTFRIFGIACLV  538 (618)
T ss_pred             hheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh-hHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988765 58899999999999999998 59999998888877


Q ss_pred             HHHHhhc
Q 011308          221 LALFMEF  227 (489)
Q Consensus       221 ~~~~~~~  227 (489)
                      .+++...
T Consensus       539 ~l~~~~~  545 (618)
T KOG3762|consen  539 TLALFIS  545 (618)
T ss_pred             HHHHHHH
Confidence            6655433

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.57  E-value=4e-06  Score=75.93  Aligned_cols=153  Identities=14%  Similarity=0.048  Sum_probs=106.5

Q ss_pred             HhHHHHHHhcCCCC---CchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308          310 YFSSTVFKNAGVPS---DSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL  386 (489)
Q Consensus       310 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      ...|.+.+....+.   +.+......+..+.++..+++.+|+|.|+-++.++.++++++.++.-.....     .....+
T Consensus        34 iLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~-----~y~~FL  108 (422)
T COG0738          34 ILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK-----SYGFFL  108 (422)
T ss_pred             hhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh-----hHHHHH
Confidence            34444444444443   3366666778889999999999999999999999999999988876443321     112223


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------hc
Q 011308          387 GGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQ-------------------LG  447 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~-------------------~g  447 (489)
                      ..+.+.+.+.+.. ......++..+.|++....-+.+.+.++.+|++++|.+++.+..+                   ..
T Consensus       109 ~~lFila~Gi~~L-etaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~  187 (422)
T COG0738         109 VALFILASGIGLL-ETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASS  187 (422)
T ss_pred             HHHHHHHhhhHHH-HhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence            3333333333322 234455788888888889999999999999999999999998872                   12


Q ss_pred             cchhhHHHHHHHHHHHHHhhh
Q 011308          448 PLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      ++.+|...+.+.++..+....
T Consensus       188 v~~pYl~~~~~lvll~v~~~~  208 (422)
T COG0738         188 VQFPYLILAGLLVLLAVLILL  208 (422)
T ss_pred             hhhHHHHHHHHHHHHHHHHHh
Confidence            567788888777776665543

>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]

Probab=98.53  E-value=5e-07  Score=86.66  Aligned_cols=140  Identities=18%  Similarity=0.075  Sum_probs=104.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      ....+.++.+++.+.++.+.||++..+.+....++..+..++.....+        .+..++.-++.+..-+.+ .|...
T Consensus        86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s--------~~~~ialr~llGl~es~~-wP~~~  156 (495)
T KOG2533|consen   86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHS--------FPGLIALRFLLGLFESGG-WPGVV  156 (495)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHhccc-chHHH
Confidence            677788999999999999999999555554444433333322222222        233455555666655544 45556


Q ss_pred             hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhhHHHHHHHHHHHHHhhhcccCCC
Q 011308          406 LLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE------QLGPLILYTIFGSFCFLAVIYVKRNVMETK  474 (489)
Q Consensus       406 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  474 (489)
                      .++..-+.+++|+..+|+.+....+|+++|+.+...+..      ..||++.|++-+++.++..++.++++|+..
T Consensus       157 ~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P  231 (495)
T KOG2533|consen  157 AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNP  231 (495)
T ss_pred             HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCCh
Confidence            689999999999999999999999999999999888643      467999999999999999988888877643

>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]

Probab=98.49  E-value=1.4e-07  Score=86.14  Aligned_cols=179  Identities=21%  Similarity=0.110  Sum_probs=132.5

Q ss_pred             hHHHHHHHHhhhhccccccccchhhhhhhcccccccchHH------HHHHH-HHHHHHHHHHHHHHHhhcccCchhHhhh
Q 011308           51 PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAE------GLVVS-TCLGGAFVGSMFSGWIADGIGRRRAFQL  123 (489)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~------g~~~s-~~~~~~~~~~~~~g~l~dr~Grr~~l~~  123 (489)
                      +.++..+...|+..+.....+.....+.++.++.+++...      ..... +..+++..+-.+...+.|+.|||++.+.
T Consensus       304 ~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~  383 (538)
T KOG0252|consen  304 KHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLM  383 (538)
T ss_pred             HHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHh
Confidence            5666777788887777777777888888888776554421      11111 1122333355566778999999999999


Q ss_pred             hhHHHHHHHHHHhhhhh--------HHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHH
Q 011308          124 CALPMIIGASMSAITKN--------LWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF  195 (489)
Q Consensus       124 ~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~  195 (489)
                      |.+++++..+..+...|        ...+.+..++.-+|-+   .....+-+|.+|.+-|+..-|+..+..-+|.+++..
T Consensus       384 GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn---~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~  460 (538)
T KOG0252|consen  384 GFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPN---ATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAF  460 (538)
T ss_pred             hHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCC---ceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHH
Confidence            99999999999988766        1223334444444422   233456789999999999999999999999999999


Q ss_pred             hhccccc-----ccchHHHHHHHhHHHHHHHHHHhhcccCChh
Q 011308          196 VGLPAKE-----ILGWWRICFWVATIPAAFLALFMEFCAESPH  233 (489)
Q Consensus       196 ~~~~l~~-----~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~  233 (489)
                      .-.++.+     ..+ -|+.|++.+...++..+..+++||+.+
T Consensus       461 ~F~~~t~~~yp~~~g-~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  461 GFLYLTDHNYPPNIG-VRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HhhHhhhccCCcccc-chHHHHHHHHHHHHhHheeEEeecccc
Confidence            9888888     666 799999999999988888888998753

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.49  E-value=2.1e-06  Score=74.39  Aligned_cols=155  Identities=15%  Similarity=0.136  Sum_probs=101.5

Q ss_pred             hhhcchhHHHHhHHHHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhccc
Q 011308          300 QQLSGINAVFYFSSTVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFV  376 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (489)
                      ...+..+.+..|.+.+.+..+++..+...+.   .++..+ .+..|.+.|++|.+..+..+.+...++...+........
T Consensus        13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i   91 (250)
T PF06813_consen   13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI   91 (250)
T ss_pred             HhcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            3344566778899999998999887754444   345544 477899999999999999999999999988877655432


Q ss_pred             CCCcchhHHHHHHHHHHHHHhcCC-CcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Q 011308          377 SSSGALSLSLGGMLLFVLTFSLGA-GPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIF  455 (489)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~  455 (489)
                      . ..+.|..  +...+..+.+.++ .........+.+| ++||++.|+.-....+++.+-..+...+.+. +....+...
T Consensus        92 ~-~~~~~~~--~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~l  166 (250)
T PF06813_consen   92 P-SLPVWLM--CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLFL  166 (250)
T ss_pred             C-ccchHHH--HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHHH
Confidence            1 1222322  2222223222222 1222233457788 5799999999999999998888887766654 333333444


Q ss_pred             HHHHH
Q 011308          456 GSFCF  460 (489)
Q Consensus       456 ~~~~~  460 (489)
                      +....
T Consensus       167 a~~~~  171 (250)
T PF06813_consen  167 AVLPA  171 (250)
T ss_pred             HHHHH
Confidence            44333

>PRK11462 putative transporter; Provisional

Probab=98.49  E-value=2.2e-06  Score=83.15  Aligned_cols=112  Identities=12%  Similarity=0.003  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh--hHHHHHHHHHHHhhcccchhhhHHHHHHh
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK--NLWGMLLGRLFVGTGMGIGPAVAALYVSE  168 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~~~~~~~~~~~i~~  168 (489)
                      +.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.+  +...+++.-++.|++.+...+...+++.|
T Consensus       266 ~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ad  345 (460)
T PRK11462        266 VAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMMSD  345 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5677788888899999999999999999988765554444333333322  23334455566788777777776778888


Q ss_pred             cCCc-------cchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          169 VSPA-------YVRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       169 ~~~~-------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                      ..+.       ++.|...+......-+|..+++.+++.+.+
T Consensus       346 ~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~  386 (460)
T PRK11462        346 TVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLA  386 (460)
T ss_pred             hHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7762       223455566666777777777777666553

>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]

Probab=98.47  E-value=5.2e-06  Score=79.15  Aligned_cols=138  Identities=17%  Similarity=0.138  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc
Q 011308          330 VGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS  409 (489)
Q Consensus       330 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      .++..++.++..|.++||+|||..+........+....+.+...         | .++ ..-..+++ ........++++
T Consensus        71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~~---------~-~~~-~~~l~g~~-~~~~s~~~a~va  138 (463)
T KOG2816|consen   71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQGY---------W-FFL-LLGLSGGF-SAIFSVGFAYVA  138 (463)
T ss_pred             hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHHH---------H-Hhh-hcccccch-hhhhhhhhhhee
Confidence            36777888999999999999999998888877777666655431         1 111 11111111 122345566899


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHH
Q 011308          410 EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQ  479 (489)
Q Consensus       410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  479 (489)
                      |....+.|....|+.+.....+..++|.+.+.+.+..|+..+|.+.++..++..+......||+..++.+
T Consensus       139 dis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~  208 (463)
T KOG2816|consen  139 DISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER  208 (463)
T ss_pred             eccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence            9999999999999999999999999999999999999999999999999999999888888887655443

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=98.45  E-value=2.9e-05  Score=76.16  Aligned_cols=154  Identities=18%  Similarity=0.219  Sum_probs=116.8

Q ss_pred             cccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHHHHHHHHHHhhhhh-------
Q 011308           69 VVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALPMIIGASMSAITKN-------  140 (489)
Q Consensus        69 ~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~-------  140 (489)
                      .....+..+.++++.+....  .-..+.+.-......+.+++++|- +||-+.+.++.++..++..+..++..       
T Consensus        56 ~~~nlv~ylt~~~~~~~~~a--a~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~  133 (571)
T KOG1237|consen   56 LVSNLVTYLTLELHASGGGA--ANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPF  133 (571)
T ss_pred             chhHHHHHHHHHhccchHHH--HHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence            35666777888888776544  566777777777888999999996 58999999998888887655443221       


Q ss_pred             ------------------HHHHHHHHHHHhhcccchhhhHHHHHHhcCC---cc---chhhHHHHHHHHHHHHHHHHHHh
Q 011308          141 ------------------LWGMLLGRLFVGTGMGIGPAVAALYVSEVSP---AY---VRGAYGSSTQIAACLGILVALFV  196 (489)
Q Consensus       141 ------------------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~---~~---~r~~~~~~~~~~~~~G~~i~~~~  196 (489)
                                        ...+..+.-+..+|.|+.-+...++-+|-++   ++   ++...+.++....++|..++..+
T Consensus       134 ~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~  213 (571)
T KOG1237|consen  134 MCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTV  213 (571)
T ss_pred             cccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHH
Confidence                              1245666777888999999999999999998   32   22367888889999999999998


Q ss_pred             hcccccccchHHHHHHHhHHHHHHHHHHh
Q 011308          197 GLPAKEILGWWRICFWVATIPAAFLALFM  225 (489)
Q Consensus       197 ~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~  225 (489)
                      -.+.-+..+ |.+.|.+..+...+..+++
T Consensus       214 ~vyiq~~~~-w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  214 LVYIQDNVG-WKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             HHhhhhccc-ceeeccHHHHHHHHHHHHH
Confidence            888878888 9999988877766555443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.45  E-value=7e-06  Score=75.02  Aligned_cols=153  Identities=16%  Similarity=0.256  Sum_probs=123.0

Q ss_pred             cchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc-ccCchhHhhhhhHHHHHHHHHHh---hhhhHHHHH
Q 011308           71 NETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIAD-GIGRRRAFQLCALPMIIGASMSA---ITKNLWGML  145 (489)
Q Consensus        71 ~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~d-r~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~  145 (489)
                      -.++.++ .+-||.+..+.  .-+.+....|..++-...|++.. |.++|+.-..++....++..+..   ...+.+.+.
T Consensus       228 D~iLEPygg~Vfgmsv~eT--T~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~  305 (403)
T PF03209_consen  228 DVILEPYGGEVFGMSVGET--TRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFR  305 (403)
T ss_pred             HHHcCCchhHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence            3344333 45689998888  78999999999999999999877 78888888888888777766644   445788899


Q ss_pred             HHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccc---------hHHHHHHHhHH
Q 011308          146 LGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILG---------WWRICFWVATI  216 (489)
Q Consensus       146 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~---------~Wr~~f~~~~~  216 (489)
                      ..-++.|++.|.......+...|...+++.|..+|.+.....++..++..+++.+.|...         .+...|.+.++
T Consensus       306 ~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~  385 (403)
T PF03209_consen  306 PGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAV  385 (403)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998887765321         16677777777


Q ss_pred             HHHHHHHHh
Q 011308          217 PAAFLALFM  225 (489)
Q Consensus       217 ~~~~~~~~~  225 (489)
                      ..++.+++.
T Consensus       386 ll~~a~~ll  394 (403)
T PF03209_consen  386 LLLAALVLL  394 (403)
T ss_pred             HHHHHHHHH
Confidence            666655543

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.30  E-value=1.5e-05  Score=63.54  Aligned_cols=107  Identities=12%  Similarity=0.106  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc
Q 011308           93 VVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA  172 (489)
Q Consensus        93 ~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~  172 (489)
                      -.++......+++++...+.+++|.|+.+++|.+...+-.... +-++.+.++.+-++.|++.+..+++...++.+..++
T Consensus        42 slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~~  120 (156)
T PF05978_consen   42 SLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYSTE  120 (156)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCCH
Confidence            3566667778888999999999999999999999888655444 456788899999999999999999999999999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhccc
Q 011308          173 YVRGAYGSSTQIAACLGILVALFVGLPA  200 (489)
Q Consensus       173 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l  200 (489)
                      ++|++-.+++......+.++|.++...+
T Consensus       121 ~~~~~~~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  121 ETIGRNTGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888887765444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=98.27  E-value=5.5e-05  Score=71.44  Aligned_cols=108  Identities=12%  Similarity=0.152  Sum_probs=87.6

Q ss_pred             hHhhhhhHHHHHHHHHHhhhh---------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCcc---chhhHHHHHHHHH
Q 011308          119 RAFQLCALPMIIGASMSAITK---------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAY---VRGAYGSSTQIAA  186 (489)
Q Consensus       119 ~~l~~~~~~~~i~~~~~~~~~---------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~---~r~~~~~~~~~~~  186 (489)
                      |.++++.++..+|.++..++.         +.+.++++-++.++|.|+.-|...++..|.++++   +|...+.++..+.
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i   81 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI   81 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence            567788888888888844432         2367889999999999999999999999999865   4667888999999


Q ss_pred             HHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc
Q 011308          187 CLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF  227 (489)
Q Consensus       187 ~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~  227 (489)
                      ++|..++..+.+++.+..+ |.+.|.+.++..++..+..+.
T Consensus        82 n~G~~~~~~~~~~i~~~~~-~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   82 NIGSLFSPTLVPYIQQNYG-WFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHCCCHHHHCS--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhhhHhhcccchhhccccc-hhhhhhHHHHHHHHHHHHHHh
Confidence            9999999999999999999 999999988887776655443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>PF12832 MFS_1_like: MFS_1 like family

Probab=98.22  E-value=2e-06  Score=59.49  Aligned_cols=70  Identities=26%  Similarity=0.327  Sum_probs=58.8

Q ss_pred             HHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH
Q 011308           57 IISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM  128 (489)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~  128 (489)
                      -..+++.....+.+.|.+|.+.++.|++..++  |.+.++..+...++++++|.++||+|+++.++....++
T Consensus         6 k~~yf~~f~~~g~~~Pfl~~~~~~~Gl~~~~i--Gil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen    6 KAFYFFYFAALGCLYPFLPLYLKQLGLSPSQI--GILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34455556666778888999999999998888  99999999999999999999999999999887765543

