Citrus Sinensis ID: 011309

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
Protein Sequence
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHccccccccccccccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHcccccccccccccccccccHHHHcccHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccEEccccccccHccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccEccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccHHHccccHccc
Coil and Loop (DISEMBL)
mgnsfgcsasgERLVSAARDGDFVEAKMLldcnpclakystfgglnsplhfAAAKGHNEIVALLLEngadvnsrnycgqvtradylsGRTALHFAAVNGHVRCIRLVVadfvpsvpfevmntqiegdrgdgssvkskcdqsALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVsavtfhygtsmdligagstplhfaacggnLKCCQVLLSRgasrmslncngwlpldVARMWGrhwlepllapssdavmprfhpsnylslplLSVLNVARecgllssttsssddadtCAVCLERACTVAAEGCRHELCVRCALYLcstnnipsemvgppgsipcplcrhgivsftklpgspvkdikqplslglctpcmlhtrdaecespacapeiRKNRVALvssdmlcpvtcspfpsvaiplctcndgpcpsfeprevetqdesprrsqggsveqdkmegprlerttcssmfwgrrscsrehqcnseina
Flexible Loop (DISEMBL)
mgnsfgcsasgeRLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTqiegdrgdgssVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSsttsssddadTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPrevetqdesprrsqggsveqdkmegprlerttcssmfwgrrscsrehqcnseina
Low Complexity Region (SEG)
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLssttsssddadtCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Disordered region (IsUnstruct)
*****************ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ********************SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS******DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDG**************************************************************
Disordered Region (DISOPRED)
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSP*K*******LGLCTPCMLHTRD************************************************************************************************************
Disordered Region (DISEMBL)
*************LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG**************SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLL**********DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFE****************************LERTTCSSMFWGR***************
Disordered Region (DISPRO)
********ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSF*********************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	489	2.2.26 [Sep-21-2011]
Q4FE45	513	E3 ubiquitin-protein liga	yes	no	0.977	0.931	0.706	0.0
Q337A0	520	Probable E3 ubiquitin-pro	yes	no	0.995	0.936	0.613	0.0
Q6KAE5	496	Probable E3 ubiquitin-pro	yes	no	0.887	0.875	0.489	1e-114
Q6NLQ8	508	E3 ubiquitin-protein liga	no	no	0.705	0.679	0.534	1e-106
Q7EZ44	495	Probable E3 ubiquitin-pro	no	no	0.746	0.737	0.512	1e-104
Q4JHE0	420	Probable E3 ubiquitin-pro	no	no	0.674	0.785	0.537	2e-94
Q94B55	456	Putative E3 ubiquitin-pro	no	no	0.650	0.697	0.288	1e-28
Q65XV2	450	E3 ubiquitin-protein liga	no	no	0.701	0.762	0.291	2e-27
Q94CT7	446	Probable E3 ubiquitin-pro	no	no	0.591	0.647	0.297	2e-20
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	yes	no	0.372	0.092	0.334	6e-14

>sp|Q4FE45|XB33_ARATH E3 ubiquitin-protein ligase XBAT33 OS=Arabidopsis thaliana GN=XBAT33 PE=2 SV=1

 Score =  723 bits (1866), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 370/524 (70%), Positives = 416/524 (79%), Gaps = 46/524 (8%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V LLLENGADVNSRNYCGQ                        VTRADYL+GRTALHFAA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLAGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           VNGH RCIRLV+ADF+PS   + +N+  E       + K+K +QSALSKFVNKAADGGIT
Sbjct: 121 VNGHARCIRLVLADFLPS---DKLNSLPETGV---VTAKNKSEQSALSKFVNKAADGGIT 174

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNG FDCVQLLLDL ANVSAVTFHYGTSMD+IGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 175 ALHMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGSTPLHYAACGGNLKCCQIL 234

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGA +M+LNCNGWLP+D+ARMW RHWLEPLL+P+SD V+P F  SNYLSLPLLS+LN+
Sbjct: 235 LARGARKMTLNCNGWLPIDIARMWSRHWLEPLLSPNSDVVIPAFPHSNYLSLPLLSILNI 294

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE GL S+T    D+ D CAVCLER CTVAAEGC H+LCVRCALYLCS++N+PS  VGP
Sbjct: 295 AREFGLQSATI--GDEVDICAVCLERTCTVAAEGCEHQLCVRCALYLCSSSNVPSVTVGP 352

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRD-AECESPACAPEIR- 394
           PGSIPCPLCRHGI +F +LP S  +++K P+SLG C PCMLHT D  +  SP C P  + 
Sbjct: 353 PGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCMLHTGDTTDQSSPTCPPTEQR 412

Query: 395 --KNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDE-----SPRRS 447
             K R A VSSD+ CPVTCSPFPSV IP+CTCN+G CP+FE    E   E     SP R+
Sbjct: 413 SSKTRAASVSSDIFCPVTCSPFPSVNIPMCTCNEGTCPNFETHGTERHSEEHVESSPSRT 472

Query: 448 QGGSVEQDKM-EGPRLER-TTCSSMFWGRRSCSREHQCNSEINA 489
              + EQ+K+ EG RL + TTCSSMFWGRRSCSRE+QCNSEINA
Sbjct: 473 ---TTEQEKIEEGQRLGKTTTCSSMFWGRRSCSRENQCNSEINA 513

Possesses E3 ubiquitin-protein ligase activity when associated with the E2 enzyme UBC8 in vitro.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q337A0|XB33_ORYSJ Probable E3 ubiquitin-protein ligase XBOS33 OS=Oryza sativa subsp. japonica GN=XBOS33 PE=2 SV=1

 Score =  633 bits (1633), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/522 (61%), Positives = 398/522 (76%), Gaps = 35/522 (6%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNS GCSASGERLVSAARDGD VEA+MLL+ +P LA+YSTFGGLNSPLHFAAAKGH +I
Sbjct: 1   MGNSLGCSASGERLVSAARDGDAVEARMLLELSPALARYSTFGGLNSPLHFAAAKGHLDI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V LLLE GADVN RNYCGQ                        VTRADYLSGRTALHFAA
Sbjct: 61  VTLLLEKGADVNVRNYCGQTALMHACRHGHWEVVQMLLLFRCNVTRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFE------VMNTQIEGDRGDG--SSVKSKCDQSALSKFVN 148
            +G VRC+RL++ADFVPS P E      V   + + + G    SS+  K ++SA  +++N
Sbjct: 121 HDGLVRCVRLLLADFVPSAPLEDGASSTVDGGECQTNSGSSPCSSLGLKFNESARLRYIN 180

Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 208
           K ADGG+TALHMAALNG+FDC+QLL+DL ANVSAVTF YGT+ +LIGAGSTPLH+AA GG
Sbjct: 181 KPADGGVTALHMAALNGHFDCMQLLIDLGANVSAVTFPYGTTANLIGAGSTPLHYAAGGG 240

Query: 209 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSL 268
           N +CCQ+LLS+GAS+++LNCNGWLP+DVARM+GR +LEPLL+P+S++ +P + PSNYL+L
Sbjct: 241 NAECCQLLLSKGASKLTLNCNGWLPIDVARMFGRRFLEPLLSPNSNSSIPAYQPSNYLAL 300

Query: 269 PLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNN 328
           P +S+LN+ARE GLL  T +S DD+D CAVCLER+C+VAAEGC HE C++CALYLCST+N
Sbjct: 301 PFMSILNIAREFGLL-HTVASVDDSDLCAVCLERSCSVAAEGCCHEFCIKCALYLCSTSN 359

Query: 329 IPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPA 388
              E  GPPGSIPCPLCR+GI+SFTKLP +P + +K   +L  C PCML+TR  +  +  
Sbjct: 360 TRVEFTGPPGSIPCPLCRNGIMSFTKLPSTPTEGLKSSSALTFCNPCMLNTRSVDSPATI 419

Query: 389 CAPEIRKNRVALVSSDMLCPVTCSPFPSVAIPLCTC-NDGPCPSFEPREVETQDESPRRS 447
              EIR+NRVA VSS+++CP+TCSPFPS A+P C C +D PC + E ++  ++ +SP+ S
Sbjct: 420 SKAEIRRNRVAAVSSELVCPLTCSPFPSSALPTCRCSDDDPCDAIETQD-GSEVQSPQPS 478

Query: 448 QGGSVEQDKMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
              S+E DK E   L+RT+CS MFW RRSC RE QCN+EINA
Sbjct: 479 HCASMEMDKREQQDLDRTSCSGMFWSRRSCHREEQCNAEINA 520

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6KAE5|XB32_ORYSJ Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica GN=XBOS32 PE=2 SV=2

 Score =  412 bits (1060), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 240/490 (48%), Positives = 315/490 (64%), Gaps = 56/490 (11%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +GNSFGCSASGERLVSAARDGD  EA+ LL+ NP LA+YSTFGG NSPLH+AAA+GH+EI
Sbjct: 7   VGNSFGCSASGERLVSAARDGDLQEARALLEYNPRLARYSTFGGRNSPLHYAAAQGHHEI 66

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V+LLLE+G ++N RNY GQ                        V R DYL+G +ALHFAA
Sbjct: 67  VSLLLESGVEINLRNYRGQTALMQACQYGHWEVVQTLMLFNANVHRTDYLNGGSALHFAA 126

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           ++GH RC+RLV+AD+VPS+P    N+  +    +G S  +  D+  L K VN+ ADGG+T
Sbjct: 127 LHGHARCLRLVLADYVPSMP-NFWNSMKDSLSEEGPS--ADLDEDGLFKMVNQKADGGLT 183

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
            LHMAALNG+ +CVQLLLDL A+V   T   GT++DLIGAGSTPLH+AACGGN  CCQ+L
Sbjct: 184 PLHMAALNGHVECVQLLLDLGASVIEATIEDGTTIDLIGAGSTPLHYAACGGNAVCCQLL 243

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           ++RGAS  + N +GW PL VAR W R+ LE +L+   ++ + R  PS YL LPL+S++++
Sbjct: 244 IARGASLSAQNASGWTPLMVARSWHRNSLEEILSKEPESRI-RTVPSPYLCLPLMSIMSI 302

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE G       S    D CAVCLE +C+VAAEGC+HE C RCALYLCST+      V P
Sbjct: 303 AREFG-WRYLNQSPVCIDPCAVCLEGSCSVAAEGCKHEFCTRCALYLCSTSYTS---VSP 358

Query: 337 PGSIPCPLCRHGIVSFTKLPG-SPVKDI-KQPLSLGLCTPCMLHTRDAECESPACAPEIR 394
            G+IPCPLCRH I++FT LPG SP++++ +  LSL  CT C     D+   +P+ A  + 
Sbjct: 359 AGAIPCPLCRHPIIAFTALPGTSPIRELPRNSLSLSFCTTCPAVNSDS---TPSIASHLY 415

Query: 395 KN-----RVALVSSDMLCPVTCSPFPSVAIPLCTC----NDGPC--------PSFEPREV 437
           +      R+  + S     ++C   P++ +    C    +  PC        PSF  R  
Sbjct: 416 RTEFQCARMPPMGSSSFRSLSCQRLPAMKLNPSFCMGAMDTNPCLIRCSRFGPSF--RRS 473

Query: 438 ETQDESPRRS 447
            +Q ES RR+
Sbjct: 474 ASQGESSRRA 483

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6NLQ8|XB32_ARATH E3 ubiquitin-protein ligase XBAT32 OS=Arabidopsis thaliana GN=XBAT32 PE=1 SV=1

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 207/387 (53%), Positives = 270/387 (69%), Gaps = 42/387 (10%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +GNSFGCSASGERLVSAARDGD  EAK LLD NP LA+YSTFG  NSPLH++AA+GH+EI
Sbjct: 7   VGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEI 66

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V+LL+E+G D+N RNY GQ                        + R+DYL+G TALH AA
Sbjct: 67  VSLLVESGVDINLRNYRGQTALMQACQHGHWEVVLILILFGANIHRSDYLNGGTALHLAA 126

Query: 97  VNGHVRCIRLVVADFVPSVP--FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 154
           +NGH RCIR+++++++PSVP  + ++  +     G         D S L + +N+AADGG
Sbjct: 127 LNGHPRCIRILLSEYIPSVPNCWSLLKNKKTSVAG--------FDSSVLHEVINRAADGG 178

Query: 155 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
           IT LH+AALNG+ + VQLLLDL A+V+ VT   GT++DLIGAGST LH+A+CGGN +CCQ
Sbjct: 179 ITPLHVAALNGHIETVQLLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQ 238

Query: 215 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFH----PSNYLSLPL 270
           +L+S+GA   ++N NGW P+ VAR W R+WLE +L P+++   P+ H    PS +L LPL
Sbjct: 239 LLISKGACLAAVNSNGWTPMMVARSWHRNWLEEILNPTTE--QPQLHLPNVPSPFLCLPL 296

Query: 271 LSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIP 330
           +S++N+A+ECG        +   D CAVCLER CTVAA+GC HE C  CALYL +T+   
Sbjct: 297 MSIVNIAQECG-WRENDCLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYLSTTSITS 355

Query: 331 SEMVG-PPGSIPCPLCRHGIVSFTKLP 356
           S+     PGS+PCPLCR+GIVSFTKLP
Sbjct: 356 SKTSNVTPGSVPCPLCRNGIVSFTKLP 382

E3 ubiquitin-protein ligase that mediates ubiquitination of ACC synthases (ACS). Negatively regulates ethylene biosynthesis probably via ubiquitin-dependent degradation of ACS4 and ACS7 enzymes. Regulates lateral root formation and development by controlling ethylene production which inhibits lateral root formation at high concentration.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7EZ44|XB35_ORYSJ Probable E3 ubiquitin-protein ligase XBOS35 OS=Oryza sativa subsp. japonica GN=XBOS35 PE=2 SV=1

 Score =  380 bits (977), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 205/400 (51%), Positives = 273/400 (68%), Gaps = 35/400 (8%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +G+SFGCSA+GERLVSAARDGD  EA  LL+ NP LA+YSTFG  NSPLH++AAKGH+EI
Sbjct: 7   VGDSFGCSATGERLVSAARDGDIQEAMALLELNPRLARYSTFGIRNSPLHYSAAKGHHEI 66

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V+LL+E+G D+N RN  GQ                        + + D  SG TA+HFAA
Sbjct: 67  VSLLIESGVDINLRNCRGQTALMQACLYGHWKVVQILVLFKANIHKKDCFSGATAIHFAA 126

Query: 97  VNGHVRCIRLVVADFVPSVP--FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 154
           + GH RC+RL+VAD+VPS+P  + VM+ +   +       K   D  AL + +N  +DGG
Sbjct: 127 LKGHTRCLRLLVADYVPSLPEFWSVMHAKCTDETN-----KEAFDAVALRRLINNKSDGG 181

Query: 155 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
           +T LH+AAL+G+ +CVQLLLDL A+VS VT + G+++DLIG+GSTPLH+AACGG+  CCQ
Sbjct: 182 VTPLHLAALHGHAECVQLLLDLGASVSEVTINDGSTIDLIGSGSTPLHYAACGGSAVCCQ 241

Query: 215 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVL 274
           +L++ GA+  + N NG  PL VAR W +  +E +L   S+ V  R  PS+YLSLPL+S++
Sbjct: 242 LLVAAGANMRAQNTNGLTPLMVARSWHKSSVEGILTKRSE-VPVRILPSSYLSLPLMSIV 300

Query: 275 NVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMV 334
            +ARECG    T+ SS   D CA+CL+  CTV+AEGC HE C +CALYLC+T +  + + 
Sbjct: 301 KIARECG-WRKTSVSSVCHDPCAICLDTECTVSAEGCGHEFCTKCALYLCATASSSTSIR 359

Query: 335 GPPGSIPCPLCRHGIVSFTKLPG-SPVKDIKQP-LSLGLC 372
           G PGSIPCPLCRH IVSF +L   +P+K++     SL LC
Sbjct: 360 GVPGSIPCPLCRHTIVSFVRLTSTTPIKELPWTNKSLALC 399

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4JHE0|XB36_ORYSJ Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica GN=XBOS36 PE=2 SV=1

 Score =  347 bits (889), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 208/387 (53%), Positives = 249/387 (64%), Gaps = 57/387 (14%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNS GC   GERL +AA+DGD  EA+ LL  NP LA+ +TFG LNSPLH AAAKGH+EI
Sbjct: 1   MGNSLGCVGLGERLAAAAKDGDAAEAQRLLAANPGLARCTTFGNLNSPLHVAAAKGHHEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
            ALLLENGADVN+RN  GQ                        V R + LSGRTALH AA
Sbjct: 61  AALLLENGADVNARNIYGQTPLMQACRFGHWEVVQTLLVFRCNVWRVENLSGRTALHMAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
             GHV+C+RL+VAD               GDR DG              +VNKAA+GG+T
Sbjct: 121 AGGHVKCVRLLVADAA-------------GDR-DG--------------YVNKAANGGVT 152

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFH-YGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           ALH+AAL+G+ +CV LL+D  A+++A T       M  IGAGSTPLH+AACGG +KCCQ+
Sbjct: 153 ALHLAALHGHVECVHLLIDERASLAAQTLPCAAPPMASIGAGSTPLHYAACGGEVKCCQI 212

Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLN 275
           L+SRGA R ++NCNGWLP+D AR+WG +WLE +L+P S   +P+F PS YLS PL S++ 
Sbjct: 213 LVSRGADRTAINCNGWLPIDAARIWGCNWLEHVLSPKSHLPIPKFPPSGYLSQPLPSLIA 272

Query: 276 VARECGL-LSSTTSSSDD--ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSE 332
           +ARE GL LSS  S   D  AD CAVCLER CTVAAEGC HELCV+CA+ LCS      +
Sbjct: 273 IAREQGLNLSSEVSDGFDEGADACAVCLERPCTVAAEGCDHELCVKCAMDLCSVIK-SYD 331

Query: 333 MVGPPGSIPCPLCRHGIVSFTKLPGSP 359
             G  G IPCPLCR GI SF      P
Sbjct: 332 SAGIAGEIPCPLCRTGIASFRTTAAPP 358

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94B55|XB31_ARATH Putative E3 ubiquitin-protein ligase XBAT31 OS=Arabidopsis thaliana GN=XBAT31 PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 169/402 (42%), Gaps = 84/402 (20%)

Query: 1   MGNSFGCSASGER-LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
           MG S  C +  E  + ++ + GD +  + ++   P L   +T    +S LH AAA G  E
Sbjct: 1   MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query: 60  IVALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFA 95
           I++LLLE   + +  N   Q                        +   D ++ RT LH+A
Sbjct: 61  ILSLLLERFTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMFDSVNRRTCLHYA 120

Query: 96  AVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI 155
           A  GH  C++ +++    S P  V                        ++FVN   D G 
Sbjct: 121 AYYGHANCVQAILSA-AQSSPVAV--------------------HWGYARFVNIRDDKGA 159

Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           T LH+AA     +CV +LLD  + V A T  YG+       GSTPLH AA  G++ C + 
Sbjct: 160 TPLHLAARQRRPECVNVLLDSGSLVCASTSVYGS------PGSTPLHLAARSGSIDCVRK 213

Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHW----------LEPLLAPSSDAVMPRFHPSNY 265
           LL+ GA R+  + +G +P  VA M  +H            EPL+ PS    +   +    
Sbjct: 214 LLAWGADRLQRDASGRIPYVVA-MKHKHGACGALLNPSSAEPLVWPSPLKFISELNDEAK 272

Query: 266 LSLP-LLSVLNVARECGLLSSTT---------------SSSDDADTCAVCLERACTVAAE 309
           L L   L   N  RE  +L  T                S   D + C +C E+ CT+  +
Sbjct: 273 LLLEQALMEANREREKTILKGTAYSLPSPSFSDTDDNMSEVSDTELCCICFEQVCTIEVK 332

Query: 310 GCRHELCVRCALYLCSTN--NIPSEMVGPPGSIPCPLCRHGI 349
            C H++C +C L LC  N  N  +  V PP    CP CR  I
Sbjct: 333 DCGHQMCAQCTLALCCHNKPNPTTSTVTPP---VCPFCRSTI 371

No E3 ubiquitin-protein ligase activity observed when associated with the E2 enzyme UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q65XV2|XB3_ORYSJ E3 ubiquitin-protein ligase XB3 OS=Oryza sativa subsp. japonica GN=XB3 PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 124/425 (29%), Positives = 173/425 (40%), Gaps = 82/425 (19%)

Query: 1   MGNSFGCSASGER--LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           MG+   C+ +G+      AA+ GD      LL  +P LA+ +T     S LH AAA G  
Sbjct: 1   MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query: 59  EIVALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHF 94
           E++++ L+ GA  ++ N   Q                        +   D +  RT LH 
Sbjct: 61  EVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQADANILMFDSVHARTCLHH 120

Query: 95  AAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG 154
           AA  GHV C++ ++A                      +      D    ++FVN   D G
Sbjct: 121 AAYYGHVDCLQAILA---------------------AAQTTPVADSWGFARFVNVRDDHG 159

Query: 155 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
            T LH+AA  G   CVQ+LL+  A VSA+T  YG        GST LH AA  GNL C +
Sbjct: 160 ATPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFP------GSTSLHLAARSGNLDCIR 213

Query: 215 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSL------ 268
            LL+ GA R+  +  G +P  VA          LL P+S   M    P  ++S       
Sbjct: 214 KLLAWGADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAK 273

Query: 269 ----PLLSVLNVARECGLLSSTTSS------------------SDDADTCAVCLERACTV 306
                 L   N  RE  +L+ T  S                    D + C +C ++ACT+
Sbjct: 274 ALLEAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCICFDQACTI 333

Query: 307 AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQP 366
             + C H++C  C L LC  +N P+     P S  CP CR  I            D  +P
Sbjct: 334 EVQDCGHQMCAPCTLALC-CHNKPNPTTLTPPSPACPFCRGSISRLVVAQTRSACDPDKP 392

Query: 367 LSLGL 371
            SL L
Sbjct: 393 SSLQL 397

E3 ubiquitin-protein ligase required for full accumulation of the LRR receptor kinase XA21 and XA21-mediated disease resistance. Binding to XA21 may stabilize the receptor kinase and maintain its protein level. Autoubiquitinated in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q94CT7|XB31_ORYSJ Probable E3 ubiquitin-protein ligase XBOS31 OS=Oryza sativa subsp. japonica GN=XBOS31 PE=2 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 155/360 (43%), Gaps = 71/360 (19%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AA +G      MLLD +  +   S      +PL  AA +G+ E V  LL  GA+V +   
Sbjct: 54  AAANGRLQVLSMLLDRDGDVDVLSR--KKQTPLMVAAMRGNTECVVRLLRGGANVLT--- 108

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 136
                  D    RT LH AA  GH  C++ ++                      G++ ++
Sbjct: 109 ------FDSPRARTCLHHAAYYGHAECLQAIL----------------------GAAAQA 140

Query: 137 KCDQSA---LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
           +   +A    ++FVN   + G T LH+AA +    CV+LLLD  A VSA T  YG     
Sbjct: 141 QGPVAASWGFARFVNVRDERGATPLHLAARHARASCVRLLLDKGAIVSAPTAVYGFP--- 197

Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253
              GST LH AA  G+++C + LL+ GA R+  +  G +   VA   G      LL P+ 
Sbjct: 198 ---GSTALHLAARAGSMECIRELLAWGADRLQRDSAGRIAYAVAMRRGHRACAALLNPA- 253

Query: 254 DAVMPRFHPS------------NYLSLPLLSVLNVARECGLLSST----------TSSSD 291
            A  P   PS              L    L   N  RE  +L  +            S D
Sbjct: 254 -AAEPIVWPSPLKFIGELEADAKALLEAALMEANREREKRILHGSDINIKGGDEEEESED 312

Query: 292 DADTCAVCLERACTVAAEGCRHELCVRCALYLC--STNNIPSEMVGPPGSIPCPLCRHGI 349
           + + C +C E+AC++  + C H++C  C L +C  S  N  + ++ PP    CP CR  I
Sbjct: 313 EEEACNICFEQACSMEVKECGHQMCAACTLAICCHSKPNPKTLLLHPPA---CPFCRTTI 369

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 98/224 (43%), Gaps = 42/224 (18%)

Query: 41  TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
           T  GL +P+H AA  GH  IV+ L+ +GA  N+ N          + G TALH AA +G 
Sbjct: 413 TESGL-TPIHVAAFMGHVNIVSQLMHHGASPNTTN----------VRGETALHMAARSGQ 461

Query: 101 VRCIRLVVADFVPSVPFEVMNTQ----IEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
              +R +V D    V  +  + Q    I    G    V+    Q A     N A   G T
Sbjct: 462 AEVVRYLVQDGA-QVEAKAKDDQTPLHISARLGKADIVQQLLQQGASP---NAATTSGYT 517

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVT------FH----YGT------------SMDLI 194
            LH+AA  G+ D    LLD  A++S  T       H    YG             S D  
Sbjct: 518 PLHLAAREGHEDVAAFLLDHGASLSITTKKGFTPLHVAAKYGKLEVASLLLQKSASPDAA 577

Query: 195 G-AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           G +G TPLH AA   N K   +LL +GAS  +   NG+ PL +A
Sbjct: 578 GKSGLTPLHVAAHYDNQKVALLLLDQGASPHAAAKNGYTPLHIA 621

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
225455410	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.953	0.838	0.0
255539509	513	ankyrin repeat-containing protein, putat	0.997	0.951	0.832	0.0
224136956	511	predicted protein [Populus trichocarpa]	0.993	0.951	0.816	0.0
224120064	511	predicted protein [Populus trichocarpa]	0.995	0.953	0.795	0.0
449451763	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.953	0.769	0.0
356575939	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.953	0.777	0.0
356530884	511	PREDICTED: E3 ubiquitin-protein ligase X	0.995	0.953	0.768	0.0
356535892	512	PREDICTED: E3 ubiquitin-protein ligase X	0.997	0.953	0.768	0.0
356559851	511	PREDICTED: E3 ubiquitin-protein ligase X	0.995	0.953	0.760	0.0
358343696	513	Ankyrin repeat-containing protein [Medic	0.997	0.951	0.747	0.0

>gi|225455410|ref|XP_002278915.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Vitis vinifera] gi|297741088|emb|CBI31819.3| unnamed protein product [Vitis vinifera]

 Score =  875 bits (2260), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/513 (83%), Positives = 459/513 (89%), Gaps = 25/513 (4%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLENGADVNSRNYCGQ                        VTRADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           VNGHVRCIRLVVADFVPS P E +N Q  GDRGDGS++K+K DQSAL+KFVNKAADGGIT
Sbjct: 121 VNGHVRCIRLVVADFVPSAPHEAINVQNNGDRGDGSNLKNKYDQSALAKFVNKAADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGYFDCVQLLLD+HANVSAVTFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDIHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGASR++LNCNGWLPLDVARMWGRHWLEPLLAP+SD+++P F PSN LSLPL+SVLN+
Sbjct: 241 LARGASRLTLNCNGWLPLDVARMWGRHWLEPLLAPNSDSIIPVFPPSNCLSLPLMSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARECGL SSTT SSD+ D CAVCLERACTVAAEGC HELCVRCALYLCST+NIPSEMVGP
Sbjct: 301 ARECGLQSSTT-SSDETDICAVCLERACTVAAEGCGHELCVRCALYLCSTSNIPSEMVGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
           PGSIPCPLCRHGI SF KLPGSP K+IK  LSLGLCTPCMLH R+++  SPAC PEIRKN
Sbjct: 360 PGSIPCPLCRHGITSFVKLPGSPAKEIKLHLSLGLCTPCMLHPRESDRPSPACTPEIRKN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA VSSD+LCPV+CSPFPSV IPLCTC+DGPCPSFEPREVETQDESPRRSQ  S++QDK
Sbjct: 420 RVASVSSDILCPVSCSPFPSVTIPLCTCDDGPCPSFEPREVETQDESPRRSQTTSIDQDK 479

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           MEG RLERT+CSSMFWGRRSCSREHQCNSEINA
Sbjct: 480 MEGARLERTSCSSMFWGRRSCSREHQCNSEINA 512

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539509|ref|XP_002510819.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549934|gb|EEF51421.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  865 bits (2235), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/514 (83%), Positives = 452/514 (87%), Gaps = 26/514 (5%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLENGADVNSRNYCGQ                        VTRADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTSLMQACRYGHWEVVQTLLLFRCNVTRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           VNGH RCIRLVVADF+PS PFE  ++Q E D  D SS K K DQ ALSKFVNKAADGGIT
Sbjct: 121 VNGHARCIRLVVADFIPSSPFEATHSQPEVDPADASSAKHKFDQCALSKFVNKAADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGYFDCVQLLLD+HANVSAVTFHYGT+MDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDIHANVSAVTFHYGTTMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           ++RGASRM+LNCNGWLP+DVARMWGRHWLEPLLAP SD+V+PRF  SN+LSLPLLSVLN+
Sbjct: 241 IARGASRMTLNCNGWLPVDVARMWGRHWLEPLLAPYSDSVVPRFPHSNFLSLPLLSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARECG+   TT SSDD D CAVCLERAC VAAEGCRHELCVRCALYLCST+NIPSEMVGP
Sbjct: 301 ARECGMQCLTT-SSDDPDICAVCLERACNVAAEGCRHELCVRCALYLCSTSNIPSEMVGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
           PGSIPCPLCRH IVSF KLPGSP K+IK PLSLGLCTPCMLH+RD + +SPAC PEIRKN
Sbjct: 360 PGSIPCPLCRHAIVSFEKLPGSPAKEIKLPLSLGLCTPCMLHSRDTDGQSPACVPEIRKN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA VSSD LCPVTCSPFPSVAIPLCTCNDGPCPSFEPR VETQDESPR SQ  SVEQDK
Sbjct: 420 RVASVSSDFLCPVTCSPFPSVAIPLCTCNDGPCPSFEPRTVETQDESPRGSQATSVEQDK 479

Query: 457 MEGPRLERTTCSS-MFWGRRSCSREHQCNSEINA 489
           +EGPRLE+T+CS  MFWGRRSCSREHQCNSEINA
Sbjct: 480 IEGPRLEKTSCSGMMFWGRRSCSREHQCNSEINA 513

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136956|ref|XP_002322458.1| predicted protein [Populus trichocarpa] gi|222869454|gb|EEF06585.1| predicted protein [Populus trichocarpa]

 Score =  847 bits (2189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 418/512 (81%), Positives = 450/512 (87%), Gaps = 26/512 (5%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V LLLENGADVNSRNYCGQ                        V RADYLSGRTALHFAA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVIRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           VNGHVRCIRLVVADFVPS PFE M+TQ+EGD  DGSSVK++ DQSALS+FVNKAADGGIT
Sbjct: 121 VNGHVRCIRLVVADFVPSAPFEAMHTQMEGDTRDGSSVKNRFDQSALSRFVNKAADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALH+AALNGYFDCVQLLLD+HANVS+VTFHYGT+MDLIGAGSTPLH+AACGG+LKCCQ+L
Sbjct: 181 ALHIAALNGYFDCVQLLLDIHANVSSVTFHYGTTMDLIGAGSTPLHYAACGGSLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGASRM+LNCNGWLP+DVARMWGRHWLEPLLAP+SD+ +PRF  SNYLSLPLLSVLN+
Sbjct: 241 LARGASRMTLNCNGWLPVDVARMWGRHWLEPLLAPNSDSAIPRFPHSNYLSLPLLSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE G+  S  S+SDD D CAVCLERAC VAAEGC HELCVRCALYLCST NIPSEMVGP
Sbjct: 301 ARESGMHCS-VSASDDPDICAVCLERACNVAAEGCGHELCVRCALYLCSTCNIPSEMVGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
            GSIPCPLCRHGIVSF +LPGS  K++K PLSLGLCTPCMLH+ D + +SPAC PE+RKN
Sbjct: 360 TGSIPCPLCRHGIVSFVRLPGSSAKEMKLPLSLGLCTPCMLHSHDVDGQSPACLPEVRKN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RV  VSSD LCPVTCSPFPSVAIPLCTCNDGPCPSFEP+EVE+QDES  R Q  SVEQDK
Sbjct: 420 RVVSVSSDFLCPVTCSPFPSVAIPLCTCNDGPCPSFEPQEVESQDESSHRPQ-TSVEQDK 478

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEIN 488
           MEGPRLE+T+CSSMFWGRRSCSREHQCNSEIN
Sbjct: 479 MEGPRLEKTSCSSMFWGRRSCSREHQCNSEIN 510

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120064|ref|XP_002318233.1| predicted protein [Populus trichocarpa] gi|222858906|gb|EEE96453.1| predicted protein [Populus trichocarpa]

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/513 (79%), Positives = 439/513 (85%), Gaps = 26/513 (5%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V LLLENGADVNSRNYCGQ                        VTRADYL+GRTALHFAA
Sbjct: 61  VGLLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVTRADYLNGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           VNGH RCIRLVVADFVPS PFE M+ +IEGD GDGSS K++ DQSALS+FVNKAADGGIT
Sbjct: 121 VNGHARCIRLVVADFVPSAPFEAMHARIEGDTGDGSSEKNRFDQSALSRFVNKAADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHM ALNGYFDCVQLLLD+HANVS+ TFHYGT+MDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMVALNGYFDCVQLLLDIHANVSSETFHYGTTMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGASR +LNCNGWLP+DVARMWGRHWLEPLLA +S++ +PRF  SNYL+LPLLSVLN+
Sbjct: 241 LARGASRTTLNCNGWLPVDVARMWGRHWLEPLLATNSESTIPRFPHSNYLALPLLSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE GL  S T SSDD D CAVCLERAC VAAEGCRHELCVRCAL LCST NI SEMVGP
Sbjct: 301 ARESGLQCS-TRSSDDPDICAVCLERACNVAAEGCRHELCVRCALCLCSTCNISSEMVGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
            GSIPCPLCRHGIVSF +LPGS  K++K PLSLGLC PCMLH RD + +S AC PE+RKN
Sbjct: 360 TGSIPCPLCRHGIVSFDRLPGSSAKEMKLPLSLGLCAPCMLHPRDMDGKSLACLPEVRKN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA VSSD LCPVTCSPFPSVAIPLCTCND PCPS E +E E+QDES  RSQ  SVEQ K
Sbjct: 420 RVASVSSDFLCPVTCSPFPSVAIPLCTCNDEPCPSLETQEAESQDESSHRSQ-TSVEQVK 478

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           +EGPRLE+T+CSSMFWGRRSCSREHQC SEINA
Sbjct: 479 VEGPRLEKTSCSSMFWGRRSCSREHQCTSEINA 511

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451763|ref|XP_004143630.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Cucumis sativus] gi|449506474|ref|XP_004162759.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Cucumis sativus]

 Score =  818 bits (2112), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/513 (76%), Positives = 440/513 (85%), Gaps = 25/513 (4%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           V+LLLENGADVNSRNYCGQ                        V RADYLSGRTALHFAA
Sbjct: 61  VSLLLENGADVNSRNYCGQTAVMQACRYGHWEVVQTLLVFRCNVMRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           VNGHVRC+RL+VADFVPSVP+E +N+Q    R DG +VK+KC+Q ALSKF+NKAADGGIT
Sbjct: 121 VNGHVRCLRLIVADFVPSVPYEAINSQSVVSRSDGVNVKNKCEQGALSKFINKAADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGY+DCV LLLDLHANVSAVTFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYYDCVHLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGASRM+LNCNGWLPLDVARMWGRHWLEPLL P+SD+++PRF  SN+LSLPLLS LN+
Sbjct: 241 LARGASRMTLNCNGWLPLDVARMWGRHWLEPLLVPNSDSILPRFPTSNHLSLPLLSALNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARECG   S  ++SDD DTCAVCLER C+VAAEGC HELCVRCALYLCST+NI SEM+G 
Sbjct: 301 ARECG-FKSMGATSDDGDTCAVCLERVCSVAAEGCGHELCVRCALYLCSTSNIHSEMIGS 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
            GSIPCPLCRHGI+SF KL G+  K+ +  LSL +C+PC+LHT DAE ++  C PEIRKN
Sbjct: 360 LGSIPCPLCRHGIISFVKLSGATAKEKQLHLSLSICSPCILHTGDAEDQASTCTPEIRKN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA VSSD+ CPVTCSPFPS AIPLCTCNDGPCP+FE R+V T+DESPR+SQ   ++QDK
Sbjct: 420 RVASVSSDVFCPVTCSPFPSAAIPLCTCNDGPCPTFESRDVGTEDESPRQSQATPIDQDK 479

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           + GPR ERT+CSSMFWGRRSCSRE+QCNSEINA
Sbjct: 480 LGGPRSERTSCSSMFWGRRSCSRENQCNSEINA 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575939|ref|XP_003556093.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  810 bits (2092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/513 (77%), Positives = 439/513 (85%), Gaps = 25/513 (4%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+CNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLENGADVNSRNYCGQ                        V RADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVAQTLLLFRCNVIRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           V+GHVRCIRLVVADFVPS P++ ++     DRG GS+VK K + SALSKFVNK ADGGIT
Sbjct: 121 VHGHVRCIRLVVADFVPSAPYQAIHAGTAVDRGGGSNVKGKHEHSALSKFVNKTADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGYFDCVQLLLDL+ANV+AVT++YGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDLNANVNAVTYNYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           ++ GASR++LNCNGWLPLD+ARMWGRHWLE LLAPSSDA MP F  SNYLSLPL+SVLN+
Sbjct: 241 VAHGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDATMPTFSHSNYLSLPLMSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE GL SS T+SSD+ D CAVCLER C+VAAEGC HELCVRCALYLCSTNN+ SEMVGP
Sbjct: 301 AREYGLQSS-TASSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMVGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
           PGSIPCPLCRHG+VSF KLPGS  K+ K  +SLGLCTPCMLH RD +  S +  PE+ +N
Sbjct: 360 PGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCMLHPRDLDKPSLSHTPEVGRN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA V S++LCPVTCSPFPS+AIPLCTCNDGPCPSFEPREVETQD  P  SQ  +V+QDK
Sbjct: 420 RVASVPSEILCPVTCSPFPSMAIPLCTCNDGPCPSFEPREVETQDGLPHHSQASTVDQDK 479

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           +EGPRL++TTCSSMFWGRRSCSREHQCNSEINA
Sbjct: 480 IEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530884|ref|XP_003534009.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  804 bits (2076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/513 (76%), Positives = 432/513 (84%), Gaps = 26/513 (5%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+CNPCLAKYSTFGGLNSPLHFAA+KGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLENGADVNSRNYCGQ                        V +ADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFKCNVMKADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           +NGH RCIRLVVADFVPS PFE ++  +  + GD S+VK+K +QSALSKF+NK AD GIT
Sbjct: 121 INGHARCIRLVVADFVPSAPFEALHAHMVAE-GDASNVKNKYEQSALSKFINKTADAGIT 179

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGYFDCVQLLLDL ANVSA TFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 180 ALHMAALNGYFDCVQLLLDLSANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 239

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGASRM+LNCNGWLPLDVARMWGRHWLEPLL P+SDA +  F  SNYLSLPL+SVLN+
Sbjct: 240 LARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNI 299

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARECGL  STT+SS++ D CAVCLER C+VAAEGC HELCVRCALYLCST+N+ SE  GP
Sbjct: 300 ARECGL-QSTTTSSNEVDACAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETGGP 358

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
           PGSIPCPLCRHGIVSF KL GS  K+ K  +SL LCTPCMLH RD +  S +  PEIR+N
Sbjct: 359 PGSIPCPLCRHGIVSFVKLSGSKAKENKLHVSLSLCTPCMLHPRDLDRPSLSLTPEIRRN 418

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA V S+MLCPVTC+PFPSVAIPLCTCNDGPCPSFEPRE E QD SPR SQ   ++Q+K
Sbjct: 419 RVASVPSEMLCPVTCTPFPSVAIPLCTCNDGPCPSFEPREAEAQDGSPRHSQAAMMDQNK 478

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           M+GPRLE+ TCS MFWGRRSCSREHQCNSEINA
Sbjct: 479 MDGPRLEKMTCSGMFWGRRSCSREHQCNSEINA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535892|ref|XP_003536476.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  801 bits (2068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/513 (76%), Positives = 437/513 (85%), Gaps = 25/513 (4%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEA+MLL+CNPCLAKYSTFGGLNSPLHFAAAKGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAQMLLNCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLENGADVNSRNYCGQ                        V RADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMRADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           V+GHVRCIRLVVADFVPS  ++ ++   + DRG GS+ K K +QSALSKF+NK ADGGIT
Sbjct: 121 VHGHVRCIRLVVADFVPSALYQAIHAGTDVDRGGGSNAKGKHEQSALSKFINKTADGGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGYFDCVQLLLDL+ANV+AVT+HYGTSMDLIGAGSTPLH+ ACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDLNANVNAVTYHYGTSMDLIGAGSTPLHYGACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           ++RGASR++LNCNGWLPLD+ARMWGRHWLE LLAPSSDA +P F  SNYLSLPL+SVLN+
Sbjct: 241 VARGASRLALNCNGWLPLDIARMWGRHWLEQLLAPSSDASIPTFSHSNYLSLPLMSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE GL SS T SSD+ D CAVCLER C+VAAEGC HELCVRCALYLCSTNN+ SEM+GP
Sbjct: 301 AREYGLQSSPT-SSDEIDFCAVCLERPCSVAAEGCGHELCVRCALYLCSTNNVSSEMLGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
           PGSIPCPLCRHG+VSF KLPGS  K+ K  +SLGLCTPC+LH RD +  S +  PEI +N
Sbjct: 360 PGSIPCPLCRHGVVSFVKLPGSQAKENKLHVSLGLCTPCILHPRDLDQPSLSHTPEIGRN 419

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA V S++ CPVTCSPFPS+AIPLCTCNDGPCPSFEP EVETQD SP  SQ  +V+QDK
Sbjct: 420 RVASVPSEIRCPVTCSPFPSMAIPLCTCNDGPCPSFEPGEVETQDGSPHHSQASTVDQDK 479

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           +EGPRL++TTCSSMFWGRRSCSREHQCNSEINA
Sbjct: 480 IEGPRLDKTTCSSMFWGRRSCSREHQCNSEINA 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559851|ref|XP_003548210.1| PREDICTED: E3 ubiquitin-protein ligase XBAT33-like [Glycine max]

 Score =  795 bits (2053), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/513 (76%), Positives = 433/513 (84%), Gaps = 26/513 (5%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+CNPCLAKYSTFGGLNSPLHFAA+KGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLECNPCLAKYSTFGGLNSPLHFAASKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLENGADVNSRNYCGQ                        V +ADYLSGRTALHFAA
Sbjct: 61  VALLLENGADVNSRNYCGQTALMQACRYGHWEVVQTLLLFRCNVVKADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           +NGH RCIRLV+ADFVPS PFE ++ +I+ + GDGS+VK+K +QS LSKFVNK AD GIT
Sbjct: 121 INGHARCIRLVLADFVPSAPFEALHARIDAE-GDGSNVKNKHEQSVLSKFVNKTADAGIT 179

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNG+FDCVQLLLDL+ANVSA TFHYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 180 ALHMAALNGHFDCVQLLLDLNANVSAATFHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 239

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           L+RGASRM+LNCNGWLPLDVARMWGRHWLEPLL P+SDA +  F  SNYLSLPL+SVLN+
Sbjct: 240 LARGASRMALNCNGWLPLDVARMWGRHWLEPLLTPTSDATISSFPSSNYLSLPLMSVLNI 299

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARECGL  STT+SS++ D CAVCLER C+VAAEGC HELCVRCALYLCST+N+ SE  GP
Sbjct: 300 ARECGL-QSTTTSSNEVDVCAVCLERQCSVAAEGCGHELCVRCALYLCSTSNVSSETCGP 358

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPACAPEIRKN 396
           PGSIPCPLCRHGI+SF KLPGS  K+ K  +SL LCTPCMLH  D +  + +  PEIR+N
Sbjct: 359 PGSIPCPLCRHGIISFVKLPGSQAKENKLHVSLSLCTPCMLHPCDLDRPTVSHTPEIRRN 418

Query: 397 RVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQDK 456
           RVA V S+MLCPVTC+PFPSVAIPLCTCN+GPCPSFEPRE E Q  SP  S    ++QDK
Sbjct: 419 RVASVPSEMLCPVTCTPFPSVAIPLCTCNNGPCPSFEPREAEAQGGSPLHSHASMMDQDK 478

Query: 457 MEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           M+GPRLE+TTCS MFWGRRSCSREHQCNSEINA
Sbjct: 479 MDGPRLEKTTCSGMFWGRRSCSREHQCNSEINA 511

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358343696|ref|XP_003635934.1| Ankyrin repeat-containing protein [Medicago truncatula] gi|355501869|gb|AES83072.1| Ankyrin repeat-containing protein [Medicago truncatula]

 Score =  777 bits (2007), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/514 (74%), Positives = 425/514 (82%), Gaps = 26/514 (5%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           MGNSFGCSASGERLVSAARDGD VEAKMLL+ NPCLAKYSTFGGLNSPLHFAA+KGHNEI
Sbjct: 1   MGNSFGCSASGERLVSAARDGDLVEAKMLLEFNPCLAKYSTFGGLNSPLHFAASKGHNEI 60

Query: 61  VALLLENGADVNSRNYCGQ------------------------VTRADYLSGRTALHFAA 96
           VALLLE GADVNSRNYCGQ                        V +ADYLSGRTALHFAA
Sbjct: 61  VALLLEKGADVNSRNYCGQTALMQACRHGYWEVVQTLMLYRCNVMKADYLSGRTALHFAA 120

Query: 97  VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
           V+GHVRCIRLVVAD VPS P+E ++ +++ D GDGS+ K K +QS LSKFVNK AD GIT
Sbjct: 121 VSGHVRCIRLVVADLVPSAPYETLHARVDADVGDGSNTKRKNEQSELSKFVNKTADAGIT 180

Query: 157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           ALHMAALNGYFDCVQLLLDL+AN SA T+HYGTSMDLIGAGSTPLH+AACGGNLKCCQ+L
Sbjct: 181 ALHMAALNGYFDCVQLLLDLNANASAATYHYGTSMDLIGAGSTPLHYAACGGNLKCCQIL 240

Query: 217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNV 276
           LS+GA+RM+LNCNGWLPLDVARMWGRHWLEPLLAPSSD ++  F  SNYL LPL+SVLN+
Sbjct: 241 LSKGATRMALNCNGWLPLDVARMWGRHWLEPLLAPSSDTIVSSFPTSNYLLLPLMSVLNI 300

Query: 277 ARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGP 336
           ARE GL S TT SS++ D CAVCLER CTVAAEGC HELCVRCALYLCST N+ SEM GP
Sbjct: 301 AREYGLHSPTT-SSNEIDFCAVCLERPCTVAAEGCMHELCVRCALYLCSTANVSSEMHGP 359

Query: 337 PGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHTRDAECESPA-CAPEIRK 395
           PGS+PCPLCRHGI+SF KLP    K+ K   SL +CTPC+ H RD +  S +    EIRK
Sbjct: 360 PGSVPCPLCRHGIISFVKLPSFQPKENKLHASLSMCTPCIQHPRDIDQSSFSHNTSEIRK 419

Query: 396 NRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQD 455
           NRVA VSS+MLCPVTC+PFPSVAIPLCTCNDGPCP FEP E ETQDESPR SQ  + +QD
Sbjct: 420 NRVASVSSEMLCPVTCTPFPSVAIPLCTCNDGPCPPFEPGEDETQDESPRHSQASTTDQD 479

Query: 456 KMEGPRLERTTCSSMFWGRRSCSREHQCNSEINA 489
           KMEGP+L + TCS+MFWGRRSCSRE+QCNSEINA
Sbjct: 480 KMEGPKLVKKTCSNMFWGRRSCSRENQCNSEINA 513

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	489
TAIR|locus:2182860	513	XBAT33 "XB3 ortholog 3 in Arab	0.822	0.783	0.691	2e-195
TAIR|locus:2172600	508	XBAT32 "AT5G57740" [Arabidopsi	0.785	0.755	0.430	4.3e-77
UNIPROTKB|Q65XV2	450	XB3 "E3 ubiquitin-protein liga	0.511	0.555	0.314	2.5e-27
TAIR|locus:2053205	456	XBAT31 "XB3 ortholog 1 in Arab	0.513	0.550	0.311	1.2e-24
MGI|MGI:3045243	993	Ankrd44 "ankyrin repeat domain	0.382	0.188	0.320	9.2e-11
ZFIN|ZDB-GENE-030131-4865	1267	si:ch211-155m12.3 "si:ch211-15	0.433	0.167	0.311	6.1e-06
UNIPROTKB|F1MY81	1136	ANK1 "Uncharacterized protein"	0.480	0.206	0.304	5e-10
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.453	0.117	0.3	7.1e-10
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.396	0.104	0.314	1.2e-09
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.396	0.104	0.314	1.2e-09

TAIR|locus:2182860 XBAT33 "XB3 ortholog 3 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 1501 (533.4 bits), Expect = 2.0e-195, Sum P(2) = 2.0e-195
 Identities = 289/418 (69%), Positives = 332/418 (79%)

Query:    80 VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCD 139
             VTRADYL+GRTALHFAAVNGH RCIRLV+ADF+PS   + +N+  E   G  ++ K+K +
Sbjct:   104 VTRADYLAGRTALHFAAVNGHARCIRLVLADFLPS---DKLNSLPE--TGVVTA-KNKSE 157

Query:   140 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST 199
             QSALSKFVNKAADGGITALHMAALNG FDCVQLLLDL ANVSAVTFHYGTSMD+IGAGST
Sbjct:   158 QSALSKFVNKAADGGITALHMAALNGLFDCVQLLLDLEANVSAVTFHYGTSMDMIGAGST 217

Query:   200 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPR 259
             PLH+AACGGNLKCCQ+LL+RGA +M+LNCNGWLP+D+ARMW RHWLEPLL+P+SD V+P 
Sbjct:   218 PLHYAACGGNLKCCQILLARGARKMTLNCNGWLPIDIARMWSRHWLEPLLSPNSDVVIPA 277

Query:   260 FHPSNYLSLPLLSVLNVARECGLLXXXXXXXXXXXXCAVCLERACTVAAEGCRHELCVRC 319
             F  SNYLSLPLLS+LN+ARE GL             CAVCLER CTVAAEGC H+LCVRC
Sbjct:   278 FPHSNYLSLPLLSILNIAREFGL--QSATIGDEVDICAVCLERTCTVAAEGCEHQLCVRC 335

Query:   320 ALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKDIKQPLSLGLCTPCMLHT 379
             ALYLCS++N+PS  VGPPGSIPCPLCRHGI +F +LP S  +++K P+SLG C PCMLHT
Sbjct:   336 ALYLCSSSNVPSVTVGPPGSIPCPLCRHGITAFKRLPSSLTREMKLPMSLGFCAPCMLHT 395

Query:   380 RDA-ECESPACAP-EIR--KNRVALVSSDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPR 435
              D  +  SP C P E R  K R A VSSD+ CPVTCSPFPSV IP+CTCN+G CP+FE  
Sbjct:   396 GDTTDQSSPTCPPTEQRSSKTRAASVSSDIFCPVTCSPFPSVNIPMCTCNEGTCPNFETH 455

Query:   436 EVETQDESPRRSQGG--SVEQDKME-GPRLERTT-CSSMFWGRRSCSREHQCNSEINA 489
               E   E    S     + EQ+K+E G RL +TT CSSMFWGRRSCSRE+QCNSEINA
Sbjct:   456 GTERHSEEHVESSPSRTTTEQEKIEEGQRLGKTTTCSSMFWGRRSCSRENQCNSEINA 513

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2172600 XBAT32 "AT5G57740" [Arabidopsis thaliana (taxid:3702)]

 Score = 776 (278.2 bits), Expect = 4.3e-77, P = 4.3e-77
 Identities = 184/427 (43%), Positives = 253/427 (59%)

Query:    52 AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
             A   GH E+V +L+  GA+++         R+DYL+G TALH AA+NGH RCIR++++++
Sbjct:    91 ACQHGHWEVVLILILFGANIH---------RSDYLNGGTALHLAALNGHPRCIRILLSEY 141

Query:   112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
             +PSVP     + ++  +   +SV    D S L + +N+AADGGIT LH+AALNG+ + VQ
Sbjct:   142 IPSVPN--CWSLLKNKK---TSVAG-FDSSVLHEVINRAADGGITPLHVAALNGHIETVQ 195

Query:   172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
             LLLDL A+V+ VT   GT++DLIGAGST LH+A+CGGN +CCQ+L+S+GA   ++N NGW
Sbjct:   196 LLLDLGASVTQVTVEDGTTIDLIGAGSTALHYASCGGNTQCCQLLISKGACLAAVNSNGW 255

Query:   232 LPLDVARMWGRHWLEPLLAPSSDAVMPRFH----PSNYLSLPLLSVLNVARECGLLXXXX 287
              P+ VAR W R+WLE +L P+++   P+ H    PS +L LPL+S++N+A+ECG      
Sbjct:   256 TPMMVARSWHRNWLEEILNPTTE--QPQLHLPNVPSPFLCLPLMSIVNIAQECGW-REND 312

Query:   288 XXXXXXXXCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVG--PPGSIPCPLC 345
                     CAVCLER CTVAA+GC HE C  CALYL ST +I S       PGS+PCPLC
Sbjct:   313 CLTPCRDPCAVCLERKCTVAADGCAHEFCTNCALYL-STTSITSSKTSNVTPGSVPCPLC 371

Query:   346 RHGIVSFTKLPGSPVK-----DIKQPLSLGLCTPCMLHTRD-AECESP--ACAPEIRK-- 395
             R+GIVSFTKLP +          +  +SL  CT C     D A   +P  +C P + +  
Sbjct:   372 RNGIVSFTKLPHTTATTRTSTSSRTSISLSFCT-CSSDVLDTALLTNPHYSCKPVVSRTG 430

Query:   396 NRVALVS-SDMLCPVTCSPFPSVAIPLCTCNDGPCPSFEPREVETQDESPRRSQGGSVEQ 454
             +R    + S     ++C  FP     LC    G     EPR         R   G     
Sbjct:   431 SRTPQSARSSAFRSLSCRRFPP---SLCL---GGSDVDEPRSRLIGGSYSRSGVGFRRST 484

Query:   455 DKMEGPR 461
              ++EG R
Sbjct:   485 SQVEGKR 491

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010311 "lateral root formation" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010366 "negative regulation of ethylene biosynthetic process" evidence=IMP

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

UNIPROTKB|Q65XV2 XB3 "E3 ubiquitin-protein ligase XB3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 242 (90.2 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
 Identities = 89/283 (31%), Positives = 132/283 (46%)

Query:     1 MGNSFGCSASGER--LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
             MG+   C+ +G+      AA+ GD      LL  +P LA+ +T     S LH AAA G  
Sbjct:     1 MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATLYDRLSVLHIAAANGRI 60

Query:    59 EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI-RLVVADFVPSVPF 117
             E++++ L+ GA  ++ N   Q          T L  AA++G + C+ +L+ AD    + F
Sbjct:    61 EVLSMFLDRGAPPDAVNRHKQ----------TPLMLAAMHGKIDCVLKLLQAD-ANILMF 109

Query:   118 EVMNTQI----EGDRGDGSSVKS---------KCDQSALSKFVNKAADGGITALHMAALN 164
             + ++ +         G    +++           D    ++FVN   D G T LH+AA  
Sbjct:   110 DSVHARTCLHHAAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGATPLHLAARQ 169

Query:   165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
             G   CVQ+LL+  A VSA+T  YG        GST LH AA  GNL C + LL+ GA R+
Sbjct:   170 GRPGCVQVLLENGAIVSALTGSYGFP------GSTSLHLAARSGNLDCIRKLLAWGADRL 223

Query:   225 SLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLS 267
               +  G +P  VA          LL P+S   M    P  ++S
Sbjct:   224 QRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFIS 266

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0016301 "kinase activity" evidence=IDA

TAIR|locus:2053205 XBAT31 "XB3 ortholog 1 in Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.2e-24, Sum P(2) = 1.2e-24
 Identities = 91/292 (31%), Positives = 137/292 (46%)

Query:     1 MGNSFGCSASGER-LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
             MG S  C +  E  + ++ + GD +  + ++   P L   +T    +S LH AAA G  E
Sbjct:     1 MGQSMSCGSRPEHGIFASVQCGDIITIRRVMATEPSLLNQTTPYDRHSVLHVAAANGQIE 60

Query:    60 IVALLLENGADVNSRNYCGQVTRADYLSG--RTALHFAAVNGHVRCIRLVVADFVPSVPF 117
             I++LLLE            + T  D L+   +T L  AA+ G + C++ +       + F
Sbjct:    61 ILSLLLE------------RFTNPDLLNRHKQTPLMLAAMYGRISCVKKLAEVGANILMF 108

Query:   118 EVMNTQI----EGDRGDGSSVKS--KCDQSA-------LSKFVNKAADGGITALHMAALN 164
             + +N +         G  + V++     QS+        ++FVN   D G T LH+AA  
Sbjct:   109 DSVNRRTCLHYAAYYGHANCVQAILSAAQSSPVAVHWGYARFVNIRDDKGATPLHLAARQ 168

Query:   165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
                +CV +LLD  + V A T  YG+       GSTPLH AA  G++ C + LL+ GA R+
Sbjct:   169 RRPECVNVLLDSGSLVCASTSVYGSP------GSTPLHLAARSGSIDCVRKLLAWGADRL 222

Query:   225 SLNCNGWLPLDVARMWGRHWL-EPLLAPSSDAVMPRFHPSNYLSLPLLSVLN 275
               + +G +P  VA M  +H     LL PSS    P   PS    L  +S LN
Sbjct:   223 QRDASGRIPYVVA-MKHKHGACGALLNPSS--AEPLVWPS---PLKFISELN 268

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0051049 "regulation of transport" evidence=RCA

MGI|MGI:3045243 Ankrd44 "ankyrin repeat domain 44" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 9.2e-11, P = 9.2e-11
 Identities = 68/212 (32%), Positives = 99/212 (46%)

Query:    43 GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVR 102
             G L SPLH AA  GH++ + +LL++  D++ R+            GRTAL+ AA  GH  
Sbjct:   565 GALKSPLHLAAYNGHHQALEVLLQSLVDLDIRDE----------KGRTALYLAAFKGHTE 614

Query:   103 CIRLVVADFVPS-VPFEVMN-TQIEGDRGDGSSVKSKCD-QSALSKFVNKAADG-GITAL 158
             C+  +V       V   V   T +     +G ++  +   ++A +  V    D  G T L
Sbjct:   615 CVEALVNQGASIFVKDNVTKRTPLHASVINGHTLCLRLLLETADNPEVVDVKDAKGQTPL 674

Query:   159 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
              +A   G+ D V LLL+  ANV AV        D++G   T LH     G+ +C Q+LL 
Sbjct:   675 MLAVAYGHIDAVSLLLEKEANVDAV--------DIVGC--TALHRGIMTGHEECVQMLLE 724

Query:   219 RGASRMSLNCNGWLPLDVARMWGRH-WLEPLL 249
             + AS +  +  G  PL  A   G   WL  LL
Sbjct:   725 QEASILCKDSRGRTPLHYAAARGHATWLNELL 756

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-030131-4865 si:ch211-155m12.3 "si:ch211-155m12.3" [Danio rerio (taxid:7955)]

 Score = 142 (55.0 bits), Expect = 6.1e-06, P = 6.1e-06
 Identities = 75/241 (31%), Positives = 104/241 (43%)

Query:    47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTR----------ADYLSGRTALHFAA 96
             +PLH AAAKG  EI  LLL++GAD + +N  G +             D L G  AL  AA
Sbjct:   693 TPLHEAAAKGKYEICKLLLKHGADPSKKNRDGNMALDMVKDGDTDIQDLLRGDAALLDAA 752

Query:    97 VNGHV-RCIRLVVADFVPSVPFEVMN-TQIEGDRG-DGSSVKSKCDQSALSKFVNKAADG 153
               G + R  +L   + +     +  N T +    G +   V     +      VN    G
Sbjct:   753 KKGCLARVQKLCSPENINCRDTQGRNSTPLHLAAGYNNLEVAEYLLEHGAD--VNAQDKG 810

Query:   154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
             G+  LH AA  G+ D   LL+  +  V+A T  +           TPLH AA  G  + C
Sbjct:   811 GLIPLHNAASYGHVDIAALLIKFNTCVNA-TDKWAF---------TPLHEAAQKGRTQLC 860

Query:   214 QVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLEPLLAPSSDAVMPRFHP-SNYLSLPLL 271
              +LL+ GA+    N  G   LD+A     R  L   + P  DA+   F P +  LS  L+
Sbjct:   861 ALLLAHGANPTMKNQEGQTALDLATADDIRALLMDAMPP--DALPSCFKPQATVLSAALI 918

Query:   272 S 272
             S
Sbjct:   919 S 919

GO:0003950 "NAD+ ADP-ribosyltransferase activity" evidence=IEA

UNIPROTKB|F1MY81 ANK1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 5.0e-10, P = 5.0e-10
 Identities = 84/276 (30%), Positives = 126/276 (45%)

Query:    17 AARDGDFVEAKMLL--DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
             AAR+ D   A +LL  D NP +   + F    +PLH AA   +  +  LLL  GA VN  
Sbjct:   179 AARNDDTRTAAVLLQNDPNPDVLSKTGF----TPLHIAAHYENLNVAQLLLNRGASVN-- 232

Query:    75 NYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDG 131
              +  Q       +G T LH A+  G+V  +RL++   A        E+         G  
Sbjct:   233 -FTPQ-------NGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHL 284

Query:   132 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 191
                +   D  A  +   K    G++ +HMAA   + DCV+LLL  +A +  +T      +
Sbjct:   285 RISEILLDHGAPIQAKTK---NGLSPIHMAAQGDHLDCVRLLLQYNAEIDDIT------L 335

Query:   192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLL- 249
             D +    TPLH AA  G+ +  +VLL +GA   S   NG+ PL +A        +E LL 
Sbjct:   336 DHL----TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIACKKNHIRVMELLLK 391

Query:   250 -APSSDAV----MPRFHPSNYLS-LPLLSVLNVARE 279
                S DAV    +   H ++++  LP++  L + RE
Sbjct:   392 MGASIDAVTESGLTPLHVASFMGHLPIVKSL-LQRE 426

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 7.1e-10, P = 7.1e-10
 Identities = 78/260 (30%), Positives = 118/260 (45%)

Query:    15 VSAARDGDFVEA-KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +  A  GD ++  ++LL  N  +    T   L +PLH AA  GH+ +  +LL+ GA  NS
Sbjct:   342 IHMAAQGDHLDCVRLLLQYNAEIDDI-TLDHL-TPLHVAAHCGHHRVAKVLLDKGAKPNS 399

Query:    74 RNYCG-----------QVTRADYL------------SGRTALHFAAVNGHVRCIR-LVVA 109
             R   G            +   + L            SG T LH A+  GH+  ++ L+  
Sbjct:   400 RALNGFTPLHIACKKNHIRVMELLLKTGASIDAVTESGLTPLHVASFMGHLPIVKNLLQR 459

Query:   110 DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC 169
             D  P+V    + T +      G +  +K      +K VN  A    T LH AA  G+ + 
Sbjct:   460 DASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAARIGHTNM 518

Query:   170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 229
             V+LLL+ +AN +  T           AG TPLH AA  G+++    LL +GAS+  +   
Sbjct:   519 VKLLLENNANPNLATT----------AGHTPLHIAAREGHVETALALLEKGASQACMTKK 568

Query:   230 GWLPLDVARMWGRHWLEPLL 249
             G+ PL VA  +G+  +  LL
Sbjct:   569 GFTPLHVAAKYGKVRVAELL 588

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 71/226 (31%), Positives = 104/226 (46%)

Query:    17 AARDGDFVEAKMLL--DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
             AAR+ D   A +LL  D NP +   + F    +PLH AA   +  +  LLL  GA VN  
Sbjct:   174 AARNDDTRTAAVLLQNDPNPDVLSKTGF----TPLHIAAHYENLNVAQLLLNRGASVN-- 227

Query:    75 NYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDG 131
              +  Q       +G T LH A+  G+V  +RL++   A        E+         G  
Sbjct:   228 -FTPQ-------NGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHV 279

Query:   132 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 191
                +   D  A  +   K    G++ +HMAA   + DCV+LLL  +A +  +T      +
Sbjct:   280 RISEILLDHGAPIQAKTK---NGLSPIHMAAQGDHLDCVRLLLQYNAEIDDIT------L 330

Query:   192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
             D +    TPLH AA  G+ +  +VLL +GA   S   NG+ PL +A
Sbjct:   331 DHL----TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIA 372

GO:0007165 "signal transduction" evidence=IEA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.2e-09, P = 1.2e-09
 Identities = 71/226 (31%), Positives = 104/226 (46%)

Query:    17 AARDGDFVEAKMLL--DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
             AAR+ D   A +LL  D NP +   + F    +PLH AA   +  +  LLL  GA VN  
Sbjct:   176 AARNDDTRTAAVLLQNDPNPDVLSKTGF----TPLHIAAHYENLNVAQLLLNRGASVN-- 229

Query:    75 NYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDG 131
              +  Q       +G T LH A+  G+V  +RL++   A        E+         G  
Sbjct:   230 -FTPQ-------NGITPLHIASRRGNVIMVRLLLDRGAQIETRTKDELTPLHCAARNGHV 281

Query:   132 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 191
                +   D  A  +   K    G++ +HMAA   + DCV+LLL  +A +  +T      +
Sbjct:   282 RISEILLDHGAPIQAKTK---NGLSPIHMAAQGDHLDCVRLLLQYNAEIDDIT------L 332

Query:   192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
             D +    TPLH AA  G+ +  +VLL +GA   S   NG+ PL +A
Sbjct:   333 DHL----TPLHVAAHCGHHRVAKVLLDKGAKPNSRALNGFTPLHIA 374

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6KAE5	XB32_ORYSJ	6, ., 3, ., 2, ., -	0.4897	0.8875	0.875	yes	no
Q4FE45	XB33_ARATH	6, ., 3, ., 2, ., -	0.7061	0.9775	0.9317	yes	no
Q337A0	XB33_ORYSJ	6, ., 3, ., 2, ., -	0.6130	0.9959	0.9365	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	489
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-28
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	6e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-18
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-18
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-14
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-14
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-12
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-09
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	4e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	5e-08
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	3e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	5e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-06
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-05
smart00248	30	smart00248, ANK, ankyrin repeats	3e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-05
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	9e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-04
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	7e-04
smart00248	30	smart00248, ANK, ankyrin repeats	9e-04
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  108 bits (272), Expect = 3e-28
 Identities = 60/172 (34%), Positives = 80/172 (46%), Gaps = 53/172 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH AA+ GH E+V LLLENGADVN+++            GRT LH AA NGH+  ++
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGADVNAKDN----------DGRTPLHLAAKNGHLEIVK 57

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L++                          +   D       VN     G T LH+AA NG
Sbjct: 58  LLL--------------------------EKGAD-------VNARDKDGNTPLHLAARNG 84

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
             D V+LLL   A+V+A              G TPLH AA  G+L+  ++LL
Sbjct: 85  NLDVVKLLLKHGADVNARDKD----------GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 90.9 bits (226), Expect = 6e-22
 Identities = 48/155 (30%), Positives = 70/155 (45%), Gaps = 43/155 (27%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           GRT LH AA NGH+  ++L++                          ++  D       V
Sbjct: 7   GRTPLHLAASNGHLEVVKLLL--------------------------ENGAD-------V 33

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           N   + G T LH+AA NG+ + V+LLL+  A+V+A              G+TPLH AA  
Sbjct: 34  NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD----------GNTPLHLAARN 83

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
           GNL   ++LL  GA   + + +G  PL +A   G 
Sbjct: 84  GNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.9 bits (213), Expect = 3e-20
 Identities = 53/172 (30%), Positives = 72/172 (41%), Gaps = 49/172 (28%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
           +  G +     L  AA +G     K+LL+    +      G   +PLH AA  GH EIV 
Sbjct: 4   DEDGRTP----LHLAASNGHLEVVKLLLENGADVNAKDNDG--RTPLHLAAKNGHLEIVK 57

Query: 63  LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 122
           LLLE GADVN+R+            G T LH AA NG++  ++L++              
Sbjct: 58  LLLEKGADVNARDK----------DGNTPLHLAARNGNLDVVKLLL-------------- 93

Query: 123 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 174
                 G                 VN     G T LH+AA NG+ + V+LLL
Sbjct: 94  ----KHGAD---------------VNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 80.4 bits (199), Expect = 1e-18
 Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 45/135 (33%)

Query: 49  LHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           LH AA  G+ E+V LLLE GADVN  +              TALH AA NG++  ++L++
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD------------TALHLAARNGNLEIVKLLL 48

Query: 109 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168
                                     +   D       VN     G TALH+AA NG  +
Sbjct: 49  --------------------------EHGAD-------VNAKDKDGNTALHLAARNGNLE 75

Query: 169 CVQLLLDLHANVSAV 183
            V+LLL+  A+++  
Sbjct: 76  IVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 79.2 bits (196), Expect = 3e-18
 Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 14/93 (15%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  AA++G+    K+LL+    +    T    ++ LH AA  G+ EIV LLLE+GADVN+
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT----DTALHLAARNGNLEIVKLLLEHGADVNA 56

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           ++            G TALH AA NG++  ++L
Sbjct: 57  KDK----------DGNTALHLAARNGNLEIVKL 79

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 78.6 bits (194), Expect = 1e-17
 Identities = 34/96 (35%), Positives = 51/96 (53%), Gaps = 10/96 (10%)

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           N   + G T LH+AA NG+ + V+LLL+  A+V+A              G TPLH AA  
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDND----------GRTPLHLAAKN 50

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
           G+L+  ++LL +GA   + + +G  PL +A   G  
Sbjct: 51  GHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNL 86

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 72.2 bits (176), Expect = 2e-14
 Identities = 55/185 (29%), Positives = 78/185 (42%), Gaps = 45/185 (24%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
              PLH AA+KG ++IV LLL +GADVN+++            G T LH AA+NG+    
Sbjct: 73  GRLPLHSAASKGDDKIVKLLLASGADVNAKDA----------DGDTPLHLAALNGNPPEG 122

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            + VA  +                          +  A     N   + G T LH AALN
Sbjct: 123 NIEVAKLL-------------------------LEAGADLDVNNLRDEDGNTPLHWAALN 157

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G  D V+LLL+  A+ ++              G T L  AA  G ++  ++LL +G    
Sbjct: 158 GDADIVELLLEAGADPNSRNS----------YGVTALDPAAKNGRIELVKLLLDKGLHLS 207

Query: 225 SLNCN 229
            L  N
Sbjct: 208 LLKFN 212

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.5 bits (163), Expect = 8e-14
 Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 45/130 (34%)

Query: 92  LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA 151
           LH AA NG++  ++L++                  ++G   ++                 
Sbjct: 1   LHLAAKNGNLELVKLLL------------------EKGADVNLGDTD------------- 29

Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
               TALH+AA NG  + V+LLL+  A+V+A              G+T LH AA  GNL+
Sbjct: 30  ----TALHLAARNGNLEIVKLLLEHGADVNAKDKD----------GNTALHLAARNGNLE 75

Query: 212 CCQVLLSRGA 221
             ++LL  GA
Sbjct: 76  IVKLLLEHGA 85

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 10/61 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            + LH AA  G  E+V  LLE G D+N  +            G TALH AA NG++  ++
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDED----------GNTALHIAAENGNLEVLK 51

Query: 106 L 106
           L
Sbjct: 52  L 52

Length = 54

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 12/88 (13%)

Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
           LH+AA NG  + V+LLL+  A+V+             G   T LH AA  GNL+  ++LL
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNL------------GDTDTALHLAARNGNLEIVKLLL 48

Query: 218 SRGASRMSLNCNGWLPLDVARMWGRHWL 245
             GA   + + +G   L +A   G   +
Sbjct: 49  EHGADVNAKDKDGNTALHLAARNGNLEI 76

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 54/201 (26%), Positives = 82/201 (40%), Gaps = 43/201 (21%)

Query: 26  AKMLLDCNPCLAKYSTFGGLNSPLHFAAAK--GHNEIVALLLENGADVNSRNYCGQVTRA 83
            K+LL+    +      G   +PL +A +K      IV  LL+NGA+VN +N        
Sbjct: 89  VKLLLEYGANVNAPDNNG--ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS------- 139

Query: 84  DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
               G   LH       +   +         +  +++   I  D+G   + K++ +   L
Sbjct: 140 ---DGENLLHLY-----LESNK---------IDLKILKLLI--DKGVDINAKNRVN-YLL 179

Query: 144 SKFV--NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 201
           S  V  N     G T LH A  N   + V+ LLDL AN + V  +          G TPL
Sbjct: 180 SYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY----------GDTPL 229

Query: 202 HFAACGGNLKCCQVLLSRGAS 222
           H A    N +  ++LL+ G S
Sbjct: 230 HIAILNNNKEIFKLLLNNGPS 250

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 20/30 (66%), Positives = 24/30 (80%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVNSRN 75
          N+PLH AA  GH E+V LLLE GADVN+R+
Sbjct: 3  NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 50.7 bits (122), Expect = 3e-08
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)

Query: 17 AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN 75
          AAR+G+    K+LL+    +      G  N+ LH AA  G+ EIV LLLE+GAD+N ++
Sbjct: 35 AARNGNLEIVKLLLEHGADVNAKDKDG--NTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 55.5 bits (133), Expect = 4e-08
 Identities = 63/197 (31%), Positives = 89/197 (45%), Gaps = 60/197 (30%)

Query: 46  NSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
            +PLH A+    N +IV  LLE GA+VN+R+YC           +T +H+AAV  +V   
Sbjct: 342 ITPLHQASTLDRNKDIVITLLELGANVNARDYC----------DKTPIHYAAVRNNV--- 388

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA--A 162
                         ++NT +  D G         D  ALS+ +        TALH A   
Sbjct: 389 -------------VIINTLL--DYG--------ADIEALSQKIG-------TALHFALCG 418

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK--CCQVLLSRG 220
            N Y   V+ L+D  ANV++       + DL    STPLH+ AC  N K    ++LL  G
Sbjct: 419 TNPYMS-VKTLIDRGANVNS------KNKDL----STPLHY-ACKKNCKLDVIEMLLDNG 466

Query: 221 ASRMSLNCNGWLPLDVA 237
           A   ++N     PL +A
Sbjct: 467 ADVNAINIQNQYPLLIA 483

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 54.6 bits (131), Expect = 5e-08
 Identities = 61/272 (22%), Positives = 100/272 (36%), Gaps = 66/272 (24%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD--- 70
           L+ A R GD    ++ +     +   +T   +  PL  A   G ++I+ LL++NG D   
Sbjct: 39  LIDAIRSGDAKIVELFIKHGADINHINT--KIPHPLLTAIKIGAHDIIKLLIDNGVDTSI 96

Query: 71  ----------VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 120
                     + +   CG          +T LH+A   G +                E +
Sbjct: 97  LPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDL----------------ESI 140

Query: 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 180
               E    D                VN   D G   +H+A  + +FD ++LLL+  A  
Sbjct: 141 KMLFEY-GAD----------------VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA 183

Query: 181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN-GWLPLDVARM 239
           +    +          G +PLH AA  G+  C ++L+  G + +   C  G+ PL  A +
Sbjct: 184 NVKDNN----------GESPLHNAAEYGDYACIKLLIDHG-NHIMNKCKNGFTPLHNAII 232

Query: 240 WGRHWLEPLLAPSS------DAVMPRFHPSNY 265
             R  +E L+  +S      D   P  H  N 
Sbjct: 233 HNRSAIELLINNASINDQDIDGSTPLHHAINP 264

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 46/172 (26%), Positives = 65/172 (37%), Gaps = 47/172 (27%)

Query: 47  SPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVR--- 102
           S L  AA +  N E+  LLL                      G T LH A    +V    
Sbjct: 54  SALFVAAIENENLELTELLLNLSCRGAV--------------GDTLLH-AISLEYVDAVE 98

Query: 103 -CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
             +  ++A F  S P E+ N Q               + +            GITALH+A
Sbjct: 99  AILLHLLAAFRKSGPLELANDQ------------YTSEFTP-----------GITALHLA 135

Query: 162 ALNGYFDCVQLLLDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGN 209
           A    ++ V+LLL+  A+V A      F     +D    G +PL+ AAC G+
Sbjct: 136 AHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGS 187

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 53.1 bits (127), Expect = 2e-07
 Identities = 66/235 (28%), Positives = 97/235 (41%), Gaps = 40/235 (17%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA-AKGHNEIVALLLENGADVN 72
           L+ A R+ D   + +L D    +         N+PLH A+ A   + +V  LLE GADVN
Sbjct: 244 LLKAIRNEDLETSLLLYDAGFSVNSIDDCK--NTPLHHASQAPSLSRLVPKLLERGADVN 301

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGH-VRCIRLVV--------ADFVPSVPFEVMNTQ 123
           ++N          + G T L+  A NG+    IR ++        AD +   P    +T 
Sbjct: 302 AKN----------IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTL 351

Query: 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
              DR     +        L   VN       T +H AA+      +  LLD  A++ A+
Sbjct: 352 ---DRNKDIVIT----LLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL 404

Query: 184 TFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           +   GT+          LHFA CG N     + L+ RGA+  S N +   PL  A
Sbjct: 405 SQKIGTA----------LHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYA 449

Length = 682

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 55/229 (24%), Positives = 82/229 (35%), Gaps = 66/229 (28%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A + GD    KML +    +      G    P+H A      +I+ LLLE GA  N 
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDNG--CYPIHIAIKHNFFDIIKLLLEKGAYANV 185

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
           ++           +G + LH AA  G   CI+L++                      G+ 
Sbjct: 186 KDN----------NGESPLHNAAEYGDYACIKLLID--------------------HGNH 215

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA-NVSAVTFHYGTSMD 192
           + +KC               G T LH A ++     ++LL++  + N   +         
Sbjct: 216 IMNKCKN-------------GFTPLHNAIIHNR-SAIELLINNASINDQDID-------- 253

Query: 193 LIGAGSTPLHFAACGGNLKC----CQVLLSRGASRMSLNCNGWLPLDVA 237
               GSTPLH A    N  C      +LL   A     +  G  P+D A
Sbjct: 254 ----GSTPLHHAI---NPPCDIDIIDILLYHKADISIKDNKGENPIDTA 295

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 50.2 bits (119), Expect = 5e-07
 Identities = 42/142 (29%), Positives = 58/142 (40%), Gaps = 12/142 (8%)

Query: 147 VNKAADGGITALHMAALNG-----YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 201
           VN     G T LH+AALNG       +  +LLL+  A++           D  G   TPL
Sbjct: 99  VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNN-----LRDEDGN--TPL 151

Query: 202 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFH 261
           H+AA  G+    ++LL  GA   S N  G   LD A   GR  L  LL      +     
Sbjct: 152 HWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKF 211

Query: 262 PSNYLSLPLLSVLNVARECGLL 283
               ++   +S  N+     L+
Sbjct: 212 NLEGVANANVSKRNILNLTSLI 233

Length = 235

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.5 bits (111), Expect = 5e-07
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           TALH AA++G  + V+ LL+   +++               G+T LH AA  GNL+  ++
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTD----------EDGNTALHIAAENGNLEVLKL 52

Query: 216 LL 217
           LL
Sbjct: 53  LL 54

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 15/31 (48%), Positives = 22/31 (70%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVT 184
           G T LH+AA NG+ + V+LLL+  A+V+A  
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 29 LLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG 88
          LL+  P     +   G N+PLH AA  G  E+V  LL+ G D+N R+  G          
Sbjct: 1  LLEHGPIDLNATDGNG-NTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL--------- 50

Query: 89 RTALHFA 95
           TAL  A
Sbjct: 51 -TALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.5 bits (103), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 195 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           G G+TPLH AA  G L+  Q LL  G      + +G   LD+A
Sbjct: 14  GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 48/193 (24%), Positives = 77/193 (39%), Gaps = 49/193 (25%)

Query: 4   SFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVAL 63
           S G +A  E L+ A  D D  ++K                   +PLH AA+KG+ + V +
Sbjct: 534 STGNAALLEELLKAKLDPDIGDSKG-----------------RTPLHIAASKGYEDCVLV 576

Query: 64  LLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123
           LL++  +V+ R+           +G TAL  A    H +  R ++  F       + +  
Sbjct: 577 LLKHACNVHIRD----------ANGNTALWNAISAKHHKIFR-ILYHFA-----SISDPH 620

Query: 124 IEGD-------RGDGSSVKSKCDQSALSKF---VNKAADGGITALHMAALNGYFDCVQLL 173
             GD       R D +++K       L K    V+     G TAL +A    + D V+LL
Sbjct: 621 AAGDLLCTAAKRNDLTAMK------ELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLL 674

Query: 174 LDLHANVSAVTFH 186
           +   A+V      
Sbjct: 675 IMNGADVDKANTD 687

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
           G+TPLH AA  G+L+  ++LL  GA   + +
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 57/192 (29%)

Query: 36  LAKYST-----FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT 90
           L K+       +  + S LH A  +G  + V  LL+ G   +            Y  G T
Sbjct: 54  LMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADD---------VFYKDGMT 104

Query: 91  ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA 150
            LH A +   +  ++L++A                          +  D     KF    
Sbjct: 105 PLHLATILKKLDIMKLLIA------------------------RGADPDIPNTDKF---- 136

Query: 151 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
                + LH+A + G    ++LL+D          H          G TPL  A   G++
Sbjct: 137 -----SPLHLAVMMGDIKGIELLID----------HKACLDIEDCCGCTPLIIAMAKGDI 181

Query: 211 KCCQVLLSRGAS 222
             C++LL  GA+
Sbjct: 182 AICKMLLDSGAN 193

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 15/27 (55%), Positives = 20/27 (74%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVN 72
           +PLH AA  G+ E+V LLL+ GAD+N
Sbjct: 3  RTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 17/27 (62%), Positives = 22/27 (81%)

Query: 46 NSPLHFAAAKGHNEIVALLLENGADVN 72
          N+PLH AA  G+ E+V LLLE+GAD+N
Sbjct: 3  NTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 6e-05
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 33/87 (37%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           GRTALH AA++G +  ++ ++   V                                  +
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVD---------------------------------I 27

Query: 148 NKAADGGITALHMAALNGYFDCVQLLL 174
           N+  + G TALH+AA NG  + ++LLL
Sbjct: 28  NRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 36/144 (25%), Positives = 60/144 (41%), Gaps = 43/144 (29%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           NSPLH A    +  IV +LLENGA  ++R+ CG           T LH +       C  
Sbjct: 202 NSPLHHAVKHYNKPIVHILLENGASTDARDKCGN----------TPLHISV----GYCKD 247

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
                      ++++   +E     G  V +K     L          G+TALH +  + 
Sbjct: 248 -----------YDILKLLLE----HGVDVNAK--SYIL----------GLTALHSSIKSE 280

Query: 166 YFDCVQLLLDLHANVSAVTFHYGT 189
               ++LLL+  A+++++  +  T
Sbjct: 281 --RKLKLLLEYGADINSLNSYKLT 302

Length = 477

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 44.3 bits (105), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 13/80 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH+A    + E V  LL+ GA+ N  N            G T LH A +N +    +
Sbjct: 193 FTPLHYAVYNNNPEFVKYLLDLGANPNLVNK----------YGDTPLHIAILNNNKEIFK 242

Query: 106 LVVADFVPSVPFEVMNTQIE 125
           L++ +  PS+  + +   + 
Sbjct: 243 LLL-NNGPSI--KTIIETLL 259

Length = 422

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 25/110 (22%)

Query: 53  AAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---A 109
           AA G      +LL  GAD N R+Y           GRT LH A  NGHV+ +R+++   A
Sbjct: 90  AASGDAVGARILLTGGADPNCRDY----------DGRTPLHIACANGHVQVVRVLLEFGA 139

Query: 110 DFVPSV-------PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD 152
           D  P++       P E+     E    +   + S+  Q       N   D
Sbjct: 140 D--PTLLDKDGKTPLEL---AEENGFREVVQLLSRHSQCHFELGANAKPD 184

Length = 664

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 56/236 (23%), Positives = 95/236 (40%), Gaps = 65/236 (27%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           +P+H+AA +G+ ++V LLL  GADVN             L   + L  A  + ++  I+ 
Sbjct: 180 TPIHYAAERGNAKMVNLLLSYGADVNIIA----------LDDLSVLECAVDSKNIDTIKA 229

Query: 107 VVADFVP------SVPFEVMNTQIEGD---RGDGSSVKS-----------KCDQSALSKF 146
           ++ +         S+   + N  +E        G SV S                +LS+ 
Sbjct: 230 IIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRL 289

Query: 147 VNKAADGGI----------TALHMAALNGY-FDCVQLLLDLHANVSA------VTFHYGT 189
           V K  + G           T L++ A NGY  + ++ L+ L A+V+A         H  +
Sbjct: 290 VPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQAS 349

Query: 190 SMD--------LIGAGS----------TPLHFAACGGNLKCCQVLLSRGASRMSLN 227
           ++D        L+  G+          TP+H+AA   N+     LL  GA   +L+
Sbjct: 350 TLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS 405

Length = 682

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 17/129 (13%)

Query: 11  GERLVSAARDG--DFVEAKMLL-------DCNPCLAKYSTFGGLN---SPLHFAAAKGHN 58
           G+ L+ A      D VEA +L             LA            + LH AA + + 
Sbjct: 82  GDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNY 141

Query: 59  EIVALLLENGADVNSR---NYCGQVTRADYLS-GRTALHFAAVNGHVRCIRLVVAD-FVP 113
           EIV LLLE GA V +R   ++  +    D    G + L+ AA  G    + L+  D    
Sbjct: 142 EIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI 201

Query: 114 SVPFEVMNT 122
                + NT
Sbjct: 202 LTADSLGNT 210

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 15/29 (51%), Positives = 21/29 (72%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSA 182
           G T LH+AA NG  + V+LLLD  A+++A
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 38/168 (22%), Positives = 51/168 (30%), Gaps = 59/168 (35%)

Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 118
           EI  LLL  GAD+N +         D   G TALH+A  N   R   L+++         
Sbjct: 148 EITKLLLSYGADINMK---------DRHKGNTALHYATENKDQRLTELLLS--------- 189

Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178
                     G   ++  K + S L   V       +  L                    
Sbjct: 190 ---------YGANVNIPDKTNNSPLHHAVKHYNKPIVHIL-------------------- 220

Query: 179 NVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQV---LLSRGAS 222
                    G S D     G+TPLH +   G  K   +   LL  G  
Sbjct: 221 ------LENGASTDARDKCGNTPLHISV--GYCKDYDILKLLLEHGVD 260

Length = 477

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSA 182
           G T LH+AA NG  + V+LLL+  A+++A
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 10/52 (19%)

Query: 153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204
            G T LH+AA  G  + VQ LL    +++               G T L  A
Sbjct: 15  NGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD----------GLTALDLA 56

Length = 56

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 42.0 bits (99), Expect = 7e-04
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 4/92 (4%)

Query: 142 ALSKFVNKAADGGITALHMAALNGY---FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS 198
            L   ++     G T LH  +L         +  LL        +             G 
Sbjct: 70  ELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 199 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 230
           T LH AA   N +  ++LL RGA  +     G
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGA-SVPARACG 160

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.4 bits (85), Expect = 9e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)

Query: 197 GSTPLHFAACGGNLKCCQVLLSRGAS 222
           G TPLH AA  GNL+  ++LL +GA 
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGAD 27

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 55/171 (32%)

Query: 27  KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN--EIVALLLENGADVNSRNYCGQVTRAD 84
           + LLD N          G N  LH          +I+ LL++ G D+N++N      R +
Sbjct: 125 EYLLD-NGANVNIKNSDGEN-LLHLYLESNKIDLKILKLLIDKGVDINAKN------RVN 176

Query: 85  YL------------SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS 132
           YL             G T LH+A  N +                 E +   ++       
Sbjct: 177 YLLSYGVPINIKDVYGFTPLHYAVYNNNP----------------EFVKYLLD------- 213

Query: 133 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
                     L    N     G T LH+A LN   +  +LLL+   ++  +
Sbjct: 214 ----------LGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTI 254

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 40.8 bits (96), Expect = 0.001
 Identities = 48/196 (24%), Positives = 70/196 (35%), Gaps = 50/196 (25%)

Query: 46  NSPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQVTRADYLSGRTALH----FAAVN 98
            +PLH     G N   +++ LLL  GADVN+ +          L G T L         N
Sbjct: 118 RTPLH-VYLSGFNINPKVIRLLLRKGADVNALD----------LYGMTPLAVLLKSRNAN 166

Query: 99  GHVRCIRLVVA--------DFVPSVPFEVMNTQIEGDRGDGSS-VKSKCDQSALSKFVNK 149
             V  +RL++         D              +         +++ CD +A     N 
Sbjct: 167 --VELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGN- 223

Query: 150 AADGGITALHMAALNGYFDCVQLLLD--LHANVSA-VTFHYGTSMDLIGAGSTPLHFAAC 206
                 T LH  A      C + L+   L A +S      YG          TPLH+AA 
Sbjct: 224 ------TPLHSMAT--GSSCKRSLVLPLLIAGISINARNRYGQ---------TPLHYAAV 266

Query: 207 GGNLKCCQVLLSRGAS 222
             N + C+ L++ GA 
Sbjct: 267 FNNPRACRRLIALGAD 282

Length = 471

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 37/183 (20%), Positives = 55/183 (30%), Gaps = 58/183 (31%)

Query: 46  NSPLHFAAAKG--HNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAV-NGHVR 102
           N+PLH  A        +V  LL  G  +N+RN            G+T LH+AAV N    
Sbjct: 223 NTPLHSMATGSSCKRSLVLPLLIAGISINARN----------RYGQTPLHYAAVFNNPRA 272

Query: 103 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           C RL+                       G+              +N  +  G T L +  
Sbjct: 273 CRRLIAL---------------------GAD-------------INAVSSDGNTPLSLMV 298

Query: 163 LNGYFDCVQLLLDLHANVSAV--TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
            N     V+  L  + +   V  T +  +                      C   ++ RG
Sbjct: 299 RNNNGRAVRAALAKNPSAETVAATLNTASV---------AGGDIPSDATRLCVAKVVLRG 349

Query: 221 ASR 223
           A  
Sbjct: 350 AFS 352

Length = 471

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	489
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	100.0
PHA02875	413	ankyrin repeat protein; Provisional	99.98
PHA02874	434	ankyrin repeat protein; Provisional	99.98
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA02791	284	ankyrin-like protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.97
PHA03095	471	ankyrin-like protein; Provisional	99.97
PHA02859	209	ankyrin repeat protein; Provisional	99.97
PHA02946	446	ankyin-like protein; Provisional	99.97
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02876	682	ankyrin repeat protein; Provisional	99.97
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
KOG0508	615	consensus Ankyrin repeat protein [General function	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
KOG0510	929	consensus Ankyrin repeat protein [General function	99.96
PHA02989	494	ankyrin repeat protein; Provisional	99.96
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02875	413	ankyrin repeat protein; Provisional	99.95
PHA02917	661	ankyrin-like protein; Provisional	99.95
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02859	209	ankyrin repeat protein; Provisional	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.92
PHA02730	672	ankyrin-like protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
PHA02792	631	ankyrin-like protein; Provisional	99.91
PHA02730	672	ankyrin-like protein; Provisional	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.89
PHA02792	631	ankyrin-like protein; Provisional	99.88
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.86
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.84
PHA02743	166	Viral ankyrin protein; Provisional	99.84
PHA02884	300	ankyrin repeat protein; Provisional	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PHA02736	154	Viral ankyrin protein; Provisional	99.81
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.78
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.78
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.67
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.65
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.6
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.59
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.56
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.53
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.49
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.43
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.38
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.34
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.28
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.27
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.27
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.99
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.96
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.79
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.71
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.69
PF13606	30	Ank_3: Ankyrin repeat	98.69
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.68
PF13606	30	Ank_3: Ankyrin repeat	98.66
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.66
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.64
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.63
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.62
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.59
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.57
KOG0522	560	consensus Ankyrin repeat protein [General function	98.53
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.41
KOG0522	560	consensus Ankyrin repeat protein [General function	98.39
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.38
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.18
KOG0511	516	consensus Ankyrin repeat protein [General function	98.12
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.94
KOG2384	223	consensus Major histocompatibility complex protein	97.89
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.86
KOG2384	223	consensus Major histocompatibility complex protein	97.79
KOG0511	516	consensus Ankyrin repeat protein [General function	97.68
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.66
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.62
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	97.47
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	97.16
PHA02929	238	N1R/p28-like protein; Provisional	97.09
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.05
KOG2505	591	consensus Ankyrin repeat protein [General function	97.03
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.0
PHA02926	242	zinc finger-like protein; Provisional	96.79
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	96.76
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.75
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.74
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	96.55
PF14634	44	zf-RING_5: zinc-RING finger domain	96.51
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	96.38
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	96.35
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	96.2
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.97
KOG2505	591	consensus Ankyrin repeat protein [General function	95.96
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	95.94
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	95.9
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.88
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	95.88
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	95.74
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	95.38
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.05
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	94.95
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.91
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	94.9
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.67
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	94.53
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	94.17
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	93.17
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	92.88
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	92.81
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	92.7
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	90.95
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	90.54
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	90.41
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	90.01
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	89.6
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.36
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	88.1
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	87.59
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	87.12
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	86.38
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	83.17
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	82.61
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	81.48
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	81.26
COG5219	1525	Uncharacterized conserved protein, contains RING Z	80.12

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.1e-34  Score=257.74  Aligned_cols=195  Identities=30%  Similarity=0.384  Sum_probs=171.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHHHhCcHHHHHHHH-HcCCCCCCcCCCCCcccccCCCCCh
Q 011309           13 RLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LL-e~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +.+.++......-|+.|++..+ .++.+++.+ |+||||||+..|+.+||.+|+ +.+..+|.+|.          .|||
T Consensus         6 ~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD-~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDd----------aGWt   74 (226)
T KOG4412|consen    6 LGKAICENCEEFKVEELIQSDPKSLNARDDQD-GRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDD----------AGWT   74 (226)
T ss_pred             hHHHHHhhchHHHHHHHHhcChhhhhcccccc-CCceeeeeeecCchhHHHHHHhcCCCCCCCccc----------cCCc
Confidence            4778888888889999999888 566665533 499999999999999999999 55888999887          9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  170 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v  170 (489)
                      |||+|+..|+.++|+.|+...                                +..+|..++.|.|+||||+..|+.+++
T Consensus        75 Plhia~s~g~~evVk~Ll~r~--------------------------------~advna~tn~G~T~LHyAagK~r~eIa  122 (226)
T KOG4412|consen   75 PLHIAASNGNDEVVKELLNRS--------------------------------GADVNATTNGGQTCLHYAAGKGRLEIA  122 (226)
T ss_pred             hhhhhhhcCcHHHHHHHhcCC--------------------------------CCCcceecCCCcceehhhhcCChhhHH
Confidence            999999999999999999651                                123889999999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh-
Q 011309          171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-  249 (489)
Q Consensus       171 ~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL-  249 (489)
                      ++|+++|+.++.+|..          |.||||.|+.-|+++++++|+..|+.+|.+|+.|+||||.|.-.|+.++..+| 
T Consensus       123 qlLle~ga~i~~kD~~----------~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV  192 (226)
T KOG4412|consen  123 QLLLEKGALIRIKDKQ----------GQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLV  192 (226)
T ss_pred             HHHHhcCCCCcccccc----------cCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHH
Confidence            9999999999999987          99999999999999999999999999999999999999999888999876666 


Q ss_pred             cCCCCCCCCCC
Q 011309          250 APSSDAVMPRF  260 (489)
Q Consensus       250 ~~~~~~~~~~~  260 (489)
                      ..+++.++.+.
T Consensus       193 ~~gAd~~~edk  203 (226)
T KOG4412|consen  193 RAGADTDREDK  203 (226)
T ss_pred             Hhccceeeccc
Confidence            45666665543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=9.8e-34  Score=251.74  Aligned_cols=176  Identities=29%  Similarity=0.367  Sum_probs=161.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~   87 (489)
                      .+.+|||+|+..|+.++|++|++ .+++...+++..||||||+|+..|+.|+|+.|+.+ |+|+|..++          .
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn----------~  105 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTN----------G  105 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHh-cCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecC----------C
Confidence            45679999999999999999996 34444444455669999999999999999999998 999999998          9


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |.|+||||+..|+.+|+++|++.++.                                 ++.+|..|+||||.||..|.+
T Consensus       106 G~T~LHyAagK~r~eIaqlLle~ga~---------------------------------i~~kD~~~qtplHRAAavGkl  152 (226)
T KOG4412|consen  106 GQTCLHYAAGKGRLEIAQLLLEKGAL---------------------------------IRIKDKQGQTPLHRAAAVGKL  152 (226)
T ss_pred             CcceehhhhcCChhhHHHHHHhcCCC---------------------------------CcccccccCchhHHHHhccch
Confidence            99999999999999999999987643                                 899999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  239 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~  239 (489)
                      +++++|+..|+.+|..|+.          |+||||.|..-|+.++..+|+++|||++..|++| ||+.+|.-
T Consensus       153 kvie~Li~~~a~~n~qDk~----------G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  153 KVIEYLISQGAPLNTQDKY----------GFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             hhHHHHHhcCCCCCccccc----------CccHHHHHHhccCchHHHHHHHhccceeeccccC-chHHHHHH
Confidence            9999999999999999987          9999999999999999999999999999999999 99888753

>PHA02791 ankyrin-like protein; Provisional

Probab=100.00  E-value=2e-32  Score=271.52  Aligned_cols=193  Identities=20%  Similarity=0.156  Sum_probs=167.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.|++++..+    ++||||+|+..|+.++|++|+++|++++.+|.          .|+
T Consensus        30 G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d----~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~----------~G~   95 (284)
T PHA02791         30 GHSALYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLFSGMDDSQFDD----------KGN   95 (284)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC----CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence            4579999999999999999999999876542    38999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCC-ccHHHHHHHcCCHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG-ITALHMAALNGYFD  168 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G-~TpLh~Aa~~g~~e  168 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++.++..| .||||+|+..|+.+
T Consensus        96 TpLh~Aa~~g~~eivk~Ll~~gad---------------------------------in~~~~~g~~TpL~~Aa~~g~~e  142 (284)
T PHA02791         96 TALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKTGWKTSFYHAVMLNDVS  142 (284)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC---------------------------------cCccCCCCCcHHHHHHHHcCCHH
Confidence            999999999999999999987543                                 66677777 48999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH-HHHHHHcCcHhHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP-LDVARMWGRHWLEP  247 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp-L~~A~~~g~~~i~~  247 (489)
                      +|++|++++++..  +..         .|.||||+|+..|+.++|++||++||+++.+|..|+|| ||+|+..|+.++++
T Consensus       143 ivk~LL~~~~~~~--d~~---------~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~  211 (284)
T PHA02791        143 IVSYFLSEIPSTF--DLA---------ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQ  211 (284)
T ss_pred             HHHHHHhcCCccc--ccc---------cCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            9999999876432  211         27899999999999999999999999999999999987 99999999999887


Q ss_pred             HhcC-CCCCCCCCC
Q 011309          248 LLAP-SSDAVMPRF  260 (489)
Q Consensus       248 LL~~-~~~~~~~~~  260 (489)
                      +|+. +++++..+.
T Consensus       212 lLl~~Ga~in~~~~  225 (284)
T PHA02791        212 ALFKYDINIYSVNL  225 (284)
T ss_pred             HHHHCCCCCccCcc
Confidence            7755 555555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.98  E-value=2.5e-31  Score=278.47  Aligned_cols=221  Identities=21%  Similarity=0.191  Sum_probs=186.1

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ++|+.|++.|++++|++|++.|++++.....+  .||||+|+..|+.++|++|+++|++++..+.          .+.||
T Consensus         4 ~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g--~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~----------~~~t~   71 (413)
T PHA02875          4 VALCDAILFGELDIARRLLDIGINPNFEIYDG--ISPIKLAMKFRDSEAIKLLMKHGAIPDVKYP----------DIESE   71 (413)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCccCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCccccCC----------CcccH
Confidence            57999999999999999999999988766554  9999999999999999999999999998877          89999


Q ss_pred             HHHHHHcCCHHHHHHHHHccCCC----CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           92 LHFAAVNGHVRCIRLVVADFVPS----VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      ||+|+..|+.+++++|++.+...    ...+.++++.+...+....+..+...   +..++..+..|.||||+|+..|+.
T Consensus        72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~---gad~~~~~~~g~tpLh~A~~~~~~  148 (413)
T PHA02875         72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIAR---GADPDIPNTDKFSPLHLAVMMGDI  148 (413)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhC---CCCCCCCCCCCCCHHHHHHHcCCH
Confidence            99999999999999999876532    23456777777777766665555433   345777888899999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC-cHHHHHHHcCcHhHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW-LPLDVARMWGRHWLE  246 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~-TpL~~A~~~g~~~i~  246 (489)
                      +++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++..+.+|. ||+|+|+..|+.+++
T Consensus       149 ~~v~~Ll~~g~~~~~~d~~----------g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv  218 (413)
T PHA02875        149 KGIELLIDHKACLDIEDCC----------GCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIV  218 (413)
T ss_pred             HHHHHHHhcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHH
Confidence            9999999999998888866          88999999999999999999999999998888774 788889999999887