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=98.15  E-value=0.0089  Score=57.75  Aligned_cols=278  Identities=11%  Similarity=0.124  Sum_probs=142.7

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccc---cccchHHHHHHHHHHH-HHHHHHHHHHHhhcccCchhHhhhh
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGF---SGSTMAEGLVVSTCLG-GAFVGSMFSGWIADGIGRRRAFQLC  124 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~  124 (489)
                      .+..++.+.+..|+..++.+..    -.+.+.+=+   +.+..  ..+-....+ ...+...+..++++|++|++++-+.
T Consensus        22 E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvvt~~gae~I--~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~   95 (491)
T PF03219_consen   22 ELKKFLPLALMFFFILFNYTIL----RDLKDTLVVTAQGAEVI--PFLKVWGVLPVAILFTILYSKLSNRLSREKLFYII   95 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEEecCChhHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3444555555555555554332    223332211   22222  444443333 3345567789999999999988766


Q ss_pred             hHHHHHHHHHHhhh---------h----------------------hHHHHHHHHHHHhhcccchhh-hHHHHHHhcCCc
Q 011308          125 ALPMIIGASMSAIT---------K----------------------NLWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPA  172 (489)
Q Consensus       125 ~~~~~i~~~~~~~~---------~----------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~  172 (489)
                      ...+.....+.++.         +                      +.|.+.+.-+..-+-.....+ .-..+..|.++.
T Consensus        96 ~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~  175 (491)
T PF03219_consen   96 IIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTV  175 (491)
T ss_pred             HHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            66665555554441         0                      112222222222222233333 346788999999


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhccccc---------ccchHHHHHHH-hHHHH---HHHHHHhhcccCChhHHHhcC
Q 011308          173 YVRGAYGSSTQIAACLGILVALFVGLPAKE---------ILGWWRICFWV-ATIPA---AFLALFMEFCAESPHWLFKRG  239 (489)
Q Consensus       173 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~---------~~~~Wr~~f~~-~~~~~---~~~~~~~~~~~e~~~~~~~~~  239 (489)
                      +|-.+..++++.+.++|.++++.+...+.+         ... |...+.. ..+..   ++......++.+..   ..++
T Consensus       176 ~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~-~~~~l~~l~~~v~~~g~~i~~~~~~~~~~v---l~~~  251 (491)
T PF03219_consen  176 EEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDA-WELSLNSLMGIVLILGIVIILLYRYMNKNV---LTDP  251 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCcc
Confidence            999999999999999999999988887777         122 5543322 11111   11111111111100   0000


Q ss_pred             ChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhc
Q 011308          240 RGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNA  319 (489)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (489)
                      +..                 +.....++++.+..-..+++.++++|....+.+....+...    .+.+..-.....++.
T Consensus       252 ~~~-----------------~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~----inLvE~~wK~~lk~~  310 (491)
T PF03219_consen  252 RFY-----------------PSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGIS----INLVEVVWKSQLKQL  310 (491)
T ss_pred             ccc-----------------hhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            000                 00001122223333456677788888777665555444442    233332222222222


Q ss_pred             CCCCCc-------hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 011308          320 GVPSDS-------GNICVGIANLSGSIIAMILMDKLGRRVLLLGS  357 (489)
Q Consensus       320 ~~~~~~-------~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (489)
                      --++..       .....++..++..++++.+.+|+|-+......
T Consensus       311 ~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Alit  355 (491)
T PF03219_consen  311 YPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALIT  355 (491)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence            112211       34445666666678888899998876655443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.12  E-value=0.00018  Score=72.07  Aligned_cols=151  Identities=15%  Similarity=0.114  Sum_probs=96.5

Q ss_pred             HhcCCCCCchh---HHHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHH
Q 011308          317 KNAGVPSDSGN---ICVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLF  392 (489)
Q Consensus       317 ~~~~~~~~~~~---~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (489)
                      +..+.+.....   ..+....-+..+++|++.|+ +|+++.+..+.++..++..++.+...............+.++.+.
T Consensus        16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLi   95 (654)
T TIGR00926        16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALI   95 (654)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHH
Confidence            34555554422   23333444666788999997 689999999988888888777654321110011112233334444


Q ss_pred             HHHHhcCCCcchhhhhcccCChh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------ccchhhHHHHHHHHHH
Q 011308          393 VLTFSLGAGPVPSLLLSEIFPNR---IRAKAMAVCMAVHWVINFFVGLLFLRLLEQL-------GPLILYTIFGSFCFLA  462 (489)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~-------g~~~~~~~~~~~~~~~  462 (489)
                      .++.+. .-|...+...|.++++   .+-..+.+.....++|+.+++.+.+++.+..       +|...|.+.+++++++
T Consensus        96 a~G~Gg-iKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia  174 (654)
T TIGR00926        96 ALGTGG-IKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILA  174 (654)
T ss_pred             Hhhccc-cccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHH
Confidence            443332 3355556777777643   4778889999999999999999999887553       4777888888887777


Q ss_pred             HHHhhh
Q 011308          463 VIYVKR  468 (489)
Q Consensus       463 ~~~~~~  468 (489)
                      .++...
T Consensus       175 ~lvf~~  180 (654)
T TIGR00926       175 LIVFMA  180 (654)
T ss_pred             HHHHHH
Confidence            666543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.04  E-value=0.00028  Score=63.68  Aligned_cols=153  Identities=16%  Similarity=0.133  Sum_probs=94.6

Q ss_pred             HHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHH
Q 011308          314 TVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGML  390 (489)
Q Consensus       314 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (489)
                      ..++..|++...+..++   .....+...+.|.+.||+|||+..+...++..++++..-.         .+....++.-+
T Consensus        59 ~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---------~~~~~L~~GRv  129 (354)
T PF05631_consen   59 ALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---------SNYPVLLLGRV  129 (354)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---------cccHHHHHHHH
Confidence            44566788766643333   3556677778899999999999988888777777654321         22333444445


Q ss_pred             HHHHHHhcCCCcchhhhhcc----cCChhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHHHH
Q 011308          391 LFVLTFSLGAGPVPSLLLSE----IFPNRIRAKAMAVCMA-VHWVINFFVGLLFLRLLEQLG--PLILYTIFGSFCFLAV  463 (489)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~----~~p~~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~  463 (489)
                      +.+...+......-.=++.|    -+|++..+...+...+ .+.+..+.+..+...+.+..+  ...+|.....+.+++.
T Consensus       130 lgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~  209 (354)
T PF05631_consen  130 LGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAA  209 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence            55544443322221113333    3576767777776663 344555666666666777665  4778888888888888


Q ss_pred             HHhhhcccCCCC
Q 011308          464 IYVKRNVMETKG  475 (489)
Q Consensus       464 ~~~~~~~~~~~~  475 (489)
                      ++.....+|..+
T Consensus       210 ~~I~~~W~ENyg  221 (354)
T PF05631_consen  210 VLILKTWPENYG  221 (354)
T ss_pred             HHHHhcccccCC
Confidence            777655566543

>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]

Probab=98.01  E-value=3.6e-05  Score=72.68  Aligned_cols=144  Identities=16%  Similarity=0.022  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCC-chhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcch
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGR-RVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVP  404 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (489)
                      +.....++..++++..|+...|.++ |+.++.+.+...++.+++.......   +...++.+.+-.+.+++  .+.....
T Consensus        76 viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~---~~~~y~mL~~R~l~Gvg--~~n~a~l  150 (488)
T KOG2325|consen   76 VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVP---NGVKYLMLVARILTGVG--VGNFAVL  150 (488)
T ss_pred             HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcc---cchHHHHHHHHHHcCcC--cccHHHH
Confidence            4445668888999999999999885 8888899999999988874443321   12334444444444333  3444566


Q ss_pred             hhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--c-----------cchhhHHHHHHHHHHHHHhhhccc
Q 011308          405 SLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQL--G-----------PLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       405 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~--g-----------~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      -.|+++....+.|.++++..+...-+|.++||.+...+....  |           |..+-++.+.+.++..++...+.+
T Consensus       151 R~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~  230 (488)
T KOG2325|consen  151 RAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFK  230 (488)
T ss_pred             HHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhhee
Confidence            778888777788999999999888888888888765443210  1           445667778888888777777776


Q ss_pred             CCC
Q 011308          472 ETK  474 (489)
Q Consensus       472 ~~~  474 (489)
                      |..
T Consensus       231 E~~  233 (488)
T KOG2325|consen  231 EVY  233 (488)
T ss_pred             ecc
Confidence            643

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=97.97  E-value=0.00039  Score=66.40  Aligned_cols=55  Identities=18%  Similarity=0.033  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308          383 SLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  438 (489)
                      +..++...+++..-|... .....+..+..++++|..+-.+...+..+|-.+|..+
T Consensus       373 ~~~~~~~~l~gltnGy~~-s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l  427 (437)
T TIGR00939       373 AYFIILMLLFGFSNGYLG-SLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL  427 (437)
T ss_pred             HHHHHHHHHHHHhhhHHH-HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444445554444322 3444466777888888888888888888887777765

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=97.92  E-value=0.00014  Score=62.15  Aligned_cols=240  Identities=7%  Similarity=0.000  Sum_probs=109.2

Q ss_pred             cchhhHHHHHHHHHHHHHHHHHHhhccc---c--cccchHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHH
Q 011308          173 YVRGAYGSSTQIAACLGILVALFVGLPA---K--EILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAE  247 (489)
Q Consensus       173 ~~r~~~~~~~~~~~~~G~~i~~~~~~~l---~--~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  247 (489)
                      |+|++.+.+...+.++|.++....--.-   .  -... |++.+.+.+++.++-+++..++-..-. ...++        
T Consensus         2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~-W~~I~si~~lL~~IpLIly~ifGk~fd-~~~~~--------   71 (267)
T PF07672_consen    2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNN-WQWILSIFILLIFIPLILYIIFGKNFD-IYSPK--------   71 (267)
T ss_pred             CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccc-ccCcc--------
Confidence            5677777788888888887765442111   1  1122 999999888777666555443321100 00000        


Q ss_pred             HHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCC-----
Q 011308          248 LERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVP-----  322 (489)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  322 (489)
                                     +.+++++.+.+.+.+..+.+|++.-|...+.+.......  .....+.+........+.+     
T Consensus        72 ---------------~k~~k~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~wLv~~--V~p~t~~~~~~~~~~s~~ni~~~~  134 (267)
T PF07672_consen   72 ---------------EKQEKENSTLSKKPSYKSILKEKETWKWILIYGIWLVVV--VFPFTPSWFNILIWISPANIKSVV  134 (267)
T ss_pred             ---------------cccccccccccccchHHHHHccchHHHHHHHHHHHheeE--EEeccchhHhHhhhcCcccccccc
Confidence                           001111222234467888999888876665554443321  1111223333333333321     


Q ss_pred             -CCc------hhH-HHHHHHHHHHHHHHHHHhh-hCCchhHHHHHHHHHHHHHHHHHHhh-cccCCCcchhHHHHHHHHH
Q 011308          323 -SDS------GNI-CVGIANLSGSIIAMILMDK-LGRRVLLLGSFLGMAIAMGVQAIAAT-SFVSSSGALSLSLGGMLLF  392 (489)
Q Consensus       323 -~~~------~~~-~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  392 (489)
                       .+.      ... ++..+..+|.+..|...+. ++||+.+.. .+.+.+.+.++..... .....+...........++
T Consensus       135 ~~~~~~~~~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~-~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl  213 (267)
T PF07672_consen  135 SGGGFNWIIPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHF-IISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFL  213 (267)
T ss_pred             cccccchhhHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHH-HHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH
Confidence             111      122 2223333454555665554 345554432 2222222111111111 1111111112223333344


Q ss_pred             HHHHhcCCCcchhhhhccc--CChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          393 VLTFSLGAGPVPSLLLSEI--FPNRIRAKAMAVCMAVHWVINFFVGLLFL  440 (489)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~g~~~~~~~~g~~~~~~~~g  440 (489)
                      .+.+..+..++......|.  ..|++.|...|+.-.++++.-.+.-.+..
T Consensus       214 ~G~f~WgiQ~ViL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S  263 (267)
T PF07672_consen  214 AGFFLWGIQGVILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILS  263 (267)
T ss_pred             HHHHHHhhhHHHhcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555554444443  23455677777666666665555444433

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=97.76  E-value=0.039  Score=52.14  Aligned_cols=152  Identities=11%  Similarity=0.020  Sum_probs=98.0

Q ss_pred             hhhHHHHHHHHhhhhccccccccchhhhhhhcccccccc-hHHHHHHHHHHH-HHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           49 SLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGST-MAEGLVVSTCLG-GAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~g~~~s~~~~-~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      .+..++.+.+..++..++.+    .+-.+.+.+.++... ....++-+...+ +..+..++.+++.+++.|++++-.-+.
T Consensus        25 E~~kflpl~Ll~f~I~~ny~----~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~  100 (509)
T COG3202          25 ELKKFLPLALLFFCILFNYN----LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILG  100 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            34445555555555555433    344556666554221 123677777777 667888999999999999999988777


Q ss_pred             HHHHHHHHHhhhh---------h-----------------------HHHHHHHHHHHhhcccchhh-hHHHHHHhcCCcc
Q 011308          127 PMIIGASMSAITK---------N-----------------------LWGMLLGRLFVGTGMGIGPA-VAALYVSEVSPAY  173 (489)
Q Consensus       127 ~~~i~~~~~~~~~---------~-----------------------~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~  173 (489)
                      .+....+++++.-         +                       .|...+.-.+.-+-.+...+ .-.....|.+..+
T Consensus       101 ~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~  180 (509)
T COG3202         101 FFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIE  180 (509)
T ss_pred             HHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            7777777766520         1                       12222222222222222222 3345678888888


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 011308          174 VRGAYGSSTQIAACLGILVALFVGLPAKEIL  204 (489)
Q Consensus       174 ~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~  204 (489)
                      |-.|..++++.+.+++..++..+..++.+..
T Consensus       181 eakRFy~lf~l~~ni~lllsg~~~~~~~k~~  211 (509)
T COG3202         181 EAKRFYPLFGLGANISLLLSGEVTSWLSKHR  211 (509)
T ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHhhch
Confidence            8899999999999999999999888887743

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.0063  Score=56.22  Aligned_cols=118  Identities=8%  Similarity=-0.027  Sum_probs=57.5

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHH----HHHHHHHHHHhhcccCchhHhhhhhHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGG----AFVGSMFSGWIADGIGRRRAFQLCALPMI  129 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~----~~~~~~~~g~l~dr~Grr~~l~~~~~~~~  129 (489)
                      .+.++..+-.......+..+.+.+.+++.-+..+   -.....+.+.    ..+....-..+.-|. |+++.....+...
T Consensus        21 ~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~---~~F~~~~~~~a~i~~ll~~~~n~~~~~~~-~~~~~~~l~~~~i   96 (406)
T KOG1479|consen   21 LIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNS---KNFTSSYTLAAQIPLLLFNLLNAFLNTRL-RTRVGYLLSLIAI   96 (406)
T ss_pred             HHHHHHhcccccchHhhhccHHHHHhhcCCCchH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3334444444555666777778777776543332   2333333333    334444444555552 2222111111111


Q ss_pred             HHHHHH--hh-------hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchh
Q 011308          130 IGASMS--AI-------TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRG  176 (489)
Q Consensus       130 i~~~~~--~~-------~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~  176 (489)
                      +....+  +.       ...+...++.-.+.|++.|..........++ +|++.-+
T Consensus        97 l~i~~l~~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytq  151 (406)
T KOG1479|consen   97 LFIVTLDLALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQ  151 (406)
T ss_pred             HHHHHHHHHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHH
Confidence            111111  11       1245666667778888877777666666665 4555443

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=97.65  E-value=0.00098  Score=64.08  Aligned_cols=153  Identities=19%  Similarity=0.211  Sum_probs=97.4