Q ss_pred             HHhcC-CCCCCC
Q 011309          247 PLLAP-SSDAVM  257 (489)
Q Consensus       247 ~LL~~-~~~~~~  257 (489)
                      ++|.. +++.++
T Consensus       219 ~~Ll~~gad~n~  230 (413)
T PHA02875        219 RLFIKRGADCNI  230 (413)
T ss_pred             HHHHHCCcCcch
Confidence            77755 444444

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.98  E-value=9.1e-31  Score=276.22  Aligned_cols=268  Identities=21%  Similarity=0.197  Sum_probs=206.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCC-CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPC-LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~-l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      ..|..|+..|+++.|+.|++.+.. ++.....+  .||||+|+..|+.++|++|+++|++++..+.          .|.|
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~--~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~----------~~~t   70 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDET--TTPLIDAIRSGDAKIVELFIKHGADINHINT----------KIPH   70 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCC
Confidence            469999999999999999987654 44444443  8999999999999999999999999999987          8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  170 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v  170 (489)
                      |||+|+..|+.+++++|++.+.......       ........+..   ....+..++.++..|.||||+|+..|+.++|
T Consensus        71 ~L~~A~~~~~~~iv~~Ll~~g~~~~~~~-------~~~~~~~~i~~---ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v  140 (434)
T PHA02874         71 PLLTAIKIGAHDIIKLLIDNGVDTSILP-------IPCIEKDMIKT---ILDCGIDVNIKDAELKTFLHYAIKKGDLESI  140 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCcch-------hccCCHHHHHH---HHHCcCCCCCCCCCCccHHHHHHHCCCHHHH
Confidence            9999999999999999999876543211       11111111111   1223445788899999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       171 ~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      ++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|.
T Consensus       141 ~~Ll~~gad~n~~d~~----------g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll  210 (434)
T PHA02874        141 KMLFEYGADVNIEDDN----------GCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLI  210 (434)
T ss_pred             HHHHhCCCCCCCcCCC----------CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999998866          999999999999999999999999999999999999999999999999988887


Q ss_pred             CCCCCCCCCCCCCCCcchhhHHHHHH----------------HHHcCCccccccCCC--CcchhhhhhhhcccccccCCc
Q 011309          251 PSSDAVMPRFHPSNYLSLPLLSVLNV----------------ARECGLLSSTTSSSD--DADTCAVCLERACTVAAEGCR  312 (489)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~pl~~~l~~----------------a~~~G~~~~~~a~~~--~~~~C~iCle~~~~v~~~~C~  312 (489)
                      ..+.....   .+..+.+|++.++..                ....|+++++.+...  ..+.....++..+++....-.
T Consensus       211 ~~g~~i~~---~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad~n~~d~~  287 (434)
T PHA02874        211 DHGNHIMN---KCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNK  287 (434)
T ss_pred             hCCCCCcC---CCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCCCCCCCCC
Confidence            76543211   244566776654321                122466666665433  245666777777777666555


Q ss_pred             ch
Q 011309          313 HE  314 (489)
Q Consensus       313 H~  314 (489)
                      .+
T Consensus       288 g~  289 (434)
T PHA02874        288 GE  289 (434)
T ss_pred             CC
Confidence            43

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.5e-31  Score=280.60  Aligned_cols=204  Identities=25%  Similarity=0.252  Sum_probs=168.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHH-------------------------------
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE-------------------------------   59 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~e-------------------------------   59 (489)
                      .+|||.||+.|+.++|++|++.|++++..+..+  .||||+|+..|+.+                               
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g--~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~e  115 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRD--LTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVE  115 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHH
Confidence            479999999999999999999999998877655  99999999876654                               


Q ss_pred             ---------------------------------HHHHHHHcCCCCCCcCCCCCcccccCCC-CChHHHHHHHcCCHHHHH
Q 011309           60 ---------------------------------IVALLLENGADVNSRNYCGQVTRADYLS-GRTALHFAAVNGHVRCIR  105 (489)
Q Consensus        60 ---------------------------------ivk~LLe~Gad~n~~d~~g~i~~~d~~~-G~TpLh~Aa~~g~~~~vk  105 (489)
                                                       ++++|+++|++++..+.          . |.||||+|+..|+.++++
T Consensus       116 i~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~----------~~g~tpLh~A~~~~~~~iv~  185 (477)
T PHA02878        116 IFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDR----------HKGNTALHYATENKDQRLTE  185 (477)
T ss_pred             HHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCC----------CCCCCHHHHHHhCCCHHHHH
Confidence                                             55556666666666665          5 999999999999999999


Q ss_pred             HHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccc
Q 011309          106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF  185 (489)
Q Consensus       106 ~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~  185 (489)
                      +|++.++.                                 ++..|..|.||||+|+..|+.+++++|++.|++++..+.
T Consensus       186 ~Ll~~gad---------------------------------~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~  232 (477)
T PHA02878        186 LLLSYGAN---------------------------------VNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDK  232 (477)
T ss_pred             HHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCC
Confidence            99977544                                 778888999999999999999999999999999999887


Q ss_pred             cCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCcHhHHHHhc-CCCCCCCCCCCC
Q 011309          186 HYGTSMDLIGAGSTPLHFAACG-GNLKCCQVLLSRGASRMSLNC-NGWLPLDVARMWGRHWLEPLLA-PSSDAVMPRFHP  262 (489)
Q Consensus       186 ~~~~~~~~~~~G~TpLh~Aa~~-g~~eivk~LL~~Gadvn~~d~-~G~TpL~~A~~~g~~~i~~LL~-~~~~~~~~~~~~  262 (489)
                      .          |.||||+|+.. ++.+++++|+++|++++.++. .|+||||+|  .++.+++++|. .+++++..    
T Consensus       233 ~----------g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~----  296 (477)
T PHA02878        233 C----------GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSL----  296 (477)
T ss_pred             C----------CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCc----
Confidence            6          99999999975 689999999999999999875 799999999  45666666554 45666655    


Q ss_pred             CCCcchhhHHHHH
Q 011309          263 SNYLSLPLLSVLN  275 (489)
Q Consensus       263 ~~~~~~pl~~~l~  275 (489)
                      +..+.+|++.++.
T Consensus       297 d~~g~TpL~~A~~  309 (477)
T PHA02878        297 NSYKLTPLSSAVK  309 (477)
T ss_pred             CCCCCCHHHHHHH
Confidence            4556678765543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.8e-31  Score=275.98  Aligned_cols=225  Identities=22%  Similarity=0.236  Sum_probs=146.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCC----------
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCG----------   78 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g----------   78 (489)
                      ...||||.|++.|+.++|++|++.|++++.....+  .||||+|+..|+.++|++|+++|++++......          
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~--~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll  111 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKI--PHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTIL  111 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHH
Confidence            34689999999999999999999999998766655  899999999999999999998886643211000          


Q ss_pred             ---CcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccC
Q 011309           79 ---QVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD  152 (489)
Q Consensus        79 ---~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~  152 (489)
                         .-....+..|.||||+|+..|+.++|++|++.+...   +..+.++++.+...+....+..+...   +..++..+.
T Consensus       112 ~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~---g~~~n~~~~  188 (434)
T PHA02874        112 DCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEK---GAYANVKDN  188 (434)
T ss_pred             HCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHC---CCCCCCCCC
Confidence               000111238999999999999999999999876642   22344455555554444433333222   223455555


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc
Q 011309          153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL  232 (489)
Q Consensus       153 ~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~T  232 (489)
                      .|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|+..+. +++++|+ .|++++.+|.+|+|
T Consensus       189 ~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~----------g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~T  256 (434)
T PHA02874        189 NGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKN----------GFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGST  256 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCC----------CCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCC
Confidence            6666666666666666666666666666555543          6666666665543 3444444 45666666666666


Q ss_pred             HHHHHHHcC-cHhHHHHhc
Q 011309          233 PLDVARMWG-RHWLEPLLA  250 (489)
Q Consensus       233 pL~~A~~~g-~~~i~~LL~  250 (489)
                      |||+|+..+ +.+++++|.
T Consensus       257 pLh~A~~~~~~~~iv~~Ll  275 (434)
T PHA02874        257 PLHHAINPPCDIDIIDILL  275 (434)
T ss_pred             HHHHHHhcCCcHHHHHHHH
Confidence            666666554 445544443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=8.2e-31  Score=279.56  Aligned_cols=235  Identities=26%  Similarity=0.286  Sum_probs=202.2

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHH-----HHHhCcHHHHHHHHHcCCCCCCcCCCCCcccc
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHF-----AAAKGHNEIVALLLENGADVNSRNYCGQVTRA   83 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~-----Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~   83 (489)
                      ...+|||.|++.|+.++|++|++.|++++.....+  .||||+     |+..|+.+++++|+++|++++..|.       
T Consensus        34 ~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~--~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~-------  104 (480)
T PHA03100         34 KPVLPLYLAKEARNIDVVKILLDNGADINSSTKNN--STPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDN-------  104 (480)
T ss_pred             ccchhhhhhhccCCHHHHHHHHHcCCCCCCccccC--cCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCC-------
Confidence            44689999999999999999999999988766655  899999     9999999999999999999999988       


Q ss_pred             cCCCCChHHHHHH--HcCCHHHHHHHHHccCCC---CCccccccccccccC--CchhhhhhhhhhhhhhhhccccCCCcc
Q 011309           84 DYLSGRTALHFAA--VNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRG--DGSSVKSKCDQSALSKFVNKAADGGIT  156 (489)
Q Consensus        84 d~~~G~TpLh~Aa--~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~in~~d~~G~T  156 (489)
                         .|.||||+|+  ..|+.+++++|++.+...   +..+.++++.+...+  ....+..+...   +..++.+|..|.|
T Consensus       105 ---~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~---g~din~~d~~g~t  178 (480)
T PHA03100        105 ---NGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK---GVDINAKNRYGYT  178 (480)
T ss_pred             ---CCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC---CCCcccccCCCCC
Confidence               8999999999  999999999999987654   345667788877777  55554444333   3457888899999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCC------CcHHHHHHHcCC--HHHHHHHHHcCCCCCccCC
Q 011309          157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAG------STPLHFAACGGN--LKCCQVLLSRGASRMSLNC  228 (489)
Q Consensus       157 pLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G------~TpLh~Aa~~g~--~eivk~LL~~Gadvn~~d~  228 (489)
                      |||+|+..|+.+++++|+++|++++..+..          |      .||||+|+..|+  .+++++|+++|++++.+|.
T Consensus       179 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~----------~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~  248 (480)
T PHA03100        179 PLHIAVEKGNIDVIKFLLDNGADINAGDIE----------TLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDV  248 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccCCCCC----------CCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999999999988765          5      899999999999  9999999999999999999


Q ss_pred             CCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHH
Q 011309          229 NGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       229 ~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~  272 (489)
                      .|+||||+|+..|+.+++++|... ++++..    +..+.+|+..
T Consensus       249 ~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~----d~~g~tpl~~  289 (480)
T PHA03100        249 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLV----NKYGDTPLHI  289 (480)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcc----CCCCCcHHHH
Confidence            999999999999999998877664 444443    4566677544

>PHA02791 ankyrin-like protein; Provisional

Probab=99.97  E-value=6.1e-31  Score=260.88  Aligned_cols=180  Identities=19%  Similarity=0.202  Sum_probs=159.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC-
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG-   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G-   88 (489)
                      ..||||.|+..|+.++|++|++.|++++..+..+  +||||+|+..|+.++|++|+++|++++.++.          .| 
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G--~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~----------~g~  128 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKG--NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK----------TGW  128 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCcCccCC----------CCC
Confidence            3689999999999999999999999998877665  9999999999999999999999999999887          67 


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCCH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYF  167 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~  167 (489)
                      .||||+|+..|+.++|++|++.+..                                   ..| ..|.||||+|+.+|+.
T Consensus       129 ~TpL~~Aa~~g~~eivk~LL~~~~~-----------------------------------~~d~~~g~TpLh~Aa~~g~~  173 (284)
T PHA02791        129 KTSFYHAVMLNDVSIVSYFLSEIPS-----------------------------------TFDLAILLSCIHITIKNGHV  173 (284)
T ss_pred             cHHHHHHHHcCCHHHHHHHHhcCCc-----------------------------------ccccccCccHHHHHHHcCCH
Confidence            4999999999999999999975311                                   112 2489999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      ++|++|+++|++++..+..          |.|| ||+|+..|+.++|++|+++|++++.+|..| ++|      ++.+++
T Consensus       174 eiv~lLL~~gAd~n~~d~~----------g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~-~~l------~~~e~~  236 (284)
T PHA02791        174 DMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN-VLL------DDAEIA  236 (284)
T ss_pred             HHHHHHHHCCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC-ccC------CCHHHH
Confidence            9999999999999998866          7776 999999999999999999999999999955 666      788888


Q ss_pred             HHhcCCC
Q 011309          247 PLLAPSS  253 (489)
Q Consensus       247 ~LL~~~~  253 (489)
                      ++|++..
T Consensus       237 ~~ll~~~  243 (284)
T PHA02791        237 KMIIEKH  243 (284)
T ss_pred             HHHHHhh
Confidence            8887543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=5e-30  Score=272.80  Aligned_cols=234  Identities=22%  Similarity=0.188  Sum_probs=182.1

Q ss_pred             chHHHHHHHHcC---CHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhC-cHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309           10 SGERLVSAARDG---DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG-HNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus        10 s~t~L~~Aa~~G---~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G-~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      ..||||.|+..|   +.++|++|++.|++++..+..|  .||||+|+..| +.+++++|+++|++++.+|.         
T Consensus        47 g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g--~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~---------  115 (471)
T PHA03095         47 GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCG--FTPLHLYLYNATTLDVIKLLIKAGADVNAKDK---------  115 (471)
T ss_pred             CCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCC---------
Confidence            457999999999   9999999999999999887755  99999999999 59999999999999999998         


Q ss_pred             CCCChHHHHHH--HcCCHHHHHHHHHccCCCC---CccccccccccccCCc--hhhhhhhhhhhhhhhhccccCCCccHH
Q 011309           86 LSGRTALHFAA--VNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDG--SSVKSKCDQSALSKFVNKAADGGITAL  158 (489)
Q Consensus        86 ~~G~TpLh~Aa--~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~in~~d~~G~TpL  158 (489)
                       .|.||||+|+  ..++.+++++|++.+.+.+   ..+.++++.+......  ..+..+   ...+..++..|..|.|||
T Consensus       116 -~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~L---l~~g~~~~~~d~~g~t~L  191 (471)
T PHA03095        116 -VGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLL---IDAGADVYAVDDRFRSLL  191 (471)
T ss_pred             -CCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHH---HHcCCCCcccCCCCCCHH
Confidence             8999999999  5668999999999876543   3455666655444321  222222   122334555678888999


Q ss_pred             HHHHHc--CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCH--HHHHHHHHcCCCCCccCCCCCcHH
Q 011309          159 HMAALN--GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL--KCCQVLLSRGASRMSLNCNGWLPL  234 (489)
Q Consensus       159 h~Aa~~--g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~--eivk~LL~~Gadvn~~d~~G~TpL  234 (489)
                      |+|+..  ++.+++++|+++|++++..+..          |.||||+|+..|+.  .+++.|++.|+++|.+|..|+|||
T Consensus       192 h~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~----------g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpL  261 (471)
T PHA03095        192 HHHLQSFKPRARIVRELIRAGCDPAATDML----------GNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPL  261 (471)
T ss_pred             HHHHHHCCCcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            988865  6788889999999998888876          88888888888864  578888888888888888888888


Q ss_pred             HHHHHcCcHhHHHHhc-CCCCCCCCCCCCCCCcchhhHH
Q 011309          235 DVARMWGRHWLEPLLA-PSSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       235 ~~A~~~g~~~i~~LL~-~~~~~~~~~~~~~~~~~~pl~~  272 (489)
                      |+|+..|+.+++++|+ .++++++.    +..+.+|++.
T Consensus       262 h~A~~~~~~~~v~~LL~~gad~n~~----~~~g~tpl~~  296 (471)
T PHA03095        262 HYAAVFNNPRACRRLIALGADINAV----SSDGNTPLSL  296 (471)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHH
Confidence            8888888888766654 45555554    4455667543

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=5e-30  Score=270.75  Aligned_cols=219  Identities=21%  Similarity=0.152  Sum_probs=180.1

Q ss_pred             chHHHHHHH--HcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309           10 SGERLVSAA--RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus        10 s~t~L~~Aa--~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      ..+.||.++  ..++.++|++|+++|++++..+..+  +||||+|+..|+.++|++||++|+++|.+|.          .
T Consensus        37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G--~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~----------~  104 (446)
T PHA02946         37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDG--NYPLHIASKINNNRIVAMLLTHGADPNACDK----------Q  104 (446)
T ss_pred             CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCC--CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCC----------C
Confidence            357888776  4557899999999999998877665  9999999999999999999999999999998          9


Q ss_pred             CChHHHHHHHcCC--HHHHHHHHHccCCCC----CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHH
Q 011309           88 GRTALHFAAVNGH--VRCIRLVVADFVPSV----PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA  161 (489)
Q Consensus        88 G~TpLh~Aa~~g~--~~~vk~LL~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~A  161 (489)
                      |+||||+|+..++  .+++++|++.++..+    ..+.++++ +...+....+..+.   ..+..++.+|..|.||||+|
T Consensus       105 g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll---~~gad~~~~d~~G~t~Lh~A  180 (446)
T PHA02946        105 HKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIM---SIGFEARIVDKFGKNHIHRH  180 (446)
T ss_pred             CCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHH---hccccccccCCCCCCHHHHH
Confidence            9999999998764  789999999887554    23444554 33334444333332   23456888999999999999


Q ss_pred             HHcC--CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 011309          162 ALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG--NLKCCQVLLSRGASRMSLNCNGWLPLDVA  237 (489)
Q Consensus       162 a~~g--~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g--~~eivk~LL~~Gadvn~~d~~G~TpL~~A  237 (489)
                      +..+  +.+++++|+++|++++..|..          |.||||+|+..|  +.+++++|++ |++++.+|..|+||||+|
T Consensus       181 ~~~~~~~~~~v~~Ll~~Gadin~~d~~----------G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A  249 (446)
T PHA02946        181 LMSDNPKASTISWMMKLGISPSKPDHD----------GNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLL  249 (446)
T ss_pred             HHhcCCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHH
Confidence            8755  578999999999999999876          999999999986  8899999985 999999999999999999


Q ss_pred             HHcCcH-hHHHHhcCCCCC
Q 011309          238 RMWGRH-WLEPLLAPSSDA  255 (489)
Q Consensus       238 ~~~g~~-~i~~LL~~~~~~  255 (489)
                      ++.++. +++++|...+..
T Consensus       250 ~~~~~~~~~~~~Ll~~g~~  268 (446)
T PHA02946        250 IKTLSPAHLINKLLSTSNV  268 (446)
T ss_pred             HHhCChHHHHHHHHhCCCC
Confidence            999884 777777666543

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=1.7e-30  Score=269.67  Aligned_cols=188  Identities=29%  Similarity=0.346  Sum_probs=129.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ...++.|++.|+++.|+.|++. |.+++..+.+  |.|+||+||.+++++++++|+++||++|..+.         .-+.
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~--g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG---------~l~s  113 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDRE--GVTLLHWAAINNRLDVARYLISHGADVNAIGG---------VLGS  113 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcC--CccceeHHHHcCcHHHHHHHHHcCCCccccCC---------CCCC
Confidence            4568999999999999999998 7777776664  48999999999999999999999999999874         2788


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||||+++|+..+|++|+++|++                                 ++.+|..|.||||+|++.|+.-.
T Consensus       114 tPLHWAar~G~~~vv~lLlqhGAd---------------------------------pt~~D~~G~~~lHla~~~~~~~~  160 (600)
T KOG0509|consen  114 TPLHWAARNGHISVVDLLLQHGAD---------------------------------PTLKDKQGLTPLHLAAQFGHTAL  160 (600)
T ss_pred             CcchHHHHcCcHHHHHHHHHcCCC---------------------------------CceecCCCCcHHHHHHHhCchHH
Confidence            999999999999999999998876                                 44445555555555555555555


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCcHhHHHH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN-CNGWLPLDVARMWGRHWLEPL  248 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d-~~G~TpL~~A~~~g~~~i~~L  248 (489)
                      |-|||.+|++++.+|.+          |+||||+|+.+|....++.||..|++++.+| ..|.||||+|+..|+..++.|
T Consensus       161 vayll~~~~d~d~~D~~----------grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~L  230 (600)
T KOG0509|consen  161 VAYLLSKGADIDLRDNN----------GRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKL  230 (600)
T ss_pred             HHHHHHhcccCCCcCCC----------CCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEeh
Confidence            55555555555555544          5555555555555444555555555555444 455555555555555544443


Q ss_pred             hcCC
Q 011309          249 LAPS  252 (489)
Q Consensus       249 L~~~  252 (489)
                      |.++
T Consensus       231 l~~g  234 (600)
T KOG0509|consen  231 LLEG  234 (600)
T ss_pred             hhhc
Confidence            3333

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.97  E-value=9.4e-30  Score=271.42  Aligned_cols=220  Identities=25%  Similarity=0.287  Sum_probs=195.4

Q ss_pred             chHHHHH-----HHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHH--HhCcHHHHHHHHHcCCCCCCcCCCCCccc
Q 011309           10 SGERLVS-----AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA--AKGHNEIVALLLENGADVNSRNYCGQVTR   82 (489)
Q Consensus        10 s~t~L~~-----Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa--~~G~~eivk~LLe~Gad~n~~d~~g~i~~   82 (489)
                      ..+|||.     |+..|+.+++++|++.|++++..+..+  .||||+|+  ..|+.++|++|+++|++++..+.      
T Consensus        68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g--~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~------  139 (480)
T PHA03100         68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNG--ITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS------  139 (480)
T ss_pred             CcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCC--CchhhHHHhcccChHHHHHHHHHcCCCCCccCC------
Confidence            3579999     999999999999999999997666555  89999999  99999999999999999999998      


Q ss_pred             ccCCCCChHHHHHHHcC--CHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCC---
Q 011309           83 ADYLSGRTALHFAAVNG--HVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG---  154 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g--~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G---  154 (489)
                          .|.||||+|+..|  +.+++++|++.+...   +..+.++++.+...+....+..+...   +..++..+..|   
T Consensus       140 ----~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~---ga~~~~~~~~~~~~  212 (480)
T PHA03100        140 ----DGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDN---GADINAGDIETLLF  212 (480)
T ss_pred             ----CCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHc---CCCccCCCCCCCcH
Confidence                8999999999999  999999999987654   33566788888888866665555433   34567777778   


Q ss_pred             ---ccHHHHHHHcCC--HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Q 011309          155 ---ITALHMAALNGY--FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN  229 (489)
Q Consensus       155 ---~TpLh~Aa~~g~--~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~  229 (489)
                         .||||+|+..|+  .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|+|++.+|..
T Consensus       213 ~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~----------g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~  282 (480)
T PHA03100        213 TIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVY----------GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKY  282 (480)
T ss_pred             HHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC
Confidence               899999999999  99999999999999999876          999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          230 GWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       230 G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      |+|||++|+..++.+++++|.+.+.
T Consensus       283 g~tpl~~A~~~~~~~iv~~Ll~~g~  307 (480)
T PHA03100        283 GDTPLHIAILNNNKEIFKLLLNNGP  307 (480)
T ss_pred             CCcHHHHHHHhCCHHHHHHHHhcCC
Confidence            9999999999999999888877554

>PHA03095 ankyrin-like protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=269.48  Aligned_cols=220  Identities=21%  Similarity=0.167  Sum_probs=185.5

Q ss_pred             CchHHHHHHHHcC-CHHHHHHHhhcCCCCcccCCCCCCchHHHHHH--HhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309            9 ASGERLVSAARDG-DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAA--AKGHNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus         9 ~s~t~L~~Aa~~G-~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa--~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      ...||||+|+..| ..+++++|++.|++++..+..+  +||||+|+  ..++.+++++|+++|++++..|.         
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g--~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~---------  150 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVG--RTPLHVYLSGFNINPKVIRLLLRKGADVNALDL---------  150 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCC--CCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCC---------
Confidence            3468999999999 5999999999999998877665  89999999  56689999999999999999998         


Q ss_pred             CCCChHHHHHHHcC--CHHHHHHHHHccCCCC---CccccccccccccC--CchhhhhhhhhhhhhhhhccccCCCccHH
Q 011309           86 LSGRTALHFAAVNG--HVRCIRLVVADFVPSV---PFEVMNTQIEGDRG--DGSSVKSKCDQSALSKFVNKAADGGITAL  158 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g--~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~in~~d~~G~TpL  158 (489)
                       .|.||||+|+..+  +.+++++|++.+....   ..+.++++.+....  ....+..+   ...+..++.+|..|.|||
T Consensus       151 -~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~L---l~~g~~~~~~d~~g~tpL  226 (471)
T PHA03095        151 -YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVREL---IRAGCDPAATDMLGNTPL  226 (471)
T ss_pred             -CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHH---HHcCCCCcccCCCCCCHH
Confidence             9999999999876  6899999999876443   34455555544332  22222222   233455789999999999


Q ss_pred             HHHHHcCCH--HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Q 011309          159 HMAALNGYF--DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV  236 (489)
Q Consensus       159 h~Aa~~g~~--e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~  236 (489)
                      |+|+..|+.  .+++.|++.|++++..+..          |+||||+|+..|+.++|++||++|||++.+|.+|+||||+
T Consensus       227 h~Aa~~~~~~~~~v~~ll~~g~din~~d~~----------g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~  296 (471)
T PHA03095        227 HSMATGSSCKRSLVLPLLIAGISINARNRY----------GQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSL  296 (471)
T ss_pred             HHHHhcCCchHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            999999975  6889999999999999966          9999999999999999999999999999999999999999


Q ss_pred             HHHcCcHhHHHHhcCCC
Q 011309          237 ARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       237 A~~~g~~~i~~LL~~~~  253 (489)
                      |+..|+.+++.+|+...
T Consensus       297 A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        297 MVRNNNGRAVRAALAKN  313 (471)
T ss_pred             HHHhCCHHHHHHHHHhC
Confidence            99999999988776644

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.8e-29  Score=240.60  Aligned_cols=174  Identities=20%  Similarity=0.242  Sum_probs=153.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhC--cHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG--HNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G--~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      .+|||.|+..|++++|+.|++..   +..+..  |.||||+|+..+  +.+++++|+++|+++|.++.         ..|
T Consensus        22 ~~pL~~A~~~~~~~~vk~Li~~~---n~~~~~--g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~---------~~g   87 (209)
T PHA02859         22 CNPLFYYVEKDDIEGVKKWIKFV---NDCNDL--YETPIFSCLEKDKVNVEILKFLIENGADVNFKTR---------DNN   87 (209)
T ss_pred             CcHHHHHHHhCcHHHHHHHHHhh---hccCcc--CCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCC---------CCC
Confidence            57899999999999999999863   333444  489999999855  89999999999999999863         179


Q ss_pred             ChHHHHHHHc---CCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH--
Q 011309           89 RTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--  163 (489)
Q Consensus        89 ~TpLh~Aa~~---g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~--  163 (489)
                      +||||+|+..   ++.+++++|++.+++                                 +|.+|..|.||||+|+.  
T Consensus        88 ~TpLh~a~~~~~~~~~eiv~~Ll~~gad---------------------------------in~~d~~G~TpLh~a~~~~  134 (209)
T PHA02859         88 LSALHHYLSFNKNVEPEILKILIDSGSS---------------------------------ITEEDEDGKNLLHMYMCNF  134 (209)
T ss_pred             CCHHHHHHHhCccccHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHhc
Confidence            9999998864   479999999987654                                 88899999999999986  


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309          164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF-AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  241 (489)
Q Consensus       164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~-Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g  241 (489)
                      .++.+++++|+++|++++.+|..          |.||||. |+..++.+++++|+++|++++.+|..|+|||++|+..+
T Consensus       135 ~~~~~iv~~Li~~gadin~~d~~----------g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        135 NVRINVIKLLIDSGVSFLNKDFD----------NNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             cCCHHHHHHHHHcCCCcccccCC----------CCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence            46899999999999999999876          9999995 56788999999999999999999999999999998764

>PHA02946 ankyin-like protein; Provisional

Probab=99.97  E-value=1.8e-29  Score=266.61  Aligned_cols=211  Identities=18%  Similarity=0.171  Sum_probs=173.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCc--HHHHHHHHHcCCCCCC-cCCCCCcccccCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH--NEIVALLLENGADVNS-RNYCGQVTRADYL   86 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~--~eivk~LLe~Gad~n~-~d~~g~i~~~d~~   86 (489)
                      ..||||+|++.|+.++|++||++|++++..+..+  .||||+|+..++  .+++++|+++|++++. .|.          
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g--~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~----------  139 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGADPNACDKQH--KTPLYYLSGTDDEVIERINLLVQYGAKINNSVDE----------  139 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCC--CCHHHHHHHcCCchHHHHHHHHHcCCCcccccCC----------
Confidence            4689999999999999999999999998877766  899999998764  8999999999999995 566          


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCc--hhhhhhhhhhhhhhhhccccCCCccHHHHH
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDG--SSVKSKCDQSALSKFVNKAADGGITALHMA  161 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~in~~d~~G~TpLh~A  161 (489)
                      .|.|||| |+..|+.+++++|++.+...   +..+.++++.+......  ..+..+   ...+..++.+|..|.||||+|
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~L---l~~Gadin~~d~~G~TpLH~A  215 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWM---MKLGISPSKPDHDGNTPLHIV  215 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHH---HHcCCCCcccCCCCCCHHHHH
Confidence            8999997 67789999999999876543   34556666665544332  222222   223456889999999999999


Q ss_pred             HHcC--CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          162 ALNG--YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       162 a~~g--~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                      +..|  +.+++++|++ |++++.++..          |.||||+|+..++ .+++++|+++|++++     ++| +++|+
T Consensus       216 a~~~~~~~~iv~lLl~-gadin~~d~~----------G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~-----~~~-~~~a~  278 (446)
T PHA02946        216 CSKTVKNVDIINLLLP-STDVNKQNKF----------GDSPLTLLIKTLSPAHLINKLLSTSNVIT-----DQT-VNICI  278 (446)
T ss_pred             HHcCCCcHHHHHHHHc-CCCCCCCCCC----------CCCHHHHHHHhCChHHHHHHHHhCCCCCC-----CcH-HHHHH
Confidence            9986  8899999995 8999999977          9999999999988 589999999997754     344 89999


Q ss_pred             HcCcHhHHHHhcCCC
Q 011309          239 MWGRHWLEPLLAPSS  253 (489)
Q Consensus       239 ~~g~~~i~~LL~~~~  253 (489)
                      ..++.+++++|...+
T Consensus       279 ~~~~~~~~e~l~~~g  293 (446)
T PHA02946        279 FYDRDDVLEIINDKG  293 (446)
T ss_pred             HcCchHHHHHHHHcC
Confidence            999999988887654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=4.9e-30  Score=266.27  Aligned_cols=176  Identities=32%  Similarity=0.437  Sum_probs=163.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      +.||+||.+++++++++||++|+++|.....- +.||||+|+++|+..+|++||++|||++.+|.          +|.||
T Consensus        80 tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l-~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~----------~G~~~  148 (600)
T KOG0509|consen   80 TLLHWAAINNRLDVARYLISHGADVNAIGGVL-GSTPLHWAARNGHISVVDLLLQHGADPTLKDK----------QGLTP  148 (600)
T ss_pred             cceeHHHHcCcHHHHHHHHHcCCCccccCCCC-CCCcchHHHHcCcHHHHHHHHHcCCCCceecC----------CCCcH
Confidence            46999999999999999999999999887533 38999999999999999999999999999998          99999


Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHH
Q 011309           92 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ  171 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~  171 (489)
                      ||+|++.||.-.|-+||..+++                                 +|.+|..|+||||+|+.+|+...+.
T Consensus       149 lHla~~~~~~~~vayll~~~~d---------------------------------~d~~D~~grTpLmwAaykg~~~~v~  195 (600)
T KOG0509|consen  149 LHLAAQFGHTALVAYLLSKGAD---------------------------------IDLRDNNGRTPLMWAAYKGFALFVR  195 (600)
T ss_pred             HHHHHHhCchHHHHHHHHhccc---------------------------------CCCcCCCCCCHHHHHHHhcccHHHH
Confidence            9999999999999999976533                                 8999999999999999999988899


Q ss_pred             HHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc
Q 011309          172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW  240 (489)
Q Consensus       172 ~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~  240 (489)
                      .|+..|+.++..|..         .|.||||+|+..|+..++++|++.|++.+.+|.+|.||+.+|...
T Consensus       196 ~LL~f~a~~~~~d~~---------~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  196 RLLKFGASLLLTDDN---------HGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccccccccc---------cCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence            999999999999954         499999999999999999988888999999999999999999665

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=7e-29  Score=276.00  Aligned_cols=115  Identities=29%  Similarity=0.287  Sum_probs=88.3

Q ss_pred             hhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCC-HHHHHHHHHcCCCC
Q 011309          145 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASR  223 (489)
Q Consensus       145 ~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-~eivk~LL~~Gadv  223 (489)
                      ..+|.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..++ ..++++|+++|+++
T Consensus       366 adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~----------g~T~Lh~A~~~~~~~~~vk~Ll~~gadi  435 (682)
T PHA02876        366 ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQK----------IGTALHFALCGTNPYMSVKTLIDRGANV  435 (682)
T ss_pred             CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCC----------CCchHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            446778888888888888888888888888888888887765          7888888887655 56788888889999


Q ss_pred             CccCCCCCcHHHHHHHcC-cHhHHHHhcC-CCCCCCCCCCCCCCcchhhHHH
Q 011309          224 MSLNCNGWLPLDVARMWG-RHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSV  273 (489)
Q Consensus       224 n~~d~~G~TpL~~A~~~g-~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~  273 (489)
                      |.+|.+|+||||+|+..+ +.+++++|.. +++++..    +..+.+|+..+
T Consensus       436 n~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~----d~~g~tpl~~a  483 (682)
T PHA02876        436 NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI----NIQNQYPLLIA  483 (682)
T ss_pred             CcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC----CCCCCCHHHHH
Confidence            888999999999998876 5677666654 4555444    45566776543

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.97  E-value=3.8e-29  Score=278.15  Aligned_cols=272  Identities=21%  Similarity=0.183  Sum_probs=189.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .++|+.|+..|+.+++++|++.|++++..+.++  +||||+|+..|+.++|++|+++|++++..+.          .|.|
T Consensus       146 ~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G--~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~----------~g~t  213 (682)
T PHA02876        146 MKLIKERIQQDELLIAEMLLEGGADVNAKDIYC--ITPIHYAAERGNAKMVNLLLSYGADVNIIAL----------DDLS  213 (682)
T ss_pred             hHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCC--CCHHHHHHHCCCHHHHHHHHHCCCCcCccCC----------CCCC
Confidence            357899999999999999999999999887665  9999999999999999999999999999987          8899


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCC--------------------------------CccccccccccccCCchhhhhhh
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSV--------------------------------PFEVMNTQIEGDRGDGSSVKSKC  138 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~--------------------------------~~~~~~l~~~~~~~~~~~~~~~~  138 (489)
                      |||+|+..|+.+++++|++.+....                                ..+.++++.+...+....+..++
T Consensus       214 ~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lL  293 (682)
T PHA02876        214 VLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL  293 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence            9999999999999988886543221                                12344444444433322111111


Q ss_pred             hhhhhhhhhccccCCCccHHHHHHHcC-CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHc-CCHHHHHHH
Q 011309          139 DQSALSKFVNKAADGGITALHMAALNG-YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG-GNLKCCQVL  216 (489)
Q Consensus       139 ~~~~~~~~in~~d~~G~TpLh~Aa~~g-~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~-g~~eivk~L  216 (489)
                        ...+..++..|..|.||||+|+..| ..+++++|+..|++++..+..          |.||||+|+.. ++.+++++|
T Consensus       294 --l~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~----------g~TpLh~A~~~~~~~~iv~lL  361 (682)
T PHA02876        294 --LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRL----------YITPLHQASTLDRNKDIVITL  361 (682)
T ss_pred             --HHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccC----------CCcHHHHHHHhCCcHHHHHHH
Confidence              1123346667777888888888777 477778888888777777765          77888888774 467788888


Q ss_pred             HHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHHH---------HH----------
Q 011309          217 LSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVL---------NV----------  276 (489)
Q Consensus       217 L~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~l---------~~----------  276 (489)
                      +++|++++.+|..|+||||+|+..|+.+++++|.+. ++.+..    +..+.+|++.++         +.          
T Consensus       362 l~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~----~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~  437 (682)
T PHA02876        362 LELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL----SQKIGTALHFALCGTNPYMSVKTLIDRGANVNS  437 (682)
T ss_pred             HHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcccc----CCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc
Confidence            888888888888888888888888888777666554 333332    233445554332         11          


Q ss_pred             HHHcCCccccccCCCC--cchhhhhhhhcccccccC
Q 011309          277 ARECGLLSSTTSSSDD--ADTCAVCLERACTVAAEG  310 (489)
Q Consensus       277 a~~~G~~~~~~a~~~~--~~~C~iCle~~~~v~~~~  310 (489)
                      ....|+++++.+...+  .+.....++.++++....
T Consensus       438 ~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d  473 (682)
T PHA02876        438 KNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAIN  473 (682)
T ss_pred             CCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCC
Confidence            1223455555544332  355556667776665443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7.9e-29  Score=265.66  Aligned_cols=227  Identities=16%  Similarity=0.143  Sum_probs=180.3

Q ss_pred             chHHHHHHHHc--CCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhC------cHHHHHHHHHcCCCCCCcCCCCCcc
Q 011309           10 SGERLVSAARD--GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG------HNEIVALLLENGADVNSRNYCGQVT   81 (489)
Q Consensus        10 s~t~L~~Aa~~--G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G------~~eivk~LLe~Gad~n~~d~~g~i~   81 (489)
                      ..++||.++..  ++.++|++||++|++++... .+  .||||.|+.++      +.++|++||++|||+|.+|.     
T Consensus        35 g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~--~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~-----  106 (494)
T PHA02989         35 GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YI--ETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTF-----  106 (494)
T ss_pred             CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CC--CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCC-----
Confidence            34677765544  36899999999999998765 44  79999998754      57899999999999999998     


Q ss_pred             cccCCCCChHHHHHHHc---CCHHHHHHHHHccCCC----CCccccccccccccC--Cchhhhhhhhhhhhhhhhcc-cc
Q 011309           82 RADYLSGRTALHFAAVN---GHVRCIRLVVADFVPS----VPFEVMNTQIEGDRG--DGSSVKSKCDQSALSKFVNK-AA  151 (489)
Q Consensus        82 ~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~----~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~in~-~d  151 (489)
                           .|.||||.|+..   |+.+++++|++.|++.    +..+.++++.+....  ....+..+..   .+..++. .+
T Consensus       107 -----~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~---~Gadi~~~~~  178 (494)
T PHA02989        107 -----NGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLS---FGVNLFEKTS  178 (494)
T ss_pred             -----CCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHH---cCCCcccccc
Confidence                 899999988765   6789999999998766    245667777665432  3333443332   2344555 57


Q ss_pred             CCCccHHHHHHHcC----CHHHHHHHHhcCCCcccccccCCCccc----------------------------cCCCCCc
Q 011309          152 DGGITALHMAALNG----YFDCVQLLLDLHANVSAVTFHYGTSMD----------------------------LIGAGST  199 (489)
Q Consensus       152 ~~G~TpLh~Aa~~g----~~e~v~~LL~~Gadvn~~~~~~~~~~~----------------------------~~~~G~T  199 (489)
                      ..|.||||+|+..+    +.+++++|+++|++++..+..+.+++.                            ....|+|
T Consensus       179 ~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~T  258 (494)
T PHA02989        179 LYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFN  258 (494)
T ss_pred             ccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCC
Confidence            78999999998764    899999999999999988753333321                            1245999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          200 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       200 pLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      |||+|+..|+.++|++||++|+|++.+|..|+||||+|+..|+.+++++|++.
T Consensus       259 pL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~  311 (494)
T PHA02989        259 PLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQL  311 (494)
T ss_pred             HHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999998888764

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=9.4e-29  Score=270.64  Aligned_cols=218  Identities=19%  Similarity=0.143  Sum_probs=172.9

Q ss_pred             chHHHHHHHH--cCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCc--HHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309           10 SGERLVSAAR--DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGH--NEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus        10 s~t~L~~Aa~--~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~--~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      ..+|||.|+.  .++.++|++|++.|++++..+..+  .||||+|+..|+  .++|++||++|||+|.+|.         
T Consensus       177 G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G--~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~---------  245 (764)
T PHA02716        177 GYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHL--ITPLHTYLITGNVCASVIKKIIELGGDMDMKCV---------  245 (764)
T ss_pred             CCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCC---------
Confidence            4579999875  468999999999999998877665  999999999996  4999999999999999998         


Q ss_pred             CCCChHHHHHH---HcCCHHHHHHHHHccCCCCCccccc--cc---cccccCCchhhhhhhhhhhhhhhhccccCCCccH
Q 011309           86 LSGRTALHFAA---VNGHVRCIRLVVADFVPSVPFEVMN--TQ---IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA  157 (489)
Q Consensus        86 ~~G~TpLh~Aa---~~g~~~~vk~LL~~~~~~~~~~~~~--l~---~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~Tp  157 (489)
                       .|+||||+|+   ..++.+++++|++.+..... ...+  ++   .+...+....++.+..   .+..++.+|..|.||
T Consensus       246 -~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~-~~~~~~L~~~i~AA~~g~leiVklLLe---~GAdIN~kD~~G~TP  320 (764)
T PHA02716        246 -NGMSPIMTYIINIDNINPEITNIYIESLDGNKV-KNIPMILHSYITLARNIDISVVYSFLQ---PGVKLHYKDSAGRTC  320 (764)
T ss_pred             -CCCCHHHHHHHhhhccCHHHHHHHHHhcccccc-ccchhhhHHHHHHHHcCCHHHHHHHHh---CCCceeccCCCCCCH
Confidence             9999999986   56899999999975432111 1111  11   1222333333333332   344588999999999


Q ss_pred             HHHHHH--cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHH--------------cCCHHHHHHHHHcCC
Q 011309          158 LHMAAL--NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--------------GGNLKCCQVLLSRGA  221 (489)
Q Consensus       158 Lh~Aa~--~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~--------------~g~~eivk~LL~~Ga  221 (489)
                      ||+|+.  .++.++|++|+++|++++.+|..          |+||||+|+.              .++.++|++|+++|+
T Consensus       321 LH~Aaa~~~~~~eIVklLLe~GADIN~kD~~----------G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GA  390 (764)
T PHA02716        321 LHQYILRHNISTDIIKLLHEYGNDLNEPDNI----------GNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGA  390 (764)
T ss_pred             HHHHHHHhCCCchHHHHHHHcCCCCccCCCC----------CCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCC
Confidence            999875  46899999999999999999876          9999999875              378999999999999


Q ss_pred             CCCccCCCCCcHHHH----HHHcCcHhHHHHhcCCC
Q 011309          222 SRMSLNCNGWLPLDV----ARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       222 dvn~~d~~G~TpL~~----A~~~g~~~i~~LL~~~~  253 (489)
                      |++.+|..|+||||.    |...++.+++++|....
T Consensus       391 DIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~  426 (764)
T PHA02716        391 DITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDK  426 (764)
T ss_pred             CCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCc
Confidence            999999999999994    23356788988887654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.96  E-value=1.6e-28  Score=262.99  Aligned_cols=226  Identities=16%  Similarity=0.097  Sum_probs=169.0

Q ss_pred             HHHHHHH--HcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHh-----CcHHHHHHHHHcCCCCCCcCCCCCccccc
Q 011309           12 ERLVSAA--RDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK-----GHNEIVALLLENGADVNSRNYCGQVTRAD   84 (489)
Q Consensus        12 t~L~~Aa--~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~-----G~~eivk~LLe~Gad~n~~d~~g~i~~~d   84 (489)
                      ++++.+.  ..++.++|++|+++|++++..+..+  .||||+|+.+     ++.+++++|+++|+|+|.+|.        
T Consensus        38 ~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g--~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~--------  107 (489)
T PHA02798         38 SIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEY--STPLCTILSNIKDYKHMLDIVKILIENGADINKKNS--------  107 (489)
T ss_pred             hHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCC--CChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCC--------
Confidence            4444333  3457888888888888888766555  7888888764     668888888888888888887        


Q ss_pred             CCCCChHHHHHHHcC---CHHHHHHHHHccCCCC---CccccccccccccCC---chhhhhhhhhhhhhhhhcccc-CCC
Q 011309           85 YLSGRTALHFAAVNG---HVRCIRLVVADFVPSV---PFEVMNTQIEGDRGD---GSSVKSKCDQSALSKFVNKAA-DGG  154 (489)
Q Consensus        85 ~~~G~TpLh~Aa~~g---~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~in~~d-~~G  154 (489)
                        .|+||||+|+..+   +.+++++|++.|++.+   ..+.++++.+...+.   ...+..+.   ..+..++..+ ..|
T Consensus       108 --~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll---~~gadin~~~~~~~  182 (489)
T PHA02798        108 --DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLL---EKGVDINTHNNKEK  182 (489)
T ss_pred             --CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHH---HhCCCcccccCcCC
Confidence              8888888888875   6788888888776543   345666766666554   23333322   2234456554 468


Q ss_pred             ccHHHHHHHc----CCHHHHHHHHhcCCCcccccccCCCccc-----------------------------cCCCCCcHH
Q 011309          155 ITALHMAALN----GYFDCVQLLLDLHANVSAVTFHYGTSMD-----------------------------LIGAGSTPL  201 (489)
Q Consensus       155 ~TpLh~Aa~~----g~~e~v~~LL~~Gadvn~~~~~~~~~~~-----------------------------~~~~G~TpL  201 (489)
                      .||||.++..    ++.+++++|+++|++++..+..+.+++.                             ....|.|||
T Consensus       183 ~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL  262 (489)
T PHA02798        183 YDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPL  262 (489)
T ss_pred             CcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHH
Confidence            8899988764    4788999999999888876544333211                             123599999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          202 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       202 h~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      |+|+..|+.+++++||++|||++.+|..|+||||+|+..++.+++.+|++.
T Consensus       263 ~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~  313 (489)
T PHA02798        263 YYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNK  313 (489)
T ss_pred             HHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999988776654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.9e-28  Score=260.25  Aligned_cols=171  Identities=25%  Similarity=0.289  Sum_probs=147.8

Q ss_pred             HHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHH
Q 011309           25 EAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI  104 (489)
Q Consensus        25 ~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~v  104 (489)
                      ++++|++.|++++..+.. .|.||||+|+..|+.+++++|+++|++++..|.          .|.||||+|+..|+.+++
T Consensus       149 iv~~Ll~~gadin~~~~~-~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~----------~g~tpLh~A~~~~~~~iv  217 (477)
T PHA02878        149 ITKLLLSYGADINMKDRH-KGNTALHYATENKDQRLTELLLSYGANVNIPDK----------TNNSPLHHAVKHYNKPIV  217 (477)
T ss_pred             HHHHHHHcCCCCCccCCC-CCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCC----------CCCCHHHHHHHhCCHHHH
Confidence            555566666776665554 149999999999999999999999999999998          999999999999999999


Q ss_pred             HHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc-CCHHHHHHHHhcCCCcccc
Q 011309          105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN-GYFDCVQLLLDLHANVSAV  183 (489)
Q Consensus       105 k~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~-g~~e~v~~LL~~Gadvn~~  183 (489)
                      ++|++.++.                                 ++.+|..|.||||+|+.. ++.+++++|+++|++++..
T Consensus       218 ~~Ll~~ga~---------------------------------in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~  264 (477)
T PHA02878        218 HILLENGAS---------------------------------TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAK  264 (477)
T ss_pred             HHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCcc
Confidence            999987654                                 788899999999999976 7999999999999999998


Q ss_pred             cccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC-cHhHHHHhc
Q 011309          184 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG-RHWLEPLLA  250 (489)
Q Consensus       184 ~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g-~~~i~~LL~  250 (489)
                      +..         .|.||||+|  .++.+++++|+++|+|++.+|.+|+||||+|+..+ ..++.++|.
T Consensus       265 ~~~---------~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~~~~~~~~~~~~li  321 (477)
T PHA02878        265 SYI---------LGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLSSAVKQYLCINIGRILI  321 (477)
T ss_pred             CCC---------CCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHcCccchHHHHH
Confidence            752         399999999  57899999999999999999999999999999854 334554443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=2.3e-29  Score=251.65  Aligned_cols=188  Identities=31%  Similarity=0.391  Sum_probs=168.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhc-CCCCccc------CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCccc
Q 011309           10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKY------STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTR   82 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~------~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~   82 (489)
                      .++||.+||++|+.++|++|+++ ++++...      ...-.|.+||-.|+..||++||++|+++|+++|....      
T Consensus        42 g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~------  115 (615)
T KOG0508|consen   42 GGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTR------  115 (615)
T ss_pred             CCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccc------
Confidence            45899999999999999999993 4443221      1112358999999999999999999999999998887      


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHH
Q 011309           83 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  162 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  162 (489)
                          ...|||.-|+..||.++||+|++++++                                 ++..|..|.|-||+|+
T Consensus       116 ----TNStPLraACfDG~leivKyLvE~gad---------------------------------~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen  116 ----TNSTPLRAACFDGHLEIVKYLVEHGAD---------------------------------PEIANRHGHTCLMIAC  158 (615)
T ss_pred             ----cCCccHHHHHhcchhHHHHHHHHcCCC---------------------------------CcccccCCCeeEEeee
Confidence                788999999999999999999988765                                 7889999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCc
Q 011309          163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR  242 (489)
Q Consensus       163 ~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~  242 (489)
                      ..||.+++++|++.|+|+|.++..          |+|+||.+++.|++|++++||.+|+.++ +|..|.|||..|+..|+
T Consensus       159 ykGh~~I~qyLle~gADvn~ks~k----------GNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtPL~~Aa~tG~  227 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGADVNAKSYK----------GNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTPLLLAAVTGH  227 (615)
T ss_pred             ccCchHHHHHHHHhCCCcchhccc----------CchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCchHHHHhhhcc
Confidence            999999999999999999999976          9999999999999999999999999884 56779999999999999


Q ss_pred             HhHHHHhcC
Q 011309          243 HWLEPLLAP  251 (489)
Q Consensus       243 ~~i~~LL~~  251 (489)
                      .+++.+|..
T Consensus       228 ~~iVe~L~~  236 (615)
T KOG0508|consen  228 TDIVERLLQ  236 (615)
T ss_pred             hHHHHHHhc
Confidence            999988874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=1.8e-28  Score=258.96  Aligned_cols=247  Identities=25%  Similarity=0.303  Sum_probs=167.6

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHH
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTAL   92 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpL   92 (489)
                      |||.|+..|++..++.|+++|.+++..+..+  .||||+|+..++.|+.+.|++.|+++-..|.          +|.+|+
T Consensus       124 plh~A~~~~~~s~L~~Ll~~~~dvnl~de~~--~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~----------~~~~~i  191 (929)
T KOG0510|consen  124 PLHLAADSGNYSCLKLLLDYGADVNLEDENG--FTPLHLAARKNKVEAKKELINKGADPCKSDI----------DGNFPI  191 (929)
T ss_pred             chhhccccchHHHHHHHHHhcCCccccccCC--CchhhHHHhcChHHHHHHHHhcCCCCCcccC----------cCCchH
Confidence            5666666666666666666665555544433  5666666666666655666666666655555          455555


Q ss_pred             HHHHHcCCHHHHHHHHH-----c---cCCCCCccccccccccccCCchhhhhhhhh------------hhhhhhhccccC
Q 011309           93 HFAAVNGHVRCIRLVVA-----D---FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ------------SALSKFVNKAAD  152 (489)
Q Consensus        93 h~Aa~~g~~~~vk~LL~-----~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~------------~~~~~~in~~d~  152 (489)
                      |.|+..|..++.+.++.     .   ..-.+....++++.+...++...++..+..            ......+|..|+
T Consensus       192 H~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~  271 (929)
T KOG0510|consen  192 HEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDN  271 (929)
T ss_pred             HHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccc
Confidence            55555555555555553     1   112223445566666666666555444332            123345889999


Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCC-CCCccCCCC
Q 011309          153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGA-SRMSLNCNG  230 (489)
Q Consensus       153 ~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Ga-dvn~~d~~G  230 (489)
                      +|.||||+|++.|+.++|+.|+..|++++.++.+          +.||||.||..|++++|+-||+ .|. ..|..|-.|
T Consensus       272 dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d----------~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g  341 (929)
T KOG0510|consen  272 DGCTPLHYAARQGGPESVDNLLGFGASINSKNKD----------EESPLHFAAIYGRINTVERLLQESDTRLLNESDLHG  341 (929)
T ss_pred             cCCchHHHHHHcCChhHHHHHHHcCCcccccCCC----------CCCchHHHHHcccHHHHHHHHhCcCccccccccccC
Confidence            9999999999999999999999999999999876          8999999999999999999998 443 467889999


Q ss_pred             CcHHHHHHHcCcHhHHHHhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHcCCccc
Q 011309          231 WLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSS  285 (489)
Q Consensus       231 ~TpL~~A~~~g~~~i~~LL~~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~~~  285 (489)
                      .||||+|++.||..++++|++.+.........+.++.++|    +.|+.+|..+.
T Consensus       342 ~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaL----H~Aa~~g~~~a  392 (929)
T KOG0510|consen  342 MTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTAL----HLAAKYGNTSA  392 (929)
T ss_pred             CCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhh----hHHHHhccHHH
Confidence            9999999999999999999888776553112255566663    34555555433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=5.4e-28  Score=264.67  Aligned_cols=234  Identities=18%  Similarity=0.031  Sum_probs=171.5

Q ss_pred             HHcCCHHHHHHHhhcC-CCCccc-CCCCCCchHHHHHHHh--CcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHH
Q 011309           18 ARDGDFVEAKMLLDCN-PCLAKY-STFGGLNSPLHFAAAK--GHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALH   93 (489)
Q Consensus        18 a~~G~~~~Vk~LL~~g-~~l~~~-~~~~~g~TpLh~Aa~~--G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh   93 (489)
                      .+.+++++|++|++.| ++++.. +..+  .||||+|+..  ++.++|++|+++|+++|.+|.          .|.||||
T Consensus       150 ~~~v~leiVk~LLe~G~ADIN~~~d~~G--~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~----------~G~TPLH  217 (764)
T PHA02716        150 TRGIDLDLIKYMVDVGIVNLNYVCKKTG--YGILHAYLGNMYVDIDILEWLCNNGVNVNLQNN----------HLITPLH  217 (764)
T ss_pred             ccCCCHHHHHHHHHCCCCCcccccCCCC--CcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCC----------CCCCHHH
Confidence            3569999999999999 998876 4433  9999998754  678999999999999999998          9999999


Q ss_pred             HHHHcCC--HHHHHHHHHccCCCCC---ccccccccccc---cCCchhhhhhhhhhhhhhhhccccCCCccHHH---HHH
Q 011309           94 FAAVNGH--VRCIRLVVADFVPSVP---FEVMNTQIEGD---RGDGSSVKSKCDQSALSKFVNKAADGGITALH---MAA  162 (489)
Q Consensus        94 ~Aa~~g~--~~~vk~LL~~~~~~~~---~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh---~Aa  162 (489)
                      +|+..|+  .++|++|++.|++.+.   .+.++++.+..   ......+..+.....    .+.. ....++|+   .|+
T Consensus       218 ~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d----~n~~-~~~~~~L~~~i~AA  292 (764)
T PHA02716        218 TYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLD----GNKV-KNIPMILHSYITLA  292 (764)
T ss_pred             HHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhcc----cccc-ccchhhhHHHHHHH
Confidence            9999995  5999999998876432   34455543321   111111111111000    0000 01112233   377


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH-
Q 011309          163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM-  239 (489)
Q Consensus       163 ~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~--~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~-  239 (489)
                      ..|+.++|++|+++|++++.+|..          |+||||+|+.  .++.++|++|+++|++++.+|..|+||||+|+. 
T Consensus       293 ~~g~leiVklLLe~GAdIN~kD~~----------G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~  362 (764)
T PHA02716        293 RNIDISVVYSFLQPGVKLHYKDSA----------GRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSM  362 (764)
T ss_pred             HcCCHHHHHHHHhCCCceeccCCC----------CCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHh
Confidence            889999999999999999999876          9999999874  468999999999999999999999999999875 


Q ss_pred             -------------cCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHHHHHHHHHcCC
Q 011309          240 -------------WGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVLNVARECGL  282 (489)
Q Consensus       240 -------------~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~  282 (489)
                                   .++.+++++|.. +++++..    +..+.+|++..+..+...+.
T Consensus       363 lav~~~ld~~~~~~~~~eVVklLL~~GADIn~k----n~~G~TPLh~y~~~a~n~~~  415 (764)
T PHA02716        363 LSVVNILDPETDNDIRLDVIQCLISLGADITAV----NCLGYTPLTSYICTAQNYMY  415 (764)
T ss_pred             hhhhccccccccccChHHHHHHHHHCCCCCCCc----CCCCCChHHHHHHHHHhcCh
Confidence                         267788877655 4444443    56778888755555544443

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.96  E-value=3.2e-28  Score=257.03  Aligned_cols=231  Identities=25%  Similarity=0.253  Sum_probs=193.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      +..+|||+|+.....+.|++|++.|++....+...  ++|||+|+..|+.+++++|+++|+|+|..|.          .|
T Consensus        87 ~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~--~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de----------~~  154 (929)
T KOG0510|consen   87 ADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNK--NAPLHLAADSGNYSCLKLLLDYGADVNLEDE----------NG  154 (929)
T ss_pred             ccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhc--cCchhhccccchHHHHHHHHHhcCCcccccc----------CC
Confidence            33578999999999999999999999998887776  8999999999999999999999999999998          99


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhh--hhhhhccccCCCccHHHHHHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSA--LSKFVNKAADGGITALHMAAL  163 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~in~~d~~G~TpLh~Aa~  163 (489)
                      .||||+|+.+++.+..+.|++.+++.   +..+..+++.+...+.....+.......  ....+|.-+..|.||||.|+.
T Consensus       155 ~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve  234 (929)
T KOG0510|consen  155 FTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVE  234 (929)
T ss_pred             CchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhh
Confidence            99999999999999889999876643   3445556677777777777766655332  334588889999999999999


Q ss_pred             cCCHHHHHHHHhcCCCccccc-----ccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          164 NGYFDCVQLLLDLHANVSAVT-----FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       164 ~g~~e~v~~LL~~Gadvn~~~-----~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                      .|+.++++.+|+.|+......     ..+.-..+.+..|.||||+|++.|+.+.|+.|+..|++++.+++++.||||.|+
T Consensus       235 ~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA  314 (929)
T KOG0510|consen  235 GGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAA  314 (929)
T ss_pred             cCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHH
Confidence            999999999999986543322     110011123355999999999999999999999999999999999999999999


Q ss_pred             HcCcHhHHHHhcC
Q 011309          239 MWGRHWLEPLLAP  251 (489)
Q Consensus       239 ~~g~~~i~~LL~~  251 (489)
                      .+|+.+.++-|++
T Consensus       315 ~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  315 IYGRINTVERLLQ  327 (929)
T ss_pred             HcccHHHHHHHHh
Confidence            9999987665555

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.7e-27  Score=255.32  Aligned_cols=222  Identities=19%  Similarity=0.102  Sum_probs=170.4

Q ss_pred             cCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHh--CcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHH
Q 011309           20 DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK--GHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAV   97 (489)
Q Consensus        20 ~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~--G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~   97 (489)
                      ..+.++|++||++|++++.. ..  |.||||+++..  ++.++|++||++|||+|.++           .+.||||.|+.
T Consensus        13 ~~~~~~v~~LL~~GadvN~~-~~--g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-----------~~~tpL~~a~~   78 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEE-YR--GNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-----------YIETPLCAVLR   78 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccc-cC--CCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-----------CCCCcHHHHHh
Confidence            58899999999999999886 33  37999876654  37899999999999999886           47999999975


Q ss_pred             ------cCCHHHHHHHHHccCCCCC---ccccccccccccC---Cchhhhhhhhhhhhhhhh-ccccCCCccHHHHHHHc
Q 011309           98 ------NGHVRCIRLVVADFVPSVP---FEVMNTQIEGDRG---DGSSVKSKCDQSALSKFV-NKAADGGITALHMAALN  164 (489)
Q Consensus        98 ------~g~~~~vk~LL~~~~~~~~---~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~i-n~~d~~G~TpLh~Aa~~  164 (489)
                            .++.+++++|++.|++.+.   .+.++++.+....   ....++.+.   ..+..+ +.+|..|.||||+|+..
T Consensus        79 ~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll---~~Gadin~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         79 NREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLL---SKGINVNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             ccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHH---HCCCCcccccCCCCCCHHHHHHHh
Confidence                  5889999999998876443   4556666443332   223333332   334557 78899999999999764


Q ss_pred             --CCHHHHHHHHhcCCCcccc-cccCCCccccCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCc------------
Q 011309          165 --GYFDCVQLLLDLHANVSAV-TFHYGTSMDLIGAGSTPLHFAACGG----NLKCCQVLLSRGASRMS------------  225 (489)
Q Consensus       165 --g~~e~v~~LL~~Gadvn~~-~~~~~~~~~~~~~G~TpLh~Aa~~g----~~eivk~LL~~Gadvn~------------  225 (489)
                        ++.++|++|+++|++++.. +..          |.||||+|+..+    +.++|++|+++|++++.            
T Consensus       156 ~~~~~~iv~~Ll~~Gadi~~~~~~~----------g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~  225 (494)
T PHA02989        156 FSVKKDVIKILLSFGVNLFEKTSLY----------GLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESF  225 (494)
T ss_pred             ccCCHHHHHHHHHcCCCcccccccc----------CCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence              6899999999999999984 444          889999987754    88999999988887654            


Q ss_pred             --------------------------cCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHH
Q 011309          226 --------------------------LNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       226 --------------------------~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~  272 (489)
                                                +|..|+||||+|+..|+.+++++|++ +++++..    +..+.+|++.
T Consensus       226 ~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~----d~~G~TpL~~  295 (494)
T PHA02989        226 LDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNV----SKDGDTVLTY  295 (494)
T ss_pred             HHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCcccc----CCCCCCHHHH
Confidence                                      45669999999999999998876655 5555554    4566777554

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.6e-27  Score=253.65  Aligned_cols=226  Identities=13%  Similarity=0.061  Sum_probs=173.0

Q ss_pred             CHHHHHHHhhcCCCCcccCCCCCCchHHHHHHH--hCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHc-
Q 011309           22 DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAA--KGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN-   98 (489)
Q Consensus        22 ~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~--~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~-   98 (489)
                      +++.|+.||+.+. ++.. .+  +.|+++.+..  .++.++|++|+++|+++|..|.          .|.||||+|+.+ 
T Consensus        17 ~~~~v~~ll~~~~-~~~~-~~--~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~----------~g~TpL~~~~~n~   82 (489)
T PHA02798         17 KLSTVKLLIKSCN-PNEI-VN--EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDN----------EYSTPLCTILSNI   82 (489)
T ss_pred             cHHHHHHHHhcCC-hhhh-cc--cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCC----------CCCChHHHHHHhH
Confidence            4779999998653 3333 22  3677775554  4589999999999999999998          999999999864 


Q ss_pred             ----CCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC---HH
Q 011309           99 ----GHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---FD  168 (489)
Q Consensus        99 ----g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~---~e  168 (489)
                          ++.+++++|++.|++.+   ..+.++++.+...+..............+..++..|..|.||||+|+..++   .+
T Consensus        83 ~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~  162 (489)
T PHA02798         83 KDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIE  162 (489)
T ss_pred             HhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHH
Confidence                78999999999887644   456778887766553322222222334456789999999999999999998   99


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHc----CCHHHHHHHHHcCCC----------------------
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG----GNLKCCQVLLSRGAS----------------------  222 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~----g~~eivk~LL~~Gad----------------------  222 (489)
                      ++++|+++|++++..+..         .|.||||.++..    ++.+++++|+++|++                      
T Consensus       163 vv~~Ll~~gadin~~~~~---------~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~  233 (489)
T PHA02798        163 IIKLLLEKGVDINTHNNK---------EKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYD  233 (489)
T ss_pred             HHHHHHHhCCCcccccCc---------CCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhh
Confidence            999999999999987643         288999988764    478888888887764                      


Q ss_pred             -----------------CCccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHHHH
Q 011309          223 -----------------RMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVL  274 (489)
Q Consensus       223 -----------------vn~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~l  274 (489)
                                       +|.+|..|+||||+|+.+|+.+++++|++ +++++..    +..+.+|++.++
T Consensus       234 ~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~----d~~G~TpL~~A~  299 (489)
T PHA02798        234 NKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINII----TELGNTCLFTAF  299 (489)
T ss_pred             cccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCccccc----CCCCCcHHHHHH
Confidence                             45567789999999999999998877755 6666655    456778866443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.2e-27  Score=244.87  Aligned_cols=187  Identities=16%  Similarity=0.074  Sum_probs=161.9

Q ss_pred             HHHHcCCHHHHHHHhhcCCCCc------ccCCCCCCchHHHHHHH--hCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309           16 SAARDGDFVEAKMLLDCNPCLA------KYSTFGGLNSPLHFAAA--KGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus        16 ~Aa~~G~~~~Vk~LL~~g~~l~------~~~~~~~g~TpLh~Aa~--~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      .|+..+..+++++|+.+|++++      .+...  ++|+||.|+.  .|+.++|++|+++|||++..            +
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~--~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~------------~  148 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNS--VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI------------E  148 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhcccc--ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC------------C
Confidence            7999999999999999999987      54444  3999999999  99999999999999999984            4


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      +.||||+|+..|+.+++++|++.|+......                           ..+..+..|.|++|.|+..++.
T Consensus       149 ~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~---------------------------~~~l~~~~~~t~l~~a~~~~~~  201 (437)
T PHA02795        149 CLNAYFRGICKKESSVVEFILNCGIPDENDV---------------------------KLDLYKIIQYTRGFLVDEPTVL  201 (437)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHhcCCcccccc---------------------------cchhhhhhccchhHHHHhcCHH
Confidence            6899999999999999999999875321100                           0111223577999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCc-----
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-----  242 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~-----  242 (489)
                      +++++|+++|+++|.++..          |.||||+|+..|+.++|++|+++||+++.+|..|+||||+|+..|+     
T Consensus       202 eIve~LIs~GADIN~kD~~----------G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        202 EIYKLCIPYIEDINQLDAG----------GRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             HHHHHHHhCcCCcCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence            9999999999999999976          9999999999999999999999999999999999999999999984     


Q ss_pred             ---HhHHHHhcCCC
Q 011309          243 ---HWLEPLLAPSS  253 (489)
Q Consensus       243 ---~~i~~LL~~~~  253 (489)
                         .+++++|+..+
T Consensus       272 ~~~~eIvelLL~~g  285 (437)
T PHA02795        272 ETHLKILEILLREP  285 (437)
T ss_pred             ccHHHHHHHHHhCC
Confidence               57887776543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.8e-27  Score=246.94  Aligned_cols=208  Identities=19%  Similarity=0.162  Sum_probs=178.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCc-CCCCCcccccCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR-NYCGQVTRADYLS   87 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~-d~~g~i~~~d~~~   87 (489)
                      ...||||.|+..|+.++|++|++.|++++.....+  .||||+|+..|+.++|++|++.|++++.. +.          .
T Consensus        34 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~--~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~----------~  101 (413)
T PHA02875         34 DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDI--ESELHDAVEEGDVKAVEELLDLGKFADDVFYK----------D  101 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCc--ccHHHHHHHCCCHHHHHHHHHcCCcccccccC----------C
Confidence            45689999999999999999999999877654444  89999999999999999999999877543 43          7


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  164 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  164 (489)
                      |.||||+|+..|+.+++++|++.+++..   ..+.++++.+...+....+..+...   +..++.+|..|.||||+|+..
T Consensus       102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~---g~~~~~~d~~g~TpL~~A~~~  178 (413)
T PHA02875        102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH---KACLDIEDCCGCTPLIIAMAK  178 (413)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHc
Confidence            9999999999999999999999877543   3567788888888877766665543   345788999999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc---CCCCCcHHHHHHHc
Q 011309          165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL---NCNGWLPLDVARMW  240 (489)
Q Consensus       165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~---d~~G~TpL~~A~~~  240 (489)
                      |+.+++++|+++|++++..+..         .+.||||+|+..|+.++|++|+++|+|++..   +.++.|||+++...
T Consensus       179 g~~eiv~~Ll~~ga~~n~~~~~---------~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~~t~l~~~~~~  248 (413)
T PHA02875        179 GDIAICKMLLDSGANIDYFGKN---------GCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEECTILDMICNM  248 (413)
T ss_pred             CCHHHHHHHHhCCCCCCcCCCC---------CCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCchHHHHHHHhh
Confidence            9999999999999999998866         2468999999999999999999999999875   67899999988754

>PHA02917 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.2e-26  Score=254.57  Aligned_cols=220  Identities=17%  Similarity=0.104  Sum_probs=145.3

Q ss_pred             HHHHHHHhhcCCCCcccCCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcC
Q 011309           23 FVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNG   99 (489)
Q Consensus        23 ~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g   99 (489)
                      ++.|+.||..+..++..+.++  +||||+|+..   |+.++|++||++|++++..+.          .|+||||+|+..|
T Consensus        12 ~~~~~~l~~~~~~~~~~d~~g--~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~----------~g~TpL~~Aa~~g   79 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQFK--NNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNW----------RQLTPLEEYTNSR   79 (661)
T ss_pred             HHHHHHHHhccCcccccCCCC--CcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCC----------CCCCHHHHHHHcC
Confidence            455666666555554434333  6777765444   556777777777777766665          6667777777666


Q ss_pred             CHH----HHHHHHHccCCCCCccc-cccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHH--HcCCHHHHHH
Q 011309          100 HVR----CIRLVVADFVPSVPFEV-MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA--LNGYFDCVQL  172 (489)
Q Consensus       100 ~~~----~vk~LL~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa--~~g~~e~v~~  172 (489)
                      +.+    ++++|++.+...+.... ...+.+...+....++.+.   ..+..+|.+|..|.||||.|+  ..|+.++|++
T Consensus        80 ~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll---~~Gadin~~d~~g~T~L~~~~a~~~~~~eivkl  156 (661)
T PHA02917         80 HVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLV---EHGFDLSVKCENHRSVIENYVMTDDPVPEIIDL  156 (661)
T ss_pred             ChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHH---HcCCCCCccCCCCccHHHHHHHccCCCHHHHHH
Confidence            643    34555543221111111 1112222233333333332   224458999999999999654  5789999999


Q ss_pred             HHhcCCCccccccc--CCCcc-c-cCCCCCcHHHHHHH-----------cCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 011309          173 LLDLHANVSAVTFH--YGTSM-D-LIGAGSTPLHFAAC-----------GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  237 (489)
Q Consensus       173 LL~~Gadvn~~~~~--~~~~~-~-~~~~G~TpLh~Aa~-----------~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A  237 (489)
                      |+++|++++..+..  +|... + ....+.||||+|+.           .++.++|++|+++|||++.+|.+|+||||+|
T Consensus       157 Li~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A  236 (661)
T PHA02917        157 FIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYY  236 (661)
T ss_pred             HHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHH
Confidence            99999999876532  11100 0 00135699999986           4689999999999999999999999999999


Q ss_pred             HHcCcH--hHHHHhcCCCCCCC
Q 011309          238 RMWGRH--WLEPLLAPSSDAVM  257 (489)
Q Consensus       238 ~~~g~~--~i~~LL~~~~~~~~  257 (489)
                      +..|+.  +++++|.++++.+.
T Consensus       237 ~~~g~~~~eivk~Li~g~d~~~  258 (661)
T PHA02917        237 IKSSHIDIDIVKLLMKGIDNTA  258 (661)
T ss_pred             HHcCCCcHHHHHHHHhCCcccc
Confidence            999986  69999988876643

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=4e-27  Score=235.60  Aligned_cols=208  Identities=26%  Similarity=0.306  Sum_probs=175.7

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCc---ccCCCCCCchHHHHHHHhCcHHHHHHHHH-cCCCCCCcCCCCCccccc--CCC
Q 011309           14 LVSAARDGDFVEAKMLLDCNPCLA---KYSTFGGLNSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRAD--YLS   87 (489)
Q Consensus        14 L~~Aa~~G~~~~Vk~LL~~g~~l~---~~~~~~~g~TpLh~Aa~~G~~eivk~LLe-~Gad~n~~d~~g~i~~~d--~~~   87 (489)
                      .+.|++.|.+..++.|+-...+..   ......+|.|||-+||++||.++|++|++ -++++.....    ..+|  ...
T Consensus         8 ~~naa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~Gs----V~FDge~Ie   83 (615)
T KOG0508|consen    8 VINAARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGS----VRFDGETIE   83 (615)
T ss_pred             HHHHhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCce----EEeCCcccC
Confidence            458999999999988887644221   11222234799999999999999999999 4788765432    1121  237


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |.+||..|+..||.++||.|++.++.                                 +|.......|||-.|+..||.
T Consensus        84 gappLWaAsaAGHl~vVk~L~~~ga~---------------------------------VN~tT~TNStPLraACfDG~l  130 (615)
T KOG0508|consen   84 GAPPLWAASAAGHLEVVKLLLRRGAS---------------------------------VNDTTRTNSTPLRAACFDGHL  130 (615)
T ss_pred             CCchhhHHhccCcHHHHHHHHHhcCc---------------------------------cccccccCCccHHHHHhcchh
Confidence            89999999999999999999987643                                 777777788999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  247 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~  247 (489)
                      ++|+||+++|+|++..+.+          |.|.||+|+.+|+.+|+++|++.|||+|.++..|+|+||.++..|+.++++
T Consensus       131 eivKyLvE~gad~~Ianrh----------GhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq  200 (615)
T KOG0508|consen  131 EIVKYLVEHGADPEIANRH----------GHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQ  200 (615)
T ss_pred             HHHHHHHHcCCCCcccccC----------CCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHH
Confidence            9999999999999999987          999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCCCCCCcchhhHH
Q 011309          248 LLAPSSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       248 LL~~~~~~~~~~~~~~~~~~~pl~~  272 (489)
                      +|++.+.....    ++++-+||+.
T Consensus       201 ~Ll~~ga~i~~----d~~GmtPL~~  221 (615)
T KOG0508|consen  201 LLLKHGAKIDV----DGHGMTPLLL  221 (615)
T ss_pred             HHHhCCceeee----cCCCCchHHH
Confidence            99988776544    6678888654

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=8.5e-26  Score=255.59  Aligned_cols=177  Identities=23%  Similarity=0.295  Sum_probs=154.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..++|+.||..|+.++++.|++.|++++..+..+  +||||+|+.+|+.++|++|+++|+++|.+|.          +|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G--~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~----------~G~  592 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKG--RTPLHIAASKGYEDCVLVLLKHACNVHIRDA----------NGN  592 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcChHHHHHHHHhcCCCCCCcCC----------CCC
Confidence            3578999999999999999999999988776655  8999999999999999999999999999998          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..||.+++++|++.+..                                 .  ....|.++||+|+..|+.++
T Consensus       593 TpL~~A~~~g~~~iv~~L~~~~~~---------------------------------~--~~~~~~~~L~~Aa~~g~~~~  637 (823)
T PLN03192        593 TALWNAISAKHHKIFRILYHFASI---------------------------------S--DPHAAGDLLCTAAKRNDLTA  637 (823)
T ss_pred             CHHHHHHHhCCHHHHHHHHhcCcc---------------------------------c--CcccCchHHHHHHHhCCHHH
Confidence            999999999999999999864321                                 1  12346689999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC-CcHHHHHHHcCcH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG-WLPLDVARMWGRH  243 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G-~TpL~~A~~~g~~  243 (489)
                      +++|+++|+++|..|..          |.||||+|+..|+.+++++|+++|||++..|..| +||++++......
T Consensus       638 v~~Ll~~Gadin~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~~~  702 (823)
T PLN03192        638 MKELLKQGLNVDSEDHQ----------GATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQKR  702 (823)
T ss_pred             HHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHHHh
Confidence            99999999999998876          9999999999999999999999999999999888 8999888654433

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.93  E-value=4.6e-25  Score=210.28  Aligned_cols=170  Identities=16%  Similarity=0.142  Sum_probs=143.0

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcC--CHHHHHHHHHccCCCCCcccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFVPSVPFEVMNT  122 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g--~~~~vk~LL~~~~~~~~~~~~~l  122 (489)
                      +.||||+|+..|+.++|+.|++.   ++..|.          .|.||||+|+..+  +.+++++|++.+.+         
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~----------~g~TpLh~a~~~~~~~~eiv~~Ll~~gad---------   78 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF---VNDCND----------LYETPIFSCLEKDKVNVEILKFLIENGAD---------   78 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh---hhccCc----------cCCCHHHHHHHcCCCCHHHHHHHHHCCCC---------
Confidence            48999999999999999999986   455666          8999999999865  89999999987654         


Q ss_pred             ccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCccccCCCCC
Q 011309          123 QIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS  198 (489)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~---g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~  198 (489)
                                              +|.++ ..|.||||+|+..   ++.+++++|+++|++++.++..          |.
T Consensus        79 ------------------------vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~----------G~  124 (209)
T PHA02859         79 ------------------------VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDED----------GK  124 (209)
T ss_pred             ------------------------CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCC----------CC
Confidence                                    77776 4899999998864   4799999999999999999876          99


Q ss_pred             cHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCCcHHHH-HHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHHHH
Q 011309          199 TPLHFAAC--GGNLKCCQVLLSRGASRMSLNCNGWLPLDV-ARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVL  274 (489)
Q Consensus       199 TpLh~Aa~--~g~~eivk~LL~~Gadvn~~d~~G~TpL~~-A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~l  274 (489)
                      ||||+|+.  .++.+++++|+++|++++.+|.+|.||||. |+..++.+++++|.. +++++..    +..+.+|+..+.
T Consensus       125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~----d~~g~tpl~la~  200 (209)
T PHA02859        125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINET----NKSGYNCYDLIK  200 (209)
T ss_pred             CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCC----CCCCCCHHHHHh
Confidence            99999986  468999999999999999999999999996 566788898887765 5555543    456677765433

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=1e-26  Score=259.24  Aligned_cols=231  Identities=29%  Similarity=0.334  Sum_probs=166.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC----------
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ----------   79 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~----------   79 (489)
                      ..+++|.|++.|.+++|+.++.+|.+.+.....+  .||||.|+..++..+|++++++|++++..+..|+          
T Consensus       374 ~~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~g--vTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g  451 (1143)
T KOG4177|consen  374 GFTPLHLAVKSGRVSVVELLLEAGADPNSAGKNG--VTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKG  451 (1143)
T ss_pred             CCcchhhhcccCchhHHHhhhhccCCcccCCCCC--cceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhcc
Confidence            3568888999999999998888888877666555  7888888888888888888888888777776222          


Q ss_pred             --------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccC---CCCCccccccccccccCCchhhhhhhhhhh
Q 011309           80 --------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFV---PSVPFEVMNTQIEGDRGDGSSVKSKCDQSA  142 (489)
Q Consensus        80 --------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  142 (489)
                                    ........|.||||+|+..||.++++.|++...   .......+.++++...+........   ..
T Consensus       452 ~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l---~~  528 (1143)
T KOG4177|consen  452 RYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKIL---LE  528 (1143)
T ss_pred             cHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHH---hh
Confidence                          001112245555555555555555555554331   1112222233332222222222211   12


Q ss_pred             hhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          143 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       143 ~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                      -+..++.++..|.||||.|+.+|+.++|++||++|++++.+++.          |+||||.|+..|+.+|+++|+++||+
T Consensus       529 ~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~----------G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  529 HGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKL----------GYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             cCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCC----------CCChhhHHHHcChHHHHHHHHHcCCC
Confidence            23457888889999999999999999999999999999999965          99999999999999999999999999


Q ss_pred             CCccCCCCCcHHHHHHHcCcHhHHHHhcCCCCC
Q 011309          223 RMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  255 (489)
Q Consensus       223 vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~  255 (489)
                      +|..|.+|.|||++|+..|+.+++++|......
T Consensus       599 vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  599 VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             CCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            999999999999999999999998888665544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.93  E-value=3.2e-26  Score=255.28  Aligned_cols=253  Identities=30%  Similarity=0.320  Sum_probs=170.0

Q ss_pred             CCchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC--------
Q 011309            8 SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ--------   79 (489)
Q Consensus         8 s~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~--------   79 (489)
                      .+..+|||.|+..|+.+++.+|...++........+  .||+|+|+..|..+++++|+++|+++|..+..|-        
T Consensus       339 ~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~--~~pl~la~~~g~~~~v~Lll~~ga~~~~~gk~gvTplh~aa~  416 (1143)
T KOG4177|consen  339 TAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKG--FTPLHLAVKSGRVSVVELLLEAGADPNSAGKNGVTPLHVAAH  416 (1143)
T ss_pred             cCCcccccHhhhhhhHHHHHHhhccccccCcccccC--CcchhhhcccCchhHHHhhhhccCCcccCCCCCcceeeehhh
Confidence            345689999999999998888888887766555544  9999999999999999999999999999988332        


Q ss_pred             ---------------cccccCCCCChHHHHHHHcC-CHHHHHHHHHccCC---CCCccccccccccccCCchhhhhhhhh
Q 011309           80 ---------------VTRADYLSGRTALHFAAVNG-HVRCIRLVVADFVP---SVPFEVMNTQIEGDRGDGSSVKSKCDQ  140 (489)
Q Consensus        80 ---------------i~~~d~~~G~TpLh~Aa~~g-~~~~vk~LL~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~  140 (489)
                                     ........|.||+|+|+..| ..++...+++.+.+   ....+.++++++...+.......+.+.
T Consensus       417 ~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~  496 (1143)
T KOG4177|consen  417 YGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEG  496 (1143)
T ss_pred             ccCcceEEEEeccCCChhhHhhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhc
Confidence                           00111223444444444444 44444444433222   122334444444444444443333222


Q ss_pred             hhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309          141 SALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       141 ~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  220 (489)
                      +   ..++...+.|.|+||+|+..++..+++.|+++|++++.++..          |.||||+|+..|++++||+||++|
T Consensus       497 ~---~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r----------~~TpLh~A~~~g~v~~VkfLLe~g  563 (1143)
T KOG4177|consen  497 G---ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGR----------GYTPLHVAVHYGNVDLVKFLLEHG  563 (1143)
T ss_pred             C---CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhccc----------ccchHHHHHhcCCchHHHHhhhCC
Confidence            2   223344445555555555555555555555555555555544          999999999999999999999999


Q ss_pred             CCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHHHHHHHHcCCc
Q 011309          221 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLNVARECGLL  283 (489)
Q Consensus       221 advn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~  283 (489)
                      ||++.+++.|+||||.|+..|+.+++.||.++ +.++..    +..+.+|+    .++..+|..
T Consensus       564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~----d~~g~TpL----~iA~~lg~~  619 (1143)
T KOG4177|consen  564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAA----DLDGFTPL----HIAVRLGYL  619 (1143)
T ss_pred             ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcc----cccCcchh----HHHHHhccc
Confidence            99999999999999999999999998888665 555554    34455663    344445543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.92  E-value=5.7e-24  Score=233.59  Aligned_cols=189  Identities=12%  Similarity=0.025  Sum_probs=141.3

Q ss_pred             HHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHc---CCHHHHHHHHHccCCCC---CccccccccccccCCc
Q 011309           58 NEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDG  131 (489)
Q Consensus        58 ~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~  131 (489)
                      ++.|+.|+..|+.++.+|.          +|+||||+|+..   |+.++|++|++.+++..   ..+.++++.+...+..
T Consensus        12 ~~~~~~l~~~~~~~~~~d~----------~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~   81 (661)
T PHA02917         12 LDELKQMLRDRDPNDTRNQ----------FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHV   81 (661)
T ss_pred             HHHHHHHHhccCcccccCC----------CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCh
Confidence            5788999999999998888          999999997555   88999999999887654   3456788877777654


Q ss_pred             hhhhhhhhhh-hhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH--HcC
Q 011309          132 SSVKSKCDQS-ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA--CGG  208 (489)
Q Consensus       132 ~~~~~~~~~~-~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa--~~g  208 (489)
                      .......... ......|..+  ..+++|+|+.+|+.++|++|+++|++++..+..          |.||||+|+  ..|
T Consensus        82 ~v~~~~~~~Ll~~~~~~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~----------g~T~L~~~~a~~~~  149 (661)
T PHA02917         82 KVNKDIAMALLEATGYSNIND--FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCEN----------HRSVIENYVMTDDP  149 (661)
T ss_pred             hHHHHHHHHHHhccCCCCCCC--cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCC----------CccHHHHHHHccCC
Confidence            3322111100 0001133333  237788899999999999999999999999977          999999654  578


Q ss_pred             CHHHHHHHHHcCCCCCccCC---CC-----------CcHHHHHHH-----------cCcHhHHHHhc-CCCCCCCCCCCC
Q 011309          209 NLKCCQVLLSRGASRMSLNC---NG-----------WLPLDVARM-----------WGRHWLEPLLA-PSSDAVMPRFHP  262 (489)
Q Consensus       209 ~~eivk~LL~~Gadvn~~d~---~G-----------~TpL~~A~~-----------~g~~~i~~LL~-~~~~~~~~~~~~  262 (489)
                      +.++|++|+++||+++..|.   .|           +||||+|+.           .++.+++++|. .+++++..    
T Consensus       150 ~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~----  225 (661)
T PHA02917        150 VPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSI----  225 (661)
T ss_pred             CHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccC----
Confidence            99999999999999987654   34           599999986           45778888776 46666554    


Q ss_pred             CCCcchhhHH
Q 011309          263 SNYLSLPLLS  272 (489)
Q Consensus       263 ~~~~~~pl~~  272 (489)
                      +..+.+|++.
T Consensus       226 d~~G~TpLh~  235 (661)
T PHA02917        226 DKNYCTALQY  235 (661)
T ss_pred             CCCCCcHHHH
Confidence            4556677553

>PHA02730 ankyrin-like protein; Provisional

Probab=99.92  E-value=8.2e-24  Score=228.01  Aligned_cols=238  Identities=10%  Similarity=0.056  Sum_probs=166.4

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCccc-------CCCCCCchHHHHHH------HhCcHHHHHHHHHcCCCCCCcCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKY-------STFGGLNSPLHFAA------AKGHNEIVALLLENGADVNSRNY   76 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~-------~~~~~g~TpLh~Aa------~~G~~eivk~LLe~Gad~n~~d~   76 (489)
                      +-+|++.|...+++++|++|++.|++++-+       +... ..|.||+++      ..++.|++++||++||++|.+|.
T Consensus       155 ~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~~-c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~  233 (672)
T PHA02730        155 GLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSDR-CKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDE  233 (672)
T ss_pred             chhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCCc-cchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCC
Confidence            457999999999999999999999998522       2222 246666443      55789999999999999999998


Q ss_pred             CCCcccccCCCCChHHHH--HHHcCCHHHHHHHHH--------------------------------ccCCCCC-----c
Q 011309           77 CGQVTRADYLSGRTALHF--AAVNGHVRCIRLVVA--------------------------------DFVPSVP-----F  117 (489)
Q Consensus        77 ~g~i~~~d~~~G~TpLh~--Aa~~g~~~~vk~LL~--------------------------------~~~~~~~-----~  117 (489)
                                .|.||||+  |...|+.++|++|++                                .+.+...     .
T Consensus       234 ----------~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  303 (672)
T PHA02730        234 ----------GGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIE  303 (672)
T ss_pred             ----------CCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhh
Confidence                      99999995  555678999999998                                1111100     0


Q ss_pred             cccc---ccc----ccccCCc----------------h----hhhhhhh------------hhhhhhhhccccCCCccHH
Q 011309          118 EVMN---TQI----EGDRGDG----------------S----SVKSKCD------------QSALSKFVNKAADGGITAL  158 (489)
Q Consensus       118 ~~~~---l~~----~~~~~~~----------------~----~~~~~~~------------~~~~~~~in~~d~~G~TpL  158 (489)
                      +...   ...    .-..+..                .    .+..+..            ...-+..+|.. ..|.|||
T Consensus       304 ~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpL  382 (672)
T PHA02730        304 GRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPL  382 (672)
T ss_pred             ccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHH
Confidence            0000   000    0001100                0    0000000            01123346764 7899999


Q ss_pred             HHHHHcCC----HHHHHHHHhcCC--CcccccccCCCccccCCCCCcHHHH---HHHcC---------CHHHHHHHHHcC
Q 011309          159 HMAALNGY----FDCVQLLLDLHA--NVSAVTFHYGTSMDLIGAGSTPLHF---AACGG---------NLKCCQVLLSRG  220 (489)
Q Consensus       159 h~Aa~~g~----~e~v~~LL~~Ga--dvn~~~~~~~~~~~~~~~G~TpLh~---Aa~~g---------~~eivk~LL~~G  220 (489)
                      |+|+..+.    .+++++|+++|+  +++..+..          |.||||.   |...+         ..+++++|+.+|
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~----------G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~G  452 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNN----------GRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYM  452 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHHcCCCccccccccC----------CCchHhHHHHHHhccccccccchhHHHHHHHHHhcc
Confidence            99998875    899999999998  68888766          9999994   33332         236799999999


Q ss_pred             CCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHH
Q 011309          221 ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       221 advn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~  272 (489)
                      ||+|++|..|+||||+|+..++.+++++|... ++++..+.   ..+.+|++.
T Consensus       453 ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~---~~g~TaL~~  502 (672)
T PHA02730        453 DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSR---SIINTAIQK  502 (672)
T ss_pred             cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCC---cCCcCHHHH
Confidence            99999999999999999999999988777664 55554432   235677653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=1.5e-23  Score=237.46  Aligned_cols=159  Identities=24%  Similarity=0.233  Sum_probs=145.0

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      +.++||.||..|+.++++.|+++|+|+|..|.          .|+||||+|+.+|+.+++++|++.+.+           
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~----------~G~TpLh~Aa~~g~~~~v~~Ll~~gad-----------  583 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDS----------KGRTPLHIAASKGYEDCVLVLLKHACN-----------  583 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCCHHHHHHHcChHHHHHHHHhcCCC-----------
Confidence            37999999999999999999999999999998          999999999999999999999987644           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                            +|.+|.+|.||||+|+..|+.+++++|++.++..+..+            |.++||+|
T Consensus       584 ----------------------in~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~------------~~~~L~~A  629 (823)
T PLN03192        584 ----------------------VHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA------------AGDLLCTA  629 (823)
T ss_pred             ----------------------CCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCccc------------CchHHHHH
Confidence                                  78889999999999999999999999999887765433            77999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCC
Q 011309          205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMP  258 (489)
Q Consensus       205 a~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~  258 (489)
                      +..|+.+++++|+++|+|+|.+|.+|+||||+|+..|+.+++++|.. +++++..
T Consensus       630 a~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        630 AKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA  684 (823)
T ss_pred             HHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCC
Confidence            99999999999999999999999999999999999999999888765 4555444

>PHA02792 ankyrin-like protein; Provisional

Probab=99.91  E-value=1e-23  Score=225.05  Aligned_cols=250  Identities=14%  Similarity=0.022  Sum_probs=183.4

Q ss_pred             HHHH-HHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHH-hCcHHHHHHHHHcCCCCCCcCCCCC----------
Q 011309           12 ERLV-SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAA-KGHNEIVALLLENGADVNSRNYCGQ----------   79 (489)
Q Consensus        12 t~L~-~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~-~G~~eivk~LLe~Gad~n~~d~~g~----------   79 (489)
                      ++|| .|...|++++|++|+++|++++.....  +.||||+|+. .|+.|+|++||++|||++..+..|-          
T Consensus        73 ~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~--~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792         73 DIFEYLCSDNIDIELLKLLISKGLEINSIKNG--INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             cHHHHHHHhcccHHHHHHHHHcCCCcccccCC--CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccc
Confidence            3554 456789999999999999999977654  4899999976 6999999999999999766544333          


Q ss_pred             ----------------cccccCCCCChHHHHHHHcC-------CHHHHHHHHHccCCC---CCccccccccccccC--Cc
Q 011309           80 ----------------VTRADYLSGRTALHFAAVNG-------HVRCIRLVVADFVPS---VPFEVMNTQIEGDRG--DG  131 (489)
Q Consensus        80 ----------------i~~~d~~~G~TpLh~Aa~~g-------~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~--~~  131 (489)
                                      ..-.++..|.||||+|+.++       +.++++.|+++++..   +..+.++++.+....  ..
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~  230 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKR  230 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchH
Confidence                            22356678999999999999       899999999987644   344556666555444  11


Q ss_pred             hhhhhhhhhh----------------hh-----------------------------------------hh---------
Q 011309          132 SSVKSKCDQS----------------AL-----------------------------------------SK---------  145 (489)
Q Consensus       132 ~~~~~~~~~~----------------~~-----------------------------------------~~---------  145 (489)
                      ..++.+....                .+                                         .+         
T Consensus       231 ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l  310 (631)
T PHA02792        231 EIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLL  310 (631)
T ss_pred             HHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHH
Confidence            1111110000                00                                         00         


Q ss_pred             ----------------h----hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          146 ----------------F----VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       146 ----------------~----in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                                      .    .+.........++.|+..|+.++|++|+++||+++..+..        +.+.||||+|.
T Consensus       311 ~~Yl~~~~v~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~--------g~~~TpLh~A~  382 (631)
T PHA02792        311 SEYVSYHTVYINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDN--------IINIMPLFPTL  382 (631)
T ss_pred             HHHHhcCCccHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCC--------CCChhHHHHHH
Confidence                            0    1111112456789999999999999999999999998865        22579999988


Q ss_pred             HcCCH---HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHHHH
Q 011309          206 CGGNL---KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLN  275 (489)
Q Consensus       206 ~~g~~---eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~l~  275 (489)
                      .....   +++++|+++|||+|.+|..|+||||+|+..++.+++++|... ++++..    +..+.+|+..+..
T Consensus       383 ~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~k----D~~G~TpL~~A~~  452 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINIT----TKYGSTCIGICVI  452 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHHHHH
Confidence            77664   468999999999999999999999999999999998877665 444443    5566777766544

>PHA02730 ankyrin-like protein; Provisional

Probab=99.91  E-value=6.9e-24  Score=228.58  Aligned_cols=195  Identities=17%  Similarity=0.141  Sum_probs=138.9

Q ss_pred             hHHHHHHHHcC---CHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhC--cHHHHHHHHHcCC--CCCCcCCCCCcccc
Q 011309           11 GERLVSAARDG---DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG--HNEIVALLLENGA--DVNSRNYCGQVTRA   83 (489)
Q Consensus        11 ~t~L~~Aa~~G---~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G--~~eivk~LLe~Ga--d~n~~d~~g~i~~~   83 (489)
                      .||||+|+..|   +.++|++||++|++++..+..|  +||||+|+..|  +.|+|++|+++|+  +++..+.       
T Consensus        42 ~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G--~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~-------  112 (672)
T PHA02730         42 NNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEG--LTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSN-------  112 (672)
T ss_pred             CcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCC--CChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccc-------
Confidence            46777777776   4777777777777777665544  77777777755  6777777777754  3465554       


Q ss_pred             cCCCCChHHHHHHH--cCCHHHHHHHHHcc-CCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHH
Q 011309           84 DYLSGRTALHFAAV--NGHVRCIRLVVADF-VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALH  159 (489)
Q Consensus        84 d~~~G~TpLh~Aa~--~g~~~~vk~LL~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh  159 (489)
                         .+.+|||.++.  +++.++|++|+..+ .+.                             ....+..+ ..|.+|++
T Consensus       113 ---~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~-----------------------------~~~~~~~~~~~~~~~~y  160 (672)
T PHA02730        113 ---INDFDLYSYMSSDNIDLRLLKYLIVDKRIRP-----------------------------SKNTNYYIHCLGLVDIY  160 (672)
T ss_pred             ---cCCchHHHHHHhcCCcHHHHHHHHHhcCCCh-----------------------------hhhhhhhccccchhhhh
Confidence               56777777777  77777777777422 110                             01122223 37899999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCcccccc---cCCCccccCCCCCcHHHHH------HHcCCHHHHHHHHHcCCCCCccCCCC
Q 011309          160 MAALNGYFDCVQLLLDLHANVSAVTF---HYGTSMDLIGAGSTPLHFA------ACGGNLKCCQVLLSRGASRMSLNCNG  230 (489)
Q Consensus       160 ~Aa~~g~~e~v~~LL~~Gadvn~~~~---~~~~~~~~~~~G~TpLh~A------a~~g~~eivk~LL~~Gadvn~~d~~G  230 (489)
                      +|+..++.++|++|+++|++++....   .+.++     ...|.||++      ...++.|++++|+++|||+|.+|.+|
T Consensus       161 l~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~-----~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G  235 (672)
T PHA02730        161 VTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD-----RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGG  235 (672)
T ss_pred             HhcCCCchHHHHHHHHcCCcccccccccccccCC-----ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999999999999999963210   01111     134566644      35578999999999999999999999


Q ss_pred             CcHHHH--HHHcCcHhHHHHhcC
Q 011309          231 WLPLDV--ARMWGRHWLEPLLAP  251 (489)
Q Consensus       231 ~TpL~~--A~~~g~~~i~~LL~~  251 (489)
                      +||||+  |...|+.+++++|..
T Consensus       236 ~TpLh~~~~~~~~~~eiv~~Li~  258 (672)
T PHA02730        236 SLPIQYYWSCSTIDIEIVKLLIK  258 (672)
T ss_pred             CCHHHHHHHcCcccHHHHHHHHh
Confidence            999996  545677999999988

>PHA02795 ankyrin-like protein; Provisional

Probab=99.91  E-value=6.7e-24  Score=219.10  Aligned_cols=168  Identities=21%  Similarity=0.190  Sum_probs=145.5

Q ss_pred             chHHHHHHHH--cCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309           10 SGERLVSAAR--DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus        10 s~t~L~~Aa~--~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      ..|+||.|+.  .|++++|++||++|++++..  ++  .||||.|+..|+.++|++|+++|++.+....   .. .....
T Consensus       116 ~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~--~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~---~~-l~~~~  187 (437)
T PHA02795        116 VQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--EC--LNAYFRGICKKESSVVEFILNCGIPDENDVK---LD-LYKII  187 (437)
T ss_pred             ccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CC--CCHHHHHHHcCcHHHHHHHHhcCCccccccc---ch-hhhhh
Confidence            4689999999  99999999999999999763  22  7999999999999999999999985432221   00 00124


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |.|++|.|+..++.+++++|++.+++                                 +|.+|..|.||||+|+..|+.
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GAD---------------------------------IN~kD~~G~TpLh~Aa~~g~~  234 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIED---------------------------------INQLDAGGRTLLYRAIYAGYI  234 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCC---------------------------------cCcCCCCCCCHHHHHHHcCCH
Confidence            78999999999999999999988755                                 899999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCC--------HHHHHHHHHcCCCCCccCC
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN--------LKCCQVLLSRGASRMSLNC  228 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~--------~eivk~LL~~Gadvn~~d~  228 (489)
                      ++|++|+++|++++.++..          |.||||+|+..|+        .+++++|+++|++++..+.
T Consensus       235 eiVelLL~~GAdIN~~d~~----------G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        235 DLVSWLLENGANVNAVMSN----------GYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             HHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            9999999999999999976          9999999999984        6999999999999987543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=1.7e-24  Score=198.20  Aligned_cols=190  Identities=26%  Similarity=0.211  Sum_probs=153.3

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHH
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTAL   92 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpL   92 (489)
                      -+-.|.+.|+.++++.++.-.++-....... |+++++.|+-.|+...+..+|.+|+..|..+.          -+++|+
T Consensus        65 ~~~~~~~s~nsd~~v~s~~~~~~~~~~t~p~-g~~~~~v~ap~~s~~k~sttltN~~rgnevs~----------~p~s~~  133 (296)
T KOG0502|consen   65 LLTVAVRSGNSDVAVQSAQLDPDAIDETDPE-GWSALLVAAPCGSVDKVSTTLTNGARGNEVSL----------MPWSPL  133 (296)
T ss_pred             ccchhhhcCCcHHHHHhhccCCCCCCCCCch-hhhhhhhcCCCCCcceeeeeecccccCCcccc----------ccCChh
Confidence            3667788888888888887766654444333 58899999888888888888888888888887          888888