Q ss_pred             HHHHhcCCCCCchhHHHHHHHH--HHHHHHHHHHhhhC-----CchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHH
Q 011308          314 TVFKNAGVPSDSGNICVGIANL--SGSIIAMILMDKLG-----RRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSL  386 (489)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~l~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (489)
                      .+.++.+.++........+..+  ...++.|.++|-+.     ||+-++.+.++..++.+.+...+..    ..+.....
T Consensus        15 ~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~----~~s~~~~~   90 (433)
T PF03092_consen   15 FLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPAS----ESSAAIAV   90 (433)
T ss_pred             HHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccc----cchhhhHH
Confidence            3445578888776666666555  45678999999862     4455556666665555555544331    11222222


Q ss_pred             HHHHHHHHHHhcCCCcchhhhhcccC---ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q 011308          387 GGMLLFVLTFSLGAGPVPSLLLSEIF---PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAV  463 (489)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~  463 (489)
                      +.+.+...+.... -.+.-++..|..   |.+ +|...+.......+|++++..+.|.+.+..+++..|.+.+.+..+..
T Consensus        91 ~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~  168 (433)
T PF03092_consen   91 VLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLML  168 (433)
T ss_pred             HHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHH
Confidence            2233333333222 122333444543   444 88889999999999999999999999999999999988888877776


Q ss_pred             HHhhhcccC
Q 011308          464 IYVKRNVME  472 (489)
Q Consensus       464 ~~~~~~~~~  472 (489)
                      +..++..+|
T Consensus       169 ~~~~~~~~e  177 (433)
T PF03092_consen  169 IVALFLLEE  177 (433)
T ss_pred             HHHHHhhhh
Confidence            665555555

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]

Probab=97.61  E-value=0.00078  Score=62.35  Aligned_cols=160  Identities=18%  Similarity=0.138  Sum_probs=97.9

Q ss_pred             ccccchhhhHHHHHhhh---hcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHH
Q 011308          285 RNFGVVFIGSTLFALQQ---LSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGM  361 (489)
Q Consensus       285 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~  361 (489)
                      +++|.+++...+..+.+   +..+..+..+...+++ ..........++.+..++..+.+-|+.||+|-|.....+..+.
T Consensus        41 ~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln  119 (480)
T KOG2563|consen   41 PRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLN  119 (480)
T ss_pred             hhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHH
Confidence            45566666665555544   2233344444444443 0011112666777888899999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          362 AIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR  441 (489)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~  441 (489)
                      +++..+=........++.....+...+..+.+...-.... +..-...--+|+++|+++..+..+.+.+|.+++..+-+.
T Consensus       120 ~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~-lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppi  198 (480)
T KOG2563|consen  120 GIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILG-LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPI  198 (480)
T ss_pred             HHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhc-cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccce
Confidence            9988776655443222111112333333333333222211 212223345788999999999999999999888887776


Q ss_pred             HHHHh
Q 011308          442 LLEQL  446 (489)
Q Consensus       442 l~~~~  446 (489)
                      +..+.
T Consensus       199 lV~~~  203 (480)
T KOG2563|consen  199 LVPSS  203 (480)
T ss_pred             ecCCC
Confidence            66543

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.44  E-value=0.0026  Score=59.22  Aligned_cols=107  Identities=21%  Similarity=0.239  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHH-----HHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHH
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPM-----IIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALY  165 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~-----~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~  165 (489)
                      -+....|.+|..++.--.. +. |+  |++.+...+-.     .+.....-+.++.|..++.-+..|+..|..++.....
T Consensus       284 ~~Y~~~YQ~GVFISRSS~~-~~-ri--r~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~  359 (402)
T PF02487_consen  284 RWYQLLYQLGVFISRSSLP-FF-RI--RRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR  359 (402)
T ss_pred             HHHHHHHHHHHhhhhccee-ee-eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            5667777777665543221 11 33  44433332222     2222233346789999999999999999999999999


Q ss_pred             HHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308          166 VSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK  201 (489)
Q Consensus       166 i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  201 (489)
                      +.|-.++++|..+++..+.+-++|..++.+++-.+-
T Consensus       360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le  395 (402)
T PF02487_consen  360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE  395 (402)
T ss_pred             HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998876543

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=97.17  E-value=0.042  Score=44.02  Aligned_cols=105  Identities=13%  Similarity=0.037  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhh
Q 011308          327 NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSL  406 (489)
Q Consensus       327 ~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (489)
                      ..+......+.+++.+.+.+++|.|+.+.++.++..+-.......         +.+..+....+.+++.+..+.+. ..
T Consensus        43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a~lW~aq-g~  112 (156)
T PF05978_consen   43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP---------NSYTLYPASALLGFGAALLWTAQ-GT  112 (156)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhHHhhHhh-hH
Confidence            334445566777888999999999999998888777554443221         22445666667777776665543 34


Q ss_pred             hhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLR  441 (489)
Q Consensus       407 ~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~  441 (489)
                      ++.+...++.+++-.|+.-.+.+.+.++|..+.-.
T Consensus       113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~  147 (156)
T PF05978_consen  113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFF  147 (156)
T ss_pred             HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            77788888899999999888888887777766543

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK03612 spermidine synthase; Provisional

Probab=96.95  E-value=0.032  Score=54.83  Aligned_cols=132  Identities=17%  Similarity=0.099  Sum_probs=75.5

Q ss_pred             cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHH--HH-HHHHHH----hhhhhH-HHHHHHHHHH
Q 011308           80 DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALP--MI-IGASMS----AITKNL-WGMLLGRLFV  151 (489)
Q Consensus        80 ~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~--~~-i~~~~~----~~~~~~-~~l~~~r~l~  151 (489)
                      -+|-+..+.  +.+.+++..|.++|+.+++++.++--++ ....-+.+  .+ ++..+.    ++...+ ..++..-++.
T Consensus        44 ~~G~s~~~~--~~ii~~fl~glalGs~l~~~~~~~~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  120 (521)
T PRK03612         44 LLGDSVTQF--STVIGLMLFAMGVGALLSKYLLRDAAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLI  120 (521)
T ss_pred             HhCchHHHH--HHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345444444  8999999999999999999887432222 22111111  11 111111    111111 1223344567


Q ss_pred             hhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc-cccchHHHHHHHhH
Q 011308          152 GTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK-EILGWWRICFWVAT  215 (489)
Q Consensus       152 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-~~~~~Wr~~f~~~~  215 (489)
                      ++..|+..|....+..+.. .++-+...|-......+|.++|.++.+++. ...|..+..+++..
T Consensus       121 ~~l~G~~~Pl~~~~~~~~~-~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~  184 (521)
T PRK03612        121 GLLIGMEIPLLMRILQRIR-DQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGS  184 (521)
T ss_pred             HHHHHHHHHHHHHHHHhcc-ccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            7777888888777666543 223456677778888888888888876654 35553455554433

>PF12832 MFS_1_like: MFS_1 like family

Probab=96.92  E-value=0.0056  Score=42.36  Aligned_cols=60  Identities=18%  Similarity=0.272  Sum_probs=45.5

Q ss_pred             hhhcchhHHHHhHHHHHHhcCCCCCchhHHH---HHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308          300 QQLSGINAVFYFSSTVFKNAGVPSDSGNICV---GIANLSGSIIAMILMDKLGRRVLLLGSFL  359 (489)
Q Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (489)
                      ..++......-|++.++++.|.+..+...+.   .+..+++.++.|.++||.++++.......
T Consensus        11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~   73 (77)
T PF12832_consen   11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL   73 (77)
T ss_pred             HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence            3344566677778888899999988855544   46777899999999999998887665443

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.84  E-value=0.081  Score=50.99  Aligned_cols=109  Identities=10%  Similarity=-0.056  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc--------------h--------hHHHHHHHHHH
Q 011308          336 SGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA--------------L--------SLSLGGMLLFV  393 (489)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~--------~~~~~~~~~~~  393 (489)
                      +..++.+++++|++|++............++++.+......+..++              .        .+....+.+..
T Consensus        59 ~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~  138 (472)
T TIGR00769        59 IFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMA  138 (472)
T ss_pred             HHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHH
Confidence            3367789999999999887776666655555555542211111000              0        01111222222


Q ss_pred             HHHhcCCCc-chhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          394 LTFSLGAGP-VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       394 ~~~~~~~~~-~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      -.++....+ +.+.+++|.+..++..+-.++....+++|..+++.+...+.+
T Consensus       139 elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~  190 (472)
T TIGR00769       139 ELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK  190 (472)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223322233 567789999999999999999999999999999999888763

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.83  E-value=0.0094  Score=56.56  Aligned_cols=145  Identities=15%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             HHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHH
Q 011308           56 AIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMS  135 (489)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~  135 (489)
                      ..++..+-+++.-.+...+..+...-|+++...  |..-+...+....+.+...++.+|+|..|.-..+.....+...++
T Consensus       263 as~alalLY~TVLsf~~lmt~yl~~~G~s~~~i--gi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~  340 (432)
T PF06963_consen  263 ASFALALLYFTVLSFGGLMTAYLKSQGYSPSVI--GIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALC  340 (432)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHCCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHH
Confidence            333333333443345556666666669888877  899999999999999999999999999888777765444333322


Q ss_pred             h------hhh----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          136 A------ITK----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       136 ~------~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                      .      -++    +...++.+-++.=+|.=.......-++.|..|+++||...|......++-.++...++-.+.+
T Consensus       341 v~~~~~~~~~~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~~~  417 (432)
T PF06963_consen  341 VVSFWAPGSPFSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIFPR  417 (432)
T ss_pred             HHHHhcCCCCchhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            2      122    334444455555556556777888899999999999999999999988888877777654443

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=96.82  E-value=0.011  Score=55.86  Aligned_cols=118  Identities=15%  Similarity=0.053  Sum_probs=81.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhcccC-CCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChh---hHHHHHHHHHHH
Q 011308          352 VLLLGSFLGMAIAMGVQAIAATSFVS-SSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNR---IRAKAMAVCMAV  427 (489)
Q Consensus       352 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~  427 (489)
                      +.+..+.++..++.+++.+....... .........+++.+...+.+ +.-|....+..|.++++   ++.+.+..+...
T Consensus         2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G-~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~   80 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTG-GIKPNISPFGADQYDEDDDSRRDSFFNWFYWG   80 (372)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHH-CCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccc-cccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence            45667778888888876665543322 12233445555666555555 33456666777877654   577888899999


Q ss_pred             HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308          428 HWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV  470 (489)
Q Consensus       428 ~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      .++|..+++.+.+++.++.||...|.+.++..+++.+..+...
T Consensus        81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~~  123 (372)
T PF00854_consen   81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSGR  123 (372)
T ss_dssp             HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhCC
Confidence            9999999999999999999999999999888888877665443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>KOG3098 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.09  Score=50.13  Aligned_cols=100  Identities=15%  Similarity=0.162  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHhh---cccCchhHhhhhhHHHHHHHHHHhhh------------------hhHHHHHHHHHHHhhcccc
Q 011308           99 GGAFVGSMFSGWIA---DGIGRRRAFQLCALPMIIGASMSAIT------------------KNLWGMLLGRLFVGTGMGI  157 (489)
Q Consensus        99 ~~~~~~~~~~g~l~---dr~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r~l~G~~~~~  157 (489)
                      +|..++..+.+.+.   +++||++.+.++..+..++.++.-.+                  +++...++.-++.|++.+.
T Consensus       290 ~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~  369 (461)
T KOG3098|consen  290 LGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDAC  369 (461)
T ss_pred             HHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHhhHHHH
Confidence            34444445555555   46899999999998888887776542                  2456777788999999999


Q ss_pred             hhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 011308          158 GPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP  199 (489)
Q Consensus       158 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  199 (489)
                      .....+.++.+.+ +++|..+.++...-..++..++......
T Consensus       370 ~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~  410 (461)
T KOG3098|consen  370 FNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY  410 (461)
T ss_pred             HHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            9999999999999 6678888888887777777666555443

>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.33  E-value=0.062  Score=53.89  Aligned_cols=167  Identities=11%  Similarity=-0.018  Sum_probs=109.0

Q ss_pred             hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccC----
Q 011308          305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVS----  377 (489)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  377 (489)
                      ..++...+..+-+..+++...   +....-++..+...+..+...|..|-+.+-.+.++++++.++..+.......    
T Consensus       113 ~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~  192 (735)
T KOG3626|consen  113 VGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYE  192 (735)
T ss_pred             hhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhh
Confidence            355555555655666766655   3334457777777788888888888888889999999998888776321110    


Q ss_pred             ----------C--------------------------CcchhHHHHHHHHHHHHHhcC---CCcchhhhhcccCChhhHH
Q 011308          378 ----------S--------------------------SGALSLSLGGMLLFVLTFSLG---AGPVPSLLLSEIFPNRIRA  418 (489)
Q Consensus       378 ----------~--------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~~  418 (489)
                                .                          ........+.+++..+..+.|   ..++...|+.|.+.+++.+
T Consensus       193 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Sp  272 (735)
T KOG3626|consen  193 LEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSP  272 (735)
T ss_pred             hhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCc
Confidence                      0                          011111111122222222223   4456677999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------c-cchhhHHHHHHHHHHHHHhhhccc
Q 011308          419 KAMAVCMAVHWVINFFVGLLFLRLLEQL------------------G-PLILYTIFGSFCFLAVIYVKRNVM  471 (489)
Q Consensus       419 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~------------------g-~~~~~~~~~~~~~~~~~~~~~~~~  471 (489)
                      ...|+..++..+|-++|-.+++.+.+.+                  | |..-|++.+.+.++..+.++++-+
T Consensus       273 lYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk  344 (735)
T KOG3626|consen  273 LYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPK  344 (735)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence            9999999999998888888877766421                  2 455677788888877777665443

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=96.12  E-value=0.25  Score=44.88  Aligned_cols=127  Identities=28%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchh
Q 011308          326 GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPS  405 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (489)
                      ......+...++.+..|.+.||.|||+....+.....++.+...+...      ...+..+......+.+.+ ...+...
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~-~~~~~~~  116 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGG-GLLPVAS  116 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhH-HHHHHHH
Confidence            445555666777799999999999997776666543333333332221      111222222222222222 2345666


Q ss_pred             hhhcccCCh-hhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH--hccchhhHHHHHHH
Q 011308          406 LLLSEIFPN-RIRAKAMAVCMA-VHWVINFFVGLLFLRLLEQ--LGPLILYTIFGSFC  459 (489)
Q Consensus       406 ~~~~~~~p~-~~~~~~~g~~~~-~~~~g~~~~~~~~g~l~~~--~g~~~~~~~~~~~~  459 (489)
                      .+..|..|+ +.++...+.... ...++..++|.+.+.+...  .+|+..+.......
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         117 ALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            788888886 578998898888 5778888888777666654  34555444444443

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=96.09  E-value=0.0013  Score=60.16  Aligned_cols=111  Identities=14%  Similarity=-0.038  Sum_probs=1.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhccc-----CCCcchhHHHHHHHHHHHHHhcC
Q 011308          326 GNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFV-----SSSGALSLSLGGMLLFVLTFSLG  399 (489)
Q Consensus       326 ~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  399 (489)
                      ....+.++..+|+.+..+..-+. .+|.+.. ..+.=.+..-++.+......     ..-.+.++.++...++++.-|..
T Consensus       187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~-~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWI-LSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHhcchhcceeEecccccccHHH-HHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            45567889999999887743221 2333332 22222222222222211100     00112223333344444443322


Q ss_pred             CCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 011308          400 AGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLL  438 (489)
Q Consensus       400 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~  438 (489)
                       ......+..+..+++.|..+-.+....-.+|-.+|..+
T Consensus       266 -~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l  303 (309)
T PF01733_consen  266 -STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL  303 (309)
T ss_dssp             --HHHH---------------------------------
T ss_pred             -hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23445567777777878777777777777777666655