Q ss_pred             HHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHH
Q 011309           93 HFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL  172 (489)
Q Consensus        93 h~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~  172 (489)
                      .+++...|.+++..|.++                                   .+|..|..|.|||+||+.+|++.+|++
T Consensus       134 slsVhql~L~~~~~~~~n-----------------------------------~VN~~De~GfTpLiWAaa~G~i~vV~f  178 (296)
T KOG0502|consen  134 SLSVHQLHLDVVDLLVNN-----------------------------------KVNACDEFGFTPLIWAAAKGHIPVVQF  178 (296)
T ss_pred             hHHHHHHHHHHHHHHhhc-----------------------------------cccCccccCchHhHHHHhcCchHHHHH
Confidence            888888888888777743                                   278888888888888888888888888


Q ss_pred             HHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh-cC
Q 011309          173 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL-AP  251 (489)
Q Consensus       173 LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL-~~  251 (489)
                      ||+.|||++...+.          ..|+|.+|..+|.++||++||.++.|+|..|-+|-|||-||++-+|.++++.| ..
T Consensus       179 LL~~GAdp~~lgk~----------resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~s  248 (296)
T KOG0502|consen  179 LLNSGADPDALGKY----------RESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNS  248 (296)
T ss_pred             HHHcCCChhhhhhh----------hhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhc
Confidence            88888888888765          77888888888888888888888888888888888888888888888876544 55


Q ss_pred             CCCCCCC
Q 011309          252 SSDAVMP  258 (489)
Q Consensus       252 ~~~~~~~  258 (489)
                      +++++..
T Consensus       249 GAd~t~e  255 (296)
T KOG0502|consen  249 GADVTQE  255 (296)
T ss_pred             CCCcccc
Confidence            5665554

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=1.3e-23  Score=214.45  Aligned_cols=205  Identities=29%  Similarity=0.378  Sum_probs=165.8

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHH
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTAL   92 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpL   92 (489)
                      .|..|+..|+.+.|..||..|++++....++  .|+||-++...+.+||++|+++|++||..|.          .|||||
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~Dg--lTalhq~~id~~~e~v~~l~e~ga~Vn~~d~----------e~wtPl  110 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDG--LTALHQACIDDNLEMVKFLVENGANVNAQDN----------EGWTPL  110 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCCcc--chhHHHHHhcccHHHHHHHHHhcCCcccccc----------ccCCcc
Confidence            5888999999999999999999887777666  9999999999999999999999999999998          999999


Q ss_pred             HHHHHcCCHHHHHHHHHccCCCCCcc---ccccccccccCCchhh-----------hhhh------------hhhhhhhh
Q 011309           93 HFAAVNGHVRCIRLVVADFVPSVPFE---VMNTQIEGDRGDGSSV-----------KSKC------------DQSALSKF  146 (489)
Q Consensus        93 h~Aa~~g~~~~vk~LL~~~~~~~~~~---~~~l~~~~~~~~~~~~-----------~~~~------------~~~~~~~~  146 (489)
                      |.|+.-||..++++|++.++.....+   ..+..+.........+           ..-.            .....+..
T Consensus       111 haaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~  190 (527)
T KOG0505|consen  111 HAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAE  190 (527)
T ss_pred             hhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccc
Confidence            99999999999999998766433221   1111111111100000           0000            00011223


Q ss_pred             hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 011309          147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  226 (489)
Q Consensus       147 in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~  226 (489)
                      .+.++..|.|+||.|+.+|..++.++|+++|.+++.+|..          |+||||.|+.+|..+++++|+++|++.+..
T Consensus       191 ~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~d----------gWtPlHAAA~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  191 LDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYD----------GWTPLHAAAHWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             ccccccccchHHHHHHhhhHHHHHHHHHHhccCccccccc----------CCCcccHHHHhhhHhHHHHHHHhhcccchh
Confidence            5666667999999999999999999999999999999987          999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHH
Q 011309          227 NCNGWLPLDVARM  239 (489)
Q Consensus       227 d~~G~TpL~~A~~  239 (489)
                      ...|.||+.+|..
T Consensus       261 t~~g~~p~dv~de  273 (527)
T KOG0505|consen  261 TKMGETPLDVADE  273 (527)
T ss_pred             hhcCCCCccchhh
Confidence            9999999999975

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.90  E-value=4.8e-23  Score=231.37  Aligned_cols=197  Identities=24%  Similarity=0.247  Sum_probs=145.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhc--CCCCcccCCCCCCchHHH-HHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDC--NPCLAKYSTFGGLNSPLH-FAAAKGHNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~--g~~l~~~~~~~~g~TpLh-~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      ..+++|+.||+.|+++.|+.+++.  +.+++..+..  |+|||| .|+.+++.+++++|+++|+    .+.         
T Consensus        16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~--G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~---------   80 (743)
T TIGR00870        16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRL--GRSALFVAAIENENLELTELLLNLSC----RGA---------   80 (743)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCcc--chhHHHHHHHhcChHHHHHHHHhCCC----CCC---------
Confidence            446799999999999999999999  6666554444  499999 8889999999999999987    444         


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  165 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g  165 (489)
                       .|.||||+|+.. +.+.++.++..........          ...         ..........+..|.||||+|+.+|
T Consensus        81 -~G~T~Lh~A~~~-~~~~v~~ll~~l~~~~~~~----------~~~---------~~~~~~~~~~~~~G~TpLhlAa~~~  139 (743)
T TIGR00870        81 -VGDTLLHAISLE-YVDAVEAILLHLLAAFRKS----------GPL---------ELANDQYTSEFTPGITALHLAAHRQ  139 (743)
T ss_pred             -cChHHHHHHHhc-cHHHHHHHHHHHhhccccc----------Cch---------hhhccccccccCCCCcHHHHHHHhC
Confidence             799999999873 3333333332111000000          000         0000001223457999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccccCCC----ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309          166 YFDCVQLLLDLHANVSAVTFHYGT----SMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  241 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn~~~~~~~~----~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g  241 (489)
                      +.++|++|+++|++++..+.....    ..+....|.||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..+
T Consensus       140 ~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~  219 (743)
T TIGR00870       140 NYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMEN  219 (743)
T ss_pred             CHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhh
Confidence            999999999999999975421100    0011235899999999999999999999999999999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=205.36  Aligned_cols=158  Identities=28%  Similarity=0.321  Sum_probs=139.1

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHcC-CCCCCcCCCCCcccccCCCCChHHHHHHHcC-----CHHHHHHHHHccCCCC
Q 011309           42 FGGLNSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQVTRADYLSGRTALHFAAVNG-----HVRCIRLVVADFVPSV  115 (489)
Q Consensus        42 ~~~g~TpLh~Aa~~G~~eivk~LLe~G-ad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g-----~~~~vk~LL~~~~~~~  115 (489)
                      +.+|+|+||||+.+++++||+.||+.| .++|..|+          .|.||+++|+...     +.++|..|..-+    
T Consensus       265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNr----------AGYtpiMLaALA~lk~~~d~~vV~~LF~mg----  330 (452)
T KOG0514|consen  265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNR----------AGYTPVMLAALAKLKQPADRTVVERLFKMG----  330 (452)
T ss_pred             cCCCCeeeeeeecccchHHHHHHhccCccccccccc----------ccccHHHHHHHHhhcchhhHHHHHHHHhcc----
Confidence            445599999999999999999999998 79999998          9999999998643     456677666432    


Q ss_pred             CccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccC
Q 011309          116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI  194 (489)
Q Consensus       116 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~  194 (489)
                                                    .||.+. ..|+|+||+|+.+|+.++|+.||..|||||.+|.+        
T Consensus       331 ------------------------------nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdD--------  372 (452)
T KOG0514|consen  331 ------------------------------DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDD--------  372 (452)
T ss_pred             ------------------------------CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCC--------
Confidence                                          155554 58999999999999999999999999999999987        


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          195 GAGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       195 ~~G~TpLh~Aa~~g~~eivk~LL~~-Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                        |.|+||.|+++|+.|||++||.. +.|+...|.+|-|+|.+|...|+.+|..+|..+-
T Consensus       373 --GSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~  430 (452)
T KOG0514|consen  373 --GSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHM  430 (452)
T ss_pred             --ccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHH
Confidence              99999999999999999999975 8899999999999999999999999988885543

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.89  E-value=1.5e-23  Score=191.93  Aligned_cols=189  Identities=26%  Similarity=0.379  Sum_probs=170.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ..++.|+-.|+.+.+..+|..+...+..+..+  ++|+++++..-|++++..|.++  .+|..|.          .|.||
T Consensus        98 ~~~~v~ap~~s~~k~sttltN~~rgnevs~~p--~s~~slsVhql~L~~~~~~~~n--~VN~~De----------~GfTp  163 (296)
T KOG0502|consen   98 SALLVAAPCGSVDKVSTTLTNGARGNEVSLMP--WSPLSLSVHQLHLDVVDLLVNN--KVNACDE----------FGFTP  163 (296)
T ss_pred             hhhhhcCCCCCcceeeeeecccccCCcccccc--CChhhHHHHHHHHHHHHHHhhc--cccCccc----------cCchH
Confidence            45999999999999999999999999888877  9999999999999998888775  5677777          99999


Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHH
Q 011309           92 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ  171 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~  171 (489)
                      |.||+.+||+.+|++||+.|++                                 ++...++..|+|++|...|..++|+
T Consensus       164 LiWAaa~G~i~vV~fLL~~GAd---------------------------------p~~lgk~resALsLAt~ggytdiV~  210 (296)
T KOG0502|consen  164 LIWAAAKGHIPVVQFLLNSGAD---------------------------------PDALGKYRESALSLATRGGYTDIVE  210 (296)
T ss_pred             hHHHHhcCchHHHHHHHHcCCC---------------------------------hhhhhhhhhhhHhHHhcCChHHHHH
Confidence            9999999999999999988765                                 4555567889999999999999999


Q ss_pred             HHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcC
Q 011309          172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  251 (489)
Q Consensus       172 ~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~  251 (489)
                      +||+.+.|||..|.+          |-|||.||++.|+.+||+.||+.|||++..+..|++++.+|+..|+..+.+.|.+
T Consensus       211 lLL~r~vdVNvyDwN----------GgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr~Vqqvie~  280 (296)
T KOG0502|consen  211 LLLTREVDVNVYDWN----------GGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYRIVQQVIEK  280 (296)
T ss_pred             HHHhcCCCcceeccC----------CCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhHHHHHHHHH
Confidence            999999999999988          8999999999999999999999999999999999999999999999976666666


Q ss_pred             CCCCCC
Q 011309          252 SSDAVM  257 (489)
Q Consensus       252 ~~~~~~  257 (489)
                      +.....
T Consensus       281 h~lkl~  286 (296)
T KOG0502|consen  281 HALKLC  286 (296)
T ss_pred             HHHHHh
Confidence            555433

>PHA02792 ankyrin-like protein; Provisional

Probab=99.88  E-value=3.7e-22  Score=213.27  Aligned_cols=207  Identities=12%  Similarity=0.029  Sum_probs=154.4

Q ss_pred             chHHHHHHHH-cCCHHHHHHHhhcCCCCccc----------------------------------CCCCCCchHHHHHHH
Q 011309           10 SGERLVSAAR-DGDFVEAKMLLDCNPCLAKY----------------------------------STFGGLNSPLHFAAA   54 (489)
Q Consensus        10 s~t~L~~Aa~-~G~~~~Vk~LL~~g~~l~~~----------------------------------~~~~~g~TpLh~Aa~   54 (489)
                      ..++||+|+. .|++++|++||+.|++....                                  -++..|.||||+|+.
T Consensus       105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~  184 (631)
T PHA02792        105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII  184 (631)
T ss_pred             CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence            3468899966 69999999999999873210                                  111236899999999


Q ss_pred             hC-------cHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcC--CHHHHHHHHHccC-------------
Q 011309           55 KG-------HNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNG--HVRCIRLVVADFV-------------  112 (489)
Q Consensus        55 ~G-------~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g--~~~~vk~LL~~~~-------------  112 (489)
                      .+       +.|+++.||++|++++..|.          .|.||||+|+.+.  ..+++++|+....             
T Consensus       185 ~~s~~~~~~~~~v~k~Li~~g~~~~~~d~----------~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~  254 (631)
T PHA02792        185 TRSQDGYATSLDVINYLISHEKEMRYYTY----------REHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYL  254 (631)
T ss_pred             hCCcccccCCHHHHHHHHhCCCCcCccCC----------CCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHH
Confidence            99       89999999999999999998          8999999999999  7889999884311             


Q ss_pred             -----CCC-Ccc----------cc--c----------------------------cc--------------cccc-----
Q 011309          113 -----PSV-PFE----------VM--N----------------------------TQ--------------IEGD-----  127 (489)
Q Consensus       113 -----~~~-~~~----------~~--~----------------------------l~--------------~~~~-----  127 (489)
                           ..+ ...          ..  .                            ++              ....     
T Consensus       255 ~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~  334 (631)
T PHA02792        255 RKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL  334 (631)
T ss_pred             HHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc
Confidence                 000 000          00  0                            00              0000     


Q ss_pred             --------------cCCchhhhhhhhhhhhhhhhccccCCC--ccHHHHHHHcCCH---HHHHHHHhcCCCcccccccCC
Q 011309          128 --------------RGDGSSVKSKCDQSALSKFVNKAADGG--ITALHMAALNGYF---DCVQLLLDLHANVSAVTFHYG  188 (489)
Q Consensus       128 --------------~~~~~~~~~~~~~~~~~~~in~~d~~G--~TpLh~Aa~~g~~---e~v~~LL~~Gadvn~~~~~~~  188 (489)
                                    .+....++.+   ...+..++.+|..|  .||||+|+.....   +++++|+++|+++|.+|..  
T Consensus       335 ~r~~~~n~~~~Aa~~gn~eIVelL---Is~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~--  409 (631)
T PHA02792        335 YRFKHINKYFQKFDNRDPKVVEYI---LKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKH--  409 (631)
T ss_pred             ccCCcchHHHHHHHcCCHHHHHHH---HHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCcccccccc--
Confidence                          0000000000   01123366777664  6999998877654   4689999999999999977  


Q ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHH
Q 011309          189 TSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM  239 (489)
Q Consensus       189 ~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~  239 (489)
                              |.||||+|+..++.+++++|+++|++++.+|..|+|||++|+.
T Consensus       410 --------G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        410 --------GRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVI  452 (631)
T ss_pred             --------CcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                    9999999999999999999999999999999999999999986

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=7.7e-22  Score=181.31  Aligned_cols=133  Identities=21%  Similarity=0.264  Sum_probs=112.5

Q ss_pred             chHHHHHHHhCcH----HHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHH---HHHHHHccCCCCCcc
Q 011309           46 NSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC---IRLVVADFVPSVPFE  118 (489)
Q Consensus        46 ~TpLh~Aa~~G~~----eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~---vk~LL~~~~~~~~~~  118 (489)
                      .++||.|++.|+.    +++++|++.|++++.+|.          .|+||||+|+.+|+.+.   +++|++.+..     
T Consensus        21 ~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~----------~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad-----   85 (166)
T PHA02743         21 QNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDH----------HGRQCTHMVAWYDRANAVMKIELLVNMGAD-----   85 (166)
T ss_pred             CcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCC----------CCCcHHHHHHHhCccCHHHHHHHHHHcCCC-----
Confidence            6889999999987    666678888998888887          89999999999888654   7888876543     


Q ss_pred             ccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCccccCCC
Q 011309          119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGA  196 (489)
Q Consensus       119 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~v~~LL~-~Gadvn~~~~~~~~~~~~~~~  196 (489)
                                                  +|.+| ..|.||||+|+..|+.+++++|++ .|++++..+..          
T Consensus        86 ----------------------------in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~----------  127 (166)
T PHA02743         86 ----------------------------INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQ----------  127 (166)
T ss_pred             ----------------------------CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCC----------
Confidence                                        67777 479999999999999999999995 79999888866          


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309          197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  231 (489)
Q Consensus       197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~  231 (489)
                      |.||||+|+..++.+++++|+++|++++.++..|.
T Consensus       128 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        128 HETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            89999999999999999999999999988887764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=2e-22  Score=211.95  Aligned_cols=208  Identities=28%  Similarity=0.280  Sum_probs=174.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .|.||.|+.+|+.+++++|+++.+-++..+..+  .+|||+|+..|+.++|++||.++..+|..+.          .|.|
T Consensus        50 fTalhha~Lng~~~is~llle~ea~ldl~d~kg--~~plhlaaw~g~~e~vkmll~q~d~~na~~~----------e~~t  117 (854)
T KOG0507|consen   50 FTLLHHAVLNGQNQISKLLLDYEALLDLCDTKG--ILPLHLAAWNGNLEIVKMLLLQTDILNAVNI----------ENET  117 (854)
T ss_pred             hhHHHHHHhcCchHHHHHHhcchhhhhhhhccC--cceEEehhhcCcchHHHHHHhcccCCCcccc----------cCcC
Confidence            477999999999999999999998888877554  8999999999999999999999988898887          8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhh-----hccccCCCccHHHHHH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF-----VNKAADGGITALHMAA  162 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----in~~d~~G~TpLh~Aa  162 (489)
                      |||.|+++||.+++.+|+.++.+.   +....+.+.++...+....+..++........     -..++-.+.+|||+|+
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa  197 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA  197 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh
Confidence            999999999999999999876543   44556667777777776666555444211111     2344557889999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309          163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  241 (489)
Q Consensus       163 ~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g  241 (489)
                      ++||.++++.|+++|.++|..+..           -|+||.|+..|..++|++||+.|.+..++|.+|+|+|.+-...-
T Consensus       198 kngh~~~~~~ll~ag~din~~t~~-----------gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~  265 (854)
T KOG0507|consen  198 KNGHVECMQALLEAGFDINYTTED-----------GTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQ  265 (854)
T ss_pred             hcchHHHHHHHHhcCCCccccccc-----------chhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcc
Confidence            999999999999999999998864           48999999999999999999999999999999999999887653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.86  E-value=2.3e-21  Score=217.79  Aligned_cols=203  Identities=21%  Similarity=0.157  Sum_probs=147.8

Q ss_pred             chHHHH-HHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhC---cHHHHHHHHHcCCCCC----CcCCCCCcc
Q 011309           10 SGERLV-SAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKG---HNEIVALLLENGADVN----SRNYCGQVT   81 (489)
Q Consensus        10 s~t~L~-~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G---~~eivk~LLe~Gad~n----~~d~~g~i~   81 (489)
                      +.|||| .|+..++.++++.|++.|.    .+  ..|.||||+|+..+   ..+++++|++.+.+-+    ..+    ..
T Consensus        52 G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~--~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~----~~  121 (743)
T TIGR00870        52 GRSALFVAAIENENLELTELLLNLSC----RG--AVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELAND----QY  121 (743)
T ss_pred             chhHHHHHHHhcChHHHHHHHHhCCC----CC--CcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcc----cc
Confidence            457999 9999999999999999886    22  23489999999732   2234444444442211    000    01


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHH
Q 011309           82 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA  161 (489)
Q Consensus        82 ~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~A  161 (489)
                      ..++..|.||||+|+.+|+.++|++|++.+++.+.....          ....         ..........|.||||.|
T Consensus       122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~----------~~~~---------~~~~~~~~~~g~tpL~~A  182 (743)
T TIGR00870       122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACG----------DFFV---------KSQGVDSFYHGESPLNAA  182 (743)
T ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCC----------chhh---------cCCCCCcccccccHHHHH
Confidence            122347999999999999999999999987764411000          0000         000001224689999999


Q ss_pred             HHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcC---------CHHHHHHHHHcCCCC-------Cc
Q 011309          162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG---------NLKCCQVLLSRGASR-------MS  225 (489)
Q Consensus       162 a~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g---------~~eivk~LL~~Gadv-------n~  225 (489)
                      +..|+.+++++|+++|+|++..|..          |+||||+|+..+         ...+.+++++.++..       +.
T Consensus       183 a~~~~~~iv~lLl~~gadin~~d~~----------g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i  252 (743)
T TIGR00870       183 ACLGSPSIVALLSEDPADILTADSL----------GNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVI  252 (743)
T ss_pred             HHhCCHHHHHHHhcCCcchhhHhhh----------hhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhh
Confidence            9999999999999999999999977          999999999987         234667777665554       67


Q ss_pred             cCCCCCcHHHHHHHcCcHhHHHHhcC
Q 011309          226 LNCNGWLPLDVARMWGRHWLEPLLAP  251 (489)
Q Consensus       226 ~d~~G~TpL~~A~~~g~~~i~~LL~~  251 (489)
                      .|.+|.||||+|+..|+.+++++|.+
T Consensus       253 ~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       253 LNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             cCCCCCCchhhhhhcCCccHHHHHHH
Confidence            79999999999999999999988877

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.85  E-value=1.7e-21  Score=205.07  Aligned_cols=211  Identities=26%  Similarity=0.316  Sum_probs=163.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcC-----C--------CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCN-----P--------CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY   76 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g-----~--------~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~   76 (489)
                      ..+-|..|++.||++.|..||+..     +        ..+..+.  .|.|+||.|+.+|+.+++++|+++.+-++..|.
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~--~gfTalhha~Lng~~~is~llle~ea~ldl~d~   80 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDY--SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDT   80 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCc--cchhHHHHHHhcCchHHHHHHhcchhhhhhhhc
Confidence            346799999999999999999842     1        1222233  459999999999999999999999999988887


Q ss_pred             CCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCcc
Q 011309           77 CGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT  156 (489)
Q Consensus        77 ~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T  156 (489)
                                .|.+|||+|+-.|+.+++++|+.+..                                 .+|.....|.|
T Consensus        81 ----------kg~~plhlaaw~g~~e~vkmll~q~d---------------------------------~~na~~~e~~t  117 (854)
T KOG0507|consen   81 ----------KGILPLHLAAWNGNLEIVKMLLLQTD---------------------------------ILNAVNIENET  117 (854)
T ss_pred             ----------cCcceEEehhhcCcchHHHHHHhccc---------------------------------CCCcccccCcC
Confidence                      99999999999999999999996531                                 25666667777


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccC-------------------------------CCCCcHHHHHH
Q 011309          157 ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI-------------------------------GAGSTPLHFAA  205 (489)
Q Consensus       157 pLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~-------------------------------~~G~TpLh~Aa  205 (489)
                      |||.||++||.++|.+|+.+|+|.-..+..+++.+++.                               -.+.+|||+|+
T Consensus       118 plhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaa  197 (854)
T KOG0507|consen  118 PLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAA  197 (854)
T ss_pred             ccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhh
Confidence            77777777777777777777777777666665555432                               23678999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhh
Q 011309          206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPL  270 (489)
Q Consensus       206 ~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl  270 (489)
                      ++|+.++++.|+++|.|+|.....| |+||.|+.-|..+++.+|++ +....+.    +.++++.+
T Consensus       198 kngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~----n~~~qtal  258 (854)
T KOG0507|consen  198 KNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIK----NQHGQTAL  258 (854)
T ss_pred             hcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccc----cccchHHH
Confidence            9999999999999999998887665 79999999999988776655 4443333    34444444

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=8.9e-21  Score=174.69  Aligned_cols=131  Identities=21%  Similarity=0.217  Sum_probs=114.8

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.+++++|+.....                           ...+..++.+|..|.||||+|+..|+
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~---------------------------~~~ga~in~~d~~g~T~Lh~A~~~g~   72 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRG---------------------------DCHAAALNATDDAGQMCIHIAAEKHE   72 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhcc---------------------------chhhhhhhccCCCCCcHHHHHHHcCC
Confidence            899999999999999999998742100                           01123478899999999999999999


Q ss_pred             ----HHHHHHHHhcCCCcccccc-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHc
Q 011309          167 ----FDCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMW  240 (489)
Q Consensus       167 ----~e~v~~LL~~Gadvn~~~~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~  240 (489)
                          .+++++|+++|++++.++. .          |+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|+..
T Consensus        73 ~~~~~~ii~~Ll~~gadin~~~~~~----------g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~  142 (169)
T PHA02741         73 AQLAAEIIDHLIELGADINAQEMLE----------GDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDN  142 (169)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCcCC----------CCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHC
Confidence                5899999999999999874 4          9999999999999999999998 5999999999999999999999


Q ss_pred             CcHhHHHHhcCCCC
Q 011309          241 GRHWLEPLLAPSSD  254 (489)
Q Consensus       241 g~~~i~~LL~~~~~  254 (489)
                      ++.+++++|.+...
T Consensus       143 ~~~~iv~~L~~~~~  156 (169)
T PHA02741        143 EDVAMMQILREIVA  156 (169)
T ss_pred             CCHHHHHHHHHHHH
Confidence            99999999977543

>PHA02741 hypothetical protein; Provisional

Probab=99.84  E-value=2.1e-20  Score=172.27  Aligned_cols=126  Identities=22%  Similarity=0.214  Sum_probs=112.2

Q ss_pred             CchHHHHHHHhCcHHHHHHHHH------cCCCCCCcCCCCCcccccCCCCChHHHHHHHcCC----HHHHHHHHHccCCC
Q 011309           45 LNSPLHFAAAKGHNEIVALLLE------NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH----VRCIRLVVADFVPS  114 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe------~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~----~~~vk~LL~~~~~~  114 (489)
                      |.||||+|++.|+.++|++|+.      .|++++.+|.          .|+||||+|+..|+    .+++++|++.+.. 
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~----------~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad-   89 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDD----------AGQMCIHIAAEKHEAQLAAEIIDHLIELGAD-   89 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCC----------CCCcHHHHHHHcCChHHHHHHHHHHHHcCCC-
Confidence            4899999999999999999864      3688999998          89999999999999    5788888876543 


Q ss_pred             CCccccccccccccCCchhhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCccc
Q 011309          115 VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSMD  192 (489)
Q Consensus       115 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~e~v~~LL~-~Gadvn~~~~~~~~~~~  192 (489)
                                                      +|.++. .|.||||+|+..++.+++++|++ .|++++..+..      
T Consensus        90 --------------------------------in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~------  131 (169)
T PHA02741         90 --------------------------------INAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNAD------  131 (169)
T ss_pred             --------------------------------CCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC------
Confidence                                            777775 89999999999999999999997 59999998876      


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309          193 LIGAGSTPLHFAACGGNLKCCQVLLSRGASR  223 (489)
Q Consensus       193 ~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv  223 (489)
                          |.||||+|+..++.+++++|++.++..
T Consensus       132 ----g~tpL~~A~~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741        132 ----NKSPFELAIDNEDVAMMQILREIVATS  158 (169)
T ss_pred             ----CCCHHHHHHHCCCHHHHHHHHHHHHHh
Confidence                999999999999999999999987654

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=3.9e-20  Score=169.96  Aligned_cols=133  Identities=21%  Similarity=0.188  Sum_probs=115.3

Q ss_pred             chHHHHHHHHcCCH----HHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHH---HHHHHHcCCCCCCcCCCCCccc
Q 011309           10 SGERLVSAARDGDF----VEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI---VALLLENGADVNSRNYCGQVTR   82 (489)
Q Consensus        10 s~t~L~~Aa~~G~~----~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~ei---vk~LLe~Gad~n~~d~~g~i~~   82 (489)
                      ..++||.|++.|++    +++++|++.++.++..+..+  +||||+|+..|+.++   +++|+++|+++|.++.      
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g--~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~------   91 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHG--RQCTHMVAWYDRANAVMKIELLVNMGADINAREL------   91 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCC--CcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCC------
Confidence            34689999999998    56667788888887766655  999999999998654   8999999999999872      


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHH-ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHH
Q 011309           83 ADYLSGRTALHFAAVNGHVRCIRLVVA-DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA  161 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g~~~~vk~LL~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~A  161 (489)
                         ..|.||||+|+..|+.+++++|+. .+..                                 ++.++..|.||||+|
T Consensus        92 ---~~g~TpLh~A~~~g~~~iv~~Ll~~~gad---------------------------------~~~~d~~g~tpL~~A  135 (166)
T PHA02743         92 ---GTGNTLLHIAASTKNYELAEWLCRQLGVN---------------------------------LGAINYQHETAYHIA  135 (166)
T ss_pred             ---CCCCcHHHHHHHhCCHHHHHHHHhccCCC---------------------------------ccCcCCCCCCHHHHH
Confidence               179999999999999999999995 4432                                 678889999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCccccccc
Q 011309          162 ALNGYFDCVQLLLDLHANVSAVTFH  186 (489)
Q Consensus       162 a~~g~~e~v~~LL~~Gadvn~~~~~  186 (489)
                      +..++.+++++|+++|++++.++..
T Consensus       136 ~~~~~~~iv~~Ll~~ga~~~~~~~~  160 (166)
T PHA02743        136 YKMRDRRMMEILRANGAVCDDPLSI  160 (166)
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcccC
Confidence            9999999999999999999998865

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.84  E-value=5.2e-20  Score=183.23  Aligned_cols=151  Identities=19%  Similarity=0.156  Sum_probs=120.2

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .++||.|+..|+.+++++|+++|+++|.++.      .+...|.||||+|+..|+.+++++|++.|++            
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~------~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD------------   95 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFP------LSENSKTNPLIYAIDCDNDDAAKLLIRYGAD------------   95 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCc------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            5778888888999999999999999998741      0012799999999999999999999987655            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccc-cCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKA-ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~-d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                           +|.. +..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|
T Consensus        96 ---------------------VN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~----------G~TpL~~A  144 (300)
T PHA02884         96 ---------------------VNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTND----------MVTPIELA  144 (300)
T ss_pred             ---------------------cCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHH
Confidence                                 6765 457999999999999999999999999999998876          89999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       205 a~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      +..++.+++.++.  |..   .+..+.+|++++   ++.+++++|..+.
T Consensus       145 ~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~---~n~ei~~~Lish~  185 (300)
T PHA02884        145 LMICNNFLAFMIC--DNE---ISNFYKHPKKIL---INFDILKILVSHF  185 (300)
T ss_pred             HHhCChhHHHHhc--CCc---ccccccChhhhh---ccHHHHHHHHHHH
Confidence            9988888876664  322   456677888875   3566666665543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=7.8e-21  Score=185.54  Aligned_cols=158  Identities=25%  Similarity=0.267  Sum_probs=132.1

Q ss_pred             CCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccc
Q 011309           71 VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA  150 (489)
Q Consensus        71 ~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~  150 (489)
                      +|..|.          +|.|+||||+.++++++|+.||+.+.-                                .++.+
T Consensus       261 VNlaDs----------NGNTALHYsVSHaNF~VV~~LLDSgvC--------------------------------~VD~q  298 (452)
T KOG0514|consen  261 VNLADS----------NGNTALHYAVSHANFDVVSILLDSGVC--------------------------------DVDQQ  298 (452)
T ss_pred             hhhhcC----------CCCeeeeeeecccchHHHHHHhccCcc--------------------------------ccccc
Confidence            566666          999999999999999999999976432                                28899


Q ss_pred             cCCCccHHHHHHHc-----CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 011309          151 ADGGITALHMAALN-----GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  225 (489)
Q Consensus       151 d~~G~TpLh~Aa~~-----g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~  225 (489)
                      ++-|+||+|+|+..     .+.++|+.|+..| |||++...         .|+|+||+|+.+|+.++|+.||..|||+|+
T Consensus       299 NrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ---------~gQTALMLAVSHGr~d~vk~LLacgAdVNi  368 (452)
T KOG0514|consen  299 NRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQ---------HGQTALMLAVSHGRVDMVKALLACGADVNI  368 (452)
T ss_pred             ccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhh---------hcchhhhhhhhcCcHHHHHHHHHccCCCcc
Confidence            99999999999874     4678999998764 67877655         499999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCcHhHHHHhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHcCCcccc
Q 011309          226 LNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSST  286 (489)
Q Consensus       226 ~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~~~~  286 (489)
                      +|.+|-|+|+.|+.+||.+|+++|+.....++...  +..++++|    .++-+.|++.+-
T Consensus       369 QDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLt--D~DgSTAl----~IAleagh~eIa  423 (452)
T KOG0514|consen  369 QDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLT--DVDGSTAL----SIALEAGHREIA  423 (452)
T ss_pred             ccCCccHHHhhhhhhChHHHHHHHhccCcccceee--cCCCchhh----hhHHhcCchHHH
Confidence            99999999999999999999999988777665533  44556664    456666665443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=6.9e-20  Score=182.31  Aligned_cols=151  Identities=16%  Similarity=0.155  Sum_probs=128.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCC--CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYST--FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~--~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      .++||.|++.|+.++|++|+++|++++....  +..|.||||+|+..|+.+++++|+++||++|..+.         ..|
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~---------~~g  104 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE---------EAK  104 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC---------CCC
Confidence            4689999999999999999999999987642  22459999999999999999999999999998642         179


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|+..+++                                 ++.+|..|.||||+|+..++.+
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAd---------------------------------in~kd~~G~TpL~~A~~~~~~~  151 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGAD---------------------------------INIQTNDMVTPIELALMICNNF  151 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHhCChh
Confidence            9999999999999999999987655                                 7888999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  221 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga  221 (489)
                      ++.++.  |..+   +..          +.+|++++   ++.|++++|+.+++
T Consensus       152 ~~~~~~--~~~~---~~~----------~~~~~~~~---~n~ei~~~Lish~v  186 (300)
T PHA02884        152 LAFMIC--DNEI---SNF----------YKHPKKIL---INFDILKILVSHFI  186 (300)
T ss_pred             HHHHhc--CCcc---ccc----------ccChhhhh---ccHHHHHHHHHHHH
Confidence            886665  3322   222          67888875   47999999999987

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.83  E-value=1.7e-20  Score=191.75  Aligned_cols=171  Identities=33%  Similarity=0.433  Sum_probs=153.7

Q ss_pred             HHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccc
Q 011309           48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD  127 (489)
Q Consensus        48 pLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~  127 (489)
                      .+.-|+..|..+-|..||..|+++|..|.          +|.|+||-++...+.+||++|++.++.              
T Consensus        43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~----------DglTalhq~~id~~~e~v~~l~e~ga~--------------   98 (527)
T KOG0505|consen   43 VFLEACSRGDLEEVRKLLNRGASPNLCNV----------DGLTALHQACIDDNLEMVKFLVENGAN--------------   98 (527)
T ss_pred             HHHhccccccHHHHHHHhccCCCccccCC----------ccchhHHHHHhcccHHHHHHHHHhcCC--------------
Confidence            45557788999999999999999999998          999999999999999999999987654              


Q ss_pred             cCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccC-------------
Q 011309          128 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI-------------  194 (489)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~-------------  194 (489)
                                         ||..|..|+||||.|+..||..++++|+++|+++.+.+..++.+.++.             
T Consensus        99 -------------------Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~  159 (527)
T KOG0505|consen   99 -------------------VNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEM  159 (527)
T ss_pred             -------------------ccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHH
Confidence                               999999999999999999999999999999999999999988887543             


Q ss_pred             ------------------------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          195 ------------------------------------GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       195 ------------------------------------~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                                                          ..|.|+||+|+.+|..++.++||++|.+++++|.+||||||.|+
T Consensus       160 ~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  160 ARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             HHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH
Confidence                                                34899999999999999999999999999999999999999999


Q ss_pred             HcCcHhHHHHhcC-CCCCCCCCCC
Q 011309          239 MWGRHWLEPLLAP-SSDAVMPRFH  261 (489)
Q Consensus       239 ~~g~~~i~~LL~~-~~~~~~~~~~  261 (489)
                      .||..++.++|.. +++.+...+.
T Consensus       240 ~Wg~~~~~elL~~~ga~~d~~t~~  263 (527)
T KOG0505|consen  240 HWGQEDACELLVEHGADMDAKTKM  263 (527)
T ss_pred             HhhhHhHHHHHHHhhcccchhhhc
Confidence            9999998877755 4555555443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=4.4e-20  Score=167.21  Aligned_cols=126  Identities=21%  Similarity=0.224  Sum_probs=105.1

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCC-------CCCcCCCCCcccccCCCCChHHHHHHHcCCHH---HHHHHHHccCC
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGAD-------VNSRNYCGQVTRADYLSGRTALHFAAVNGHVR---CIRLVVADFVP  113 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad-------~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~---~vk~LL~~~~~  113 (489)
                      .|.||||+|++.|+.  +++|+..+..       ++.+|.          .|+||||+|+..|+.+   ++++|++.+..
T Consensus        16 ~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~----------~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad   83 (154)
T PHA02736         16 EGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNR----------HGKQCVHIVSNPDKADPQEKLKLLMEWGAD   83 (154)
T ss_pred             CCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcC----------CCCEEEEeecccCchhHHHHHHHHHHcCCC
Confidence            359999999999983  4444433322       223455          8999999999999874   67888876543


Q ss_pred             CCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCCHHHHHHHHh-cCCCcccccccCCCcc
Q 011309          114 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLD-LHANVSAVTFHYGTSM  191 (489)
Q Consensus       114 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~v~~LL~-~Gadvn~~~~~~~~~~  191 (489)
                                                       ++.++ ..|.||||+|+..|+.+++++|++ .|++++..+..     
T Consensus        84 ---------------------------------in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~-----  125 (154)
T PHA02736         84 ---------------------------------INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYA-----  125 (154)
T ss_pred             ---------------------------------ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCC-----
Confidence                                             77787 489999999999999999999998 59999998876     


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309          192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  224 (489)
Q Consensus       192 ~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn  224 (489)
                           |.||||+|+..|+.+++++|+++|++.+
T Consensus       126 -----g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        126 -----FKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             -----CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                 9999999999999999999999999875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.81  E-value=8.4e-20  Score=165.39  Aligned_cols=129  Identities=22%  Similarity=0.230  Sum_probs=105.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.  +.+++.....                          .......++..|..|.||||+|+..|+
T Consensus        16 ~g~tpLh~A~~~g~~--~~l~~~~~~~--------------------------~~~~~~~~~~~d~~g~t~Lh~a~~~~~   67 (154)
T PHA02736         16 EGENILHYLCRNGGV--TDLLAFKNAI--------------------------SDENRYLVLEYNRHGKQCVHIVSNPDK   67 (154)
T ss_pred             CCCCHHHHHHHhCCH--HHHHHHHHHh--------------------------cchhHHHHHHhcCCCCEEEEeecccCc
Confidence            899999999999983  3443321000                          000112245678899999999999998


Q ss_pred             H---HHHHHHHhcCCCcccccc-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcC
Q 011309          167 F---DCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWG  241 (489)
Q Consensus       167 ~---e~v~~LL~~Gadvn~~~~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~g  241 (489)
                      .   +++++|+++|++++.++. .          |+||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..|
T Consensus        68 ~~~~e~v~~Ll~~gadin~~~~~~----------g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~  137 (154)
T PHA02736         68 ADPQEKLKLLMEWGADINGKERVF----------GNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERH  137 (154)
T ss_pred             hhHHHHHHHHHHcCCCccccCCCC----------CCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcC
Confidence            7   468999999999999874 4          9999999999999999999998 59999999999999999999999


Q ss_pred             cHhHHHHhcCCC
Q 011309          242 RHWLEPLLAPSS  253 (489)
Q Consensus       242 ~~~i~~LL~~~~  253 (489)
                      +.+++++|...+
T Consensus       138 ~~~i~~~Ll~~g  149 (154)
T PHA02736        138 DAKMMNILRAKG  149 (154)
T ss_pred             CHHHHHHHHHcC
Confidence            999988776543

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.78  E-value=1.3e-18  Score=154.42  Aligned_cols=87  Identities=36%  Similarity=0.306  Sum_probs=59.8

Q ss_pred             hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 011309          147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  226 (489)
Q Consensus       147 in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~  226 (489)
                      +|.+|.+|.||||.|+++||.++|+.|+..||++++++..          |+||||-|+.+++.+++-+||++|+|+|+.
T Consensus        90 vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~----------GWTPLhSAckWnN~~va~~LLqhgaDVnA~  159 (228)
T KOG0512|consen   90 VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNE----------GWTPLHSACKWNNFEVAGRLLQHGADVNAQ  159 (228)
T ss_pred             ccccccccccHHHHHHhcCchHHHHHHHHccCCccccccc----------CccchhhhhcccchhHHHHHHhccCccccc
Confidence            6666667777777777777777777777777777666655          677777777777777777777777777766


Q ss_pred             CCCCCcHHHHHHHcCcH
Q 011309          227 NCNGWLPLDVARMWGRH  243 (489)
Q Consensus       227 d~~G~TpL~~A~~~g~~  243 (489)
                      .+..+||||+|+...+.
T Consensus       160 t~g~ltpLhlaa~~rn~  176 (228)
T KOG0512|consen  160 TKGLLTPLHLAAGNRNS  176 (228)
T ss_pred             ccccchhhHHhhcccch
Confidence            66666777777665544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.78  E-value=1.7e-19  Score=194.56  Aligned_cols=284  Identities=21%  Similarity=0.216  Sum_probs=222.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .++|-.|+..|+.|+|+.|+.+|+++..+++.+  .+||.+|+-.||..+|+.||.+.++++....         ..+.|
T Consensus       758 ~t~LT~acaggh~e~vellv~rganiehrdkkg--f~plImaatagh~tvV~~llk~ha~veaQsd---------rtkdt  826 (2131)
T KOG4369|consen  758 KTNLTSACAGGHREEVELLVVRGANIEHRDKKG--FVPLIMAATAGHITVVQDLLKAHADVEAQSD---------RTKDT  826 (2131)
T ss_pred             cccccccccCccHHHHHHHHHhccccccccccc--chhhhhhcccCchHHHHHHHhhhhhhhhhcc---------cccCc
Confidence            468999999999999999999999998888777  9999999999999999999999999987654         38999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCC---ccccccccccccCCchhhhhhhhhhhhhhhhccc--cCCCccHHHHHHHcC
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVP---FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA--ADGGITALHMAALNG  165 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~--d~~G~TpLh~Aa~~g  165 (489)
                      +|-+|+..|+.++|++||..++.+..   ...+++.++...++...+..++...   ..||.+  .+.|..||++|..+|
T Consensus       827 ~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~G---seInSrtgSklgisPLmlatmng  903 (2131)
T KOG4369|consen  827 MLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSG---SEINSRTGSKLGISPLMLATMNG  903 (2131)
T ss_pred             eEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcc---cccccccccccCcchhhhhhhcc
Confidence            99999999999999999998775544   3455555655555555555443322   224444  467999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309          166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      |.+.++.|++.|.|+|+.-..         ..+|+|.+|+..|+.|+|.+||.+.+++..+-+.|.|||+-++..|+.++
T Consensus       904 h~~at~~ll~~gsdiNaqIeT---------NrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdv  974 (2131)
T KOG4369|consen  904 HQAATLSLLQPGSDINAQIET---------NRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDV  974 (2131)
T ss_pred             ccHHHHHHhcccchhcccccc---------ccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCcccc
Confidence            999999999999999975332         37899999999999999999999999999999999999999999999999


Q ss_pred             HHHh-cCCCCCCCCCCC--CCCCcc----------hhhHH----HHHHHHHcCCccccccCCC-Ccchhhhhhhhccccc
Q 011309          246 EPLL-APSSDAVMPRFH--PSNYLS----------LPLLS----VLNVARECGLLSSTTSSSD-DADTCAVCLERACTVA  307 (489)
Q Consensus       246 ~~LL-~~~~~~~~~~~~--~~~~~~----------~pl~~----~l~~a~~~G~~~~~~a~~~-~~~~C~iCle~~~~v~  307 (489)
                      -.+| ..++|.+....+  .+.++-          .+++.    .+++-..+|.+.+|.+... ....|.+.++...+..
T Consensus       975 g~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad~d 1054 (2131)
T KOG4369|consen  975 GNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVADAD 1054 (2131)
T ss_pred             chhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccchHHhhcccChh
Confidence            7666 556666554332  111111          11111    2445556676777764433 3467889999999999


Q ss_pred             ccCCcchhhh
Q 011309          308 AEGCRHELCV  317 (489)
Q Consensus       308 ~~~C~H~~C~  317 (489)
                      -..|+..-|.
T Consensus      1055 ~qdnr~~S~~ 1064 (2131)
T KOG4369|consen 1055 QQDNRTNSRT 1064 (2131)
T ss_pred             hhhccccccc
Confidence            9999875443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=2e-18  Score=153.12  Aligned_cols=90  Identities=34%  Similarity=0.417  Sum_probs=45.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC-cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHH
Q 011309          158 LHMAALNGYFDCVQLLLDLHAN-VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDV  236 (489)
Q Consensus       158 Lh~Aa~~g~~e~v~~LL~~Gad-vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~  236 (489)
                      +.+|+..+....|+.||+..++ ||.+|..          |.||||.|+.+|+++||+.|+..||+++++...||||||-
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D----------~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhS  136 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDED----------EYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHS  136 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccc----------cccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhh
Confidence            3445555555555555544332 4444443          5555555555555555555555555555555555555555


Q ss_pred             HHHcCcHhHH-HHhcCCCCCCC
Q 011309          237 ARMWGRHWLE-PLLAPSSDAVM  257 (489)
Q Consensus       237 A~~~g~~~i~-~LL~~~~~~~~  257 (489)
                      |++|.+.+++ .||..+++++.
T Consensus       137 AckWnN~~va~~LLqhgaDVnA  158 (228)
T KOG0512|consen  137 ACKWNNFEVAGRLLQHGADVNA  158 (228)
T ss_pred             hhcccchhHHHHHHhccCcccc
Confidence            5555555544 22333444443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.75  E-value=1.4e-18  Score=164.99  Aligned_cols=135  Identities=37%  Similarity=0.466  Sum_probs=118.3

Q ss_pred             HHhCcHHHHHHHH-HcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCc
Q 011309           53 AAKGHNEIVALLL-ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG  131 (489)
Q Consensus        53 a~~G~~eivk~LL-e~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~  131 (489)
                      ++.|+.--|++.| +..-|.|.-|.          .|.+|||||+..||..+|+.|+..|+.                  
T Consensus         8 cregna~qvrlwld~tehdln~gdd----------hgfsplhwaakegh~aivemll~rgar------------------   59 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDD----------HGFSPLHWAAKEGHVAIVEMLLSRGAR------------------   59 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccc----------cCcchhhhhhhcccHHHHHHHHhcccc------------------
Confidence            3444443444444 45678888887          999999999999999999999988765                  


Q ss_pred             hhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHH
Q 011309          132 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK  211 (489)
Q Consensus       132 ~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~e  211 (489)
                                     +|..+....||||+|+.+||.++|+.||+..+|+|+.+.+          |+||||||+.+|...
T Consensus        60 ---------------vn~tnmgddtplhlaaahghrdivqkll~~kadvnavneh----------gntplhyacfwgydq  114 (448)
T KOG0195|consen   60 ---------------VNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEH----------GNTPLHYACFWGYDQ  114 (448)
T ss_pred             ---------------cccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhcc----------CCCchhhhhhhcHHH
Confidence                           7777777889999999999999999999999999999988          999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCcHHHHHHHc
Q 011309          212 CCQVLLSRGASRMSLNCNGWLPLDVARMW  240 (489)
Q Consensus       212 ivk~LL~~Gadvn~~d~~G~TpL~~A~~~  240 (489)
                      +++-|+..||-+++.|++|.|||..|--.
T Consensus       115 iaedli~~ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen  115 IAEDLISCGAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             HHHHHHhccceeeecccCCCCchhhhchH
Confidence            99999999999999999999999988543

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=7.9e-18  Score=179.73  Aligned_cols=212  Identities=25%  Similarity=0.210  Sum_probs=162.4

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCC---------CCcccCCCCCCchHHHHHHH---hCcHHHHHHHHHcCCCCCCcCCCCC
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNP---------CLAKYSTFGGLNSPLHFAAA---KGHNEIVALLLENGADVNSRNYCGQ   79 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~---------~l~~~~~~~~g~TpLh~Aa~---~G~~eivk~LLe~Gad~n~~d~~g~   79 (489)
                      .+++.|...|.++.+..|+..+.         +++.+...  |.|.||.|.-   .++.++++.||+.-..  ..|.   
T Consensus       103 ~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~--GET~Lh~~lL~~~~~~n~la~~LL~~~p~--lind---  175 (782)
T KOG3676|consen  103 DALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGAT--GETLLHKALLNLSDGHNELARVLLEIFPK--LIND---  175 (782)
T ss_pred             hhhhhccccccHHHHhccchhhhhhhhhhhhhccccccch--hhhHHHHHHhcCchhHHHHHHHHHHHhHH--Hhhh---
Confidence            57899999999999999988762         33333333  4999999997   4567999999985321  1111   


Q ss_pred             cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcc--ccCCCccH
Q 011309           80 VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK--AADGGITA  157 (489)
Q Consensus        80 i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~--~d~~G~Tp  157 (489)
                      +...++..|.||||+|+.+.+.++|++|++.+++......-........            .......|.  .-..|..|
T Consensus       176 ~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dq------------k~~rk~T~Y~G~~YfGEyP  243 (782)
T KOG3676|consen  176 IYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQ------------KASRKSTNYTGYFYFGEYP  243 (782)
T ss_pred             hhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccc------------cccccccCCcceeeeccCc
Confidence            2233456999999999999999999999998876443211111000000            000000111  12368899


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHH
Q 011309          158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLD  235 (489)
Q Consensus       158 Lh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~G~TpL~  235 (489)
                      |-+||-.++.|+|++|+++|||++++|.+          |+|.||.-+..-..++-+++|++|++  ...+|++|.|||.
T Consensus       244 LSfAAC~nq~eivrlLl~~gAd~~aqDS~----------GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLt  313 (782)
T KOG3676|consen  244 LSFAACTNQPEIVRLLLAHGADPNAQDSN----------GNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLT  313 (782)
T ss_pred             hHHHHHcCCHHHHHHHHhcCCCCCccccC----------CChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHH
Confidence            99999999999999999999999999987          99999999999999999999999999  8899999999999


Q ss_pred             HHHHcCcHhHHHHhcCC
Q 011309          236 VARMWGRHWLEPLLAPS  252 (489)
Q Consensus       236 ~A~~~g~~~i~~LL~~~  252 (489)
                      +|++.|+.+|.+.+.+.
T Consensus       314 LAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  314 LAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHhhhHHHHHHHHHh
Confidence            99999999998877766

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.72  E-value=3.9e-18  Score=184.17  Aligned_cols=238  Identities=24%  Similarity=0.207  Sum_probs=167.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +|+|-+|+..|..++|++||..|++-..+.-.+  +|||-+|...|..+||++||.+|+.||.+..        .+.|..
T Consensus       825 dt~lSlacsggr~~vvelLl~~gankehrnvsD--ytPlsla~Sggy~~iI~~llS~GseInSrtg--------Sklgis  894 (2131)
T KOG4369|consen  825 DTMLSLACSGGRTRVVELLLNAGANKEHRNVSD--YTPLSLARSGGYTKIIHALLSSGSEINSRTG--------SKLGIS  894 (2131)
T ss_pred             CceEEEecCCCcchHHHHHHHhhccccccchhh--cCchhhhcCcchHHHHHHHhhcccccccccc--------cccCcc
Confidence            355666666666666666666666555444444  6777777777777777777777777776653        346888


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCC----ccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVP----FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      ||++|..+||...++.|++.+.+.+.    ...+.+.++...+....+..+   ..+...+..+.+.|.|||+-+|..|.
T Consensus       895 PLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lL---La~~anvehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  895 PLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLL---LAAQANVEHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             hhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHH---HHHhhhhhhhcccCCcccchhhcCCc
Confidence            88888888888888888876554333    233344444444544444433   33445577888899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      +|+-++||+.|+|+|+.-..        ....|+|.+++..|+...|++||...|.+..+|++|.|+|.+|+..|+...+
T Consensus       972 vdvg~~li~~gad~nasPvp--------~T~dtalti~a~kGh~kfv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~ 1043 (2131)
T KOG4369|consen  972 VDVGNLLIAAGADTNASPVP--------NTWDTALTIPANKGHTKFVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSC 1043 (2131)
T ss_pred             cccchhhhhcccccccCCCC--------CcCCccceeecCCCchhhhHHhhCCccceecccCCCCcccchhccCCccccc
Confidence            99999999999999975433        1256888888888888888888888888888888888888888888888766


Q ss_pred             HHhc-CCCCCCCCCCCCCCCcchhhHHH
Q 011309          247 PLLA-PSSDAVMPRFHPSNYLSLPLLSV  273 (489)
Q Consensus       247 ~LL~-~~~~~~~~~~~~~~~~~~pl~~~  273 (489)
                      .+|. ..++.+..    ++...+++|.+
T Consensus      1044 ~il~~~~ad~d~q----dnr~~S~~maa 1067 (2131)
T KOG4369|consen 1044 PILVSSVADADQQ----DNRTNSRTMAA 1067 (2131)
T ss_pred             hHHhhcccChhhh----hcccccccHHH
Confidence            5554 44555443    34444555543

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=8.1e-17  Score=131.76  Aligned_cols=89  Identities=39%  Similarity=0.567  Sum_probs=78.7

Q ss_pred             HHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHH
Q 011309           92 LHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ  171 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~  171 (489)
                      ||+|+..|+.+++++|++.+..                                 ++.    |.||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---------------------------------~~~----~~~~l~~A~~~~~~~~~~   43 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---------------------------------INL----GNTALHYAAENGNLEIVK   43 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---------------------------------TTS----SSBHHHHHHHTTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---------------------------------CCC----CCCHHHHHHHcCCHHHHH
Confidence            7999999999999999975322                                 232    889999999999999999


Q ss_pred             HHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309          172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  227 (489)
Q Consensus       172 ~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d  227 (489)
                      +|++.|++++..+..          |+||||+|+..|+.+++++|+++|++++.+|
T Consensus        44 ~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   44 LLLENGADINSQDKN----------GNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTTCTT-BSTT----------SSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHhcccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999866          9999999999999999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.71  E-value=1.5e-17  Score=158.15  Aligned_cols=154  Identities=32%  Similarity=0.393  Sum_probs=123.4

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHH
Q 011309           14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALH   93 (489)
Q Consensus        14 L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh   93 (489)
                      ++.=++.|+.-.|+..|+.........++ .|.+|||+|++.||..+|+.||.+|+.+|..|.          ...||||
T Consensus         4 if~wcregna~qvrlwld~tehdln~gdd-hgfsplhwaakegh~aivemll~rgarvn~tnm----------gddtplh   72 (448)
T KOG0195|consen    4 IFGWCREGNAFQVRLWLDDTEHDLNVGDD-HGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNM----------GDDTPLH   72 (448)
T ss_pred             hhhhhhcCCeEEEEEEecCcccccccccc-cCcchhhhhhhcccHHHHHHHHhcccccccccC----------CCCcchh
Confidence            34446778777777777654433333322 349999999999999999999999999999987          6789999


Q ss_pred             HHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHH
Q 011309           94 FAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL  173 (489)
Q Consensus        94 ~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~L  173 (489)
                      +|+.+||-++|+.|++..                                 ..+|..+..|+||||||+.-|+..+.+-|
T Consensus        73 laaahghrdivqkll~~k---------------------------------advnavnehgntplhyacfwgydqiaedl  119 (448)
T KOG0195|consen   73 LAAAHGHRDIVQKLLSRK---------------------------------ADVNAVNEHGNTPLHYACFWGYDQIAEDL  119 (448)
T ss_pred             hhhhcccHHHHHHHHHHh---------------------------------cccchhhccCCCchhhhhhhcHHHHHHHH
Confidence            999999999999999653                                 33899999999999999999999999999


Q ss_pred             HhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCc
Q 011309          174 LDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL----SRGASRMS  225 (489)
Q Consensus       174 L~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL----~~Gadvn~  225 (489)
                      +..||-|+..++.          |.|||..|-    .-+-+.|+    ++|-++|.
T Consensus       120 i~~ga~v~icnk~----------g~tpldkak----p~l~~~l~e~aek~gq~~nr  161 (448)
T KOG0195|consen  120 ISCGAAVNICNKK----------GMTPLDKAK----PMLKNTLLEIAEKHGQSPNR  161 (448)
T ss_pred             HhccceeeecccC----------CCCchhhhc----hHHHHHHHHHHHHhCCCCCc
Confidence            9999999999987          999998873    33333333    35666653

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=7.6e-16  Score=131.64  Aligned_cols=121  Identities=40%  Similarity=0.581  Sum_probs=111.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.+++++|++.+..                                 .+..+..|.||||.|+..++
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~---------------------------------~~~~~~~g~~~l~~a~~~~~   52 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGAD---------------------------------VNAKDNDGRTPLHLAAKNGH   52 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCccCCCCCcHHHHHHHcCC
Confidence            799999999999999999999976532                                 36778899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      .+++++|++.|++++..+..          |.||+|+|+..++.+++++|+.+|.+++..|..|.||+++|+..++.+++
T Consensus        53 ~~~~~~ll~~~~~~~~~~~~----------~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  122 (126)
T cd00204          53 LEIVKLLLEKGADVNARDKD----------GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVV  122 (126)
T ss_pred             HHHHHHHHHcCCCccccCCC----------CCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHH
Confidence            99999999999988877755          88999999999999999999999999999999999999999999999998


Q ss_pred             HHhc
Q 011309          247 PLLA  250 (489)
Q Consensus       247 ~LL~  250 (489)
                      ++|.
T Consensus       123 ~~Ll  126 (126)
T cd00204         123 KLLL  126 (126)
T ss_pred             HHhC
Confidence            8874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.69  E-value=2.3e-16  Score=129.10  Aligned_cols=84  Identities=43%  Similarity=0.623  Sum_probs=77.6

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHH
Q 011309           14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALH   93 (489)
Q Consensus        14 L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh   93 (489)
                      ||+|++.|+++++++|++.+.+++.      |+||||+|+..|+.+++++|+++|++++.+|.          .|+||||
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------~g~t~L~   64 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDK----------NGNTALH   64 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BST----------TSSBHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCC----------CCCCHHH
Confidence            7999999999999999999987766      38999999999999999999999999999997          9999999


Q ss_pred             HHHHcCCHHHHHHHHHccCC
Q 011309           94 FAAVNGHVRCIRLVVADFVP  113 (489)
Q Consensus        94 ~Aa~~g~~~~vk~LL~~~~~  113 (489)
                      +|+.+|+.+++++|++.+.+
T Consensus        65 ~A~~~~~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   65 YAAENGNLEIVKLLLEHGAD   84 (89)
T ss_dssp             HHHHTTHHHHHHHHHHTTT-
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999987654

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.67  E-value=1.5e-15  Score=129.87  Aligned_cols=120  Identities=49%  Similarity=0.720  Sum_probs=106.6

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      |.||||+|+..|+.+++++|++.|.+.+..+.          .|.||||+|+..++.+++++|+..+.            
T Consensus         7 g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~----------~g~~~l~~a~~~~~~~~~~~ll~~~~------------   64 (126)
T cd00204           7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDN----------DGRTPLHLAAKNGHLEIVKLLLEKGA------------   64 (126)
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCCCccCC----------CCCcHHHHHHHcCCHHHHHHHHHcCC------------
Confidence            48999999999999999999999999888887          89999999999999999999997642            


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                           .++..+..|.||+|+|+..++.+++++|++.|.+++..+..          |.|||++|
T Consensus        65 ---------------------~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~----------~~~~l~~~  113 (126)
T cd00204          65 ---------------------DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD----------GRTPLHLA  113 (126)
T ss_pred             ---------------------CccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCC----------CCCHHHHH
Confidence                                 15666778889999999999999999999999888888865          88999999


Q ss_pred             HHcCCHHHHHHHH
Q 011309          205 ACGGNLKCCQVLL  217 (489)
Q Consensus       205 a~~g~~eivk~LL  217 (489)
                      ...++.+++++|+
T Consensus       114 ~~~~~~~~~~~Ll  126 (126)
T cd00204         114 AKNGHLEVVKLLL  126 (126)
T ss_pred             HhcCCHHHHHHhC
Confidence            9999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.65  E-value=1.2e-15  Score=163.12  Aligned_cols=166  Identities=33%  Similarity=0.353  Sum_probs=140.3

Q ss_pred             chHHHHHHHH---cCCHHHHHHHhhcCCCCc---ccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCc-cc
Q 011309           10 SGERLVSAAR---DGDFVEAKMLLDCNPCLA---KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQV-TR   82 (489)
Q Consensus        10 s~t~L~~Aa~---~G~~~~Vk~LL~~g~~l~---~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i-~~   82 (489)
                      .+|-||.|..   .++.++++.||+.-+.+.   ..+....|.||||+|+.+.+.++|++||+.||||+.+-. |.. ..
T Consensus       143 GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~-G~FF~~  221 (782)
T KOG3676|consen  143 GETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARAC-GAFFCP  221 (782)
T ss_pred             hhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhh-ccccCc
Confidence            3678999987   466689999999876543   223344569999999999999999999999999998753 331 11


Q ss_pred             ----cc---------CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcc
Q 011309           83 ----AD---------YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK  149 (489)
Q Consensus        83 ----~d---------~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~  149 (489)
                          ..         ...|..||-+||..++.+|+++|++.+++                                 ++.
T Consensus       222 ~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd---------------------------------~~a  268 (782)
T KOG3676|consen  222 DDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD---------------------------------PNA  268 (782)
T ss_pred             ccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC---------------------------------CCc
Confidence                11         34789999999999999999999987655                                 899


Q ss_pred             ccCCCccHHHHHHHcCCHHHHHHHHhcCCC--cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309          150 AADGGITALHMAALNGYFDCVQLLLDLHAN--VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  219 (489)
Q Consensus       150 ~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gad--vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  219 (489)
                      +|..|+|.||+-+.+-..++.++++++|++  ...++..          |-|||.+|+.-|+.++.+.+++.
T Consensus       269 qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~q----------gLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  269 QDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQ----------GLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccC----------CCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999999999999999999  6666665          99999999999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.60  E-value=1.4e-14  Score=136.49  Aligned_cols=126  Identities=40%  Similarity=0.556  Sum_probs=116.2

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCC-----HHHHHHHHHccCCCCCccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH-----VRCIRLVVADFVPSVPFEV  119 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~-----~~~vk~LL~~~~~~~~~~~  119 (489)
                      +.+++|.|+..+..+++++|++.|++++.+|.          .|.||||+|+..++     .+++++|++.+..      
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----------~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~------  136 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDA----------DGDTPLHLAALNGNPPEGNIEVAKLLLEAGAD------  136 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccC----------CCCcHHHHHHhcCCcccchHHHHHHHHHcCCC------
Confidence            37999999999999999999999999999998          99999999999999     9999999987652      


Q ss_pred             cccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCc
Q 011309          120 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGST  199 (489)
Q Consensus       120 ~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~T  199 (489)
                                              ....+.+|..|.||||+|+..|+.+++++|++.|++++..+..          |.|
T Consensus       137 ------------------------~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~----------g~t  182 (235)
T COG0666         137 ------------------------LDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSY----------GVT  182 (235)
T ss_pred             ------------------------CCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccC----------CCc
Confidence                                    1126777999999999999999999999999999999998766          999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcC
Q 011309          200 PLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       200 pLh~Aa~~g~~eivk~LL~~G  220 (489)
                      +|++|+..++.++++.|++.+
T Consensus       183 ~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         183 ALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             chhhhcccchHHHHHHHHhcC
Confidence            999999999999999999976

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.59  E-value=3.7e-15  Score=119.30  Aligned_cols=90  Identities=24%  Similarity=0.436  Sum_probs=82.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ..+.+++++|.++.|+..+..|-+++..  . +|++|||+||-.|+++++++|+..||+++.+|+          +|-||
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~--~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDK----------ygITP   70 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI--Y-GGRTPLHYAADYGQLSILEFLISIGANIQDKDK----------YGITP   70 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH--h-CCcccchHhhhcchHHHHHHHHHhccccCCccc----------cCCcH
Confidence            5699999999999999999999666543  3 459999999999999999999999999999998          99999


Q ss_pred             HHHHHHcCCHHHHHHHHHccCCC
Q 011309           92 LHFAAVNGHVRCIRLVVADFVPS  114 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~~~~~~  114 (489)
                      |.-|+..||.+||++||+.+++.
T Consensus        71 LLsAvwEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   71 LLSAVWEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             HHHHHHHhhHHHHHHHHHcCccc
Confidence            99999999999999999988753

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.56  E-value=1.6e-13  Score=129.25  Aligned_cols=124  Identities=38%  Similarity=0.463  Sum_probs=113.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .+.+++|.|+..+..+++++|+..+.+                                 ++.++..|.||||+|+..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------~~~~~~~g~t~l~~a~~~~~  118 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGAD---------------------------------VNAKDADGDTPLHLAALNGN  118 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------cccccCCCCcHHHHHHhcCC
Confidence            689999999999999999999977654                                 78899999999999999999


Q ss_pred             -----HHHHHHHHhcCC---CcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          167 -----FDCVQLLLDLHA---NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       167 -----~e~v~~LL~~Ga---dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                           .+++++|++.|+   ..+..+..          |.||||+|+..|+.+++++|++.|++++.++..|.|+++.|.
T Consensus       119 ~~~~~~~~~~~ll~~g~~~~~~~~~~~~----------g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~  188 (235)
T COG0666         119 PPEGNIEVAKLLLEAGADLDVNNLRDED----------GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA  188 (235)
T ss_pred             cccchHHHHHHHHHcCCCCCCccccCCC----------CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc
Confidence                 999999999999   44444655          999999999999999999999999999999999999999999


Q ss_pred             HcCcHhHHHHhcCCC
Q 011309          239 MWGRHWLEPLLAPSS  253 (489)
Q Consensus       239 ~~g~~~i~~LL~~~~  253 (489)
                      ..++..++.+|....
T Consensus       189 ~~~~~~~~~~l~~~~  203 (235)
T COG0666         189 KNGRIELVKLLLDKG  203 (235)
T ss_pred             ccchHHHHHHHHhcC
Confidence            999999988887754

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.53  E-value=3.2e-14  Score=113.94  Aligned_cols=95  Identities=27%  Similarity=0.385  Sum_probs=86.4

Q ss_pred             HHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccc
Q 011309           48 PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD  127 (489)
Q Consensus        48 pLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~  127 (489)
                      -+.|++++|..+-|+..+..|.++|..-           .|++|||||+.+|+.+++++|+..++.              
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-----------ggR~plhyAAD~GQl~ilefli~iGA~--------------   59 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-----------GGRTPLHYAADYGQLSILEFLISIGAN--------------   59 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-----------CCcccchHhhhcchHHHHHHHHHhccc--------------
Confidence            4789999999999999999998888764           699999999999999999999977654              


Q ss_pred             cCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 011309          128 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH  186 (489)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~  186 (489)
                                         ++.+|++|.|||.-|+..||.++|++||+.||+-......
T Consensus        60 -------------------i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~Pd   99 (117)
T KOG4214|consen   60 -------------------IQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPD   99 (117)
T ss_pred             -------------------cCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCC
Confidence                               8999999999999999999999999999999998776654

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.49  E-value=1.6e-13  Score=130.94  Aligned_cols=125  Identities=27%  Similarity=0.357  Sum_probs=112.2

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      -..||.-|+..|..+-...||+.                                 .+.+|..|..|+|+|..|+..|+.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~---------------------------------vr~vn~~D~sGMs~LahAaykGnl   58 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLST---------------------------------VRQVNQRDPSGMSVLAHAAYKGNL   58 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHH---------------------------------hhhhhccCCCcccHHHHHHhcCcH
Confidence            45789999999999988888853                                 233899999999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEP  247 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~  247 (489)
                      ++|++||++|+|||.....         .+.||||+|+..|+.++.++||+.|+.....|.-|+|+-.+|+.-|+.+++.
T Consensus        59 ~~v~lll~~gaDvN~~qhg---------~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~  129 (396)
T KOG1710|consen   59 TLVELLLELGADVNDKQHG---------TLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVA  129 (396)
T ss_pred             HHHHHHHHhCCCcCccccc---------ccccHHHHHHHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHH
Confidence            9999999999999986532         5899999999999999999999999999999999999999999999999988


Q ss_pred             HhcCCCC
Q 011309          248 LLAPSSD  254 (489)
Q Consensus       248 LL~~~~~  254 (489)
                      .+.+.-.
T Consensus       130 iINN~~t  136 (396)
T KOG1710|consen  130 IINNHIT  136 (396)
T ss_pred             HHhcccc
Confidence            8876643

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.44  E-value=8.4e-14  Score=104.09  Aligned_cols=55  Identities=38%  Similarity=0.504  Sum_probs=33.1

Q ss_pred             HHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 011309          173 LLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  237 (489)
Q Consensus       173 LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A  237 (489)
                      ||++| ++++..|..          |.||||+|+..|+.++|++|++.|+|++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~----------G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKY----------GNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TT----------S--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCC----------CCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 899999977          99999999999999999999999999999999999999998

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.43  E-value=7.5e-13  Score=146.60  Aligned_cols=106  Identities=26%  Similarity=0.296  Sum_probs=96.9

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      +.|+.|+..|+.+++++|++.+.+                                 +|.+|..|.||||+|+.+|+.++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad---------------------------------in~~d~~G~TpLh~Aa~~g~~ei  130 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD---------------------------------PNCRDYDGRTPLHIACANGHVQV  130 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCcHHHHHHHCCCHHH
Confidence            468999999999999999987544                                 78889999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc-------CCCCCccCCCCCcHHHHHH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-------GASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~-------Gadvn~~d~~G~TpL~~A~  238 (489)
                      |++|+++|++++..|..          |.||||+|+..|+.+++++|+++       |++++..+..|++|+..+.
T Consensus       131 v~~LL~~Gadvn~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        131 VRVLLEFGADPTLLDKD----------GKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999999999999976          99999999999999999999999       9999999998888876664

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.41  E-value=4.4e-13  Score=99.29  Aligned_cols=54  Identities=48%  Similarity=0.835  Sum_probs=46.4

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHH
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV  108 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL  108 (489)
                      |+||||+|++.|+.+++++|+++|+|+|.+|.          +|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~----------~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDE----------DGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-T----------TS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCC----------CCCCHHHHHHHccCHHHHHHHC
Confidence            58999999999999999999999999999998          9999999999999999999996

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.38  E-value=1.7e-12  Score=143.85  Aligned_cols=97  Identities=37%  Similarity=0.488  Sum_probs=89.3

Q ss_pred             hHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccccc
Q 011309           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG  126 (489)
Q Consensus        47 TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~  126 (489)
                      +.|+.|+..|+.++|++|+++|+++|.+|.          .|+||||+|+.+|+.+++++|++.+.+             
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~----------~G~TpLh~Aa~~g~~eiv~~LL~~Gad-------------  140 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDY----------DGRTPLHIACANGHVQVVRVLLEFGAD-------------  140 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------CCCcHHHHHHHCCCHHHHHHHHHCCCC-------------
Confidence            468999999999999999999999999998          999999999999999999999987654             


Q ss_pred             ccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhc-------CCCccccccc
Q 011309          127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-------HANVSAVTFH  186 (489)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~-------Gadvn~~~~~  186 (489)
                                          ++.+|..|.||||+|+..|+.+++++|+++       |++++..+..
T Consensus       141 --------------------vn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~  187 (664)
T PTZ00322        141 --------------------PTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFT  187 (664)
T ss_pred             --------------------CCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccC
Confidence                                788899999999999999999999999998       8888776654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=1.5e-12  Score=96.43  Aligned_cols=54  Identities=37%  Similarity=0.504  Sum_probs=46.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      |.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|++.|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            679999999999999999999999999999999999999999999999999874

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.34  E-value=7.3e-12  Score=119.64  Aligned_cols=124  Identities=33%  Similarity=0.351  Sum_probs=106.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      +...+|..|+..|+.+....||+.-..++..+..|  .|+|..|+.+|+.++|++||+.|+|+|....         ..+
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sG--Ms~LahAaykGnl~~v~lll~~gaDvN~~qh---------g~~   79 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSG--MSVLAHAAYKGNLTLVELLLELGADVNDKQH---------GTL   79 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCc--ccHHHHHHhcCcHHHHHHHHHhCCCcCcccc---------ccc
Confidence            34568999999999999999999866677666655  9999999999999999999999999997654         278


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.++.++|++.|+.                                 ....+.-|.|+-.+||.-|+-+
T Consensus        80 YTpLmFAALSGn~dvcrllldaGa~---------------------------------~~~vNsvgrTAaqmAAFVG~H~  126 (396)
T KOG1710|consen   80 YTPLMFAALSGNQDVCRLLLDAGAR---------------------------------MYLVNSVGRTAAQMAAFVGHHE  126 (396)
T ss_pred             ccHHHHHHHcCCchHHHHHHhccCc---------------------------------cccccchhhhHHHHHHHhcchH
Confidence            9999999999999999999988764                                 4445567899999999999999


Q ss_pred             HHHHHHhc
Q 011309          169 CVQLLLDL  176 (489)
Q Consensus       169 ~v~~LL~~  176 (489)
                      +|..+-++
T Consensus       127 CV~iINN~  134 (396)
T KOG1710|consen  127 CVAIINNH  134 (396)
T ss_pred             HHHHHhcc
Confidence            98876433

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.28  E-value=1.1e-11  Score=126.47  Aligned_cols=94  Identities=31%  Similarity=0.391  Sum_probs=78.4

Q ss_pred             hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 011309          147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  226 (489)
Q Consensus       147 in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~  226 (489)
                      ....++.|.|+||-|+..||.+||++||+.|++||+.|.+          ||||||.|+..+++.+++.|++.|+-+-+.
T Consensus       576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSd----------GWTPLHCAASCNnv~~ckqLVe~GaavfAs  645 (752)
T KOG0515|consen  576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSD----------GWTPLHCAASCNNVPMCKQLVESGAAVFAS  645 (752)
T ss_pred             CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCC----------CCchhhhhhhcCchHHHHHHHhccceEEee
Confidence            5567789999999999999999999999999999999977          999999999999999999999999987554


Q ss_pred             -CCCCCcHHHHHH--HcCcHhHHHHhc
Q 011309          227 -NCNGWLPLDVAR--MWGRHWLEPLLA  250 (489)
Q Consensus       227 -d~~G~TpL~~A~--~~g~~~i~~LL~  250 (489)
                       =.++.||..-.-  ..|+..+.++|.
T Consensus       646 TlSDmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  646 TLSDMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             ecccccchhhhcchhhhhHHHHHHHHH
Confidence             356777766543  346667777764

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.27  E-value=4.6e-12  Score=94.63  Aligned_cols=55  Identities=47%  Similarity=0.825  Sum_probs=31.2

Q ss_pred             HhhcC-CCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHH
Q 011309           29 LLDCN-PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFA   95 (489)
Q Consensus        29 LL~~g-~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~A   95 (489)
                      ||++| .+++..+..+  +||||+|+..|+.++|++||+.|+|++.+|.          .|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G--~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~----------~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYG--NTPLHWAARYGHSEVVRLLLQNGADPNAKDK----------DGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS----HHHHHHHHT-HHHHHHHHHCT--TT---T----------TS--HHHH-
T ss_pred             CCccCcCCCcCcCCCC--CcHHHHHHHcCcHHHHHHHHHCcCCCCCCcC----------CCCCHHHhC
Confidence            67777 5555555544  9999999999999999999999999999998          999999997

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=1.2e-11  Score=126.26  Aligned_cols=91  Identities=30%  Similarity=0.343  Sum_probs=81.5

Q ss_pred             HHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHH
Q 011309           14 LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALH   93 (489)
Q Consensus        14 L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh   93 (489)
                      |.-|+..|.+++|+..+..--|....++.|  .||||-|+..||.+||++||+.|+|+|..|.          +||||||
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEG--ITaLHNAiCaghyeIVkFLi~~ganVNa~DS----------dGWTPLH  621 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEG--ITALHNAICAGHYEIVKFLIEFGANVNAADS----------DGWTPLH  621 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccc--hhHHhhhhhcchhHHHHHHHhcCCcccCccC----------CCCchhh
Confidence            778999999999999999876665555444  9999999999999999999999999999998          9999999


Q ss_pred             HHHHcCCHHHHHHHHHccCCCCC
Q 011309           94 FAAVNGHVRCIRLVVADFVPSVP  116 (489)
Q Consensus        94 ~Aa~~g~~~~vk~LL~~~~~~~~  116 (489)
                      .|+.-+++.+++.|++.|+....
T Consensus       622 CAASCNnv~~ckqLVe~GaavfA  644 (752)
T KOG0515|consen  622 CAASCNNVPMCKQLVESGAAVFA  644 (752)
T ss_pred             hhhhcCchHHHHHHHhccceEEe
Confidence            99999999999999998765433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.99  E-value=2.3e-10  Score=122.28  Aligned_cols=93  Identities=28%  Similarity=0.295  Sum_probs=85.3

Q ss_pred             hhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309          144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  223 (489)
Q Consensus       144 ~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv  223 (489)
                      ..+.|.+|..|.|+||+|+..+..+++++||++|++++.+|..         +|+||||.|+..|++|++-+||.+|+.+
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~E---------SG~taLHRaiyyG~idca~lLL~~g~SL  112 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEE---------SGYTALHRAIYYGNIDCASLLLSKGRSL  112 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeecccc---------ccchHhhHhhhhchHHHHHHHHhcCCce
Confidence            3458999999999999999999999999999999999999987         6999999999999999999999999999


Q ss_pred             CccCCCCCcHHHHHHHcCcHhH
Q 011309          224 MSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       224 n~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      .++|++|..||+.-.+-....+
T Consensus       113 ~i~Dkeglsplq~~~r~~~~~i  134 (1267)
T KOG0783|consen  113 RIKDKEGLSPLQFLSRVLSSTI  134 (1267)
T ss_pred             EEecccCCCHHHHHhhcccccc
Confidence            9999999999998887443333

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.96  E-value=1.7e-09  Score=110.00  Aligned_cols=91  Identities=32%  Similarity=0.415  Sum_probs=82.9

Q ss_pred             hccccCCCccH------HHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309          147 VNKAADGGITA------LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       147 in~~d~~G~Tp------Lh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  220 (489)
                      ...+|++|.|.      ||-.++.|+.+..--||..||++|..+..         .|.||||+|++.|+.--+++|+-+|
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpe---------kg~TpLHvAAk~Gq~~Q~ElL~vYG  190 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPE---------KGNTPLHVAAKAGQILQAELLAVYG  190 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcc---------cCCchhHHHHhccchhhhhHHhhcc
Confidence            45677787764      99999999999998899999999998876         5999999999999999999999999


Q ss_pred             CCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          221 ASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       221 advn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      ||+++.|.+|.||+.||...||.++.
T Consensus       191 AD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  191 ADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             CCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            99999999999999999999998654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.79  E-value=4.7e-09  Score=106.46  Aligned_cols=86  Identities=28%  Similarity=0.344  Sum_probs=80.9

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChH
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ++++|++.||+..++.+.-.|.++...+.+.  +|+||+||..|+.+++|+||+. +.+++.+|+          .|+||
T Consensus       509 ~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~--RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR----------w~rtP  576 (622)
T KOG0506|consen  509 NVMYAAKNGDLSALRRFALQGMDLETKDYDD--RTALHVAAAEGHVEVVKFLLNACKVDPDPKDR----------WGRTP  576 (622)
T ss_pred             hhhhhhhcCCHHHHHHHHHhccccccccccc--chhheeecccCceeHHHHHHHHHcCCCChhhc----------cCCCc
Confidence            7999999999999999999999998877776  9999999999999999999985 899999998          89999


Q ss_pred             HHHHHHcCCHHHHHHHHHc
Q 011309           92 LHFAAVNGHVRCIRLVVAD  110 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~~  110 (489)
                      |.-|...+|.+++++|-+.
T Consensus       577 lDdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  577 LDDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             chHhHhcCcHHHHHHHHHH
Confidence            9999999999999999864

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.71  E-value=1e-08  Score=104.00  Aligned_cols=96  Identities=20%  Similarity=0.251  Sum_probs=87.8

Q ss_pred             ccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCC
Q 011309          150 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNC  228 (489)
Q Consensus       150 ~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~  228 (489)
                      ++.++.-.+++|++.|++..++-+.-.|.|++..|.+          .+|+||+||..|+++++++||+ .+.|++.+|.
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD----------~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDR  571 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYD----------DRTALHVAAAEGHVEVVKFLLNACKVDPDPKDR  571 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhcccccccccc----------cchhheeecccCceeHHHHHHHHHcCCCChhhc
Confidence            3456778999999999999999999899999999977          8999999999999999999997 5999999999


Q ss_pred             CCCcHHHHHHHcCcHhHHHHhcCCCCC
Q 011309          229 NGWLPLDVARMWGRHWLEPLLAPSSDA  255 (489)
Q Consensus       229 ~G~TpL~~A~~~g~~~i~~LL~~~~~~  255 (489)
                      .|+|||.-|...+|.+++++|.+....
T Consensus       572 w~rtPlDdA~~F~h~~v~k~L~~~~~~  598 (622)
T KOG0506|consen  572 WGRTPLDDAKHFKHKEVVKLLEEAQYP  598 (622)
T ss_pred             cCCCcchHhHhcCcHHHHHHHHHHhcc
Confidence            999999999999999999999876553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.69  E-value=8e-08  Score=99.27  Aligned_cols=121  Identities=26%  Similarity=0.269  Sum_probs=107.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCC--CCCcCCCCCcccccCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD--VNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad--~n~~d~~g~i~~~d~~~G   88 (489)
                      ++.|..|+..+|+-.++.+...|.++..+..+.  .|.||+|+..|+-|||+|+|++|..  ++..|.          .|
T Consensus       867 seeil~av~~~D~~klqE~h~~gg~ll~~~~~~--~sllh~a~~tg~~eivkyildh~p~elld~~de----------~g  934 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNGGSLLIQGPDH--CSLLHYAAKTGNGEIVKYILDHGPSELLDMADE----------TG  934 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcCCceEeeCcch--hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhh----------hh
Confidence            456899999999999999999999988888777  8999999999999999999999854  455555          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .|+||.|+..++-.+.++|++.++.                                 +...|..|.||-..|-+.|+.+
T Consensus       935 et~lhkaa~~~~r~vc~~lvdagas---------------------------------l~ktd~kg~tp~eraqqa~d~d  981 (1004)
T KOG0782|consen  935 ETALHKAACQRNRAVCQLLVDAGAS---------------------------------LRKTDSKGKTPQERAQQAGDPD  981 (1004)
T ss_pred             hHHHHHHHHhcchHHHHHHHhcchh---------------------------------heecccCCCChHHHHHhcCCch
Confidence            9999999999999999999987653                                 7788999999999999999999


Q ss_pred             HHHHHHhc
Q 011309          169 CVQLLLDL  176 (489)
Q Consensus       169 ~v~~LL~~  176 (489)
                      +..||-..
T Consensus       982 laayle~r  989 (1004)
T KOG0782|consen  982 LAAYLESR  989 (1004)
T ss_pred             HHHHHhhh
Confidence            99998643

>PF13606 Ank_3: Ankyrin repeat

Probab=98.69  E-value=2.1e-08  Score=64.73  Aligned_cols=29  Identities=62%  Similarity=0.891  Sum_probs=27.3

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCC
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNS   73 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~   73 (489)
                      |+||||+|++.|+.|+|++||++|+|+|.
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            59999999999999999999999999974

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.68  E-value=7.3e-08  Score=98.38  Aligned_cols=87  Identities=29%  Similarity=0.348  Sum_probs=81.6

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ..||..++.|+++.--.||..|++.+.+.... |.||||+|++.|+.--+++|+-.|||++..|.          +|+||
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpek-g~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~----------~GmtP  203 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEK-GNTPLHVAAKAGQILQAELLAVYGADPGAQDS----------SGMTP  203 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCccc-CCchhHHHHhccchhhhhHHhhccCCCCCCCC----------CCCcH
Confidence            47999999999999999999999999887655 49999999999999999999999999999998          99999


Q ss_pred             HHHHHHcCCHHHHHHHHH
Q 011309           92 LHFAAVNGHVRCIRLVVA  109 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL~  109 (489)
                      +.||-..||-++.+.|++
T Consensus       204 ~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  204 VDYARQGGHHELAERLVE  221 (669)
T ss_pred             HHHHHhcCchHHHHHHHH
Confidence            999999999999988885

>PF13606 Ank_3: Ankyrin repeat

Probab=98.66  E-value=3e-08  Score=64.03  Aligned_cols=29  Identities=45%  Similarity=0.733  Sum_probs=27.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 011309          197 GSTPLHFAACGGNLKCCQVLLSRGASRMS  225 (489)
Q Consensus       197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~  225 (489)
                      |+||||+|+..|+.|+|++||++|+|+|+
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            89999999999999999999999999974

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.66  E-value=1.6e-08  Score=108.40  Aligned_cols=101  Identities=24%  Similarity=0.346  Sum_probs=78.9

Q ss_pred             HcCCHHHHHHHhhc-CCCC-cccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHH
Q 011309           19 RDGDFVEAKMLLDC-NPCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA   96 (489)
Q Consensus        19 ~~G~~~~Vk~LL~~-g~~l-~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa   96 (489)
                      ..|...-++.++++ +.++ +..+.+|  +|+||+|+..|..++++|||++|+|++.+|+         ..|+||||-|+
T Consensus        26 tKs~~Nqlk~F~~k~c~n~anikD~~G--R~alH~~~S~~k~~~l~wLlqhGidv~vqD~---------ESG~taLHRai   94 (1267)
T KOG0783|consen   26 TKSEPNQLKGFSEKSCQNLANIKDRYG--RTALHIAVSENKNSFLRWLLQHGIDVFVQDE---------ESGYTALHRAI   94 (1267)
T ss_pred             hcCChhHHHHHHHHhhhhhhhHHHhhc--cceeeeeeccchhHHHHHHHhcCceeeeccc---------cccchHhhHhh
Confidence            33444346666654 3333 3333444  9999999999999999999999999999997         48999999999


Q ss_pred             HcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309           97 VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  163 (489)
Q Consensus        97 ~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~  163 (489)
                      ++||.+|+-+||..+..                                 +..+|++|..||..-.+
T Consensus        95 yyG~idca~lLL~~g~S---------------------------------L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   95 YYGNIDCASLLLSKGRS---------------------------------LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hhchHHHHHHHHhcCCc---------------------------------eEEecccCCCHHHHHhh
Confidence            99999999999987643                                 66677777777776555

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.64  E-value=4.4e-08  Score=64.70  Aligned_cols=32  Identities=56%  Similarity=0.977  Sum_probs=30.1

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCC
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNY   76 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~   76 (489)
                      |+||||+|+..|+.+++++||++|++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            59999999999999999999999999998873

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.63  E-value=4.7e-08  Score=64.53  Aligned_cols=32  Identities=38%  Similarity=0.576  Sum_probs=30.6

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC
Q 011309          197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNC  228 (489)
Q Consensus       197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~  228 (489)
                      |.||||+|+..|+.++|++||++|++++.+|+
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            89999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.62  E-value=1e-07  Score=99.00  Aligned_cols=95  Identities=32%  Similarity=0.434  Sum_probs=85.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCC--cccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCL--AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l--~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      +..|..|+...|+..+-.||.+|...  +.....++|.|+||+|++.|+..+.++|+=+|+|+..+|.          +|
T Consensus       625 gqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda----------~g  694 (749)
T KOG0705|consen  625 GQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA----------HG  694 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc----------CC
Confidence            45799999999999999999998664  4444566779999999999999999999999999999998          99


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCC
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSV  115 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~  115 (489)
                      +|+|.||-+.|.-+|+..|++.|.+..
T Consensus       695 ~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  695 RTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             chhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            999999999999999999999887644

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.59  E-value=1.7e-07  Score=96.87  Aligned_cols=120  Identities=24%  Similarity=0.235  Sum_probs=103.0

Q ss_pred             HHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccccccc
Q 011309           49 LHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR  128 (489)
Q Consensus        49 Lh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~  128 (489)
                      |.-|+..+.+--++.+..+|-++-.++.          +..|.||||+..|+-++|+|||+++..               
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~----------~~~sllh~a~~tg~~eivkyildh~p~---------------  924 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGP----------DHCSLLHYAAKTGNGEIVKYILDHGPS---------------  924 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCc----------chhhHHHHHHhcCChHHHHHHHhcCCH---------------
Confidence            4556666666556666677888888887          889999999999999999999987532               


Q ss_pred             CCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcC
Q 011309          129 GDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG  208 (489)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g  208 (489)
                                      .+++..|..|.|+||.|+..++..+.++|++.|+.+...|..          |.||-..|-..|
T Consensus       925 ----------------elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~k----------g~tp~eraqqa~  978 (1004)
T KOG0782|consen  925 ----------------ELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSK----------GKTPQERAQQAG  978 (1004)
T ss_pred             ----------------HHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccC----------CCChHHHHHhcC
Confidence                            347888899999999999999999999999999999988876          999999999999


Q ss_pred             CHHHHHHHHHc
Q 011309          209 NLKCCQVLLSR  219 (489)
Q Consensus       209 ~~eivk~LL~~  219 (489)
                      ..+...||-.+
T Consensus       979 d~dlaayle~r  989 (1004)
T KOG0782|consen  979 DPDLAAYLESR  989 (1004)
T ss_pred             CchHHHHHhhh
Confidence            99999998643

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.57  E-value=2.1e-07  Score=101.15  Aligned_cols=85  Identities=21%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCC--CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPC--LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYL   86 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~--l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~   86 (489)
                      .++..+..|+..||+..|+..++....  ++....+.-|+++|++|+.+.|.|++++|++++..+  .            
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g------------   89 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G------------   89 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c------------
Confidence            345567777777777777777765433  443333444477777777777777777777765444  2            


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHc
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVAD  110 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~  110 (489)
                         .+|.+|+..|.+++|++++.+
T Consensus        90 ---dALL~aI~~~~v~~VE~ll~~  110 (822)
T KOG3609|consen   90 ---DALLLAIAVGSVPLVELLLVH  110 (822)
T ss_pred             ---hHHHHHHHHHHHHHHHHHHhc
Confidence               367777777777777777754

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.53  E-value=1.5e-07  Score=97.22  Aligned_cols=81  Identities=30%  Similarity=0.391  Sum_probs=69.0

Q ss_pred             cHHHHHHHcCCHHHHHHHH--hcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Q 011309          156 TALHMAALNGYFDCVQLLL--DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  233 (489)
Q Consensus       156 TpLh~Aa~~g~~e~v~~LL--~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp  233 (489)
                      -|||+++.....+-++.++  +.+..++..|..          |.||||+|+..|+.+.++.|+.+|||+..+|++||+|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~----------g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPP----------GRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCC----------CCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence            4699999988777665433  445667777765          9999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHhHH
Q 011309          234 LDVARMWGRHWLE  246 (489)
Q Consensus       234 L~~A~~~g~~~i~  246 (489)
                      ||-|+..|+..++
T Consensus        92 L~EAv~~g~~q~i  104 (560)
T KOG0522|consen   92 LHEAVSTGNEQII  104 (560)
T ss_pred             HHHHHHcCCHHHH
Confidence            9999999998654

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.41  E-value=7.2e-07  Score=92.81  Aligned_cols=92  Identities=26%  Similarity=0.226  Sum_probs=78.6

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCc--ccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Q 011309          156 TALHMAALNGYFDCVQLLLDLHANV--SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  233 (489)
Q Consensus       156 TpLh~Aa~~g~~e~v~~LL~~Gadv--n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp  233 (489)
                      .-|..|+...++..+-+||.+|...  |.....        +.|+|+||+|++.|++.+.++|+=+|+|+.++|.+|+|+
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~--------~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~  697 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGE--------GDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTA  697 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccC--------CCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchh
Confidence            3477788888899999999998543  333322        358999999999999999999999999999999999999


Q ss_pred             HHHHHHcCcHhHHHHhcCCCCC
Q 011309          234 LDVARMWGRHWLEPLLAPSSDA  255 (489)
Q Consensus       234 L~~A~~~g~~~i~~LL~~~~~~  255 (489)
                      |.||...|..+++..|+.++-.
T Consensus       698 l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  698 LFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             hhhHhhcccHHHHHHHHHcCCC
Confidence            9999999999999888877654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.39  E-value=7.3e-07  Score=92.33  Aligned_cols=86  Identities=30%  Similarity=0.357  Sum_probs=74.4

Q ss_pred             HHHHHHHcCCHHHHHHHhhcC--CCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           13 RLVSAARDGDFVEAKMLLDCN--PCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g--~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +||+++...+.+.+..++...  ..++..+..+  +||||+|+..|+.+.++.||.+||++..+|+          .||+
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g--~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~----------~gWs   90 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPG--RTPLHLAVRLGHVEAARILLSAGADVSIKNN----------EGWS   90 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCC--CccHHHHHHhcCHHHHHHHHhcCCCcccccc----------cccc
Confidence            599999999999888866544  3344555544  8999999999999999999999999999998          9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHc
Q 011309           91 ALHFAAVNGHVRCIRLVVAD  110 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~  110 (489)
                      |||-|+..|+.+++..++.+
T Consensus        91 ~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   91 PLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999888854

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.38  E-value=1.9e-07  Score=104.01  Aligned_cols=89  Identities=36%  Similarity=0.436  Sum_probs=82.5

Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309          152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  231 (489)
Q Consensus       152 ~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~  231 (489)
                      ..|.|+||.|+..|..-++++|++.|+++|..+..          |+||||.+...|+...+.+|+++||+.++.|.+|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~----------g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~  723 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSK----------GRTPLHHATASGHTSIACLLLKRGADPNAFDPDGK  723 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhcc----------CCCcchhhhhhcccchhhhhccccccccccCccCc
Confidence            46889999999999999999999999999999977          99999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCcHhHHHHhc
Q 011309          232 LPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       232 TpL~~A~~~g~~~i~~LL~  250 (489)
                      +||++|....+.+++.||.
T Consensus       724 ~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  724 LPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             chhhHHhhhccccHHHHHh
Confidence            9999998887777665553

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.18  E-value=6.9e-07  Score=64.91  Aligned_cols=47  Identities=34%  Similarity=0.756  Sum_probs=38.9

Q ss_pred             cchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          293 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ...|.+|++...++...+|||. +|..|+..+-.            ....||+||+.|.+
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~------------~~~~CP~Cr~~i~~   49 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLK------------RKKKCPICRQPIES   49 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH------------TTSBBTTTTBB-SE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcc------------cCCCCCcCChhhcC
Confidence            3579999999999999999999 99999999964            22359999999976

...

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.12  E-value=9.4e-06  Score=80.92  Aligned_cols=74  Identities=32%  Similarity=0.543  Sum_probs=63.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ..|..|++.||++.|++|++.|.++|..+.+.  .+||.+|...||.++|++||++||--+.-..          .|.-+
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~fD--~spL~lAsLcGHe~vvklLLenGAiC~rdtf----------~G~RC  105 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRFD--SSPLYLASLCGHEDVVKLLLENGAICSRDTF----------DGDRC  105 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhccc--ccHHHHHHHcCcHHHHHHHHHcCCccccccc----------Ccchh
Confidence            35999999999999999999999999999998  8999999999999999999999986654433          66666


Q ss_pred             HHHHHHc
Q 011309           92 LHFAAVN   98 (489)
Q Consensus        92 Lh~Aa~~   98 (489)
                      + |++.+
T Consensus       106 ~-YgaLn  111 (516)
T KOG0511|consen  106 H-YGALN  111 (516)
T ss_pred             h-hhhhh
Confidence            4 44443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.94  E-value=2.3e-05  Score=85.61  Aligned_cols=122  Identities=20%  Similarity=0.148  Sum_probs=96.9

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .+.--.-.|+.+|+.-.|+..++....                             ....+|..|.-|+++|++|+.+.+
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~-----------------------------~~lninc~d~lGr~al~iai~nen   74 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAV-----------------------------SKLNINCRDPLGRLALHIAIDNEN   74 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccc-----------------------------cccchhccChHhhhceeccccccc
Confidence            344556789999999999998864221                             123389999999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----------CccCCCCCcHHHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR----------MSLNCNGWLPLDV  236 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv----------n~~d~~G~TpL~~  236 (489)
                      .|++++|++++..+  .               .+|.+|+..|..++|++|+.+-...          ...-..+-|||.+
T Consensus        75 le~~eLLl~~~~~~--g---------------dALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliL  137 (822)
T KOG3609|consen   75 LELQELLLDTSSEE--G---------------DALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLML  137 (822)
T ss_pred             HHHHHHHhcCcccc--c---------------hHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHH
Confidence            99999999987665  2               3899999999999999999874332          1223457899999


Q ss_pred             HHHcCcHhHHHHhcCCCC
Q 011309          237 ARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       237 A~~~g~~~i~~LL~~~~~  254 (489)
                      |+..++.+|+++|+..+.
T Consensus       138 AAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen  138 AAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHhcchHHHHHHHHcCC
Confidence            999999999888766544

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.89  E-value=2.6e-05  Score=71.19  Aligned_cols=66  Identities=24%  Similarity=0.165  Sum_probs=61.4

Q ss_pred             CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          177 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       177 Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      +.++|+.|..          |+|||+.|+..|+.+.|.+|+.+| +++...|..|.+++.+|-+.|+.+++..|.++
T Consensus         2 e~~in~rD~f----------gWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINARDAF----------GWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccchhhh----------cchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            4578888876          999999999999999999999999 89999999999999999999999999988776

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.86  E-value=2.6e-05  Score=86.98  Aligned_cols=128  Identities=22%  Similarity=0.188  Sum_probs=82.2

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      |+|-||+++..++.-.++.+++- |...+..|.          .|.-.+|+ +..++.+++.+|+..             
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~----------d~qgV~hf-ca~lg~ewA~ll~~~-------------  629 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDR----------DGQGVIHF-CAALGYEWAFLPISA-------------  629 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcc----------cCCChhhH-hhhcCCceeEEEEee-------------
Confidence            36777777777777777777764 555555554          55556666 333444443333310             


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                         -+..++.+|..|+||||+|+..|+..++..|++.|++.......  ++  -...|.|+--+
T Consensus       630 -------------------~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdp--s~--~~p~g~ta~~l  686 (975)
T KOG0520|consen  630 -------------------DGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDP--SP--ETPGGKTAADL  686 (975)
T ss_pred             -------------------cccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCC--CC--CCCCCCchhhh
Confidence                               01227888888999999999999988888888888776643321  11  11247788888


Q ss_pred             HHHcCCHHHHHHHHHc
Q 011309          204 AACGGNLKCCQVLLSR  219 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~  219 (489)
                      |..+|+..+..+|-+.
T Consensus       687 a~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  687 ARANGHKGIAGYLSEK  702 (975)
T ss_pred             hhcccccchHHHHhhh
Confidence            8888887777777654

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.79  E-value=4.9e-05  Score=69.41  Aligned_cols=67  Identities=25%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             hhccccCCCccHHHHHHHcCCHHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          146 FVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       146 ~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                      .+|.+|..|+|+||.|+..|.-+++.||+.+| +.|-..+..          |.+++.+|-+.|..++|+.|.+.-.+
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~s----------sldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDES----------SLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccc----------cchHHHHHHhcChHHHHHHHHHHhcc
Confidence            38999999999999999999999999999999 899988876          99999999999999999999987444

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.68  E-value=0.0001  Score=73.72  Aligned_cols=66  Identities=30%  Similarity=0.320  Sum_probs=57.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309          156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  231 (489)
Q Consensus       156 TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~  231 (489)
                      --|..|++.|+.+.|++|++.|.+||.+|+.          ..+||.+|...|+.++||+||++||--..-.-+|.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN~vD~f----------D~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~  103 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVNAVDRF----------DSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGD  103 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcchhhcc----------cccHHHHHHHcCcHHHHHHHHHcCCcccccccCcc
Confidence            3588999999999999999999999999987          78999999999999999999999986433333343

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.66  E-value=3.9e-05  Score=85.85  Aligned_cols=85  Identities=31%  Similarity=0.427  Sum_probs=78.5

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      ++||.|+..|..-+++.|++.|++++..+..+  +||||.+...|+...+..|+++|++++..+.          .|.++
T Consensus       658 s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g--~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~----------~~~~~  725 (785)
T KOG0521|consen  658 SLLHVAVGTGDSGAVELLLQNGADVNALDSKG--RTPLHHATASGHTSIACLLLKRGADPNAFDP----------DGKLP  725 (785)
T ss_pred             chhhhhhccchHHHHHHHHhcCCcchhhhccC--CCcchhhhhhcccchhhhhccccccccccCc----------cCcch
Confidence            46999999999999999999999998888776  8999999999999999999999999999998          99999


Q ss_pred             HHHHHHcCCHHHHHHHH
Q 011309           92 LHFAAVNGHVRCIRLVV  108 (489)
Q Consensus        92 Lh~Aa~~g~~~~vk~LL  108 (489)
                      |++|....+.+++-+|.
T Consensus       726 l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  726 LDIAMEAANADIVLLLR  742 (785)
T ss_pred             hhHHhhhccccHHHHHh
Confidence            99998888888776665

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.62  E-value=5.7e-05  Score=84.28  Aligned_cols=123  Identities=22%  Similarity=0.154  Sum_probs=91.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|+|-||+++..+....++.+++-                                ....-...|.+|.-.+|++| .++
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~--------------------------------~~~~~~eld~d~qgV~hfca-~lg  619 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEW--------------------------------AGSGDLELDRDGQGVIHFCA-ALG  619 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcc--------------------------------cccCchhhcccCCChhhHhh-hcC
Confidence            788999999999998888888742                                00112334556666777744 455


Q ss_pred             HHHHHHHH-hcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCCcHHHHHHH
Q 011309          167 FDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS------LNCNGWLPLDVARM  239 (489)
Q Consensus       167 ~e~v~~LL-~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~------~d~~G~TpL~~A~~  239 (489)
                      ++.+-+|+ -.|..++.+|..          |+||||+|+.+|+..++..|++.|++...      .+-.|.|+-.+|..
T Consensus       620 ~ewA~ll~~~~~~ai~i~D~~----------G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s  689 (975)
T KOG0520|consen  620 YEWAFLPISADGVAIDIRDRN----------GWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA  689 (975)
T ss_pred             CceeEEEEeecccccccccCC----------CCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc
Confidence            56555554 467888888877          99999999999999999999988877543      34568899999999


Q ss_pred             cCcHhHHHHhcCC
Q 011309          240 WGRHWLEPLLAPS  252 (489)
Q Consensus       240 ~g~~~i~~LL~~~  252 (489)
                      .|+..+..+|.+.
T Consensus       690 ~g~~gia~~lse~  702 (975)
T KOG0520|consen  690 NGHKGIAGYLSEK  702 (975)
T ss_pred             ccccchHHHHhhh
Confidence            9998888777665

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=3.4e-05  Score=76.95  Aligned_cols=54  Identities=28%  Similarity=0.650  Sum_probs=42.6

Q ss_pred             CCcchhhhhhhhcccccccCCcchh-hhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          291 DDADTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~-C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      .....|+||+.+..++.+.||+|.- |-.||..|=...            ..||+||++|..+..+=
T Consensus       288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~------------n~CPICRqpi~~ll~i~  342 (349)
T KOG4265|consen  288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQT------------NNCPICRQPIEELLEIY  342 (349)
T ss_pred             cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhh------------cCCCccccchHhhheec
Confidence            3467899999999999999999954 777777664222            24999999999987653

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.47  E-value=6.8e-05  Score=72.65  Aligned_cols=49  Identities=35%  Similarity=0.845  Sum_probs=41.7

Q ss_pred             CCCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          289 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       289 ~~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      .....-.|.+|||..-+..+.||||-||-.|++..|....            -||+||...
T Consensus       235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~------------eCPlCR~~~  283 (293)
T KOG0317|consen  235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKA------------ECPLCREKF  283 (293)
T ss_pred             CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcccc------------CCCcccccC
Confidence            4556688999999999999999999999999999994432            199999764

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=97.16  E-value=0.0004  Score=64.28  Aligned_cols=63  Identities=19%  Similarity=0.419  Sum_probs=44.5

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCC----CCCCCCCCCCCcccccccc
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEM----VGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~----~~~~~~~~CP~CR~~I~~~  352 (489)
                      +.+.-.|.||++..-+....+|||.+|..|+..+-...+.+.+.    ....+...||+||..|..-
T Consensus        15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~   81 (193)
T PLN03208         15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA   81 (193)
T ss_pred             CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence            34567899999999999999999999999998764332211110    1122345799999999753

>PHA02929 N1R/p28-like protein; Provisional

Probab=97.09  E-value=0.00033  Score=67.52  Aligned_cols=52  Identities=27%  Similarity=0.692  Sum_probs=39.5

Q ss_pred             Ccchhhhhhhhccc--------ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          292 DADTCAVCLERACT--------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       292 ~~~~C~iCle~~~~--------v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ..+.|.+|+|..-.        ....+|+|.||..|....-..            ...||+||..+.+.++-
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~------------~~tCPlCR~~~~~v~~~  232 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE------------KNTCPVCRTPFISVIKS  232 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc------------CCCCCCCCCEeeEEeee
Confidence            45789999997543        245689999999999887422            12499999999877653

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=8.4e-05  Score=53.48  Aligned_cols=50  Identities=32%  Similarity=0.646  Sum_probs=37.7

Q ss_pred             chhhhhhhhcccccccCCcchh-hhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccccee
Q 011309          294 DTCAVCLERACTVAAEGCRHEL-CVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  354 (489)
Q Consensus       294 ~~C~iCle~~~~v~~~~C~H~~-C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  354 (489)
                      +.|.+|.|.+-+...-.|||.- |..|.+.+=           ....-.||+||.+|...+|
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~-----------~~~~g~CPiCRapi~dvIk   58 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLK-----------KALHGCCPICRAPIKDVIK   58 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHH-----------HccCCcCcchhhHHHHHHH
Confidence            8899999999999999999942 555555552           1123469999999987654

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.03  E-value=0.00065  Score=70.34  Aligned_cols=69  Identities=22%  Similarity=0.194  Sum_probs=55.5

Q ss_pred             CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                      -...|++|.+++++.|..-..    -.....-.|+||+|+..|.-++|.+||+.|+|+.++|..|+||+.++.
T Consensus       403 ~p~~ie~lken~lsgnf~~~p----e~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  403 EPDSIEALKENLLSGNFDVTP----EANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             chhHHHHHHhcCCcccccccc----cccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            356889999998877643211    000112679999999999999999999999999999999999999997

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.00  E-value=0.00039  Score=69.78  Aligned_cols=54  Identities=28%  Similarity=0.610  Sum_probs=43.4

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      .+..++|.||-|.-=+|..+||||-+|+.|.-.+= +..         +.-.|||||-.|.++-
T Consensus       366 gsTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ-~sd---------~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  366 GSTFELCKICAENDKDVKIEPCGHLLCTSCLAAWQ-DSD---------EGQTCPFCRCEIKGTE  419 (563)
T ss_pred             cchHHHHHHhhccCCCcccccccchHHHHHHHhhc-ccC---------CCCCCCceeeEecccc
Confidence            45679999999999999999999999998887662 111         1224999999999983

>PHA02926 zinc finger-like protein; Provisional

Probab=96.79  E-value=0.00083  Score=62.97  Aligned_cols=56  Identities=23%  Similarity=0.567  Sum_probs=40.5

Q ss_pred             CCCcchhhhhhhhcc---------cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERAC---------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~---------~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .+..+.|.+|+|..-         .....+|+|-||..|+..+-....      .......||+||.....
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~------~~~~~rsCPiCR~~f~~  231 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRR------ETGASDNCPICRTRFRN  231 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhcc------ccCcCCcCCCCcceeee
Confidence            345589999998741         246779999999999999975431      12234569999987663

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=96.76  E-value=0.00052  Score=48.24  Aligned_cols=41  Identities=37%  Similarity=0.767  Sum_probs=31.0

Q ss_pred             chhhhhhhhc---ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcc
Q 011309          294 DTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  346 (489)
Q Consensus       294 ~~C~iCle~~---~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR  346 (489)
                      +.|.||++..   -.+...+|+|.||..|+..+-....            .||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~------------~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNN------------SCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSS------------B-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCC------------cCCccC
Confidence            4688888876   3567788999999999999864432            599998

...