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=95.93  E-value=0.32  Score=45.70  Aligned_cols=147  Identities=13%  Similarity=0.018  Sum_probs=90.6

Q ss_pred             HHhHHHHHHh-cCCCCCc----hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchh
Q 011308          309 FYFSSTVFKN-AGVPSDS----GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALS  383 (489)
Q Consensus       309 ~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (489)
                      |+..+++.+. .+++...    +.-...-..+...+....+.|.++.|++++.+.+...+...++.+...        ..
T Consensus        24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s--------v~   95 (412)
T PF01770_consen   24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS--------VL   95 (412)
T ss_pred             ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc--------HH
Confidence            3444444443 4554443    222223345566677788999999999999998887777777666533        23


Q ss_pred             HHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cchhhHHHHHHHHH
Q 011308          384 LSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG--PLILYTIFGSFCFL  461 (489)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~  461 (489)
                      ..-+.-++++...+.  -...++++-...|+++.-++.+.......+|..++..++-.+....+  +.....+..+...+
T Consensus        96 ~mq~~q~~yg~~~a~--evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~  173 (412)
T PF01770_consen   96 AMQLMQFFYGLATAA--EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSL  173 (412)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            344445555554432  22344566666788889999999999999998888888877666433  33333333333333


Q ss_pred             HHHH
Q 011308          462 AVIY  465 (489)
Q Consensus       462 ~~~~  465 (489)
                      +.++
T Consensus       174 a~~~  177 (412)
T PF01770_consen  174 ALLI  177 (412)
T ss_pred             HHHH
Confidence            3333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=95.92  E-value=0.002  Score=63.39  Aligned_cols=168  Identities=15%  Similarity=0.017  Sum_probs=1.1

Q ss_pred             hcchhHHHHhHHHHHHhcCCCCCch---hHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCC
Q 011308          302 LSGINAVFYFSSTVFKNAGVPSDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSS  378 (489)
Q Consensus       302 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (489)
                      .....+....++.+-++.++++...   ....-++.++..++..++.+|-.|-+.+-.+.++++++.+++.+........
T Consensus        16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y   95 (539)
T PF03137_consen   16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY   95 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence            3344555555666666677776664   4444577778888888888887777788888888888888877654322110


Q ss_pred             --------------------------------------CcchhHHHHHHHHHHHHHhcC---CCcchhhhhcccCChhhH
Q 011308          379 --------------------------------------SGALSLSLGGMLLFVLTFSLG---AGPVPSLLLSEIFPNRIR  417 (489)
Q Consensus       379 --------------------------------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~~  417 (489)
                                                            .......+..+++.....+.+   ..++..+|+.|.+++++.
T Consensus        96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s  175 (539)
T PF03137_consen   96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS  175 (539)
T ss_dssp             --------------------------------------------------------SSS---------------------
T ss_pred             ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence                                                  000111122222222233333   345667899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------hc-cchhhHHHHHHHHHHHHHhhhc
Q 011308          418 AKAMAVCMAVHWVINFFVGLLFLRLLEQ---------------------LG-PLILYTIFGSFCFLAVIYVKRN  469 (489)
Q Consensus       418 ~~~~g~~~~~~~~g~~~~~~~~g~l~~~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~  469 (489)
                      +...|+......+|-.+|-.+++...+.                     .| |...|++.+.+.++..+.+..+
T Consensus       176 plYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~F  249 (539)
T PF03137_consen  176 PLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFF  249 (539)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             ccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999988888887777765531                     12 4556667777776666655544

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=95.85  E-value=0.17  Score=48.66  Aligned_cols=106  Identities=9%  Similarity=-0.029  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcccCch--hHhhhh--hHHHHHHHHHHhh---------hhhHHHHHHHHHHHhhcccch
Q 011308           92 LVVSTCLGGAFVGSMFSGWIADGIGRR--RAFQLC--ALPMIIGASMSAI---------TKNLWGMLLGRLFVGTGMGIG  158 (489)
Q Consensus        92 ~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~--~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~~~~  158 (489)
                      .....|.++-.+|..+..+. ..-++|  .+.+.+  =+++.-..++|..         -++-+..++..++.|+..|-.
T Consensus       311 i~~~~fNvgD~vGR~~~~~~-~~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~  389 (437)
T TIGR00939       311 ICFLLFNLFDWLGRSLTSKF-MWPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL  389 (437)
T ss_pred             HHHHHHHHHHHHHhhhhhee-EeeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence            55666777777777654432 111223  333222  1223333334432         246667778899999999999


Q ss_pred             hhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhc
Q 011308          159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGL  198 (489)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~  198 (489)
                      ...+..+..+..++++|..+..+...+..+|..+|..++-
T Consensus       390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~  429 (437)
T TIGR00939       390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSF  429 (437)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888887754

>PRK03612 spermidine synthase; Provisional

Probab=95.66  E-value=0.14  Score=50.47  Aligned_cols=49  Identities=27%  Similarity=0.343  Sum_probs=34.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccchhhHHHHHHHHHHHH
Q 011308          416 IRAKAMAVCMAVHWVINFFVGLLFLRLLE-QLGPLILYTIFGSFCFLAVI  464 (489)
Q Consensus       416 ~~~~~~g~~~~~~~~g~~~~~~~~g~l~~-~~g~~~~~~~~~~~~~~~~~  464 (489)
                      ..+...|-......+|+++|+.+.+.+.- ..|......+.+.+.++.++
T Consensus       142 ~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~  191 (521)
T PRK03612        142 HLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL  191 (521)
T ss_pred             chhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            35677888888999999999999887654 67765555555555544443

>KOG3097 consensus Predicted membrane protein [Function unknown]

Probab=95.64  E-value=1.6  Score=39.35  Aligned_cols=99  Identities=17%  Similarity=0.198  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCc--cc
Q 011308           97 CLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPA--YV  174 (489)
Q Consensus        97 ~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~  174 (489)
                      ..+..+.++++.+.+..++|-|..++++.......- ..=+-+.+..++-.-.+.|++.+..+..--+++++.-.+  ++
T Consensus        67 ~y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyi-A~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~  145 (390)
T KOG3097|consen   67 LYLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYI-AANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQNYANQ  145 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HhhcchhHHhhccHHHhhccccccccccCcceecHHHHHHHHh
Confidence            344556677777799999999999988877665432 222346788899999999999999887766666655432  22


Q ss_pred             h-------------hhHHHHHHHHHHHHHHHHHHh
Q 011308          175 R-------------GAYGSSTQIAACLGILVALFV  196 (489)
Q Consensus       175 r-------------~~~~~~~~~~~~~G~~i~~~~  196 (489)
                      |             +..+.++..+..+|..++..+
T Consensus       146 ~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli  180 (390)
T KOG3097|consen  146 RGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI  180 (390)
T ss_pred             hhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence            3             334555555666665555544

>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs

Probab=93.98  E-value=0.019  Score=52.57  Aligned_cols=108  Identities=15%  Similarity=0.182  Sum_probs=3.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhh--HHHHHHHHHH----------hhhhhHHHHHHHHHHHhhcccch
Q 011308           92 LVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCA--LPMIIGASMS----------AITKNLWGMLLGRLFVGTGMGIG  158 (489)
Q Consensus        92 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~--~~~~i~~~~~----------~~~~~~~~l~~~r~l~G~~~~~~  158 (489)
                      .....|.++-.+|..+.++.-=+ -.+|++...+.  +++.-..++|          .+.+|-+..++.-++.|+..|-.
T Consensus       186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl  265 (309)
T PF01733_consen  186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL  265 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence            34667788888888776653211 13444443221  2222222222          12345567778899999999999


Q ss_pred             hhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcc
Q 011308          159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP  199 (489)
Q Consensus       159 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~  199 (489)
                      .+....+..+..++++|..+..+......+|..+|..++-.
T Consensus       266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~  306 (309)
T PF01733_consen  266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFL  306 (309)
T ss_dssp             -HHHH------------------------------------
T ss_pred             hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888888888888776643

Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.11  E-value=0.75  Score=32.32  Aligned_cols=67  Identities=16%  Similarity=0.132  Sum_probs=52.4

Q ss_pred             HHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhh
Q 011308          307 AVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAAT  373 (489)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (489)
                      .+...+|...++.+++...   ......++.++|.+...++.++.++++.+..+.+...+....+.+...
T Consensus        10 ayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~   79 (85)
T PF06779_consen   10 AYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS   79 (85)
T ss_pred             HHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3444678888888887766   556667899999999999888888888888888888888877776543

Note that many members are hypothetical proteins.

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=91.73  E-value=6  Score=38.71  Aligned_cols=42  Identities=12%  Similarity=-0.103  Sum_probs=38.0

Q ss_pred             chhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          403 VPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       403 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      +.+.+++|..+.++..+..++.....++|.++++.+...+.+
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~  205 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS  205 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457789999999999999999999999999999999888777

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]

Probab=91.34  E-value=6.6  Score=39.31  Aligned_cols=138  Identities=13%  Similarity=0.100  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhcccCC--------------C-cchhHHHHHHHHHH
Q 011308          330 VGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFVSS--------------S-GALSLSLGGMLLFV  393 (489)
Q Consensus       330 ~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-~~~~~~~~~~~~~~  393 (489)
                      ..-......+.+++++|-+ ||-+.+..+.++..++..++.+........              . ......+....+..
T Consensus        82 f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~l  161 (571)
T KOG1237|consen   82 FGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYL  161 (571)
T ss_pred             HhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHH
Confidence            3344456667889999985 788888888777777766555544322110              0 11111122222222


Q ss_pred             HHHhc-CCCcchhhhhcccCC----hhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHh
Q 011308          394 LTFSL-GAGPVPSLLLSEIFP----NRIR--AKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYV  466 (489)
Q Consensus       394 ~~~~~-~~~~~~~~~~~~~~p----~~~~--~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  466 (489)
                      ...+. +.-|....+-+|.++    .+.+  ..-+.......+.|..++-.+.-+.-++.+|...|.+..++.+++.++.
T Consensus       162 ia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  162 IALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             heeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            22222 234555566677766    2223  3667778888888998888888888788899999988888877776655


Q ss_pred             h
Q 011308          467 K  467 (489)
Q Consensus       467 ~  467 (489)
                      .
T Consensus       242 ~  242 (571)
T KOG1237|consen  242 L  242 (571)
T ss_pred             H
Confidence            3

>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]

Probab=90.92  E-value=13  Score=35.03  Aligned_cols=21  Identities=19%  Similarity=0.104  Sum_probs=10.7

Q ss_pred             hhhhcccCChhhHHHHHHHHHH
Q 011308          405 SLLLSEIFPNRIRAKAMAVCMA  426 (489)
Q Consensus       405 ~~~~~~~~p~~~~~~~~g~~~~  426 (489)
                      +...++ +|+++....++-.+.
T Consensus       139 ~G~a~~-~P~~ytqavm~G~a~  159 (406)
T KOG1479|consen  139 YGLAGL-FPSEYTQAVMSGQAL  159 (406)
T ss_pred             hhhhhc-CCHHHHHHHHhcchh
Confidence            334444 587766555543333

>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]

Probab=90.69  E-value=0.31  Score=45.82  Aligned_cols=130  Identities=12%  Similarity=-0.023  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS  170 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (489)
                      .|-..++.+...+.+....++.||+|-|+.+..+...+.++..+.+...+.+....-|-..|+-.+....+-...++++.
T Consensus       335 ~~GL~ins~~lgi~S~~~~~l~~~~g~r~~y~~~~~~f~~~~~~~gl~~~~~~~~~~~~~~G~~~~~~~~~p~~l~~~y~  414 (498)
T KOG0637|consen  335 CLGLMLNSIVLGIYSLLVEKLSRKFGTRKRYWGGVNAFGLATGLAGLVLNTYVVLSHRSTAGILSSPLLTVPYGALALYA  414 (498)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCcceEEeehhHHHHHHHHHHhhhhhHHHHHHHHhhcceeecchhcccHHHHHHHH
Confidence            34466677777799999999999999888888888888888888888888888888888888655555444444443332


Q ss_pred             Cc-----------------------cchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHH
Q 011308          171 PA-----------------------YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAF  220 (489)
Q Consensus       171 ~~-----------------------~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~  220 (489)
                      ..                       ..+|...|+.+....+..++.....|.+.+..|.=+.+-...+..++.
T Consensus       415 ~~g~~~a~t~~~pf~~~s~~~~~sg~g~G~~~gvln~~I~ipQvivs~~~Gp~~~~~G~~~~~~~~~~a~s~~  487 (498)
T KOG0637|consen  415 ILGIPLAITFSIPFALASIEIGNSGLGQGLDLGVLNCAIVIPQVLVSLGLGPLDQLFGGGNLPAFVSGAVALL  487 (498)
T ss_pred             HhCCccccccccccccccccccCccCCCCceeeeeeeeeeehhheeeccccchhhhcCCcchhHHHHHHHHHH
Confidence            11                       124566677777777777777666677666655434444444444333

>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]

Probab=90.40  E-value=1.9  Score=39.69  Aligned_cols=114  Identities=11%  Similarity=0.004  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHH------Hhh------hhhHHHHHHHHHHHhhcccch--hhhHHHH-
Q 011308          101 AFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM------SAI------TKNLWGMLLGRLFVGTGMGIG--PAVAALY-  165 (489)
Q Consensus       101 ~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~------~~~------~~~~~~l~~~r~l~G~~~~~~--~~~~~~~-  165 (489)
                      ..+..++.|...|+..|+|++...+.+--++..+      ..+      +.++..+..+-++.-...+..  ...+.++ 
T Consensus        76 ~lvlg~ivGq~vDg~sr~Kvi~~~L~lqNlSv~vagglvi~~l~~~~~~~~t~pv~t~~lvLa~~i~aI~~Las~A~~i~  155 (503)
T KOG2601|consen   76 QLVLGPIVGQWVDGMSRVKVIQTWLLLQNLSVIVAGGLVITLLVHKDLKSATSPVFTVCLVLANLIAAIAVLASLAGTIL  155 (503)
T ss_pred             HHhhHHHHHHHhcchhHHHHHHHHHhhccHHHHHHHHHHhhheeecchhcccccHHHHHHHHHHHHHHHHHHHHhhheEE
Confidence            3466677889999999999987776543332222      222      235555555554443322221  1111111 


Q ss_pred             -HHhcC----CccchhhH---HHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhH
Q 011308          166 -VSEVS----PAYVRGAY---GSSTQIAACLGILVALFVGLPAKEILGWWRICFWVAT  215 (489)
Q Consensus       166 -i~~~~----~~~~r~~~---~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~  215 (489)
                       -.||.    ..+.+...   .+..-..-.....+.|.+.|.+.+..+ -|..-...+
T Consensus       156 i~RDWvvV~s~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvs-l~~~~g~f~  212 (503)
T KOG2601|consen  156 IERDWVVVMSEGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVS-LRASAGTFA  212 (503)
T ss_pred             ecccEEEEecCCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeec-hhhhhhhhH
Confidence             12332    22333333   344455556667889999999988776 455333333

>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]

Probab=88.88  E-value=8.1  Score=33.98  Aligned_cols=134  Identities=12%  Similarity=0.084  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcccCch--hHhhhhhHHHHHHHHHHhh----hh---hHHHHHHHHHHHhhcccchhh
Q 011308           90 EGLVVSTCLGGAFVGSMFSGWIADGIGRR--RAFQLCALPMIIGASMSAI----TK---NLWGMLLGRLFVGTGMGIGPA  160 (489)
Q Consensus        90 ~g~~~s~~~~~~~~~~~~~g~l~dr~Grr--~~l~~~~~~~~i~~~~~~~----~~---~~~~l~~~r~l~G~~~~~~~~  160 (489)
                      .|.+.+.++++..+|+-+..++..|-.+|  ..+.+..+..++...+..+    ++   +...=+++-.+.-.+.|..+|
T Consensus       284 hGfiFatFMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlfwP  363 (454)
T KOG4332|consen  284 HGFIFATFMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLFWP  363 (454)
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhcch
Confidence            38999999999999999998988876554  3444444444433333222    22   122223444445566788999