>smart00248 ANK ankyrin repeats

Probab=96.75  E-value=0.0022  Score=38.74  Aligned_cols=28  Identities=54%  Similarity=0.871  Sum_probs=24.2

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCC
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVN   72 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n   72 (489)
                      |.||||+|+..|+.+++++|++.|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4789999999999999999999888764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.74  E-value=0.0028  Score=38.30  Aligned_cols=28  Identities=50%  Similarity=0.782  Sum_probs=25.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309          197 GSTPLHFAACGGNLKCCQVLLSRGASRM  224 (489)
Q Consensus       197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn  224 (489)
                      |.||||+|+..++.+++++|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            7899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.00092  Score=63.07  Aligned_cols=58  Identities=28%  Similarity=0.556  Sum_probs=47.0

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      ..+.-.|-||||.+-+..+..|||-+|--|...+=-.         .+.+..||+||..|..=.++|
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~---------~~~~~~cPVCK~~Vs~~~vvP  101 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQT---------RPNSKECPVCKAEVSIDTVVP  101 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccceehHHHHHHHhh---------cCCCeeCCccccccccceEEe
Confidence            4556679999999999999999999999999888422         334556999999988765555

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=96.51  E-value=0.0019  Score=45.42  Aligned_cols=40  Identities=33%  Similarity=0.852  Sum_probs=30.3

Q ss_pred             hhhhhhhc---ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccc
Q 011309          296 CAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  347 (489)
Q Consensus       296 C~iCle~~---~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~  347 (489)
                      |.+|+++.   -...+..|||.+|..|+..+=            ...+.||+||+
T Consensus         2 C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~------------~~~~~CP~C~k   44 (44)
T PF14634_consen    2 CNICFEKYSEERRPRLTSCGHIFCEKCLKKLK------------GKSVKCPICRK   44 (44)
T ss_pred             CcCcCccccCCCCeEEcccCCHHHHHHHHhhc------------CCCCCCcCCCC
Confidence            56677666   246889999999999997772            23457999984

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=96.38  E-value=0.0027  Score=43.89  Aligned_cols=43  Identities=37%  Similarity=0.794  Sum_probs=31.7

Q ss_pred             hhhhhhhc-ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          296 CAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       296 C~iCle~~-~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      |.+|++.. ..+...+|+|.+|..|....-..           +...||+||..+
T Consensus         2 C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-----------~~~~Cp~C~~~~   45 (45)
T cd00162           2 CPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-----------GKNTCPLCRTPI   45 (45)
T ss_pred             CCcCchhhhCceEecCCCChhcHHHHHHHHHh-----------CcCCCCCCCCcC
Confidence            67888876 44556679999999999877432           234599999764

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.35  E-value=0.0021  Score=44.20  Aligned_cols=40  Identities=35%  Similarity=0.826  Sum_probs=31.7

Q ss_pred             hhhhhhhccccc-ccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCc
Q 011309          296 CAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  345 (489)
Q Consensus       296 C~iCle~~~~v~-~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~C  345 (489)
                      |.+|++..-... ..+|||.||..|....=..          .+...||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~----------~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN----------SGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH----------TSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHh----------cCCccCCcC
Confidence            678888887777 9999999999999988644          123459998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0022  Score=61.59  Aligned_cols=47  Identities=30%  Similarity=0.687  Sum_probs=38.7

Q ss_pred             CcchhhhhhhhcccccccCCcchhhhhHHHH-hhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          292 DADTCAVCLERACTVAAEGCRHELCVRCALY-LCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~-lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      ..-.|.+|+|..-.....+|||-||-.|.+. ++...           .-.||+||+.+
T Consensus       214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k-----------~~~CplCRak~  261 (271)
T COG5574         214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKK-----------YEFCPLCRAKV  261 (271)
T ss_pred             cccceeeeecccCCcccccccchhhHHHHHHHHHhhc-----------cccCchhhhhc
Confidence            3466999999999999999999999999998 65332           22599999865

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.97  E-value=0.05  Score=51.48  Aligned_cols=123  Identities=14%  Similarity=0.165  Sum_probs=79.9

Q ss_pred             hHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccccc
Q 011309           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG  126 (489)
Q Consensus        47 TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~  126 (489)
                      --|--|+..-+.+.+.-++...     .            .-.++|.+|+.++..+++-+|++...-.      ...+  
T Consensus       155 isledAV~AsN~~~i~~~VtdK-----k------------dA~~Am~~si~~~K~dva~~lls~f~ft------~~dv--  209 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK-----K------------DAHQAMWLSIGNAKEDVALYLLSKFNFT------KQDV--  209 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch-----H------------HHHHHHHHHhcccHHHHHHHHHhhccee------cchh--
Confidence            4567788887887777766521     1            3457888888888889999888653210      0000  


Q ss_pred             ccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH--cCCHHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHH
Q 011309          127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~--~g~~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                          +....  +.--+-++..  ..+..++++.|++| ++||..-..       ..+|.|-|--
T Consensus       210 --------------------~~~~~--~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~-------~NSGdtMLDN  260 (284)
T PF06128_consen  210 --------------------ASMEK--ELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQK-------VNSGDTMLDN  260 (284)
T ss_pred             --------------------hhcCc--chhhHHHHHhhcCCcHHHHHHHHhccccccchhhhc-------cCCcchHHHh
Confidence                                00000  1111222222  34677889999998 777765433       1359999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCC
Q 011309          204 AACGGNLKCCQVLLSRGASR  223 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadv  223 (489)
                      |...++.+++.+||++||-.
T Consensus       261 A~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  261 AMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.96  E-value=0.013  Score=61.01  Aligned_cols=73  Identities=22%  Similarity=0.203  Sum_probs=56.8

Q ss_pred             HHHHHHHhhcCCCCcccC----CCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHc
Q 011309           23 FVEAKMLLDCNPCLAKYS----TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN   98 (489)
Q Consensus        23 ~~~Vk~LL~~g~~l~~~~----~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~   98 (489)
                      .+.|.+|.+.+.+.|...    .+.-.-|+||+|+..|.-++|.+||+.|+|+..+|.          .|+||..++.  
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~----------~Grtpy~ls~--  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDG----------AGRTPYSLSA--  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhccc----------CCCCcccccc--
Confidence            566788888776664322    222236999999999999999999999999999998          9999999877  


Q ss_pred             CCHHHHHHHH
Q 011309           99 GHVRCIRLVV  108 (489)
Q Consensus        99 g~~~~vk~LL  108 (489)
                       +.++-..++
T Consensus       472 -nkdVk~~F~  480 (591)
T KOG2505|consen  472 -NKDVKSIFI  480 (591)
T ss_pred             -cHHHHHHHH
Confidence             455544444

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=95.94  E-value=0.004  Score=42.50  Aligned_cols=29  Identities=24%  Similarity=0.690  Sum_probs=24.4

Q ss_pred             hhhhhhhcccc-cccCCcchhhhhHHHHhh
Q 011309          296 CAVCLERACTV-AAEGCRHELCVRCALYLC  324 (489)
Q Consensus       296 C~iCle~~~~v-~~~~C~H~~C~~C~~~lC  324 (489)
                      |.+|++..-+. ...+|||.+|..|+...-
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~   30 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYL   30 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHH
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHH
Confidence            67888888777 789999999999998874

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=95.90  E-value=0.005  Score=42.87  Aligned_cols=42  Identities=26%  Similarity=0.659  Sum_probs=28.6

Q ss_pred             hhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCc
Q 011309          296 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  345 (489)
Q Consensus       296 C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~C  345 (489)
                      |.+|++-.-+....+|||.||..|+-.+-.....        ....||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~--------~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSG--------SGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSS--------ST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCC--------cCCCCcCC
Confidence            6789999889999999999999999888533211        11569988

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0017  Score=65.05  Aligned_cols=51  Identities=33%  Similarity=0.675  Sum_probs=40.3

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ..-.+.|++|+++.=+...-+|||.    |.|..|+...+           .||+||+.|...+|.
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~----ccct~cs~~l~-----------~CPvCR~rI~~~~k~  352 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHV----CCCTLCSKHLP-----------QCPVCRQRIRLVRKR  352 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcE----EEchHHHhhCC-----------CCchhHHHHHHHHHH
Confidence            3456889999999999999999994    33667766643           399999999887653

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.0026  Score=61.65  Aligned_cols=48  Identities=25%  Similarity=0.624  Sum_probs=37.6

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ..+|.||+|.+.+-.+..|||.+    +|+.|-+..           .-||+||+-|.+.+++
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmV----tCt~CGkrm-----------~eCPICRqyi~rvvri  347 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMV----TCTKCGKRM-----------NECPICRQYIVRVVRI  347 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEE----eehhhcccc-----------ccCchHHHHHHHHHhh
Confidence            78999999999999999999966    444443221           1499999999988764

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.74  E-value=0.0047  Score=64.57  Aligned_cols=52  Identities=29%  Similarity=0.676  Sum_probs=42.1

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ...|.|||+..-......|||-+|.-|++..=...       .--+...||+||..|.-
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s-------~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYS-------AIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhh-------cccCCccCCchhhhccc
Confidence            67899999999888888899999999999875443       12234579999999976

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.38  E-value=0.013  Score=53.24  Aligned_cols=50  Identities=24%  Similarity=0.659  Sum_probs=37.2

Q ss_pred             CCCcchhhhhhhhcccc--cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACTV--AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v--~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+.--|.+||+..-..  ....|||-||-.|+-..=...            .+||+||-.|..
T Consensus       128 ~~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~------------~~CP~C~kkIt~  179 (187)
T KOG0320|consen  128 KEGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNT------------NKCPTCRKKITH  179 (187)
T ss_pred             cccccCCCceecchhhccccccccchhHHHHHHHHHHHhC------------CCCCCcccccch
Confidence            44557799999988654  458999999999997764222            249999976653

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.05  E-value=0.014  Score=57.90  Aligned_cols=55  Identities=25%  Similarity=0.563  Sum_probs=44.8

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccccee
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  354 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  354 (489)
                      ..+...|.||-+..-.+...||+|++|-.|++.+=.-.++.          -||+||..-.-.+-
T Consensus        58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K----------~C~~CrTE~e~V~f  112 (493)
T COG5236          58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQK----------GCPLCRTETEAVVF  112 (493)
T ss_pred             ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhcc----------CCCccccccceEEE
Confidence            35567899999999999999999999999999986554432          39999988766654

>TIGR00599 rad18 DNA repair protein rad18

Probab=94.95  E-value=0.016  Score=60.09  Aligned_cols=49  Identities=27%  Similarity=0.543  Sum_probs=38.9

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ...-.|.+|++........+|+|.||..|+-..-..            ...||.||..+..
T Consensus        24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~------------~~~CP~Cr~~~~~   72 (397)
T TIGR00599        24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN------------QPKCPLCRAEDQE   72 (397)
T ss_pred             ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC------------CCCCCCCCCcccc
Confidence            345689999999988889999999999999765311            1259999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.91  E-value=0.3  Score=44.98  Aligned_cols=141  Identities=13%  Similarity=0.039  Sum_probs=88.4

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      +-.|..|+..+.+.|++.+-+...+-  ..           ..++-.-.|++..+.++|+|+-+...-            
T Consensus        47 ~CLl~HAVk~nmL~ILqkyke~L~~~--~~-----------~~q~LFElAC~~qkydiV~WI~qnL~i------------  101 (192)
T PF03158_consen   47 WCLLYHAVKYNMLSILQKYKEDLENE--RY-----------LNQELFELACEEQKYDIVKWIGQNLHI------------  101 (192)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHhhcc--hh-----------HHHHHHHHHHHHccccHHHHHhhccCC------------
Confidence            45678899999999998887653321  11           467889999999999999999643211            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH----HHHHhcCCCcccccccCCCccccCCCCCcHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV----QLLLDLHANVSAVTFHYGTSMDLIGAGSTPL  201 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v----~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpL  201 (489)
                                                .+-.+-+-.|....+.++.    .+++++...-...|..     .+   -.--|
T Consensus       102 --------------------------~~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~-----~l---l~~hl  147 (192)
T PF03158_consen  102 --------------------------YNPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPT-----SL---LTQHL  147 (192)
T ss_pred             --------------------------CCchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHH-----HH---HHHHH
Confidence                                      1112234445555554431    2233332111000000     00   11357


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcC
Q 011309          202 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP  251 (489)
Q Consensus       202 h~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~  251 (489)
                      ..|+..|-+.-|...|++|.+++.      +.|..|+++++..|..++..
T Consensus       148 ~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  148 EKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            788888888888888888888764      68888888888888777653

These proteins may be involved in promoting survival of infected macrophages [].

>smart00184 RING Ring finger

Probab=94.90  E-value=0.02  Score=37.87  Aligned_cols=29  Identities=28%  Similarity=0.647  Sum_probs=24.2

Q ss_pred             hhhhhhhcccccccCCcchhhhhHHHHhh
Q 011309          296 CAVCLERACTVAAEGCRHELCVRCALYLC  324 (489)
Q Consensus       296 C~iCle~~~~v~~~~C~H~~C~~C~~~lC  324 (489)
                      |.+|++........+|+|.+|..|....-
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~   29 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWL   29 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHH
Confidence            56788887788889999999999987764

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.67  E-value=0.53  Score=43.39  Aligned_cols=139  Identities=14%  Similarity=0.062  Sum_probs=94.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHH
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTAL   92 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpL   92 (489)
                      -|..|++.+-+.+++.+-+...+-     ....++.+-.|++..+.|+|+|+-+.   +...            +-.+-.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~~~-----~~~~q~LFElAC~~qkydiV~WI~qn---L~i~------------~~~~iF  108 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLENE-----RYLNQELFELACEEQKYDIVKWIGQN---LHIY------------NPEDIF  108 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhhcc-----hhHHHHHHHHHHHHccccHHHHHhhc---cCCC------------Cchhhh
Confidence            478899999999998887754321     11227899999999999999999443   3222            224567


Q ss_pred             HHHHHcCCHHHHH----HHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           93 HFAAVNGHVRCIR----LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        93 h~Aa~~g~~~~vk----~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      -.|......+...    +++......               .         ......++       ..-|.+|+..|...
T Consensus       109 dIA~~~kDlsLyslGY~l~~~~~~~~---------------~---------~~d~~~ll-------~~hl~~a~~kgll~  157 (192)
T PF03158_consen  109 DIAFAKKDLSLYSLGYKLLFNRMMSE---------------H---------NEDPTSLL-------TQHLEKAAAKGLLP  157 (192)
T ss_pred             hhhhhccchhHHHHHHHHHHhhcccc---------------c---------ccCHHHHH-------HHHHHHHHHCCCHH
Confidence            7888888776521    122111100               0         00000001       12478999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  218 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~  218 (489)
                      .|...+++|.+++.                ++|..|+..++-.++.+++.
T Consensus       158 F~letlkygg~~~~----------------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  158 FVLETLKYGGNVDI----------------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHHcCCcccH----------------HHHHHHHHhhHHHHHHHhhc
Confidence            99999999988753                69999999999999998874

These proteins may be involved in promoting survival of infected macrophages [].

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.53  E-value=0.022  Score=44.77  Aligned_cols=43  Identities=37%  Similarity=0.838  Sum_probs=31.3

Q ss_pred             Ccchhhhhhhhc-------------ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcc
Q 011309          292 DADTCAVCLERA-------------CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  346 (489)
Q Consensus       292 ~~~~C~iCle~~-------------~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR  346 (489)
                      ..+.|.||++..             |.+...+|+|.|-..|+...-...+            .||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~------------~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNN------------TCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSS------------B-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCC------------cCCCCC
Confidence            345699998876             6677788999999999987753222            599998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.17  E-value=0.017  Score=54.80  Aligned_cols=45  Identities=38%  Similarity=0.688  Sum_probs=34.5

Q ss_pred             hhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          296 CAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       296 C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      |..|.++..+|.+.||+|       +.+|..+..+        ...||+|+..+.+++.+
T Consensus       161 Cr~C~~~~~~VlllPCrH-------l~lC~~C~~~--------~~~CPiC~~~~~s~~~v  205 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRH-------LCLCGICDES--------LRICPICRSPKTSSVEV  205 (207)
T ss_pred             ceecCcCCceEEeecccc-------eEeccccccc--------CccCCCCcChhhceeec
Confidence            999999999999999999       4455444321        12399999999888743

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=93.17  E-value=0.066  Score=53.40  Aligned_cols=48  Identities=27%  Similarity=0.596  Sum_probs=32.8

Q ss_pred             cchhhhhhhhc---cc--ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          293 ADTCAVCLERA---CT--VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       293 ~~~C~iCle~~---~~--v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ...|.+|....   .+  ..+.+|||.||-.|.-.+-..           ++.+||.|+..+..
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-----------~~~~CP~C~~~lrk   55 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----------GSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-----------CCCCCCCCCCccch
Confidence            35788998742   22  133389999999999887311           22369999987765

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.88  E-value=0.069  Score=52.76  Aligned_cols=46  Identities=30%  Similarity=0.718  Sum_probs=38.4

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccc
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  347 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~  347 (489)
                      ..+.-.|.||++..-.....+|+|.+|..|+-..-.            ....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~------------~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE------------GPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccchHhHHHHHHhcC------------CCcCCcccCC
Confidence            346678999999998889999999999999987753            2367999994

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=92.81  E-value=0.056  Score=37.79  Aligned_cols=31  Identities=29%  Similarity=0.638  Sum_probs=19.5

Q ss_pred             hhhhhhhccc----ccccCCcchhhhhHHHHhhhcC
Q 011309          296 CAVCLERACT----VAAEGCRHELCVRCALYLCSTN  327 (489)
Q Consensus       296 C~iCle~~~~----v~~~~C~H~~C~~C~~~lC~~~  327 (489)
                      |.||.| ..+    ....+|||.+|-.|.-.+-...
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcC
Confidence            678888 666    5667899999999999997654

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=92.70  E-value=0.077  Score=51.64  Aligned_cols=54  Identities=26%  Similarity=0.531  Sum_probs=38.3

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      .....|.||-++.-.....+|||.||.-|+-..-     .       ...-||+||..- .++.|++
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL-----~-------~qp~CP~Cr~~~-~esrlr~   76 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHTFCSLCIRRHL-----G-------TQPFCPVCREDP-CESRLRG   76 (391)
T ss_pred             hhHHHhhhhhheeecceecccccchhHHHHHHHh-----c-------CCCCCccccccH-Hhhhccc
Confidence            4467899999999888999999999766664331     1       122499999753 3455555

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=90.95  E-value=0.95  Score=43.08  Aligned_cols=92  Identities=15%  Similarity=0.074  Sum_probs=66.0

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcC----CCCcccCCCCCCchHHHHHHH--hCcHHHHHHHHHcC-CCCCCcCCCCCccccc
Q 011309           12 ERLVSAARDGDFVEAKMLLDCN----PCLAKYSTFGGLNSPLHFAAA--KGHNEIVALLLENG-ADVNSRNYCGQVTRAD   84 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g----~~l~~~~~~~~g~TpLh~Aa~--~G~~eivk~LLe~G-ad~n~~d~~g~i~~~d   84 (489)
                      ++|..|+..+..+++.+||.+-    .++......   .--+-++..  .-+..|++++|++| +++|..-...      
T Consensus       181 ~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~---~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~------  251 (284)
T PF06128_consen  181 QAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKE---LYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKV------  251 (284)
T ss_pred             HHHHHHhcccHHHHHHHHHhhcceecchhhhcCcc---hhhHHHHHhhcCCcHHHHHHHHhccccccchhhhcc------
Confidence            5788899999999999999752    222211111   223445444  34578999999998 7887654322      


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHccCC
Q 011309           85 YLSGRTALHFAAVNGHVRCIRLVVADFVP  113 (489)
Q Consensus        85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~  113 (489)
                       ..|.|-|.-|+.+++.+++.+||..|+.
T Consensus       252 -NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  252 -NSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             -CCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence             2899999999999999999999988763

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=90.54  E-value=0.27  Score=44.03  Aligned_cols=36  Identities=25%  Similarity=0.492  Sum_probs=27.8

Q ss_pred             CCCCCCcccccccceecCC--CCccccCCCcccccCCC
Q 011309          339 SIPCPLCRHGIVSFTKLPG--SPVKDIKQPLSLGLCTP  374 (489)
Q Consensus       339 ~~~CP~CR~~I~~~~~~~~--~~~~~~~~~~~~~~~~~  374 (489)
                      ...||+||..|.+|+++.+  .-+-+++|+-+.--|.|
T Consensus        80 ~L~CPLCRG~V~GWtvve~AR~~LN~K~RsC~~e~C~F  117 (162)
T PF07800_consen   80 ELACPLCRGEVKGWTVVEPARRFLNAKKRSCSQESCSF  117 (162)
T ss_pred             cccCccccCceeceEEchHHHHHhccCCccCccccccc
Confidence            5789999999999988866  34457777877776643

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.41  E-value=0.16  Score=49.93  Aligned_cols=58  Identities=21%  Similarity=0.454  Sum_probs=39.1

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCC
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  358 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~  358 (489)
                      ......|.+|+-..--..-.+|+|+||.-|+     ..  ++. .   ....|++||.+|.+-+-+-++
T Consensus         4 ~~~~~eC~IC~nt~n~Pv~l~C~HkFCyiCi-----KG--sy~-n---dk~~CavCR~pids~i~~~ps   61 (324)
T KOG0824|consen    4 RTKKKECLICYNTGNCPVNLYCFHKFCYICI-----KG--SYK-N---DKKTCAVCRFPIDSTIDFEPS   61 (324)
T ss_pred             cccCCcceeeeccCCcCccccccchhhhhhh-----cc--hhh-c---CCCCCceecCCCCcchhcchh
Confidence            3455789999877755688999999965554     22  111 1   122499999999987655444

>smart00504 Ubox Modified RING finger domain

Probab=90.01  E-value=0.13  Score=38.63  Aligned_cols=45  Identities=11%  Similarity=0.025  Sum_probs=35.9

Q ss_pred             hhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          295 TCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       295 ~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .|.+|++-.-+....+|||-+|-.|+...-..            ...||+|+..+..
T Consensus         3 ~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~------------~~~cP~~~~~~~~   47 (63)
T smart00504        3 LCPISLEVMKDPVILPSGQTYERRAIEKWLLS------------HGTDPVTGQPLTH   47 (63)
T ss_pred             CCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH------------CCCCCCCcCCCCh
Confidence            57888888888888899999999999988633            1259999988743

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=89.60  E-value=0.24  Score=49.37  Aligned_cols=47  Identities=26%  Similarity=0.582  Sum_probs=35.2

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      .+.-.|.||+|-.-.....+|+|.||.-|+-..-     .+       .+.||.|+-.+
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L-----~~-------~p~CP~C~~~~   67 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFL-----SY-------KPQCPTCCVTV   67 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccchHHHHHHHHHh-----cc-------CCCCCceeccc
Confidence            3446799999999888999999999887775543     11       12499998654

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.36  E-value=1.4  Score=34.61  Aligned_cols=50  Identities=30%  Similarity=0.342  Sum_probs=41.9

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHc
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN   67 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~   67 (489)
                      -+.+-|..|+..|+.++++.+++.+. .+        ...|..|+..-+.+++++|+++
T Consensus         5 It~~tl~~Ai~GGN~eII~~c~~~~~-~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    5 ITKKTLEYAIIGGNFEIINICLKKNK-PD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             cCHHHHHHHHhCCCHHHHHHHHHHhc-cH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            34567999999999999999997551 11        3579999999999999999996

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=88.10  E-value=0.89  Score=35.76  Aligned_cols=49  Identities=16%  Similarity=0.357  Sum_probs=41.3

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHcc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF  111 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~  111 (489)
                      ..-|..|+..|+.||++.+++.+ .++                ...|..|+...+.+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~----------------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KPD----------------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-ccH----------------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            45789999999999999999865 222                35799999999999999999763

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.59  E-value=0.39  Score=48.99  Aligned_cols=55  Identities=24%  Similarity=0.602  Sum_probs=38.8

Q ss_pred             CCcchhhhhhhhccccc-----c---cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          291 DDADTCAVCLERACTVA-----A---EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~-----~---~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      .....|.||+|..-...     .   .+|.|-+|..|+...=+....     ...-+..||+||..+.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~-----~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQF-----ESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhcc-----ccccccCCCcccCccc
Confidence            55688999999876655     4   789999999999887432211     1222456999996554

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.12  E-value=0.26  Score=50.07  Aligned_cols=47  Identities=32%  Similarity=0.673  Sum_probs=32.6

Q ss_pred             chhhhhhhhcc---cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          294 DTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       294 ~~C~iCle~~~---~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      +.|+||||...   .+...||.|.+=..|+-.+=...           ...||+|++.|-.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-----------r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-----------RTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-----------CccCCCCCCcCCC
Confidence            69999999865   46889999998555554442111           1249999995543

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.38  E-value=0.42  Score=49.70  Aligned_cols=51  Identities=25%  Similarity=0.625  Sum_probs=38.8

Q ss_pred             CcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccccee
Q 011309          292 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTK  354 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~  354 (489)
                      ..-.|.+|+...=.....+|||.+|..|... |..           ....||.||.++.++..
T Consensus        83 sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r-~ld-----------~~~~cp~Cr~~l~e~~~  133 (398)
T KOG4159|consen   83 SEFECCVCSRALYPPVVTPCGHSFCLECLDR-SLD-----------QETECPLCRDELVELPA  133 (398)
T ss_pred             chhhhhhhHhhcCCCccccccccccHHHHHH-Hhc-----------cCCCCcccccccccchH
Confidence            3456889988888888889999999999766 322           12249999999987543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=83.17  E-value=0.63  Score=47.06  Aligned_cols=50  Identities=22%  Similarity=0.617  Sum_probs=35.5

Q ss_pred             CCCcchhhhhhhhc-cc------------ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERA-CT------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~-~~------------v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.+|.|.. -.            ..-.||||-+=..|.-.+|-+.            -.||+||.+++-
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERq------------QTCPICr~p~if  346 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQ------------QTCPICRRPVIF  346 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhc------------cCCCcccCcccc
Confidence            46678899999983 22            2678999977666776776333            239999999543

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.61  E-value=0.59  Score=51.14  Aligned_cols=44  Identities=25%  Similarity=0.572  Sum_probs=38.1

Q ss_pred             Ccchhhhhhhhccc-----ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccc
Q 011309          292 DADTCAVCLERACT-----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRH  347 (489)
Q Consensus       292 ~~~~C~iCle~~~~-----v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~  347 (489)
                      ..+.|.||.|..-+     ....+|+|.++..|...+.-..            -.||+||.
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~------------qtCP~CR~  338 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQ------------QTCPTCRT  338 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHh------------CcCCcchh
Confidence            46889999999988     7999999999999999997552            24999998

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.48  E-value=0.82  Score=45.08  Aligned_cols=46  Identities=28%  Similarity=0.580  Sum_probs=34.4

Q ss_pred             cchhhhhhhhc---ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          293 ADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       293 ~~~C~iCle~~---~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      ...|++|++..   -.+.+.||.|+|=+.|.-.+=-..           +.+||+||..|
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y-----------~~~CPvCrt~i  371 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGY-----------SNKCPVCRTAI  371 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhh-----------cccCCccCCCC
Confidence            36799998765   336889999999888887774311           23599999876

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.26  E-value=0.75  Score=46.34  Aligned_cols=57  Identities=30%  Similarity=0.593  Sum_probs=42.0

Q ss_pred             CCCcchhhhhhhhc-ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          290 SDDADTCAVCLERA-CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       290 ~~~~~~C~iCle~~-~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ......|.+||+-. -++-...|+|+||..|+..-=-.           +-..||-||...+|-.-|-.
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-----------gn~ecptcRk~l~SkrsLr~   97 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-----------GNNECPTCRKKLVSKRSLRI   97 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-----------cCCCCchHHhhccccccCCC
Confidence            45567899999875 45678899999999999875311           12349999999888765543

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=80.12  E-value=1.3  Score=49.89  Aligned_cols=51  Identities=24%  Similarity=0.587  Sum_probs=38.2

Q ss_pred             CCCcchhhhhhhhc-------ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          290 SDDADTCAVCLERA-------CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       290 ~~~~~~C~iCle~~-------~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      .+|.+.|.+|.--.       .+-...+|.|.+=++|..++-..+..          ..||+||+.|.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~----------s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSAR----------SNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCC----------CCCCccccccc
Confidence            57899999995332       34466789999999999998644422          34999998886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	489
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-17
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-15
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-15
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-04
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-14
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-14
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		1e-12
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-11
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-12
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		7e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		7e-12
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		5e-10
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-11
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		3e-07
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-11
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-11
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		5e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-11
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-10
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		7e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-11
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		8e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-10
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		1e-09
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		8e-10
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-10
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-07
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		2e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-10
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		4e-10
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		1e-08
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-10
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		7e-09
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-10
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-09
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-09
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		2e-06
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-08
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-06
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-08
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		2e-06
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		6e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		2e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		2e-07
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-07
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		2e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		7e-07
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-07
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		4e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-06
1uoh_A	226	Human Gankyrin Length = 226		7e-06
1uoh_A	226	Human Gankyrin Length = 226		2e-05
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		7e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		8e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		2e-05
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		9e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		1e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-05
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-05
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-05
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		3e-05
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		3e-05
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		3e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		4e-05
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		6e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		7e-05
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		8e-05
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-04
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		1e-04
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		8e-05
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		8e-05
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		9e-05
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		8e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-04
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		3e-04
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		3e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		3e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		8e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 85.5 bits (210), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 60/175 (34%), Positives = 85/175 (48%), Gaps = 53/175 (30%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           +PLH AA  GH E+V LLLE GADVN+++           +GRT LH AA NGH+  ++L
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKL 53
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
           +                          +++  D       VN     G T LH+AA NG+
Sbjct: 54  L--------------------------LEAGAD-------VNAKDKNGRTPLHLAARNGH 80
Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
            + V+LLL+  A+V+A   +          G TPLH AA  G+L+  ++LL  GA
Sbjct: 81  LEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGA 125

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 98/222 (44%), Gaps = 64/222 (28%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G+RL+ AA +G+    K L++    +    + G   +PLH+AA +GH EIV LL+  GAD
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHYAAKEGHKEIVKLLISKGAD 62
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+++            GRT LH+AA  GH   ++L+++                     
Sbjct: 63  VNAKDS----------DGRTPLHYAAKEGHKEIVKLLIS--------------------K 92
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
           G+ V +K                G T LH AA  G+ + V+LL+   A+V+       + 
Sbjct: 93  GADVNAKDSD-------------GRTPLHYAAKEGHKEIVKLLISKGADVNT------SD 133
Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
            D    G TPL  A   GN +  ++L  +G         GWL
Sbjct: 134 SD----GRTPLDLAREHGNEEIVKLLEKQG---------GWL 162

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 95/222 (42%), Gaps = 64/222 (28%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G+RL+ AA +G+    K L++    +    + G   +PLH AA  GH E+V LL+  GAD
Sbjct: 5   GKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGAD 62
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+++            GRT LH AA NGH   ++L+++                     
Sbjct: 63  VNAKDS----------DGRTPLHHAAENGHKEVVKLLIS--------------------K 92
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
           G+ V +K                G T LH AA NG+ + V+LL+   A+V+         
Sbjct: 93  GADVNAKDSD-------------GRTPLHHAAENGHKEVVKLLISKGADVNTSDS----- 134
Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
                 G TPL  A   GN +  ++L  +G         GWL
Sbjct: 135 -----DGRTPLDLAREHGNEEVVKLLEKQG---------GWL 162

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 50/111 (45%), Gaps = 18/111 (16%)
Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
           AA NG  D V+ L++  A+V+A              G TPLH AA  G+ +  ++L+S+G
Sbjct: 11  AAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISKG 60
Query: 221 ASRMSLNCNGWLPLDVARMWGRHWLEPLL--------APSSDAVMPRFHPS 263
           A   + + +G  PL  A   G   +  LL        A  SD   P  H +
Sbjct: 61  ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 53/198 (26%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
           AA  G+ + V  LLENGAD N+ +            GRT LH+AA NGH   ++L+++  
Sbjct: 11  AAENGNKDRVKDLLENGADPNASDS----------DGRTPLHYAAENGHKEIVKLLLS-- 58
Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
                                      D +A      K +DG  T LH AA NG+ + V+
Sbjct: 59  ------------------------KGADPNA------KDSDG-RTPLHYAAENGHKEIVK 87
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
           LLL   A+ +A              G TPLH+AA  G+ +  ++LLS+GA   + + +G 
Sbjct: 88  LLLSKGADPNAKDS----------DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGR 137
Query: 232 LPLDVARMWGRHWLEPLL 249
            PLD+AR  G   +  LL
Sbjct: 138 TPLDLAREHGNEEIVKLL 155

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 91/198 (45%), Gaps = 53/198 (26%)
Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
           AA  G+ + V  LLENGADVN+ +            G+T LH AA NGH   ++L+++  
Sbjct: 11  AAENGNKDRVKDLLENGADVNASDS----------DGKTPLHLAAENGHKEVVKLLLS-- 58
Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
                                      D +A      K +DG  T LH+AA NG+ + V+
Sbjct: 59  ------------------------QGADPNA------KDSDG-KTPLHLAAENGHKEVVK 87
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
           LLL   A+ +A              G TPLH AA  G+ +  ++LLS+GA   + + +G 
Sbjct: 88  LLLSQGADPNAKDSD----------GKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGR 137
Query: 232 LPLDVARMWGRHWLEPLL 249
            PLD+AR  G   +  LL
Sbjct: 138 TPLDLAREHGNEEVVKLL 155

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 60/205 (29%), Positives = 90/205 (43%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AAA G ++ V +L+ NGADVN+ +           +G T LH AA NG +  +
Sbjct: 6   LGKKLLEAAAAGQDDEVRILMANGADVNATDD----------NGLTPLHLAAANGQLEIV 55
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                          K+  D       VN +   GIT LH+AA +
Sbjct: 56  EVLL--------------------------KNGAD-------VNASDSAGITPLHLAAYD 82
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A             AG TPLH AA  G L+  +VLL  GA   
Sbjct: 83  GHLEIVEVLLKHGADVNAYD----------RAGWTPLHLAALSGQLEIVEVLLKHGADVN 132
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G+  L  +L
Sbjct: 133 AQDALGLTAFDISINQGQEDLAEIL 157

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 65.5 bits (158), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   D G+T LH+AA NG  + V++LL   A+V+A             AG TPLH AA 
Sbjct: 32  VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASD----------SAGITPLHLAAY 81
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + +  GW PL +A + G+   +E LL   +D
Sbjct: 82  DGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 116/284 (40%), Gaps = 72/284 (25%)
Query: 17  AARDGDFVEAKMLLD--CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
           AAR G     K+LL+   NP LA  +T G  ++PLH AA +GH E V  LLE  A     
Sbjct: 87  AARIGHTNMVKLLLENNANPNLA--TTAG--HTPLHIAAREGHVETVLALLEKEAS---- 138
Query: 75  NYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA-DFVPS-------VPFEVMNTQIEG 126
             C  +T+     G T LH AA  G VR   L++  D  P+        P  V       
Sbjct: 139 QAC--MTK----KGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL 192
Query: 127 D-------RG--------DGSS---VKSKCDQSALSKFV-------NKAADGGITALHMA 161
           D       RG        +G +   + +K +Q  +++ +       N  +  G+T LH+A
Sbjct: 193 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252
Query: 162 ALNGYFDCVQLLLDLHAN----------------------VSAVTFHYGTSMDLIG-AGS 198
           A  G+ + V LLL   AN                      V+ V   +G  +D     G 
Sbjct: 253 AQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 312
Query: 199 TPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
           TPLH A+  GN+K  + LL   A   +    G+ PL  A   G 
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +           SG+T LH AA+ GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDD----------SGKTPLHLAAIKGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K   D +A  K        G T LH+AAL 
Sbjct: 64  EVL--------------------------LKHGADVNAADKM-------GDTPLHLAALY 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A   +          G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKNGADVNATDTY----------GFTPLHLAADAGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   D G T LH+AA+ G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAAD----------KMGDTPLHLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + +  G+ PL +A   G    +E LL   +D
Sbjct: 90  YGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +    T+G  ++PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDTYG--DTPLHLAARVGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+ ++          SG T LH AA  GH+  + ++                       
Sbjct: 73  VNALDF----------SGSTPLHLAAKRGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K   D +A           G T LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKYGADVNADDTI-------GSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G           T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAEDTYGD----------TPLHLAARVGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K+  D +AL  F       G T LH+AA  
Sbjct: 64  EVL--------------------------LKNGADVNALD-F------SGSTPLHLAAKR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A         D I  GSTPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKYGADVNA--------DDTI--GSTPLHLAADTGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LH+AA  G+ + V++LL   A+V+A+ F          +GSTPLH AA  G+L+  
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDF----------SGSTPLHLAAKRGHLEIV 96
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
           +VLL  GA   + +  G  PL +A   G    +E LL   +D
Sbjct: 97  EVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 43/132 (32%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           +PLH AA  GH E+V LLLE GADVN+++           +GRT LH AA NGH+  ++L
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKL 53
Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
           +                          +++  D       VN     G T LH+AA NG+
Sbjct: 54  L--------------------------LEAGAD-------VNAKDKNGRTPLHLAARNGH 80
Query: 167 FDCVQLLLDLHA 178
            + V+LLL+  A
Sbjct: 81  LEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 43/135 (31%)
Query: 87  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
           +GRT LH AA NGH+  ++L++                          ++  D       
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL--------------------------EAGAD------- 27
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA 
Sbjct: 28  VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  ++LL  GA
Sbjct: 78  NGHLEVVKLLLEAGA 92

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 10/84 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51
Query: 214 QVLLSRGASRMSLNCNGWLPLDVA 237
           ++LL  GA   + + NG  PL +A
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLA 75

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+        Y  +G   +PLH AAA GH EIV +LL NGAD
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADANAYDHYG--RTPLHMAAAVGHLEIVEVLLRNGAD 60
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+ +           +G T LH AA  GH+  + ++                       
Sbjct: 61  VNAVD----------TNGTTPLHLAASLGHLEIVEVL----------------------- 87
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K   D       VN     GIT L++AA  G+ + V++LL   A+V+A      T+
Sbjct: 88  ---LKYGAD-------VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKTA 137
Query: 191 MDL 193
            D+
Sbjct: 138 FDI 140

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/177 (28%), Positives = 75/177 (42%), Gaps = 53/177 (29%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGAD N+ ++           GRT LH AA  GH+  +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADANAYDH----------YGRTPLHMAAAVGHLEIV 51
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +++  D       VN     G T LH+AA  
Sbjct: 52  EVL--------------------------LRNGAD-------VNAVDTNGTTPLHLAASL 78
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           G+ + V++LL   A+V+A              G TPL+ AA  G+L+  +VLL  GA
Sbjct: 79  GHLEIVEVLLKYGADVNAKD----------ATGITPLYLAAYWGHLEIVEVLLKHGA 125

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/102 (38%), Positives = 55/102 (53%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LHMAA  G+ + V++LL   A+V+AV  +          G+TPLH AA  G+L+  
Sbjct: 35  GRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTN----------GTTPLHLAASLGHLEIV 84
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
           +VLL  GA   + +  G  PL +A  WG    +E LL   +D
Sbjct: 85  EVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD 126

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +  +   G  ++PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQG--STPLHLAAWIGHPEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+R+            G T LH AA NGH+  + ++                       
Sbjct: 73  VNARDT----------DGWTPLHLAADNGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K   D +A   +       G+T LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKYGADVNAQDAY-------GLTPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 80/193 (41%), Gaps = 53/193 (27%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +            G T LH AA  GH   +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAHDD----------QGSTPLHLAAWIGHPEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                          K   D       VN     G T LH+AA N
Sbjct: 64  EVLL--------------------------KHGAD-------VNARDTDGWTPLHLAADN 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A   +          G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKYGADVNAQDAY----------GLTPLHLAADRGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVA 237
           + +  G    D++
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 84/193 (43%), Gaps = 53/193 (27%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +           +G T LH AAV+GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILIANGADVNAVDN----------TGLTPLHLAAVSGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K   D  A   +       G T LH+AA+ 
Sbjct: 64  EVL--------------------------LKHGADVDAADVY-------GFTPLHLAAMT 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A              GSTPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKYGADVNAFDM----------TGSTPLHLAADEGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
           + +  G    D++
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   + G+T LH+AA++G+ + V++LL   A+V A   +          G TPLH AA 
Sbjct: 40  VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY----------GFTPLHLAAM 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + +  G  PL +A   G    +E LL   +D
Sbjct: 90  TGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD 138

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 46/192 (23%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAADVVGW--TPLHLAAYWGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+ +  G           T LH AA  GH+  + ++                       
Sbjct: 73  VNAYDTLGS----------TPLHLAAHFGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K+  D       VN   D GIT LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKNGAD-------VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTA 149
Query: 191 MDL-IGAGSTPL 201
            D+ I  G+  L
Sbjct: 150 FDISINNGNEDL 161

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 53/193 (27%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +  G           T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAADVVGW----------TPLHLAAYWGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                          K+  D +A           G T LH+AA  
Sbjct: 64  EVLL--------------------------KNGADVNAYDTL-------GSTPLHLAAHF 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A   +          G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKNGADVNAKDDN----------GITPLHLAANRGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
           + +  G    D++
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN A   G T LH+AA  G+ + V++LL   A+V+A    Y T       GSTPLH AA 
Sbjct: 40  VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA----YDT------LGSTPLHLAAH 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + + NG  PL +A   G    +E LL   +D
Sbjct: 90  FGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD 138

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 84/183 (45%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N        F G  +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNARDFTGW-TPLHLAAHFGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+++  G           T LH AA  GH+  + ++                       
Sbjct: 73  VNAKDSLGV----------TPLHLAARRGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K+  D       VN +   G T LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKNGAD-------VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 58/205 (28%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+R++ G           T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNARDFTGW----------TPLHLAAHFGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                     +G+ V +K                G+T LH+AA  
Sbjct: 64  EVLLK--------------------NGADVNAKDSL-------------GVTPLHLAARR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A   H          G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKNGADVNASDSH----------GFTPLHLAAKRGHLEIVEVLLKNGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 53/102 (51%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LH+AA  G+ + V++LL   A+V+A              G TPLH AA  G+L+  
Sbjct: 47  GWTPLHLAAHFGHLEIVEVLLKNGADVNAKD----------SLGVTPLHLAARRGHLEIV 96
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
           +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 97  EVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD 138

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 59/206 (28%), Positives = 87/206 (42%), Gaps = 55/206 (26%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA +GH EIV +LL+ GAD
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+++            G T LH AA  GH+  + ++                       
Sbjct: 61  VNAKDK----------DGYTPLHLAAREGHLEIVEVL----------------------- 87
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K+  D       VN     G T LH+AA  G+ + V++LL   A+V+A        
Sbjct: 88  ---LKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD------ 131
Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVL 216
                 G TP   A   GN    +VL
Sbjct: 132 ----KFGKTPFDLAIDNGNEDIAEVL 153

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 83/193 (43%), Gaps = 53/193 (27%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ ++ G           T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDWLGH----------TPLHLAAKTGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                          K   D +A   +       G T LH+AA N
Sbjct: 64  EVLL--------------------------KYGADVNAWDNY-------GATPLHLAADN 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A  +           G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKHGADVNAKDYE----------GFTPLHLAAYDGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
           + +  G    D++
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 54/102 (52%), Gaps = 11/102 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LH+AA  G+ + V++LL   A+V+A   +          G+TPLH AA  G+L+  
Sbjct: 47  GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNY----------GATPLHLAADNGHLEIV 96
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
           +VLL  GA   + +  G+ PL +A   G    +E LL   +D
Sbjct: 97  EVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD 138

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 85/183 (46%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      +   G  +PLH AA+ GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDNDGY-TPLHLAASNGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+ +          L+G T LH AA  GH+  + ++                       
Sbjct: 73  VNASD----------LTGITPLHLAAATGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K   D       VN   + G T LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKHGAD-------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 88/205 (42%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +            G T LH AA NGH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDN----------DGYTPLHLAASNGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K+  D       VN +   GIT LH+AA  
Sbjct: 64  EVL--------------------------LKNGAD-------VNASDLTGITPLHLAAAT 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A    Y         G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKHGADVNA----YDND------GHTPLHLAAKYGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   + G T LH+AA NG+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDL----------TGITPLHLAAA 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + + +G  PL +A  +G    +E LL   +D
Sbjct: 90  TGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD 138