Q ss_pred             hHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHH
Q 011308          161 VAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALF  224 (489)
Q Consensus       161 ~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~  224 (489)
                      ....+-+++.|++.|...+.++..-.++=..++-..--.-....+ -|..|-+..+...+..+.
T Consensus       364 SimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~-tr~mf~icS~~~~~a~i~  426 (454)
T KOG4332|consen  364 SIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTT-TRNMFGICSAFLFVASIL  426 (454)
T ss_pred             HHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccc-cchhhhhhHHHHHHHHHH
Confidence            999999999999999988887765544322221111000001122 467777776665555443

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=88.45  E-value=2.4  Score=37.94  Aligned_cols=142  Identities=17%  Similarity=0.130  Sum_probs=91.3

Q ss_pred             HHHHHHHhhhhccccccccchh--hhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchh------Hhhhh
Q 011308           53 VLVAIISSFLFGYHLGVVNETL--ESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR------AFQLC  124 (489)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~------~l~~~  124 (489)
                      .+-++..++..++.+..+.+.+  |. .+.+..+.+. |.=|....|.+|..++     +=+-|+=+-+      ++..-
T Consensus       253 MvPL~~VY~~EY~INQGl~ell~F~c-~~g~sls~~s-qYRwyqvlYQlGVFiS-----RSS~~~~~~p~l~~LailQ~v  325 (409)
T KOG3880|consen  253 MVPLALVYFAEYFINQGLAELLLFPC-SHGFSLSKDS-QYRWYQVLYQLGVFIS-----RSSINLFTMPYLWLLAILQFV  325 (409)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhEEecc-ccCCccchhh-cchhhheeeeeeEEEE-----eccceEEechHHHHHHHHHHH
Confidence            3445555555555443333321  22 3444444322 2257788887764432     1122222211      12222


Q ss_pred             hHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc
Q 011308          125 ALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK  201 (489)
Q Consensus       125 ~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~  201 (489)
                      .+++.+...+..+.++++..++.-+..|+-.|..++...--+.+-.++++|-.+++....+-++|..++..++-.+-
T Consensus       326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh  402 (409)
T KOG3880|consen  326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH  402 (409)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence            34444555566678899999999999999889888888888888889999999999999999999999988876554

>KOG2881 consensus Predicted membrane protein [Function unknown]

Probab=87.73  E-value=18  Score=31.42  Aligned_cols=32  Identities=19%  Similarity=0.065  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHH
Q 011308          332 IANLSGSIIAMILMDKLGRRVLLLGSFLGMAI  363 (489)
Q Consensus       332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~  363 (489)
                      ++..+..+.+-+++.|+..|.+.+.+.+++.+
T Consensus       251 lCT~lAVigGk~lAskIS~rtVt~~ggi~Fi~  282 (294)
T KOG2881|consen  251 LCTGLAVIGGKYLASKISVRTVTLIGGILFII  282 (294)
T ss_pred             HHHHHHHhhhHHHhhhheeEEEEEecchhHHH
Confidence            45555555666778899888776665554443

>COG3202 ATP/ADP translocase [Energy production and conversion]

Probab=85.70  E-value=33  Score=33.30  Aligned_cols=112  Identities=11%  Similarity=-0.069  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccC---C-----------Cc-ch-h-------HHHHHH
Q 011308          333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVS---S-----------SG-AL-S-------LSLGGM  389 (489)
Q Consensus       333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------~~-~~-~-------~~~~~~  389 (489)
                      +.++..++..++.+++.+.++...........++++++......+   +           .+ .. |       +.....
T Consensus        74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~  153 (509)
T COG3202          74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF  153 (509)
T ss_pred             HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence            345566667778888888877665555555444444443321110   0           01 00 0       111112


Q ss_pred             HHHHHHHhcCCC-cchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          390 LLFVLTFSLGAG-PVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE  444 (489)
Q Consensus       390 ~~~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~  444 (489)
                      .+..=.++.... -+.+...+|....++..+-+++.+...+++..++..+..++.+
T Consensus       154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k  209 (509)
T COG3202         154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK  209 (509)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            222222222211 2446678899999999999999999999999999998888765

>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]

Probab=83.96  E-value=1.6  Score=38.90  Aligned_cols=134  Identities=13%  Similarity=0.053  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS  170 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (489)
                      |.+.-+-.+-..+..+.+-...||+---+-..+..++.+.+.++.+++++.++-+.+-.+..++.|.....-.++-+. +
T Consensus        65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~-Y  143 (409)
T KOG3880|consen   65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR-Y  143 (409)
T ss_pred             chhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc-C
Confidence            344444445555666667777888655444556677788888999999999998888888888877766554444333 3


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHhhcccccc--cchHHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308          171 PAYVRGAYGSSTQIAACLGILVALFVGLPAKEI--LGWWRICFWVATIPAAFLALFMEF-CAE  230 (489)
Q Consensus       171 ~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~--~~~Wr~~f~~~~~~~~~~~~~~~~-~~e  230 (489)
                      ++.    ..+-++.+.+...++|..--..+.+.  .. -|...++...+-++.+...++ +++
T Consensus       144 ~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~~~s-pk~Tlli~l~lP~lfa~~yf~lL~~  201 (409)
T KOG3880|consen  144 PSI----VIAGWSSGTGGAGLIGASSYAFLTSWANLS-PKSTLLIMLFLPALFAFAYFFLLKS  201 (409)
T ss_pred             CCc----eeccccCCCCcchhhhhhHHHHHhhhcCCC-hhhHHHHHHHHHHHHHHHHHheeCC
Confidence            322    23333334333344444333333331  22 366666655544444444444 443

>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]

Probab=83.38  E-value=22  Score=33.27  Aligned_cols=31  Identities=10%  Similarity=0.003  Sum_probs=18.3

Q ss_pred             cccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011308          409 SEIFPNRIRAKAMAVCMAVHWVINFFVGLLF  439 (489)
Q Consensus       409 ~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~  439 (489)
                      .....+++.|-+........+.|.+++-.++
T Consensus       159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~if  189 (510)
T KOG3574|consen  159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVF  189 (510)
T ss_pred             HHhcCHhhcCchhHHHHHHHhhhHHhhccee
Confidence            3444556677666666666666666665543

>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS)

Probab=80.86  E-value=12  Score=32.86  Aligned_cols=100  Identities=12%  Similarity=0.080  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcc-cCchhHhh----hhhHHHHHHHHHHhh-h----hhHHHHHHHHHHHhhcccchhhh
Q 011308           92 LVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQ----LCALPMIIGASMSAI-T----KNLWGMLLGRLFVGTGMGIGPAV  161 (489)
Q Consensus        92 ~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~~~~~~~  161 (489)
                      ...-.+..|+.+|....|++... +-||+.+.    .+++++.+..+.... .    .++..+++.-++.|++.=+..++
T Consensus       145 ~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~V  224 (267)
T PF07672_consen  145 IFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGV  224 (267)
T ss_pred             HHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHH
Confidence            44455666667777777877764 55565543    334444444444211 1    24667888888888875444444


Q ss_pred             HHHHHHhcCCccchhhHHHHHHHHHHHHHHH
Q 011308          162 AALYVSEVSPAYVRGAYGSSTQIAACLGILV  192 (489)
Q Consensus       162 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i  192 (489)
                      ...+-.| ++..++.+..-.++..+++|.++
T Consensus       225 iL~lPhE-yK~~~pk~ig~~Fg~iWGfGY~~  254 (267)
T PF07672_consen  225 ILNLPHE-YKGYNPKKIGIQFGLIWGFGYIF  254 (267)
T ss_pred             HhcChhh-hcCCCcceehhHHHHHHHHHHHH
Confidence            3333333 23333333434444555666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	489
4gby_A	491	The Structure Of The Mfs (Major Facilitator Superfa		2e-36

>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491

Iteration: 1
 Score =  150 bits (379), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/475 (27%), Positives = 202/475 (42%), Gaps = 48/475 (10%)
Query: 54  LVAIISSFLFGYHLGVVNETLESISL------DLGFSGSTMAEGLVVSTCLGGAFVGSMF 107
           LVA +   LFGY   V++ T+ES++       +L  S +    G  V++ L G  +G   
Sbjct: 15  LVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGAL 74
Query: 108 SGWIADGIGRRRAFQLCALPMIIGASMSA--------------ITKNLWG----MLLGRL 149
            G+ ++  GRR + ++ A+   I    SA              +   L G     ++ R+
Sbjct: 75  GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRI 134
Query: 150 FVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVG--LPAKEILGW- 206
             G G+G+   ++ +Y++E++PA++RG   S  Q A   G L+   V   +       W 
Sbjct: 135 IGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWL 194
Query: 207 ----WRICFWVATIPAAFLALFMEFCAESPHWLFKXXXXXXXXXXXXXXXXXXHVKYSMA 262
               WR  F    IPA    + +    ESP WL                        ++ 
Sbjct: 195 NTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQ 254
Query: 263 ELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVP 322
           E+  S         +          GV+ IG  L   QQ  GIN V Y++  VFK  G  
Sbjct: 255 EIKHSLDHGRKTGGRLLMF----GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310
Query: 323 SDSG---NICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAXXXXXXXX 379
           +D      I VG+ NL+ +++A++ +DK GR+ L +   LGMAI M     +        
Sbjct: 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGM----FSLGTAFYTQ 366
Query: 380 XXXXXXXXXXXXXXXXFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG--- 436
                           F++  GPV  +LLSEIFPN IR KA+A+ +A  W+ N+FV    
Sbjct: 367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTF 426
Query: 437 ---XXXXXXXXXXXXXILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALLPQ 488
                             Y I+G    LA +++ + V ETKGKTL+E+E    P+
Sbjct: 427 PMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPE 481
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	489
2cfq_A	417	Lactose permease; transport, transport mechanism,	5e-07
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	3e-05
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	6e-04

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 54/395 (13%), Positives = 104/395 (26%), Gaps = 47/395 (11%)

Query: 81  LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRR--------AFQLCALPMIIGA 132
              S S    G++ +     + +     G ++D +G R+           + A   I   
Sbjct: 38  NHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF 95

Query: 133 SMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILV 192
                   L G ++G +++G     G      ++ +VS       +G +         L 
Sbjct: 96  GPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNF-EFGRARMFGCVGWALG 154

Query: 193 ALFVGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLF 252
           A  VG+         +  FW+ +  A  LA+ + F                A      L 
Sbjct: 155 ASIVGIMFTI---NNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLK 211

Query: 253 GGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFY-F 311
             L                         L              +         +  F  F
Sbjct: 212 LALE------------------------LFRQPKL-WFLSLYVIGVSCTYDVFDQQFANF 246

Query: 312 SSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIA 371
            ++ F      +        +  L      M     +  R+    + L     M V+ I 
Sbjct: 247 FTSFFATGEQGTRVFGYVTTMGELLN-ASIMFFAPLIINRIGGKNALLLAGTIMSVR-II 304

Query: 372 ATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI 431
            +SF +S+  + +      L +              ++  F  R  A    VC      +
Sbjct: 305 GSSFATSALEVVIL---KTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQL 360

Query: 432 NFFVGLLFL-RLLEQLGPLILYTIFGSFCFLAVIY 465
                 +    + E +G    Y + G       + 
Sbjct: 361 AMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 49/358 (13%), Positives = 101/358 (28%), Gaps = 41/358 (11%)

Query: 80  DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ----LCALPMIIGASMS 135
           + GFS   +  G  +S             G ++D    R        L A  M+    + 
Sbjct: 56  EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 113

Query: 136 AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALF 195
             T ++  M +     G   G+G       +        RG   S    A  +G  +   
Sbjct: 114 WATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPL 173

Query: 196 VGLPAKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGL 255
           + L        W    ++    A  +ALF              G     E + +      
Sbjct: 174 LFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ--SCGLPPIEEYKND------ 225

Query: 256 HVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSST- 314
              Y      K+E+   A  +    ++  +    + I            +  + Y     
Sbjct: 226 ---YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIA--------NVFVYLLRYGILDW 274

Query: 315 ----VFKNAGVPSDSGNICVGI---ANLSGSIIAMILMDKL--GRRVLLLGSFLGMAIAM 365
               + +      D  +    +   A + G+++   + DK+  G R      F+ +    
Sbjct: 275 SPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIA 334

Query: 366 GVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV 423
            +      +   +   + + + G L++     +G          E+ P +    A   
Sbjct: 335 TIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL------HALELAPKKAAGTAAGF 386

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* Length = 438

 Score = 41.1 bits (96), Expect = 6e-04
 Identities = 44/324 (13%), Positives = 92/324 (28%), Gaps = 14/324 (4%)

Query: 83  FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASM---SAITK 139
           F+ +    GL+ S    G F+  + +G +   +  +           +GA++   +A   
Sbjct: 56  FTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIM 115

Query: 140 NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLP 199
           N    L+G   +  G+G     A  +V+ + P        +  Q     G ++A+  G  
Sbjct: 116 NYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175

Query: 200 AKEILGWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKY 259
                   +    +  +    L+ +      S    +           +  L   L +  
Sbjct: 176 LILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYM------IIVAIVLLVALLIMLT 229

Query: 260 SMAELSKSERGDEADAVKFSELISPRNFGVVFIGS-TLF---ALQQLSGINAVFYFSSTV 315
               L      D       + L                F     Q       + Y    +
Sbjct: 230 KFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEI 289

Query: 316 FKNAGVPSDSGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSF 375
                  + +      +    G      L+ +     +L   +  +A+A+ + +  A   
Sbjct: 290 PGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAA-YALIAMALCLISAFAGGH 348

Query: 376 VSSSGALSLSLGGMLLFVLTFSLG 399
           V        S    + +   FSLG
Sbjct: 349 VGLIALTLCSAFMSIQYPTIFSLG 372

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	489
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	100.0
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	100.0
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	100.0
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	100.0
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	100.0
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.97
2xut_A	524	Proton/peptide symporter family protein; transport	99.97
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.56
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.39
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.37
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.33
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.29
2xut_A	524	Proton/peptide symporter family protein; transport	99.26
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.25

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=100.00  E-value=1.9e-46  Score=367.56  Aligned_cols=434  Identities=32%  Similarity=0.517  Sum_probs=341.5

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccc------cchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSG------STMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRA  120 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~------~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~  120 (489)
                      ++.+.+.++.+++.++.++|.+.++..+|.+.++++.+.      ++...|++.+++.+|..+|++++|+++||+|||++
T Consensus         8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~   87 (491)
T 4gc0_A            8 SYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS   87 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            444566666778889999999999999999988875432      22335899999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHh------------------hhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHH
Q 011308          121 FQLCALPMIIGASMSA------------------ITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSST  182 (489)
Q Consensus       121 l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~  182 (489)
                      +.++.+++.+++++++                  +++|+++++++|+++|+|.|...+....+++|+.|+++|++..++.
T Consensus        88 l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~  167 (491)
T 4gc0_A           88 LKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFN  167 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhh
Confidence            9999999999999998                  4789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhccccccc-------chHHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCC
Q 011308          183 QIAACLGILVALFVGLPAKEIL-------GWWRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGL  255 (489)
Q Consensus       183 ~~~~~~G~~i~~~~~~~l~~~~-------~~Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  255 (489)
                      +.+..+|.++++.++..+....       .+||+.+.+..++.++..+..+++||+|+|+..+++.+++++.+++..+..
T Consensus       168 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~  247 (491)
T 4gc0_A          168 QFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNT  247 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCc
Confidence            9999999999988876654322       139999999999988888888899999999999999999998887765433


Q ss_pred             CchHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCc---hhHHHHH
Q 011308          256 HVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDS---GNICVGI  332 (489)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  332 (489)
                      ....+..+..+....++ +.......   ...+..........+..+.....+.+|.+.+.+..+.+...   .....++
T Consensus       248 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (491)
T 4gc0_A          248 LATQAVQEIKHSLDHGR-KTGGRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGV  323 (491)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHTTHHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhh-hhhhHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHH
Confidence            22222221111111111 11111111   22333445555556666677888888899888887766544   4456678


Q ss_pred             HHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccC
Q 011308          333 ANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIF  412 (489)
Q Consensus       333 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  412 (489)
                      ..+++.++++++.||+|||+.+..+.....++++.+......    ....+..+....++..+++.+..++.+.+.+|++
T Consensus       324 ~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~f  399 (491)
T 4gc0_A          324 INLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT----QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIF  399 (491)
T ss_dssp             HHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc----ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhC
Confidence            888999999999999999999998888887777666554332    2223344555666667777788888888999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHHHHHhhC
Q 011308          413 PNRIRAKAMAVCMAVHWVINFFVGLLFLRLLE------QLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQEIEMALL  486 (489)
Q Consensus       413 p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  486 (489)
                      |++.|+++.|+.+.++++++++++.+.+.+.+      ..+....|++++++++++.++.+++.||||++++||+|+.++
T Consensus       400 Pt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~  479 (491)
T 4gc0_A          400 PNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE  479 (491)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence            99999999999999999999999988876644      345667888999999999999999999999999999998776


Q ss_pred             CC
Q 011308          487 PQ  488 (489)
Q Consensus       487 ~~  488 (489)
                      ++
T Consensus       480 ~~  481 (491)
T 4gc0_A          480 PE  481 (491)
T ss_dssp             --
T ss_pred             CC
Confidence            54

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=100.00  E-value=5.2e-39  Score=310.13  Aligned_cols=371  Identities=13%  Similarity=0.086  Sum_probs=287.2

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      ++++..+..+++..+..+++.....+.+|.+.+++|++.++.  |++.+.+.+++.++++++|+++||+|||++++.+.+
T Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~   99 (438)
T 3o7q_A           22 RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQA--GLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLF   99 (438)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHH
Confidence            344556667777788888888899999999999999988887  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH---hhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccc-c
Q 011308          127 PMIIGASMS---AITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAK-E  202 (489)
Q Consensus       127 ~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~-~  202 (489)
                      +.+++.+++   +++++++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+. +
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~  179 (438)
T 3o7q_A          100 LYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILS  179 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred             HHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999   889999999999999999999999999999999999999999999999999999999999999998 5


Q ss_pred             ccch------------------------HHHHHHHhHHHHHHHHHHhhc--ccCChhHHHhcCChHHHHHHHHHHhCCCC
Q 011308          203 ILGW------------------------WRICFWVATIPAAFLALFMEF--CAESPHWLFKRGRGAEAEAELERLFGGLH  256 (489)
Q Consensus       203 ~~~~------------------------Wr~~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (489)
                      ..+.                        ||+.|++.++..++..+..++  .||+++.   +                  
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~------------------  238 (438)
T 3o7q_A          180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---N------------------  238 (438)
T ss_dssp             SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---C------------------
T ss_pred             ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---c------------------
Confidence            5554                        899998877776665554433  3554320   0                  


Q ss_pred             chHHHHHHhhhhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHH-HHhc-CCCCCc---hhHHHH
Q 011308          257 VKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTV-FKNA-GVPSDS---GNICVG  331 (489)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~---~~~~~~  331 (489)
                               ++++++++...+++++++++.++...+..++...    .......+.+.+ +++. +.+...   ......
T Consensus       239 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  305 (438)
T 3o7q_A          239 ---------HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVG----AQTACWSYLIRYAVEEIPGMTAGFAANYLTGTM  305 (438)
T ss_dssp             ---------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             ---------cccccccchhhhHHHHHhChHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhccCCcchhHHHHHHHHHH
Confidence                     0111122334567788888887776666555444    334444556666 5554 666544   555667


Q ss_pred             HHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhccc
Q 011308          332 IANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEI  411 (489)
Q Consensus       332 ~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (489)
                      ++.+++.++.+++.||++||+.+..+.++..++.+++.+....        + ......+.+.+.+ ...+....+..|.
T Consensus       306 ~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~g~~~~-~~~~~~~~~~~~~  375 (438)
T 3o7q_A          306 VCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGH--------V-GLIALTLCSAFMS-IQYPTIFSLGIKN  375 (438)
T ss_dssp             HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHH--------H-HHHHHHHHHHHHT-THHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCc--------H-HHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence            8888999999999999999999988888777776655543221        1 2333344444433 3345667777888


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHH
Q 011308          412 FPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG-PLILYTIFGSFCFLAVIY  465 (489)
Q Consensus       412 ~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~  465 (489)
                      +|++ ++.+.++.. ...+++.++|.+.|.+.+..| +...|.+.+++.++..++
T Consensus       376 ~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          376 LGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             CGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             cccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            8866 888888877 678999999999999999999 888888766555544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=100.00  E-value=5.5e-40  Score=318.20  Aligned_cols=398  Identities=14%  Similarity=0.078  Sum_probs=297.0

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +++++.+..++++.+...++...+.+.+|.+.+++ .+.++.  |++.+++.++..++++++|+++||+|||+++..+.+
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~  100 (451)
T 1pw4_A           24 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI  100 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHH--HHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence            34567777888888999999999999999999999 888887  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh----hhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          127 PMIIGASMSAI----TKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       127 ~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                      +.+++.+++++    ++|++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+++.+.+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~  180 (451)
T 1pw4_A          101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  180 (451)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999    99999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             ccchHHHHHHHhHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhh
Q 011308          203 ILGWWRICFWVATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSEL  281 (489)
Q Consensus       203 ~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      ..+.||+.|++.+++.++..+. .+++||+|+....+++.+..+          .  .+.+...+.+++....+...++.
T Consensus       181 ~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~  248 (451)
T 1pw4_A          181 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN----------D--YPDDYNEKAEQELTAKQIFMQYV  248 (451)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC----------C---------------CCTHHHHHHT
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc----------c--ccccchhhhhcccccccchHHHH
Confidence            5543899999998887766554 455788775321111110000          0  00000000011111122224667


Q ss_pred             hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhh--CCchhHH
Q 011308          282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKL--GRRVLLL  355 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~  355 (489)
                      ++++.++...+..++..+    .......+.+.++++ .+.+...   .....+++.+++.++.+++.||+  ++|+.+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~  324 (451)
T 1pw4_A          249 LPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  324 (451)
T ss_dssp             SSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHH
Confidence            777777655555444443    344556667777766 5666554   55566788899999999999999  8888877


Q ss_pred             HHHHHHH-HHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHH-HHH
Q 011308          356 GSFLGMA-IAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWV-INF  433 (489)
Q Consensus       356 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~  433 (489)
                      .+..+.. ++++++.+.      ...+.+.......+.+.+.+. ..+....+..|.+|++.|+++.|+.+...++ |..
T Consensus       325 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~  397 (451)
T 1pw4_A          325 VFFMTLVTIATIVYWMN------PAGNPTVDMICMIVIGFLIYG-PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSV  397 (451)
T ss_dssp             HHHHHHHHHHHHHTTSC------CTTCHHHHHHHHHHHHHHHTH-HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh------cccCHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHH
Confidence            6665554 443333221      112233333344444443332 2344456889999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcc
Q 011308          434 FVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNV  470 (489)
Q Consensus       434 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  470 (489)
                      ++|.+.|.+.+..|+...|.+.+++++++.++.+...
T Consensus       398 ~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          398 AASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998888888776665443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=100.00  E-value=3.3e-35  Score=287.74  Aligned_cols=417  Identities=15%  Similarity=0.097  Sum_probs=261.0

Q ss_pred             HHHHHhhhhccccccccchhh-hhhhc-----ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cCchhHhhhhhHH
Q 011308           55 VAIISSFLFGYHLGVVNETLE-SISLD-----LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADG-IGRRRAFQLCALP  127 (489)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~-~i~~~-----~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~Grr~~l~~~~~~  127 (489)
                      .+++..+...+......+.++ .+.++     +|.+.++.  |++.+.+.++..++++++|+++|| +|||+++..+.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~   94 (491)
T 4aps_A           17 TLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATA--ASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL   94 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            333344444444433433333 34444     89887777  999999999999999999999999 8999999999999


Q ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccc--hhhHHHHHHHHHHHHHHHHHHhhcccccccc
Q 011308          128 MIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYV--RGAYGSSTQIAACLGILVALFVGLPAKEILG  205 (489)
Q Consensus       128 ~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~  205 (489)
                      .+++.+++++++|++.++++|+++|++.+...+...+++.|++|+++  |+.++++++.+.++|..++|.+++.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g  174 (491)
T 4aps_A           95 IMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAG  174 (491)
T ss_dssp             HHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999999999999999999999999999999999999999999988  7788888999999999999999999999888


Q ss_pred             hHHHHHHHhHHHHHHHHHHhhcc-cCChh----HHHhcCChHHHHHHHHH----------------HhCCCCchHHHHHH
Q 011308          206 WWRICFWVATIPAAFLALFMEFC-AESPH----WLFKRGRGAEAEAELER----------------LFGGLHVKYSMAEL  264 (489)
Q Consensus       206 ~Wr~~f~~~~~~~~~~~~~~~~~-~e~~~----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~  264 (489)
                       ||+.|++.++..++..+..++. ++..+    ....+.+.++.++..+.                ..+..+.+......
T Consensus       175 -~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~  253 (491)
T 4aps_A          175 -YHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLL  253 (491)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhh
Confidence             9999999877766655544332 21110    00001112222221111                01111110000000


Q ss_pred             hh---------hhhccchhhhhHHhhhccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCCchhHHHHHHHH
Q 011308          265 SK---------SERGDEADAVKFSELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANL  335 (489)
Q Consensus       265 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (489)
                      ..         .....++......+..+............+............+.+.....+......+.......+..+
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (491)
T 4aps_A          254 TIVAIAIPVFYFAWMISSVKVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIM  333 (491)
T ss_dssp             HHHHHHHHHHHHHHHC------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHH
Confidence            00         000000000000000011111112222222233222233333333333222222334456777788888


Q ss_pred             HHHHHHHHHHhhhCCchhHH-----HHHHHHHHHHHHHHHHhhccc-CCCcchhHHHHHHHHHHHHHhcCCCcchhhhhc
Q 011308          336 SGSIIAMILMDKLGRRVLLL-----GSFLGMAIAMGVQAIAATSFV-SSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLS  409 (489)
Q Consensus       336 ~~~~~~g~l~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  409 (489)
                      ++.++.+++.||++||+...     .+..+.+++.+++........ ....+.+.......+.+.+.+. ..+....++.
T Consensus       334 ~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~  412 (491)
T 4aps_A          334 LYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEML-ISPVGLSVTT  412 (491)
T ss_dssp             HHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHT-TTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence            99999999999999886544     555555555555444332111 1112334444445555555443 3456677899


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCC
Q 011308          410 EIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGK  476 (489)
Q Consensus       410 ~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (489)
                      |.+|++.|+++.|+.+...++|..++|.+.+.+.+ .++...|.+.+++++++.++.+...++.+++
T Consensus       413 ~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (491)
T 4aps_A          413 KLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQGL  478 (491)
T ss_dssp             HHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-------
T ss_pred             HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999887655 4677788888888888777777666655543

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=100.00  E-value=2.8e-35  Score=277.85  Aligned_cols=354  Identities=14%  Similarity=0.087  Sum_probs=261.0

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~  133 (489)
                      ..+++..++..++.....+.+|.+.+++|.+.++.  |++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   80 (375)
T 2gfp_A            3 LMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAV--QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL   80 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHH--HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence            45566777788888889999999999999988877  9999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          134 MSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       134 ~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                      +.+++++++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.+.+..+ ||+.|++
T Consensus        81 ~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~-~~~~~~~  159 (375)
T 2gfp_A           81 VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN-WRACYLF  159 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHH-HHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcc-HHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998888 9999999


Q ss_pred             hHHHHHHHHHH-hhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhh
Q 011308          214 ATIPAAFLALF-MEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFI  292 (489)
Q Consensus       214 ~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (489)
                      .++..++..+. .+++||+++.   ++                              ++++...++++.+++|.++...+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~---~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~  206 (375)
T 2gfp_A          160 LLVLCAGVTFSMARWMPETRPV---DA------------------------------PRTRLLTSYKTLFGNSGFNCYLL  206 (375)
T ss_dssp             HHHHHHHHHCCCCCSSCCCSTT---TC------------------------------CCCCTTTCSTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcccCCC---Cc------------------------------ccccHHHHHHHHhcCcchHHHHH
Confidence            88887777663 4557877541   00                              00112233455666776666555


Q ss_pred             hHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHH-HHHHHHH
Q 011308          293 GSTLFALQQLSGINAVFYFSSTVFKN-AGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLG-MAIAMGV  367 (489)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~  367 (489)
                      ..++......    ....+.+.++++ .+.+..   .......++.+++.++.+++.||.+++  ...+... ...+...
T Consensus       207 ~~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~  280 (375)
T 2gfp_A          207 MLIGGLAGIA----AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLM  280 (375)
T ss_dssp             HHHHHHHHHH----HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence            5554444322    233333333222 233322   245555677778888888888887762  2222222 2222111


Q ss_pred             HHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011308          368 QAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLG  447 (489)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g  447 (489)
                      +......    ..+.+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+...++|..++|.+.|.+.+..+
T Consensus       281 ~~~~~~~----~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~  354 (375)
T 2gfp_A          281 WIPDWFG----VMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQ  354 (375)
T ss_dssp             SHHHHHH----HHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHH
T ss_pred             HHHhhhc----cccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            1111100    012233334455555555543 4566668889988 789999999999999999999999999988777


Q ss_pred             cchhhHHH
Q 011308          448 PLILYTIF  455 (489)
Q Consensus       448 ~~~~~~~~  455 (489)
                      +...+...
T Consensus       355 ~~~~~~~~  362 (375)
T 2gfp_A          355 GSLGLLMT  362 (375)
T ss_dssp             HHHHHHHH
T ss_pred             ccHHHHHH
Confidence            76555543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.97  E-value=2.8e-32  Score=260.51  Aligned_cols=380  Identities=13%  Similarity=0.064  Sum_probs=237.0

Q ss_pred             hhhccccccccchhhhh-hhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH---HHHh
Q 011308           61 FLFGYHLGVVNETLESI-SLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA---SMSA  136 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~---~~~~  136 (489)
                      +..........+.+|.+ .+++|.+..+.  |++.+.+.+++.++++++|+++||+|||++++.+..+++++.   ....
T Consensus        17 ~~~~~~~~~~~~~~~~~l~~~~g~s~~~~--g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~   94 (417)
T 2cfq_A           17 FFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI   94 (417)
T ss_dssp             HHHHHHHHHHTTTHHHHHHTTTCCCTTTS--HHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444556667764 55689988888  999999999999999999999999999999998887765532   2223


Q ss_pred             hhhhH-HHHHHHHHHHhhcccchhhhHHHHHHhcCCc--cchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Q 011308          137 ITKNL-WGMLLGRLFVGTGMGIGPAVAALYVSEVSPA--YVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWV  213 (489)
Q Consensus       137 ~~~~~-~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~  213 (489)
                      +++.. ..+...+++.|++.+...+.....+.++.++  ++|+...+....+..+|..++|.+++++.+ .+ ||+.|++
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~-~~~~f~~  172 (417)
T 2cfq_A           95 FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-IN-NQFVFWL  172 (417)
T ss_dssp             HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HC-SHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hc-hhHHHHH
Confidence            33222 1234566777776666555555555555443  456777777777788899999999998876 45 8999998


Q ss_pred             hHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhccccccchhhh
Q 011308          214 ATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRNFGVVFIG  293 (489)
Q Consensus       214 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (489)
                      .++..++..+..++.+|+++.   +.+.++                     .+++++++....+++++++++.++...+.
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (417)
T 2cfq_A          173 GSGCALILAVLLFFAKTDAPS---SATVAN---------------------AVGANHSAFSLKLALELFRQPKLWFLSLY  228 (417)
T ss_dssp             TTTTTTTHHHHSCSSCCCCSC---SSCSSS---------------------SSSSCCCCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCccccc---cccccc---------------------ccccccccccHHHHHHHhcCCchhhHHHH
Confidence            877765555554444443310   000000                     00000011122345567777776654443


Q ss_pred             HHHHHhhhhcchhHHHHhHHHHHHhcCCCCC---chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHH
Q 011308          294 STLFALQQLSGINAVFYFSSTVFKNAGVPSD---SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAI  370 (489)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  370 (489)
                      .+...........+.+.|....++..+.+..   ....+..++.+++.++.++++||++||+.+..+..+.+++.+.+.+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~  308 (417)
T 2cfq_A          229 VIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF  308 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            3322221111112223333222111111111   1333445677788999999999999999888777666665444322


Q ss_pred             HhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccc
Q 011308          371 AATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAV-CMAVHWVINFFVGLLFLRLLEQLGPL  449 (489)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~~~~~~~g~l~~~~g~~  449 (489)
                      .        .+.+..+....+.+.+... ..+....+++|.+|++.|+++.++ ++....+|+.++|.+.|.+.+..|+.
T Consensus       309 ~--------~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~  379 (417)
T 2cfq_A          309 A--------TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQ  379 (417)
T ss_dssp             C--------CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHH
T ss_pred             h--------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcH
Confidence            1        1112222222222322221 112345688999999999999999 48888999999999999999988888


Q ss_pred             hhhHHHHHHHHHHHHHhhhcccCCCCCC
Q 011308          450 ILYTIFGSFCFLAVIYVKRNVMETKGKT  477 (489)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  477 (489)
                      ..|.+.+++++++.++.+...+|+++.+
T Consensus       380 ~~f~~~~~~~l~~~~~~~~~~~~~~~~~  407 (417)
T 2cfq_A          380 GAYLVLGLVALGFTLISVFTLSGPGPLS  407 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence            8898888888888777666666665544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.97  E-value=4e-30  Score=253.71  Aligned_cols=163  Identities=15%  Similarity=0.205  Sum_probs=140.6

Q ss_pred             hhccccccccchhh-hhhhccc------ccccchHHHHHHHHHHHHHHHHHHHHHHhhccc-CchhHhhhhhHHHHHHHH
Q 011308           62 LFGYHLGVVNETLE-SISLDLG------FSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI-GRRRAFQLCALPMIIGAS  133 (489)
Q Consensus        62 ~~~~~~~~~~~~~~-~i~~~~~------~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~-Grr~~l~~~~~~~~i~~~  133 (489)
                      +..+......+.++ .+.+++|      .+..+.  |++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+
T Consensus        23 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~--g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~  100 (524)
T 2xut_A           23 CERFSFYGMRNILTPFLMTALLLSIPEELRGAVA--KDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHA  100 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTH--HHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            33333333344444 4667888      888877  9999999999999999999999999 999999999999999999


Q ss_pred             HHhhhh-hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHH---HHHHHHHHHHHHHHhhcccccccchHHH
Q 011308          134 MSAITK-NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSS---TQIAACLGILVALFVGLPAKEILGWWRI  209 (489)
Q Consensus       134 ~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~~~~~l~~~~~~Wr~  209 (489)
                      +.++++ +++.++++|+++|++.+...+...+++.|++|+++|+++.+.   .+.+.++|..++|.+++.+.+..+ ||+
T Consensus       101 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g-~~~  179 (524)
T 2xut_A          101 FLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFG-AAV  179 (524)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSC-HHH
T ss_pred             HHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHH
Confidence            999999 999999999999999999999999999999999999876666   889999999999999999998888 999


Q ss_pred             HHHHhHHHHHHHHHHhhc
Q 011308          210 CFWVATIPAAFLALFMEF  227 (489)
Q Consensus       210 ~f~~~~~~~~~~~~~~~~  227 (489)
                      .|++.++..++..+..++
T Consensus       180 ~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          180 AFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999988877666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.56  E-value=1.7e-14  Score=139.13  Aligned_cols=172  Identities=14%  Similarity=0.137  Sum_probs=141.7

Q ss_pred             HHHHHHhhhhccccccccchhhhhhhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhccc--CchhHhhhhhHHHH-
Q 011308           54 LVAIISSFLFGYHLGVVNETLESISLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGI--GRRRAFQLCALPMI-  129 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~--Grr~~l~~~~~~~~-  129 (489)
                      ....+..++............|.+.++ +|.+..+.  +++.+...++..++.++.|++.||+  |||+.+..+..+.. 
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~  332 (451)
T 1pw4_A          255 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVT  332 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence            334444444444455556667777666 78877766  9999999999999999999999999  99999988877776 


Q ss_pred             HHHHHHhhh--hhHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhcccccccch
Q 011308          130 IGASMSAIT--KNLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKEILGW  206 (489)
Q Consensus       130 i~~~~~~~~--~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~~~~~  206 (489)
                      ++.++..+.  .+.+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+.+.+.+..+ 
T Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-  411 (451)
T 1pw4_A          333 IATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-  411 (451)
T ss_dssp             HHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            666666665  36778888889999998888888899999999999999999999999999 99999999999999888 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcc
Q 011308          207 WRICFWVATIPAAFLALFMEFC  228 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~  228 (489)
                      |+..|++.++..++..+..+++
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~  433 (451)
T 1pw4_A          412 WDGGFMVMIGGSILAVILLIVV  433 (451)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999888777766655443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.39  E-value=4.6e-13  Score=127.42  Aligned_cols=141  Identities=13%  Similarity=0.044  Sum_probs=120.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS  170 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (489)
                      |+..+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.|.+
T Consensus       262 g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  341 (417)
T 2cfq_A          262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            77888888888899999999999999999999999888888888888888888888888888887777777788999999


Q ss_pred             CccchhhHHHH-HHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccCCh
Q 011308          171 PAYVRGAYGSS-TQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAESP  232 (489)
Q Consensus       171 ~~~~r~~~~~~-~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~~  232 (489)
                      |++.|+.+.++ ++....+|..++|.+++.+.+..+ ++..|.+.++..++..+..++ .+|.+
T Consensus       342 p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g-~~~~f~~~~~~~l~~~~~~~~~~~~~~  404 (417)
T 2cfq_A          342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSGPG  404 (417)
T ss_dssp             CHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH-HHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred             CHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            99999999888 478888999999999999998777 899999888877776655433 56543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.37  E-value=1e-12  Score=126.12  Aligned_cols=155  Identities=12%  Similarity=0.008  Sum_probs=124.1

Q ss_pred             cccccccchhhhh-hhc-ccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHH
Q 011308           65 YHLGVVNETLESI-SLD-LGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLW  142 (489)
Q Consensus        65 ~~~~~~~~~~~~i-~~~-~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~  142 (489)
                      ..........|.+ .++ +|.+..+.  +++.+.+.++..++.++.|+++||+|||+++..+.++..++.++..+.++.+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T 3o7q_A          272 GAQTACWSYLIRYAVEEIPGMTAGFA--ANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHV  349 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHHhhhccCCcchhHH--HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcCCcH
Confidence            3333444555655 544 48877766  9999999999999999999999999999999999999999999888888876


Q ss_pred             HHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHH
Q 011308          143 GMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLA  222 (489)
Q Consensus       143 ~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~  222 (489)
                      .++.. ++.|++.+...+....+..|.+|++ ++.+.++.. ...+|..++|.+.+.+.+..++++..|++.++..++..
T Consensus       350 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~  426 (438)
T 3o7q_A          350 GLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF  426 (438)
T ss_dssp             HHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence            65544 8889999999999999999999866 888888777 55689999999999999887646888887655544444


Q ss_pred             HH
Q 011308          223 LF  224 (489)
Q Consensus       223 ~~  224 (489)
                      +.
T Consensus       427 ~~  428 (438)
T 3o7q_A          427 IF  428 (438)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.33  E-value=3.8e-12  Score=124.04  Aligned_cols=156  Identities=10%  Similarity=-0.009  Sum_probs=121.3

Q ss_pred             ccccchhhhhhh-cccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhh-----hhhHHHHHHHHHHhhhh--
Q 011308           68 GVVNETLESISL-DLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQ-----LCALPMIIGASMSAITK--  139 (489)
Q Consensus        68 ~~~~~~~~~i~~-~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~-----~~~~~~~i~~~~~~~~~--  139 (489)
                      ......+|.+.+ .++.+..+.  +++.+...++..++.++.|++.||+|||+...     .+.++.+++.++..+..  
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  377 (491)
T 4aps_A          300 EQGSVVLATFAAERVDSSWFPV--SWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGAL  377 (491)
T ss_dssp             GGGGTHHHHHHHHSCCCSSSCS--GGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHH
T ss_pred             hhccHHHHHHHHHHhccCccCH--HHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            334445554544 356554455  78888889999999999999999999987766     77777777776666643  


Q ss_pred             -------hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHH
Q 011308          140 -------NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFW  212 (489)
Q Consensus       140 -------~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~  212 (489)
                             +.+.+.+.-++.|++.+...+....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..  +.+.|+
T Consensus       378 ~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~--~~~~~~  455 (491)
T 4aps_A          378 YGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKS--EVAYFS  455 (491)
T ss_dssp             CCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSS--TTHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence                   67778888899999999989999999999999999999999999999999999999999887654  566777


Q ss_pred             HhHHHHHHHHHHhhc
Q 011308          213 VATIPAAFLALFMEF  227 (489)
Q Consensus       213 ~~~~~~~~~~~~~~~  227 (489)
                      +.++..++..+..++
T Consensus       456 ~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          456 YFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777776666555444

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.29  E-value=4.1e-12  Score=119.19  Aligned_cols=162  Identities=12%  Similarity=0.043  Sum_probs=123.7

Q ss_pred             hhHHHHhHHHHHHhcCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHhhcccCCCcc
Q 011308          305 INAVFYFSSTVFKNAGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGA  381 (489)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (489)
                      ........+.+.++.+.+...   ......++..++.++.|+++||+|||+.+..+..+..++.++..+..+.       
T Consensus        16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------   88 (375)
T 2gfp_A           16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSL-------   88 (375)
T ss_dssp             HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccH-------
Confidence            444455567777777877765   4455667888999999999999999999999999888888777765432       


Q ss_pred             hhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q 011308          382 LSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFL  461 (489)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~  461 (489)
                       +..+....+.+.+.+. ..+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..||+..|.+.+++.++
T Consensus        89 -~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  166 (375)
T 2gfp_A           89 -TVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAG  166 (375)
T ss_dssp             -HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence             2334444444444432 34566678899999899999999999999999999999999999888999999988888887


Q ss_pred             HHHHhhhcccCCCC
Q 011308          462 AVIYVKRNVMETKG  475 (489)
Q Consensus       462 ~~~~~~~~~~~~~~  475 (489)
                      ..+...+..||+++
T Consensus       167 ~~~~~~~~~~~~~~  180 (375)
T 2gfp_A          167 VTFSMARWMPETRP  180 (375)
T ss_dssp             HHCCCCCSSCCCST
T ss_pred             HHHHHHHHCcccCC
Confidence            77655555666543

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.26  E-value=4.1e-11  Score=117.76  Aligned_cols=140  Identities=18%  Similarity=0.200  Sum_probs=106.7

Q ss_pred             CCCCc---hhHHHHHHHHHHHHHHHHHHhhh-CCchhHHHHHHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHH
Q 011308          321 VPSDS---GNICVGIANLSGSIIAMILMDKL-GRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTF  396 (489)
Q Consensus       321 ~~~~~---~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (489)
                      .+...   ......++..++.++.|+++||+ |||+.+..+.++..++.+++.+..       .+.+..+....+.+.+.
T Consensus        51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~  123 (524)
T 2xut_A           51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGS  123 (524)
T ss_dssp             TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhc
Confidence            66555   45556678889999999999999 999999988888888777766543       12233444455555554


Q ss_pred             hcCCCcchhhhhcccCChhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHhhh
Q 011308          397 SLGAGPVPSLLLSEIFPNRIRAKAMAV---CMAVHWVINFFVGLLFLRLLEQLGPLILYTIFGSFCFLAVIYVKR  468 (489)
Q Consensus       397 ~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  468 (489)
                      + ...+...+++.|.+|+++|+++.+.   .+...++|..++|.+.+.+.+..||+..|.+.+++.+++.++.+.
T Consensus       124 ~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          124 G-GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             H-TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             c-ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence            4 3446667789999999999776666   899999999999999999999889999999888877776655543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.25  E-value=3e-12  Score=124.76  Aligned_cols=168  Identities=18%  Similarity=0.089  Sum_probs=116.0

Q ss_pred             hhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhh-
Q 011308           61 FLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITK-  139 (489)
Q Consensus        61 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~-  139 (489)
                      +........+....|.+.++.+.+....  ........+...++.++.+++.||+|||+.++.+.....++.+..+... 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~  364 (491)
T 4gc0_A          287 FQQFVGINVVLYYAPEVFKTLGASTDIA--LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY  364 (491)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSSCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHHhcchHHHHhcCCCccch--hhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence            3333333444555677777777655544  5666677788889999999999999999999999888887776654421 


Q ss_pred             ----hHHHHHH-HHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhcccccc------cchHH
Q 011308          140 ----NLWGMLL-GRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEI------LGWWR  208 (489)
Q Consensus       140 ----~~~~l~~-~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~------~~~Wr  208 (489)
                          +...+.. .-+..+++ ....+....+.+|.+|.+.|++++++......+|..+++.+...+.+.      .+ +.
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~-~~  442 (491)
T 4gc0_A          365 TQAPGIVALLSMLFYVAAFA-MSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFH-NG  442 (491)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH-TTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHT-TC
T ss_pred             cccchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hh
Confidence                2222222 22222333 234467788999999999999999999999999988888776655432      22 45


Q ss_pred             HHHHHhHHHHHHHHHH-hhcccCCh
Q 011308          209 ICFWVATIPAAFLALF-MEFCAESP  232 (489)
Q Consensus       209 ~~f~~~~~~~~~~~~~-~~~~~e~~  232 (489)
                      +.|++.++++++..+. ++++||+.
T Consensus       443 ~~~~i~~~~~~~~~i~~~~~~PETk  467 (491)
T 4gc0_A          443 FSYWIYGCMGVLAALFMWKFVPETK  467 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHheecCCC
Confidence            6777777777766655 45689985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	489
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-17
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	3e-08
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 82.8 bits (203), Expect = 1e-17
 Identities = 59/445 (13%), Positives = 128/445 (28%), Gaps = 22/445 (4%)

Query: 43  NPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAF 102
           +P + R    + + I   +   Y +           ++ GFS   +  G  +S       
Sbjct: 16  DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDL--GFALSGISIAYG 73

Query: 103 VGSMFSGWIADGIGRRRAFQ----LCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIG 158
                 G ++D    R        L A  M+    +   T ++  M +     G   G+G
Sbjct: 74  FSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMG 133

Query: 159 PAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPA 218
                  +        RG   S    A  +G  +   + L        W    ++    A
Sbjct: 134 WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCA 193

Query: 219 AFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKF 278
             +ALF                  E + +           Y      K+E+   A  +  
Sbjct: 194 ILVALFAFAMMRDTPQSCGLPPIEEYKND-----------YPDDYNEKAEQELTAKQIFM 242

Query: 279 SELISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGS 338
             ++  +    + I +    L +   ++    +   V   A   S         A + G+
Sbjct: 243 QYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGT 302

Query: 339 IIAMILMDKLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSL 398
           ++   + DK+ R          M +      +   +   +     + +  +   +     
Sbjct: 303 LLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIY---- 358

Query: 399 GAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVINFFVG-LLFLRLLEQLGPLILYTIFGS 457
           G   +  L   E+ P +    A        ++        +    ++  G    + +   
Sbjct: 359 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIG 418

Query: 458 FCFLAVIYVKRNVMETKGKTLQEIE 482
              LAVI +   ++  K +  Q ++
Sbjct: 419 GSILAVILLIVVMIGEKRRHEQLLQ 443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 53.2 bits (126), Expect = 3e-08
 Identities = 49/421 (11%), Positives = 106/421 (25%), Gaps = 36/421 (8%)

Query: 51  PHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGW 110
            +  +  +  F + + +G        I L      S    G++ +     + +     G 
Sbjct: 7   TNFWMFGLFFFFYFFIMGAYFPFF-PIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGL 65

Query: 111 IADGIGRRRAFQLCALPMIIGASMSAITKN----LWGMLLGRLFVGTGMGIGPAVAALYV 166
           ++D +G R+        M++  +   I        + +L+G +  G  +G      A  V
Sbjct: 66  LSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAV 125

Query: 167 SEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFME 226
                   R +     +      +  AL   +         +  FW+ +  A  LA+ + 
Sbjct: 126 EAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF 185

Query: 227 FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN 286
           F                A                                 FS  ++   
Sbjct: 186 FAKTDAPSSATVANAVGANHS-----------------------------AFSLKLALEL 216

Query: 287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSDSGNICVGIANLSGSIIAMILMD 346
           F    +      +  +S    VF      F  +   +      V     +   +    + 
Sbjct: 217 FRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIM 276

Query: 347 KLGRRVLLLGSFLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSL 406
                ++         +  G          S + +    +    L +             
Sbjct: 277 FFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK- 335

Query: 407 LLSEIFPNRIRAKAMAVCMAVHWVINFFVG-LLFLRLLEQLGPLILYTIFGSFCFLAVIY 465
            ++  F  R  A    VC      +      +L   + E +G    Y + G       + 
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

Query: 466 V 466
            
Sbjct: 396 S 396

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 37.8 bits (86), Expect = 0.002
 Identities = 26/210 (12%), Positives = 54/210 (25%), Gaps = 2/210 (0%)

Query: 32  RMPNGLGKDIGNPPWSRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEG 91
              +     +    + +     L   +      Y +          S        T   G
Sbjct: 203 ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFG 262

Query: 92  LVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFV 151
            V +           F+  I + IG + A  L    M +    S+   +   +++ +   
Sbjct: 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH 322

Query: 152 GTGMGIGPAVAALYVSEVSPAYVRG-AYGSSTQIAACLGILVALFVGLPAKEILGWWRIC 210
              +         Y++           Y         L ++    +     E +G ++  
Sbjct: 323 MFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGA 381

Query: 211 FWVATIPAAFLALFMEFCAESPHWLFKRGR 240
           + V  + A    L   F    P  L    R
Sbjct: 382 YLVLGLVALGFTLISVFTLSGPGPLSLLRR 411

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	489
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	100.0
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.97
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.55
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.4

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.5e-40  Score=319.46  Aligned_cols=403  Identities=13%  Similarity=0.073  Sum_probs=283.8

Q ss_pred             cchhhHHHHHHHHhhhhccccccccchhhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhH
Q 011308           47 SRSLPHVLVAIISSFLFGYHLGVVNETLESISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCAL  126 (489)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~  126 (489)
                      +.+|..+..++++.+..++++..++...|.+. |+|+|.++.  |++.+++.+++.++++++|+++||+|||+++..+.+
T Consensus        21 ~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~g~s~~~~--g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~   97 (447)
T d1pw4a_          21 RLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQGFSRGDL--GFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI   97 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SSTTCSSCH--HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            34677787888888888888888888888776 579999988  999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh----hHHHHHHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHHHHHHHHHhhccccc
Q 011308          127 PMIIGASMSAITK----NLWGMLLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACLGILVALFVGLPAKE  202 (489)
Q Consensus       127 ~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~  202 (489)
                      +.+++.+++++++    +++.++++|++.|++.+...+....++.|++|+++|++++++.+.+..+|..+++.+++.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~  177 (447)
T d1pw4a_          98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMA  177 (447)
T ss_dssp             HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             HHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhh
Confidence            9999999988764    788999999999999999999999999999999999999999999999999999999888776


Q ss_pred             ccchHHHHHHHhHHHHHHHHHHhh-cccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhh
Q 011308          203 ILGWWRICFWVATIPAAFLALFME-FCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSEL  281 (489)
Q Consensus       203 ~~~~Wr~~f~~~~~~~~~~~~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (489)
                      ..++||+.|++.+++.++..+..+ +.+|+|+........ +.+           .+...+..++.+++........+..
T Consensus       178 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  245 (447)
T d1pw4a_         178 WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE-EYK-----------NDYPDDYNEKAEQELTAKQIFMQYV  245 (447)
T ss_dssp             HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCT-TTC-----------CC-------------CCTHHHHHHT
T ss_pred             hhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhh-hhh-----------hhcccchhhccccccchhhHHHHHH
Confidence            654599999998888777666544 466655421111110 000           0000000111112222333445566


Q ss_pred             hccccccchhhhHHHHHhhhhcchhHHHHhHHHHHHh-cCCCCCc---hhHHHHHHHHHHHHHHHHHHhhhCCchhHHHH
Q 011308          282 ISPRNFGVVFIGSTLFALQQLSGINAVFYFSSTVFKN-AGVPSDS---GNICVGIANLSGSIIAMILMDKLGRRVLLLGS  357 (489)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~  357 (489)
                      ++++.++......++...    .......+.+.++.+ .+.+...   ......+..+++.++.|++.||++|++.....
T Consensus       246 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  321 (447)
T d1pw4a_         246 LPNKLLWYIAIANVFVYL----LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATG  321 (447)
T ss_dssp             SSCHHHHHHHHHHHHHHH----HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HcCchHHHHHHHhhhhhh----hhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccccc
Confidence            666666555444444333    333444555555544 3444433   55666778889999999999999987655444


Q ss_pred             HHHHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHHHHHHHH-HHHHH
Q 011308          358 FLGMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCMAVHWVI-NFFVG  436 (489)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g-~~~~~  436 (489)
                      .....+...........   ...+.+.......+.+++.. +..+....+..|.+|++.+|++.|+.+.+.+++ ..++|
T Consensus       322 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~  397 (447)
T d1pw4a_         322 VFFMTLVTIATIVYWMN---PAGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAAS  397 (447)
T ss_dssp             HHHHHHHHHHHHHTTSC---CTTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44333332222222111   12233333333333333322 233455668889999999999999999998875 56689


Q ss_pred             HHHHHHHHHhccchhhHHHHHHHHHHHHHhhhcccC
Q 011308          437 LLFLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVME  472 (489)
Q Consensus       437 ~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  472 (489)
                      .+.|.+.|..|+...|.+.+++++++.++.....++
T Consensus       398 ~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  433 (447)
T d1pw4a_         398 AIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG  433 (447)
T ss_dssp             HHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999988888888877777666554433

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.7e-30  Score=245.80  Aligned_cols=386  Identities=12%  Similarity=0.023  Sum_probs=252.6

Q ss_pred             HHHHHHhhhhccccccccchhhh-hhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHH
Q 011308           54 LVAIISSFLFGYHLGVVNETLES-ISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGA  132 (489)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~  132 (489)
                      ..+.+..++..+..+...+.+|. +.+++|+|.++.  |++.+++.++..++++++|+++||+||||+++.+..+..++.
T Consensus        10 ~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~--g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~   87 (417)
T d1pv7a_          10 WMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDT--GIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMF   87 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH--HHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            34445556666666677788886 567789988887  999999999999999999999999999999999999999988


Q ss_pred             HHHhhhhhHHH----HHHHHHHHhhcccchhhhHHHHHHhcCCc--cchhhHHHHHHHHHHHHHHHHHHhhcccccccch
Q 011308          133 SMSAITKNLWG----MLLGRLFVGTGMGIGPAVAALYVSEVSPA--YVRGAYGSSTQIAACLGILVALFVGLPAKEILGW  206 (489)
Q Consensus       133 ~~~~~~~~~~~----l~~~r~l~G~~~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~~~~~l~~~~~~  206 (489)
                      .+..+..+...    .++.+.+.+.+.+...........+..++  +++.+..+........+..+++.+++.+.+..+ 
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  166 (417)
T d1pv7a_          88 APFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINN-  166 (417)
T ss_dssp             HHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccc-
Confidence            88887665544    34455555555555555544444444332  345566777788888899999999998887654 


Q ss_pred             HHHHHHHhHHHHHHHHHHhhcccCChhHHHhcCChHHHHHHHHHHhCCCCchHHHHHHhhhhhccchhhhhHHhhhcccc
Q 011308          207 WRICFWVATIPAAFLALFMEFCAESPHWLFKRGRGAEAEAELERLFGGLHVKYSMAELSKSERGDEADAVKFSELISPRN  286 (489)
Q Consensus       207 Wr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (489)
                      |+..+.......+...+..+..+|+++.   +.+.++                      +++..++.......+..+.+.
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~  221 (417)
T d1pv7a_         167 QFVFWLGSGCALILAVLLFFAKTDAPSS---ATVANA----------------------VGANHSAFSLKLALELFRQPK  221 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCCSCSS---SCSSHH----------------------HHSCCCCCCHHHHHHHTTSSH
T ss_pred             cccccchhhHHHHHHHHHHHHhcccccc---hhhhhh----------------------hhhhccccccccccccccccc
Confidence            4444444444444444455556666531   111110                      011111222223333333343


Q ss_pred             ccchhhhHHHHHhhhhcchhHHHHhHHHHHHhcCCCCC-------chhHHHHHHHHHHHHHHHHHHhhhCCchhHHHHHH
Q 011308          287 FGVVFIGSTLFALQQLSGINAVFYFSSTVFKNAGVPSD-------SGNICVGIANLSGSIIAMILMDKLGRRVLLLGSFL  359 (489)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~  359 (489)
                      .+.............    ...................       .......++..++..+.+++.||.++|+.+..+..
T Consensus       222 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~  297 (417)
T d1pv7a_         222 LWFLSLYVIGVSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGT  297 (417)
T ss_dssp             HHHHHHHHHHHHHHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHH
T ss_pred             ccchhhhhHHHHHHH----HhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHH
Confidence            333333322222211    1111111222211111111       13444556777888899999999999999988888


Q ss_pred             HHHHHHHHHHHHhhcccCCCcchhHHHHHHHHHHHHHhcCCCcchhhhhcccCChhhHHHHHHHHH-HHHHHHHHHHHHH
Q 011308          360 GMAIAMGVQAIAATSFVSSSGALSLSLGGMLLFVLTFSLGAGPVPSLLLSEIFPNRIRAKAMAVCM-AVHWVINFFVGLL  438 (489)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~~~~~~  438 (489)
                      +..++.+.+.+..        +.+..+....+.+.+.+.. .+....++.|.+|++.|+++.|+.. ....+|..++|.+
T Consensus       298 ~~~~~~~~~~~~~--------~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~  368 (417)
T d1pv7a_         298 IMSVRIIGSSFAT--------SALEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL  368 (417)
T ss_dssp             HHHHHHHHHHTCC--------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             HHHHhhhcccccc--------ccchhhHHHHHHHHHHHHH-HHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877766665432        2233444455555555433 3456668899999999999999864 5677999999999


Q ss_pred             HHHHHHHhccchhhHHHHHHHHHHHHHhhhcccCCCCCCHHH
Q 011308          439 FLRLLEQLGPLILYTIFGSFCFLAVIYVKRNVMETKGKTLQE  480 (489)
Q Consensus       439 ~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  480 (489)
                      .|.+.|..|+...|.+.++++++..++..+..+++++.++.+
T Consensus       369 ~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r  410 (417)
T d1pv7a_         369 AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR  410 (417)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence            999999999999999999998888888777777777766544

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=2e-15  Score=141.20  Aligned_cols=139  Identities=13%  Similarity=0.051  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhhcccchhhhHHHHHHhcC
Q 011308           91 GLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMIIGASMSAITKNLWGMLLGRLFVGTGMGIGPAVAALYVSEVS  170 (489)
Q Consensus        91 g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~  170 (489)
                      +...+...++..++..+.+++.||+|+|+++..+.++.+++.++..+.++.+.+++..++.|++.+...+....++.|.+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~  341 (417)
T d1pv7a_         262 GYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQF  341 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            77888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccchhhHHHHH-HHHHHHHHHHHHHhhcccccccchHHHHHHHhHHHHHHHHHHhhc-ccC
Q 011308          171 PAYVRGAYGSST-QIAACLGILVALFVGLPAKEILGWWRICFWVATIPAAFLALFMEF-CAE  230 (489)
Q Consensus       171 ~~~~r~~~~~~~-~~~~~~G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e  230 (489)
                      |+++|+++.++. +....+|..++|.++|++.+..| |+..|++.++..++..++..+ +++
T Consensus       342 ~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         342 EVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             CGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999975 56778999999999999999999 999999988877766655444 443

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=6.9e-13  Score=125.20  Aligned_cols=154  Identities=14%  Similarity=0.092  Sum_probs=117.2

Q ss_pred             cchhh-hhhhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhcccCchhHhhhhhHHHHH---HHHHHh--hhhhHHHH
Q 011308           71 NETLE-SISLDLGFSGSTMAEGLVVSTCLGGAFVGSMFSGWIADGIGRRRAFQLCALPMII---GASMSA--ITKNLWGM  144 (489)
Q Consensus        71 ~~~~~-~i~~~~~~~~~~~~~g~~~s~~~~~~~~~~~~~g~l~dr~Grr~~l~~~~~~~~i---~~~~~~--~~~~~~~l  144 (489)
                      ....| .+.+.++.+..+.  ++..+...++..++.++.|++.||++||+..........+   +.++..  ...+.+..
T Consensus       269 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (447)
T d1pw4a_         269 LDWSPTYLKEVKHFALDKS--SWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD  346 (447)
T ss_dssp             HHHHHHHBTTBSCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH
T ss_pred             hhhhhhhcccccccccchh--hhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH
Confidence            33344 4455667776666  8999999999999999999999999987654444333222   222222  24567777


Q ss_pred             HHHHHHHhhcccchhhhHHHHHHhcCCccchhhHHHHHHHHHHH-HHHHHHHhhcccccccchHHHHHHHhHHHHHHHHH
Q 011308          145 LLGRLFVGTGMGIGPAVAALYVSEVSPAYVRGAYGSSTQIAACL-GILVALFVGLPAKEILGWWRICFWVATIPAAFLAL  223 (489)
Q Consensus       145 ~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~~~~~l~~~~~~Wr~~f~~~~~~~~~~~~  223 (489)
                      .++-++.|++.+...+....+..|.+|+++|+.+.++.+....+ |.+++|.+.+.+.+..| |+..|++.+...++..+
T Consensus       347 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~  425 (447)
T d1pw4a_         347 MICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVI  425 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHH
Confidence            88888899998888889999999999999999999998877665 66778999999999999 89999887776666655


Q ss_pred             Hhhc
Q 011308          224 FMEF  227 (489)
Q Consensus       224 ~~~~  227 (489)
                      +..+
T Consensus       426 ~~~~  429 (447)
T d1pw4a_         426 LLIV  429 (447)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433