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 82/193 (42%), Gaps = 53/193 (27%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ ++ G           T LH    NGH+  I
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNANDWFG----------ITPLHLVVNNGHLEII 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                          K   D       VN +   G T LH+AA  
Sbjct: 64  EVLL--------------------------KYAAD-------VNASDKSGWTPLHLAAYR 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A+ +           G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKYGADVNAMDYQ----------GYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 225 SLNCNGWLPLDVA 237
           + +  G    D++
Sbjct: 141 AQDKFGKTAFDIS 153

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 87/183 (47%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      +   GL +PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+ +          + G T LH AA+ GH+  + ++                       
Sbjct: 73  VNAID----------IXGSTPLHLAALIGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K   D +A+  +       G T LH+AA+ G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKHGADVNAVDTW-------GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +           SG T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDA----------SGLTPLHLAATYGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K   D +A+          G T LH+AAL 
Sbjct: 64  EVL--------------------------LKHGADVNAIDIX-------GSTPLHLAALI 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+AV             G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKHGADVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G+T LH+AA  G+ + V++LL   A+V+A+             GSTPLH AA 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------XGSTPLHLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   +++  G  PL +A + G    +E LL   +D
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G   +PLH AA +GH EIV +LL+ GAD
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+++            G T LH AA  GH+  + ++                       
Sbjct: 61  VNAKDK----------DGYTPLHLAAREGHLEIVEVL----------------------- 87
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K+  D       VN     G T LH+AA  G+ + V++LL   A+V+A      T 
Sbjct: 88  ---LKAGAD-------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTP 137
Query: 191 MDL 193
            DL
Sbjct: 138 FDL 140

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 57/193 (29%), Positives = 83/193 (43%), Gaps = 53/193 (27%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+++            G T LH AA  GH+  +
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGADVNAKDK----------DGYTPLHLAAREGHLEIV 51
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++                          K+  D       VN     G T LH+AA  
Sbjct: 52  EVLL--------------------------KAGAD-------VNAKDKDGYTPLHLAARE 78
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A         D    G TPLH AA  G+L+  +VLL  GA   
Sbjct: 79  GHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAREGHLEIVEVLLKAGADVN 128
Query: 225 SLNCNGWLPLDVA 237
           + +  G  P D+A
Sbjct: 129 AQDKFGKTPFDLA 141

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G T LH+AA  G+ + V++LL   A+V+A         D    G TPLH AA 
Sbjct: 28  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA------KDKD----GYTPLHLAAR 77
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 78  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 126

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 83/183 (45%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N          G  +PLH AA +GH EIV +LL+ GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAKDKDGY-TPLHLAAREGHLEIVEVLLKAGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+++            G T LH AA  GH+  + ++                       
Sbjct: 73  VNAKDK----------DGYTPLHLAAREGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K+  D +A  K        G T LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKAGADVNAKDK-------DGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+++            G T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNAKDK----------DGYTPLHLAAREGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K+  D +A  K        G T LH+AA  
Sbjct: 64  EVL--------------------------LKAGADVNAKDK-------DGYTPLHLAARE 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A              G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKAGADVNAKDKD----------GYTPLHLAAREGHLEIVEVLLKAGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKD----------GYTPLHLAAR 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + + +G+ PL +A   G    +E LL   +D
Sbjct: 90  EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 86/183 (46%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      +   GL +PLH AA  GH EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNATDASGL-TPLHLAATYGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN+ +  G           T LH AA+ GH+  + ++                       
Sbjct: 73  VNAIDIMGS----------TPLHLAALIGHLEIVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K   D +A+  +       G T LH+AA+ G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKHGADVNAVDTW-------GDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 87/205 (42%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +           SG T LH AA  GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNATDA----------SGLTPLHLAATYGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K   D +A+          G T LH+AAL 
Sbjct: 64  EVL--------------------------LKHGADVNAIDIM-------GSTPLHLAALI 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+AV             G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKHGADVNAVDT----------WGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G+T LH+AA  G+ + V++LL   A+V+A+             GSTPLH AA 
Sbjct: 40  VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDI----------MGSTPLHLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   +++  G  PL +A + G    +E LL   +D
Sbjct: 90  IGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD 138

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 89/205 (43%), Gaps = 53/205 (25%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGADVN+ +           SG T LH AA NGH+  +
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNAEDA----------SGWTPLHLAAFNGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K+  D       VN     G+T L +AAL 
Sbjct: 64  EVL--------------------------LKNGAD-------VNAVDHAGMTPLRLAALF 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V++LL   A+V+A        M+    G TPLH AA  G+L+  +VLL  GA   
Sbjct: 91  GHLEIVEVLLKNGADVNA------NDME----GHTPLHLAAMFGHLEIVEVLLKNGADVN 140
Query: 225 SLNCNGWLPLDVARMWGRHWLEPLL 249
           + +  G    D++   G   L  +L
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEIL 165

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G T LH+AA NG+ + V++LL   A+V+AV            AG TPL  AA 
Sbjct: 40  VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAAL 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + +  G  PL +A M+G    +E LL   +D
Sbjct: 90  FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD 138

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN A + G T LH+AA +G+ + V++LL   A+V A              G TPLH AA 
Sbjct: 40  VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF----------GYTPLHLAAY 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   +++ +G  PL +A  WG    +E LL   +D
Sbjct: 90  WGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD 138

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 82/183 (44%), Gaps = 45/183 (24%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N      S   G  +PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNASDHVGW-TPLHLAAYFGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN          AD   G T LH AA  GH+  + ++                       
Sbjct: 73  VN----------ADDSLGVTPLHLAADRGHLEVVEVL----------------------- 99
Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              +K+  D       VN     G T LH+AA  G+ + V++LL   A+V+A      T+
Sbjct: 100 ---LKNGAD-------VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 191 MDL 193
            D+
Sbjct: 150 FDI 152

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN +   G T LH+AA  G+ + V++LL   A+V+A       S+     G TPLH AA 
Sbjct: 40  VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA-----DDSL-----GVTPLHLAAD 89
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR-HWLEPLLAPSSD 254
            G+L+  +VLL  GA   + + NG+ PL +A   G    +E LL   +D
Sbjct: 90  RGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD 138

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/108 (37%), Positives = 53/108 (49%), Gaps = 12/108 (11%)
Query: 2   GNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIV 61
           G+ +G       L +AA++G   E K LL     +   S  G  N+PLH AA  GH EIV
Sbjct: 1   GHMWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIV 58
Query: 62  ALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA 109
            LLL  GADVN+R+            G T  H A  NGH   ++L+ A
Sbjct: 59  KLLLAKGADVNARSK----------DGNTPEHLAKKNGHHEIVKLLDA 96

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LH AA NG+ + V+ LL   A+V+A       S D    G+TPLH AA  G+ +  
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNA------RSKD----GNTPLHLAAKNGHAEIV 58
Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           ++LL++GA   + + +G  P  +A+  G H +  LL
Sbjct: 59  KLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ A R G   E ++L+     +      G   +PLH AA +GH EIV +LL++GAD
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+R+          + GRT LH AA  GH+  + +++
Sbjct: 73  VNARD----------IWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIW----------GRTPLHLAAT 89
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ A R G   E ++L+     +      G   +PLH AA +GH EIV +LL++GAD
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+ +          + GRT LH AA  GH+  + +++
Sbjct: 73  VNASD----------IWGRTPLHLAATVGHLEIVEVLL 100

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW----------GRTPLHLAAT 89
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ A R G   E ++L+     +      G   +PLH AA +GH EIV +LL++GAD
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAG--VTPLHLAAKRGHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+ +            GRT LH AA  GH+  + +++
Sbjct: 73  VNASDSW----------GRTPLHLAATVGHLEIVEVLL 100

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   D G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD----------SWGRTPLHLAAT 89
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  +VLL  GA
Sbjct: 90  VGHLEIVEVLLEYGA 104

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E + +L  N      + + G ++PLH AA  GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVR-ILTANGADVNANDYWG-HTPLHLAAMLGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+             +GRT LH AA   H+  + +++
Sbjct: 73  VNATGN----------TGRTPLHLAAWADHLEIVEVLL 100

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 43/149 (28%)
Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L  NGADVN+ +Y G           T LH AA+ GH+  +
Sbjct: 14  LGKKLLEAARAGQDDEVRILTANGADVNANDYWGH----------TPLHLAAMLGHLEIV 63
Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            ++                          +K+  D       VN   + G T LH+AA  
Sbjct: 64  EVL--------------------------LKNGAD-------VNATGNTGRTPLHLAAWA 90
Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
            + + V++LL   A+V+A      T+ D+
Sbjct: 91  DHLEIVEVLLKHGADVNAQDKFGKTAFDI 119

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 108/246 (43%), Gaps = 31/246 (12%)
Query: 10  SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
            G   ++A   GD  E   LL+    +  Y+   GL + LH A    + ++V  L+ENGA
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGL-TALHQACIDDNVDMVKFLVENGA 97
Query: 70  DVNSRNY-----------CGQVTRADYLSGRTALHFAAVNGHVRC-IRLVVADFVPSVPF 117
           ++N  +            CG +  A+YL  + A H  AVN      + +   + +  +  
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGA-HVGAVNSEGDTPLDIAEEEAMEELLQ 156
Query: 118 EVMNTQ---IEGDRGDGSSVKSKCDQSAL-SKFVN--KAADGGITALHMAALNGYFDCVQ 171
             +N Q   IE  R +   +  +  +  L S  +N  + A  G TALH+AA  GY + ++
Sbjct: 157 NEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLK 216
Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
           LL+    +V+   +           G TPLH AA  G  + C++L+       ++N  G 
Sbjct: 217 LLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQ 266
Query: 232 LPLDVA 237
              DVA
Sbjct: 267 TAFDVA 272

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/98 (34%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +      G  N+PLH AA   H EIV +LL++GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKG--NTPLHLAADYDHLEIVEVLLKHGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+ +            G T LH AA+ GH+  + +++
Sbjct: 73  VNAHDN----------DGSTPLHLAALFGHLEIVEVLL 100

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 12/92 (13%)
Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A + G F   K LLD N    K    G  N+PL +A + GH+E+VALLL++GA +N+ N 
Sbjct: 126 ACQQGHFQVVKCLLDSNAKPNKKDLSG--NTPLIYACSGGHHELVALLLQHGASINASNN 183
Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
                      G TALH A +  HV  + L++
Sbjct: 184 ----------KGNTALHEAVIEKHVFVVELLL 205

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 14/149 (9%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           +SPLH AA  G  +++ LLL++GA+  +RN    V           LH A   GH + ++
Sbjct: 87  SSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP----------LHLACQQGHFQVVK 136
Query: 106 -LVVADFVPSVPFEVMNT-QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
            L+ ++  P+      NT  I    G    + +   Q   S  +N + + G TALH A +
Sbjct: 137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS--INASNNKGNTALHEAVI 194
Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMD 192
             +   V+LLL   A+V  +     T++D
Sbjct: 195 EKHVFVVELLLLHGASVQVLNKRQRTAVD 223

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N          GL +PLH AA  GH EIV +LL+ GAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNALDEDGL-TPLHLAAQLGHLEIVEVLLKYGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+ +  G           T LH AA+ GH+  + +++
Sbjct: 73  VNAEDNFGI----------TPLHLAAIRGHLEIVEVLL 100

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   + G+T LH+AA  G+ + V++LL   A+V+A              G TPLH AA 
Sbjct: 40  VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED----------NFGITPLHLAAI 89
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  +VLL  GA
Sbjct: 90  RGHLEIVEVLLKHGA 104

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/98 (35%), Positives = 53/98 (54%), Gaps = 12/98 (12%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+  N          GL +PLH AA   H EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILM-ANGADVNAEDKVGL-TPLHLAAMNDHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           VN+ +  G+          T LH  A+ GH+  + +++
Sbjct: 73  VNAIDAIGE----------TPLHLVAMYGHLEIVEVLL 100

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN     G+T LH+AA+N + + V++LL   A+V+A+        D I  G TPLH  A 
Sbjct: 40  VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI--------DAI--GETPLHLVAM 89
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  +VLL  GA
Sbjct: 90  YGHLEIVEVLLKHGA 104

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 11  GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           G++L+ AAR G   E ++L+     +     +G   +PL+ A A GH EIV +LL+NGAD
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDEYG--LTPLYLATAHGHLEIVEVLLKNGAD 72
Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
           VN+ +            G T LH AA  GH+
Sbjct: 73  VNAVDAI----------GFTPLHLAAFIGHL 93

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           VN   + G+T L++A  +G+ + V++LL   A+V+AV        D IG   TPLH AA 
Sbjct: 40  VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--------DAIGF--TPLHLAAF 89
Query: 207 GGNLKCCQVLLSRGA 221
            G+L+  +VLL  GA
Sbjct: 90  IGHLEIAEVLLKHGA 104

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/69 (42%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
          G++L+ AAR G   E ++L+     +A     G  ++PLH AA  GH E+V LLLE GAD
Sbjct: 7  GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 64
Query: 71 VNSRNYCGQ 79
          VN+++  G+
Sbjct: 65 VNAQDKFGK 73

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/230 (25%), Positives = 88/230 (38%), Gaps = 50/230 (21%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTR--------------ADYL------ 86
           SPLH AA  GH +I  +L++ GA++++   C +  R                YL      
Sbjct: 13  SPLHAAAEAGHVDICHMLVQAGANIDT---CSEDQRTPLMEAAENNHLEAVKYLIKAGAL 69
Query: 87  ------SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ 140
                  G T LH AA  GH   ++ ++++    V     N Q +G              
Sbjct: 70  VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV-----NCQDDGGWTPMIWATEYKHV 124
Query: 141 SALSKFVNKAADGGITA------LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI 194
             +   ++K +D  I        LH AA +G  D  ++LL    ++ AV  H        
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIH-------- 176
Query: 195 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
             G +PLH AA      C  + LSR +     N  G  PL  A +  + W
Sbjct: 177 --GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW 224

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 57/207 (27%), Positives = 82/207 (39%), Gaps = 54/207 (26%)
Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAK 55
           MG S G S +  +L+ AA+ GD    K L     ++C     + ST      PLHFAA  
Sbjct: 3   MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGY 56
Query: 56  GHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV 115
               +V  LL++GADV++++  G V           LH A   GH     L+V       
Sbjct: 57  NRVSVVEYLLQHGADVHAKDKGGLVP----------LHNACSYGHYEVAELLVKHGA--- 103
Query: 116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
              V+N                   + L KF         T LH AA  G ++  +LLL 
Sbjct: 104 ---VVNV------------------ADLWKF---------TPLHEAAAKGKYEICKLLLQ 133
Query: 176 LHANVSAVTFHYGTSMDLIGAGSTPLH 202
             A+ +       T +DL+  G T + 
Sbjct: 134 HGADPTKKNRDGNTPLDLVKDGDTDIQ 160

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           +AL +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + 
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEA 120
Query: 216 LLSRGASRMSLNCNGWLPLDVA 237
           LL+RGA   +   +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 46/82 (56%), Gaps = 10/82 (12%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           +AL +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + 
Sbjct: 71  SALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVHGNHVKCVEA 120
Query: 216 LLSRGASRMSLNCNGWLPLDVA 237
           LL+RGA   +   +G+ P+D+A
Sbjct: 121 LLARGADLTTEADSGYTPMDLA 142

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
          G++L+ AAR G   E ++L+     +A     G  ++PLH AA  GH E+V LLLE GAD
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGAD 82
Query: 71 VNSRNYCGQ 79
          V +++  G+
Sbjct: 83 VXAQDKFGK 91

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 57/194 (29%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
           SPLH AA+ G +EIV  LL  GA VN+ N           +G T LH+AA  N H   + 
Sbjct: 75  SPLHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCTPLHYAASKNRHEIAVM 124
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L                 +EG    G++  +K    A             TA+H AA  G
Sbjct: 125 L-----------------LEG----GANPDAKDHYEA-------------TAMHRAAAKG 150
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRM 224
               + +LL           +Y  S ++    G+TPLH A     ++  ++L+S+GAS  
Sbjct: 151 NLKMIHILL-----------YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 199
Query: 225 SLNCNGWLPLDVAR 238
             N     PL VA+
Sbjct: 200 IENKEEKTPLQVAK 213

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L+V +   S   E +   I  D+    S+ ++ DQ +             TALH A   G
Sbjct: 8   LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 51
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
           + + V+ LL L   V+          D   AG +PLH AA  G  +  + LL +GA   +
Sbjct: 52  HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 226 LNCNGWLPLDVARMWGRHWLEPLL 249
           +N NG  PL  A    RH +  +L
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVML 125

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 52/180 (28%), Positives = 81/180 (45%), Gaps = 44/180 (24%)
Query: 47  SPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           SPL  AA +   + ++ LL+  G +V+ R   G+          TALH AA+  ++    
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGE----------TALHIAALYDNLEA-A 53
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           +V+ +  P + FE M +++                             G TALH+A +N 
Sbjct: 54  MVLMEAAPELVFEPMTSELYE---------------------------GQTALHIAVINQ 86
Query: 166 YFDCVQLLLDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
             + V+ LL   A+VSA      FHY    +LI  G  PL FAAC G+ +  ++L+  GA
Sbjct: 87  NVNLVRALLARGASVSARATGSVFHY-RPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGA 145

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 81/194 (41%), Gaps = 57/194 (29%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
           SPLH AA+ G +EIV  LL  GA VN+ N           +G T LH+AA  N H   + 
Sbjct: 76  SPLHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCTPLHYAASKNRHEIAVM 125
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L                 +EG    G++  +K    A             TA+H AA  G
Sbjct: 126 L-----------------LEG----GANPDAKDHYEA-------------TAMHRAAAKG 151
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRM 224
               + +LL           +Y  S ++    G+TPLH A     ++  ++L+S+GAS  
Sbjct: 152 NLKMIHILL-----------YYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIY 200
Query: 225 SLNCNGWLPLDVAR 238
             N     PL VA+
Sbjct: 201 IENKEEKTPLQVAK 214

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 26/144 (18%)
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L+V +   S   E +   I  D+    S+ ++ DQ +             TALH A   G
Sbjct: 9   LMVCNLAYSGKLEELKESILADK----SLATRTDQDSR------------TALHWACSAG 52
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
           + + V+ LL L   V+          D   AG +PLH AA  G  +  + LL +GA   +
Sbjct: 53  HTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 226 LNCNGWLPLDVARMWGRHWLEPLL 249
           +N NG  PL  A    RH +  +L
Sbjct: 103 VNQNGCTPLHYAASKNRHEIAVML 126

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           +N    G  T LH+AA +G+ D VQ LL   A+++AV  H          G+ PLH+A  
Sbjct: 65  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 114
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
            G  +  + L++ GA     N  G +P+D A+
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           +N    G  T LH+AA +G+ D VQ LL   A+++AV  H          G+ PLH+A  
Sbjct: 60  INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACF 109
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
            G  +  + L++ GA     N  G +P+D A+
Sbjct: 110 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 141

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 76/193 (39%), Gaps = 55/193 (28%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
           SPLH AA+ G +EIV  LL  GA VN+ N           +G T LH+AA  N H   + 
Sbjct: 75  SPLHIAASAGRDEIVKALLVKGAHVNAVNQ----------NGCTPLHYAASKNRHEIAVM 124
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L                 +EG  G     K   D                TA+H AA  G
Sbjct: 125 L-----------------LEG--GANPDAKDHYDA---------------TAMHRAAAKG 150
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
               V +LL          F+  ++      G+TPLH A     ++  + L+++GAS   
Sbjct: 151 NLKMVHILL----------FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 226 LNCNGWLPLDVAR 238
            N     PL VA+
Sbjct: 201 ENKEEKTPLQVAK 213

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           TALH A   G+ + V+ LL L   V+          D   AG +PLH AA  G  +  + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGRDEIVKA 91
Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 76/193 (39%), Gaps = 55/193 (28%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA-VNGHVRCIR 105
           SPLH AA+ G +EIV  LL  GA VN+ N           +G T LH+AA  N H   + 
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAHVNAVNQ----------NGCTPLHYAASKNRHEIAVM 124
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L                 +EG  G     K   D                TA+H AA  G
Sbjct: 125 L-----------------LEG--GANPDAKDHYDA---------------TAMHRAAAKG 150
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
               V +LL          F+  ++      G+TPLH A     ++  + L+++GAS   
Sbjct: 151 NLKMVHILL----------FYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 226 LNCNGWLPLDVAR 238
            N     PL VA+
Sbjct: 201 ENKEEKTPLQVAK 213

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 10/94 (10%)
Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           TALH A   G+ + V+ LL L   V+          D   AG +PLH AA  G  +  + 
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVN----------DKDDAGWSPLHIAASAGXDEIVKA 91
Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 10/62 (16%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           +PLH AA++GH  IV +LL++GADVN+++          +   TALH+A  + H   + L
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKD----------MLKMTALHWATEHNHQEVVEL 118
Query: 107 VV 108
           ++
Sbjct: 119 LI 120

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 50/222 (22%)
Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
            +Y          SG T  H A   G++                                
Sbjct: 65  DDYPDD-------SGWTPFHIACSVGNLEV------------------------------ 87
Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
           VKS  D+  L   +NK  + G+T LH+A    +F+  Q L++  A+V             
Sbjct: 88  VKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--------- 137
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 234
                 PLH AA  G+LK  ++L   G S ++  +  GW PL
Sbjct: 138 -KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 106/266 (39%), Gaps = 71/266 (26%)
Query: 7   CSASGER--------LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
            S+SG R        L+ A ++ D    + LL+    +      GG  +PLH A      
Sbjct: 14  TSSSGRRAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSRE 72
Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------D 110
           +IV LLL +GAD   R            +G T    AA+ G V+ ++L ++        D
Sbjct: 73  DIVELLLRHGADPVLRKK----------NGATPFILAAIAGSVKLLKLFLSKGADVNECD 122
Query: 111 FVPSVPF-------EVMNTQIEGDRGDGSSV--KSKCDQSALSKFVNKAADGGITALHMA 161
           F     F       +V   +    RG   ++  K+K DQ  L K       GG TAL  A
Sbjct: 123 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK-------GGATALMDA 175
Query: 162 ALNGYFDCVQLLLD-----------------LHA-------NVSAVT---FHYGTSMDLI 194
           A  G+ + +++LLD                 +HA       +V A+T     +G  +++ 
Sbjct: 176 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVR 235
Query: 195 GA-GSTPLHFAACGGNLKCCQVLLSR 219
           G  G TPL  A    +L   Q LL +
Sbjct: 236 GERGKTPLILAVEKKHLGLVQRLLEQ 261

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 50/222 (22%)
Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
            +Y          SG T  H A   G++                                
Sbjct: 65  DDYPDD-------SGWTPFHIACSVGNLEV------------------------------ 87
Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
           VKS  D+  L   +NK  + G+T LH+A    +F+  Q L++  A+V             
Sbjct: 88  VKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--------- 137
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 234
                 PLH AA  G+LK  ++L   G S ++  +  GW PL
Sbjct: 138 -KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 85/222 (38%), Gaps = 50/222 (22%)
Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN 
Sbjct: 6   LHQACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
            +Y          SG T  H A   G++                                
Sbjct: 65  DDYPDD-------SGWTPFHIACSVGNLEV------------------------------ 87
Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
           VKS  D+  L   +NK  + G+T LH+A    +F+  Q L++  A+V             
Sbjct: 88  VKSLYDR-PLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKD--------- 137
Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPL 234
                 PLH AA  G+LK  ++L   G S ++  +  GW PL
Sbjct: 138 -KFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL 178

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 61/148 (41%), Gaps = 43/148 (29%)
Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           G T LH A++ G +           PSV + + N       G   +VK            
Sbjct: 10  GETLLHIASIKGDI-----------PSVEYLLQN-------GSDPNVKDH---------- 41
Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
                 G T LH A  +G+   V+LLL   A V+   +             +PLH AA  
Sbjct: 42  -----AGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKN 86
Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLD 235
           G++   ++LLS GASR ++N  G  P+D
Sbjct: 87  GHVDIVKLLLSYGASRNAVNIFGLRPVD 114

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
          G++L+ AAR G   E ++L+     +      G   +PLH AA +GH EIV +LL+ GAD
Sbjct: 3  GKKLLEAARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 71 VNSRNYCGQ 79
          VN+++  G+
Sbjct: 61 VNAQDKFGK 69

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/201 (27%), Positives = 83/201 (41%), Gaps = 31/201 (15%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH A       +V LL+  GA   + +  GQ          TA H A  +    C+R
Sbjct: 47  QTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQ----------TAAHLACEHRSPTCLR 96
Query: 106 LVVADFVP-SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-------GGITA 157
            ++    P ++  E  N   +G      +V ++C Q  +   + + AD        G + 
Sbjct: 97  ALLDSAAPGTLDLEARN--YDGLTALHVAVNTEC-QETVQLLLERGADIDAVDIKSGRSP 153
Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
           L  A  N     VQLLL   ANV+A  +          +GS+ LH A+  G L   + L+
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMY----------SGSSALHSASGRGLLPLVRTLV 203
Query: 218 SRGASRMSLNCNGWLPLDVAR 238
             GA     NC+   PL VAR
Sbjct: 204 RSGADSSLKNCHNDTPLMVAR 224

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 80/203 (39%), Gaps = 54/203 (26%)
Query: 4   SFGCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           + G S +  +L+ AA+ GD    K L     ++C     + ST      PLHFAA     
Sbjct: 2   AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRV 55
Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 118
            +V  LL++GADV++++  G V           LH A   GH     L+V          
Sbjct: 56  SVVEYLLQHGADVHAKDKGGLVP----------LHNACSYGHYEVAELLVKHGA------ 99
Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178
           V+N                   + L KF         T LH AA  G ++  +LLL   A
Sbjct: 100 VVNV------------------ADLWKF---------TPLHEAAAKGKYEICKLLLQHGA 132
Query: 179 NVSAVTFHYGTSMDLIGAGSTPL 201
           + +       T +DL+  G T +
Sbjct: 133 DPTKKNRDGNTPLDLVKDGDTDI 155

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           V+    GG+  LH A   G+++  +LL+   A V+                 TPLH AA 
Sbjct: 68  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAA 117
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
            G  + C++LL  GA     N +G  PLD+ +
Sbjct: 118 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 40/63 (63%), Gaps = 10/63 (15%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           +PLH AA + HN+++ +L ++GA +N+ +  GQ          TALH AA+ GH++  RL
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQ----------TALHRAALAGHLQTCRL 298
Query: 107 VVA 109
           +++
Sbjct: 299 LLS 301

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 98/223 (43%), Gaps = 32/223 (14%)
Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ--VTRADYLSGRTALHFAAVNGHVRCI 104
           +PLH AA+K   E+ +LLL +GAD    N  G+  V  A     R  L +    GH    
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE-FKGHSLLQ 184
Query: 105 RLVVADFVP---SVPFEVMNTQIEGDRGDG-----SSVKSKCDQSA---LSK--FVNKAA 151
               AD      ++  E++N +             +S+  K  Q A   L K   VN+  
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244
Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNL 210
              +T LH+AA   + D +++L             +G  M+ + + G T LH AA  G+L
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVL-----------HKHGAKMNALDSLGQTALHRAALAGHL 293
Query: 211 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS 253
           + C++LLS G+    ++  G+     A   G   ++ +L+ S+
Sbjct: 294 QTCRLLLSYGSDPSIISLQGF----TAAQMGNEAVQQILSEST 332

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           V+    GG+  LH A   G+++  +LLL   A V+A        MDL     TPLH AA 
Sbjct: 84  VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA--------MDLWQ--FTPLHEAAS 133
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
              ++ C +LLS GA    +NC+G   +D+A
Sbjct: 134 KNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 67/253 (26%), Positives = 101/253 (39%), Gaps = 67/253 (26%)
Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ A ++ D    + LL+    +      GG  +PLH A      +IV LLL +GAD   
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW-TPLHNAVQMSREDIVELLLRHGADPVL 67
Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVA--------DFVPSVPFEVMNTQIE 125
           R            +G T    AA+ G V+ ++L ++        DF     F  M   + 
Sbjct: 68  RKK----------NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAF--MEAAVY 115
Query: 126 G---------DRGDGSSV--KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 174
           G          RG   ++  K+K DQ  L K       GG TAL  AA  G+ + +++LL
Sbjct: 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRK-------GGATALMDAAEKGHVEVLKILL 168
Query: 175 D-----------------LHA-------NVSAVT---FHYGTSMDLIGA-GSTPLHFAAC 206
           D                 +HA       +V A+T     +G  +++ G  G TPL  A  
Sbjct: 169 DEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228
Query: 207 GGNLKCCQVLLSR 219
             +L   Q LL +
Sbjct: 229 KKHLGLVQRLLEQ 241

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 79/201 (39%), Gaps = 54/201 (26%)
Query: 6   GCSASGERLVSAARDGDFVEAKML-----LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           G S +  +L+ AA+ GD    K L     ++C     + ST      PLHFAA      +
Sbjct: 6   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQST------PLHFAAGYNRVSV 59
Query: 61  VALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 120
           V  LL++GADV++++  G V           LH A   GH     L+V          V+
Sbjct: 60  VEYLLQHGADVHAKDKGGLVP----------LHNACSYGHYEVAELLVKHGA------VV 103
Query: 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 180
           N                   + L KF         T LH AA  G ++  +LLL   A+ 
Sbjct: 104 NV------------------ADLWKF---------TPLHEAAAKGKYEICKLLLQHGADP 136
Query: 181 SAVTFHYGTSMDLIGAGSTPL 201
           +       T +DL+  G T +
Sbjct: 137 TKKNRDGNTPLDLVKDGDTDI 157

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           V+    GG+  LH A   G+++  +LL+   A V+                 TPLH AA 
Sbjct: 70  VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL----------WKFTPLHEAAA 119
Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
            G  + C++LL  GA     N +G  PLD+ +
Sbjct: 120 KGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GNAVIHDAARAGFLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G   +H AA  G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGFLDTLQTLLENQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 11/97 (11%)
Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G   +H AA  G  D +Q LL+  A+V+               G+ PLH AA  G+L+  
Sbjct: 70  GFAVIHDAARAGQLDTLQTLLEFQADVNIED----------NEGNLPLHLAAKEGHLRVV 119
Query: 214 QVLLSRGASRMS-LNCNGWLPLDVARMWGRHWLEPLL 249
           + L+   AS +   N  G    D+AR++GR+ +  L+
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
           D GITALH A   G+ + V+ L+    NV+A              G TPLH AA   N++
Sbjct: 68  DEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD----------SDGWTPLHCAASCNNVQ 117
Query: 212 CCQVLLSRGASRMSL 226
            C+ L+  GA+  ++
Sbjct: 118 VCKFLVESGAAVFAM 132

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Query: 153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
           G  +AL +A   GY D V++LLD   +V+   ++          G TPL +A  G ++KC
Sbjct: 66  GRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKC 115
Query: 213 CQVLLSRGASRMSLNCNGWLPLDVARMWG 241
            ++LL  GA       +G+  +D+A   G
Sbjct: 116 VKMLLESGADPTIETDSGYNSMDLAVALG 144

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 16/108 (14%)
Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178
           ++++ +EG+      +  + D  +L        D GITALH A   G+ + V+ L+    
Sbjct: 41  LLDSSLEGEFDLVQRIIYEVDDPSLPN------DEGITALHNAVCAGHTEIVKFLVQFGV 94
Query: 179 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
           NV+A              G TPLH AA   N++ C+ L+  GA+  ++
Sbjct: 95  NVNAAD----------SDGWTPLHCAASCNNVQVCKFLVESGAAVFAM 132

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 68/197 (34%), Gaps = 48/197 (24%)
Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH A      EI   LL  G D   R++           G T LH A   G   C+ 
Sbjct: 46  QTPLHLAVITNQPEIAEALLGAGCDPELRDF----------RGNTPLHLACEQG---CLA 92
Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
            V                          +   C    L   +      G T LH+A+++G
Sbjct: 93  SV------------------------GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHG 128
Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
           Y   V+LL+ L A+V+A              G T LH A    N     +LL  GA    
Sbjct: 129 YLGIVELLVSLGADVNAQE---------PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 226 LNCNGWLPLDVARMWGR 242
           +   G+ P  +   WGR
Sbjct: 180 VTYQGYSPYQLT--WGR 194

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	489
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-38
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-35
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-25
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-37
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-31
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-29
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-28
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-24
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-35
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-34
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-32
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-29
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-37
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-36
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-28
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-23
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-32
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-29
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-22
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-09
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-36
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-33
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-24
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	8e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-29
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	8e-34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-31
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	9e-35
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-24
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-30
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-19
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-35
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-31
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-30
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-29
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-28
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-20
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-35
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-29
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	5e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-28
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-35
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-33
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-29
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-35
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-29
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-19
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-29
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-26
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-34
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-32
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-34
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-27
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-33
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-32
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-30
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-28
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-26
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-33
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-32
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-31
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-30
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-08
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-33
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-31
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-28
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-24
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-21
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-33
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-27
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	2e-33
2rfa_A	232	Transient receptor potential cation channel subfa	7e-32
2rfa_A	232	Transient receptor potential cation channel subfa	6e-31
2rfa_A	232	Transient receptor potential cation channel subfa	2e-22
2rfa_A	232	Transient receptor potential cation channel subfa	7e-16
2rfa_A	232	Transient receptor potential cation channel subfa	6e-12
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-33
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-31
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-30
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-21
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-33
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-23
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-22
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-16
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	6e-33
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-21
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-33
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-28
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-22
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-20
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-32
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-31
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-21
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-19
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-11
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-32
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-27
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-20
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-32
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-25
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-20
2etb_A	256	Transient receptor potential cation channel subfam	9e-32
2etb_A	256	Transient receptor potential cation channel subfam	4e-30
2etb_A	256	Transient receptor potential cation channel subfam	4e-20
2etb_A	256	Transient receptor potential cation channel subfam	1e-12
2etb_A	256	Transient receptor potential cation channel subfam	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-31
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-30
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-31
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-29
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-31
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-26
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-30
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-27
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-18
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-28
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-26
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-23
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2pnn_A	273	Transient receptor potential cation channel subfa	2e-29
2pnn_A	273	Transient receptor potential cation channel subfa	4e-29
2pnn_A	273	Transient receptor potential cation channel subfa	4e-23
2pnn_A	273	Transient receptor potential cation channel subfa	5e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-29
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	8e-18
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-29
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-28
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-26
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-28
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-28
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	6e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-20
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-28
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-18
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-26
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-22
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-20
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-26
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-16
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-25
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-23
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-17
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	8e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-19
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	4e-16
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-21
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-18
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-14
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	9e-05
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-09
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	5e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-08
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	6e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	7e-06

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  135 bits (343), Expect = 5e-38
 Identities = 43/197 (21%), Positives = 72/197 (36%), Gaps = 59/197 (29%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            +H  AA+G    +A  +E    +N  +            G T L +AA +G +  +  +
Sbjct: 6   SVHQLAAQGEMLYLATRIEQENVINHTDE----------EGFTPLMWAAAHGQIAVVEFL 55

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                          G  +AL +A   
Sbjct: 56  LQNGAD------------------------------------PQLLGKGRESALSLACSK 79

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           GY D V++LLD   +V+   ++          G TPL +A  G ++KC ++LL  GA   
Sbjct: 80  GYTDIVKMLLDCGVDVNEYDWN----------GGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 225 SLNCNGWLPLDVARMWG 241
               +G+  +D+A   G
Sbjct: 130 IETDSGYNSMDLAVALG 146

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  129 bits (326), Expect = 1e-35
 Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 61/211 (28%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           +   A  G+ +     ++    +      G   +PL +AAA G   +V  LL+NGAD   
Sbjct: 7   VHQLAAQGEMLYLATRIEQENVINHTDEEG--FTPLMWAAAHGQIAVVEFLLQNGADPQL 64

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
                           +AL  A   G+   +++++    D                    
Sbjct: 65  LGK----------GRESALSLACSKGYTDIVKMLLDCGVD-------------------- 94

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                           VN+    G T L  A    +  CV++LL+  A+ +  T      
Sbjct: 95  ----------------VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIET------ 132

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
                +G   +  A   G     QV+ S   
Sbjct: 133 ----DSGYNSMDLAVALGYRSVQQVIESHLL 159

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 99.8 bits (250), Expect = 7e-25
 Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 49/140 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            S L  A +KG+ +IV +LL+ G DVN  ++          +G T L +A    HV+C++
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDW----------NGGTPLLYAVHGNHVKCVK 119

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           +++   AD                                         D G  ++ +A 
Sbjct: 120 MLLESGAD------------------------------------PTIETDSGYNSMDLAV 143

Query: 163 LNGYFDCVQLLLDLHANVSA 182
             GY    Q++      +  
Sbjct: 144 ALGYRSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 4e-20
 Identities = 25/154 (16%), Positives = 41/154 (26%), Gaps = 49/154 (31%)

Query: 87  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
           +   ++H  A  G +  +   +                                      
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENV--------------------------------- 28

Query: 144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
              +N   + G T L  AA +G    V+ LL   A+   +               + L  
Sbjct: 29  ---INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKG----------RESALSL 75

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           A   G     ++LL  G      + NG  PL  A
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYA 109

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 51.2 bits (124), Expect = 7e-08
 Identities = 3/28 (10%), Positives = 10/28 (35%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
            +  A A G+  +  ++  +   +    
Sbjct: 138 SMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 48.9 bits (118), Expect = 4e-07
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 195 GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           GA S  +H  A  G +      + +       +  G+ PL  A
Sbjct: 1   GANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWA 43

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  138 bits (349), Expect = 3e-37
 Identities = 49/213 (23%), Positives = 79/213 (37%), Gaps = 46/213 (21%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA+ G+ +I   L+  GA V + N            G T L  A            
Sbjct: 109 PLHAAASCGYLDIAEYLISQGAHVGAVNS----------EGDTPLDIAEEEAME------ 152

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSS---VKSKCDQSALSKF-------VNKAADGGITA 157
                     E++  ++     D  +    + +       ++         + A  G TA
Sbjct: 153 ----------ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTA 202

Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
           LH+AA  GY + ++LL+    +V+   +           G TPLH AA  G  + C++L+
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILV 252

Query: 218 SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA 250
                  ++N  G    DVA      +LE L  
Sbjct: 253 ENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  122 bits (308), Expect = 1e-31
 Identities = 50/251 (19%), Positives = 77/251 (30%), Gaps = 78/251 (31%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           A   GD  E   LL    D N          GL + LH A    + ++V  L+ENGA++N
Sbjct: 47  ACSSGDTEEVLRLLERGADIN---YA--NVDGL-TALHQACIDDNVDMVKFLVENGANIN 100

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRG 129
             +            G   LH AA  G++     ++   A                    
Sbjct: 101 QPDN----------EGWIPLHAAASCGYLDIAEYLISQGAH------------------- 131

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYG 188
                            V      G T L +A      + +Q  ++    ++ A      
Sbjct: 132 -----------------VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA-ARKEE 173

Query: 189 TSMDLI---------GA--------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
             + L                    G T LH AA  G  +  ++L+         + +GW
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW 233

Query: 232 LPLDVARMWGR 242
            PL  A  WG+
Sbjct: 234 TPLHAAAHWGK 244

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  115 bits (291), Expect = 3e-29
 Identities = 36/193 (18%), Positives = 58/193 (30%), Gaps = 60/193 (31%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
                   G    +   +        +                    A  +G    +  +
Sbjct: 11  NEQLKRWIGSETDLEPPVVKRKKTKVKF-----------DDGAVFLAACSSGDTEEVLRL 59

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                    +N A   G+TALH A ++
Sbjct: 60  LERGAD------------------------------------INYANVDGLTALHQACID 83

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
              D V+ L++  AN++               G  PLH AA  G L   + L+S+GA   
Sbjct: 84  DNVDMVKFLVENGANINQPDNE----------GWIPLHAAASCGYLDIAEYLISQGAHVG 133

Query: 225 SLNCNGWLPLDVA 237
           ++N  G  PLD+A
Sbjct: 134 AVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  112 bits (283), Expect = 4e-28
 Identities = 42/178 (23%), Positives = 61/178 (34%), Gaps = 59/178 (33%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +    A + G  E V  LLE GAD+N  N            G TALH A ++ +V  ++
Sbjct: 41  GAVFLAACSSGDTEEVLRLLERGADINYANV----------DGLTALHQACIDDNVDMVK 90

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            +V   A+                                    +N+  + G   LH AA
Sbjct: 91  FLVENGAN------------------------------------INQPDNEGWIPLHAAA 114

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
             GY D  + L+   A+V AV             G TPL  A      +  Q  ++R 
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSE----------GDTPLDIAEEEAMEELLQNEVNRQ 162

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  100 bits (252), Expect = 6e-24
 Identities = 27/180 (15%), Positives = 46/180 (25%), Gaps = 59/180 (32%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           + +           +    L     +                SG TALH AA  G+   +
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHINDVRHAK----------SGGTALHVAAAKGYTEVL 215

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
           +L++    D                                    VN     G T LH A
Sbjct: 216 KLLIQARYD------------------------------------VNIKDYDGWTPLHAA 239

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           A  G  +  ++L++   ++ AV             G T    A         ++   +  
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNKV----------GQTAFDVADEDILGYLEELQKKQNL 289

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.1 bits (196), Expect = 2e-16
 Identities = 30/138 (21%), Positives = 44/138 (31%), Gaps = 49/138 (35%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH AAAKG+ E++ LL++   DVN ++Y           G T LH AA  G     R++
Sbjct: 202 ALHVAAAKGYTEVLKLLIQARYDVNIKDY----------DGWTPLHAAAHWGKEEACRIL 251

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           V    D                                    +      G TA  +A  +
Sbjct: 252 VENLCD------------------------------------MEAVNKVGQTAFDVADED 275

Query: 165 GYFDCVQLLLDLHANVSA 182
                 +L    +   S 
Sbjct: 276 ILGYLEELQKKQNLLHSE 293

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 23/150 (15%), Positives = 38/150 (25%), Gaps = 44/150 (29%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
            +         G                    +   +          K K          
Sbjct: 8   QKRNEQLKRWIGSE----------------TDLEPPVVK----RKKTKVK---------- 37

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
                        A  +G  + V  LL+  A+++               G T LH A   
Sbjct: 38  ----FDDGAVFLAACSSGDTEEVLRLLERGADINYANVD----------GLTALHQACID 83

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
            N+   + L+  GA+    +  GW+PL  A
Sbjct: 84  DNVDMVKFLVENGANINQPDNEGWIPLHAA 113

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 15/89 (16%), Positives = 22/89 (24%), Gaps = 12/89 (13%)

Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 208
             A        +    G    ++  +          F  G               A   G
Sbjct: 4   ADAKQK-RNEQLKRWIGSETDLEPPVVKRKKTKV-KFDDG----------AVFLAACSSG 51

Query: 209 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           + +    LL RGA     N +G   L  A
Sbjct: 52  DTEEVLRLLERGADINYANVDGLTALHQA 80

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  141 bits (357), Expect = 3e-37
 Identities = 65/244 (26%), Positives = 89/244 (36%), Gaps = 65/244 (26%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
              G +     L  AA+      A+ LL         S  G   +PLH AA +GH E+VA
Sbjct: 209 AWNGYTP----LHIAAKQNQVEVARSLLQYGGSANAESVQG--VTPLHLAAQEGHAEMVA 262

Query: 63  LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEV 119
           LLL   A+ N  N           SG T LH  A  GHV    +++              
Sbjct: 263 LLLSKQANGNLGNK----------SGLTPLHLVAQEGHVPVADVLIKHGVM--------- 303

Query: 120 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 179
                                      V+     G T LH+A+  G    V+ LL   A+
Sbjct: 304 ---------------------------VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 336

Query: 180 VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARM 239
           V+A T            G +PLH AA  G+     +LL  GAS   ++ +G  PL +A+ 
Sbjct: 337 VNAKTKL----------GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386

Query: 240 WGRH 243
            G  
Sbjct: 387 LGYI 390

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  136 bits (344), Expect = 2e-35
 Identities = 55/195 (28%), Positives = 78/195 (40%), Gaps = 59/195 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH AA  GH E+   LL+N A VN++              +T LH AA  GH   ++
Sbjct: 48  ETPLHMAARAGHTEVAKYLLQNKAKVNAKAK----------DDQTPLHCAARIGHTNMVK 97

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++   A+                                     N A   G T LH+AA
Sbjct: 98  LLLENNAN------------------------------------PNLATTAGHTPLHIAA 121

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
             G+ + V  LL+  A+ + +T            G TPLH AA  G ++  ++LL R A 
Sbjct: 122 REGHVETVLALLEKEASQACMTKK----------GFTPLHVAAKYGKVRVAELLLERDAH 171

Query: 223 RMSLNCNGWLPLDVA 237
             +   NG  PL VA
Sbjct: 172 PNAAGKNGLTPLHVA 186

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (337), Expect = 2e-34
 Identities = 61/224 (27%), Positives = 83/224 (37%), Gaps = 61/224 (27%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AAR G     K+LL+ N      +T G  ++PLH AA +GH E V  LLE  A       
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAG--HTPLHIAAREGHVETVLALLEKEASQACMTK 144

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSS 133
                      G T LH AA  G VR   L++   A                        
Sbjct: 145 ----------KGFTPLHVAAKYGKVRVAELLLERDAH----------------------- 171

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
                         N A   G+T LH+A  +   D V+LLL    +  +  ++       
Sbjct: 172 -------------PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN------- 211

Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
              G TPLH AA    ++  + LL  G S  + +  G  PL +A
Sbjct: 212 ---GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLA 252

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  133 bits (336), Expect = 2e-34
 Identities = 56/195 (28%), Positives = 75/195 (38%), Gaps = 59/195 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH A+  GH  IV  LL+ GA  N  N              T LH AA  GH    +
Sbjct: 15  LTPLHVASFMGHLPIVKNLLQRGASPNVSNV----------KVETPLHMAARAGHTEVAK 64

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   A                                     VN  A    T LH AA
Sbjct: 65  YLLQNKAK------------------------------------VNAKAKDDQTPLHCAA 88

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
             G+ + V+LLL+ +AN +  T           AG TPLH AA  G+++    LL + AS
Sbjct: 89  RIGHTNMVKLLLENNANPNLAT----------TAGHTPLHIAAREGHVETVLALLEKEAS 138

Query: 223 RMSLNCNGWLPLDVA 237
           +  +   G+ PL VA
Sbjct: 139 QACMTKKGFTPLHVA 153

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (332), Expect = 9e-34
 Identities = 54/232 (23%), Positives = 77/232 (33%), Gaps = 61/232 (26%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A    +    K+LL         +  G   +PLH AA +   E+   LL+ G   N+
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNG--YTPLHIAAKQNQVEVARSLLQYGGSANA 240

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
            +            G T LH AA  GH   + L++   A+                    
Sbjct: 241 ESV----------QGVTPLHLAAQEGHAEMVALLLSKQAN-------------------- 270

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                            N     G+T LH+ A  G+     +L+     V A T      
Sbjct: 271 ----------------GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM---- 310

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
                 G TPLH A+  GN+K  + LL   A   +    G+ PL  A   G 
Sbjct: 311 ------GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 356

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (330), Expect = 2e-33
 Identities = 64/224 (28%), Positives = 83/224 (37%), Gaps = 61/224 (27%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AAR G    AK LL     +   +      +PLH AA  GH  +V LLLEN A+ N    
Sbjct: 54  AARAGHTEVAKYLLQNKAKVNAKAKDD--QTPLHCAARIGHTNMVKLLLENNANPNLATT 111

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSS 133
                     +G T LH AA  GHV  +  ++   A                        
Sbjct: 112 ----------AGHTPLHIAAREGHVETVLALLEKEAS----------------------- 138

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
                               G T LH+AA  G     +LLL+  A+ +A   +       
Sbjct: 139 -------------QACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN------- 178

Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
              G TPLH A    NL   ++LL RG S  S   NG+ PL +A
Sbjct: 179 ---GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  130 bits (330), Expect = 2e-33
 Identities = 44/195 (22%), Positives = 69/195 (35%), Gaps = 59/195 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH AA  G   +  LLLE  A  N+             +G T LH A  + ++  ++
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGK----------NGLTPLHVAVHHNNLDIVK 196

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++                                          +  A  G T LH+AA
Sbjct: 197 LLLPRGGS------------------------------------PHSPAWNGYTPLHIAA 220

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
                +  + LL    + +A +            G TPLH AA  G+ +   +LLS+ A+
Sbjct: 221 KQNQVEVARSLLQYGGSANAESVQ----------GVTPLHLAAQEGHAEMVALLLSKQAN 270

Query: 223 RMSLNCNGWLPLDVA 237
               N +G  PL + 
Sbjct: 271 GNLGNKSGLTPLHLV 285

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  127 bits (323), Expect = 1e-32
 Identities = 56/227 (24%), Positives = 80/227 (35%), Gaps = 61/227 (26%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  AA+ G    A++LL+ +         G   +PLH A    + +IV LLL  G   +S
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHS 207

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
             +          +G T LH AA    V   R ++                         
Sbjct: 208 PAW----------NGYTPLHIAAKQNQVEVARSLLQYGGS-------------------- 237

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                            N  +  G+T LH+AA  G+ + V LLL   AN +         
Sbjct: 238 ----------------ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS---- 277

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
                 G TPLH  A  G++    VL+  G    +    G+ PL VA
Sbjct: 278 ------GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVA 318

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  118 bits (299), Expect = 2e-29
 Identities = 40/197 (20%), Positives = 68/197 (34%), Gaps = 62/197 (31%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH  A +GH  +  +L+++G  V++              G T LH A+  G+++ ++ +
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATTR----------MGYTPLHVASHYGNIKLVKFL 330

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                    VN     G + LH AA  
Sbjct: 331 LQHQAD------------------------------------VNAKTKLGYSPLHQAAQQ 354

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL---LSRGA 221
           G+ D V LLL   A+ + V+            G+TPL  A   G +    VL       +
Sbjct: 355 GHTDIVTLLLKNGASPNEVSSD----------GTTPLAIAKRLGYISVTDVLKVVTDETS 404

Query: 222 SRMSLNCNGWLPLDVAR 238
             +  + +     +   
Sbjct: 405 FVLVSDKHRMSFPETVD 421

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 97.2 bits (243), Expect = 5e-22
 Identities = 37/174 (21%), Positives = 53/174 (30%), Gaps = 59/174 (33%)

Query: 67  NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQ 123
            G                  SG T LH A+  GH+  ++ ++   A              
Sbjct: 3   PGISGGGGGE----------SGLTPLHVASFMGHLPIVKNLLQRGAS------------- 39

Query: 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
                                   N +     T LHMAA  G+ +  + LL   A V+A 
Sbjct: 40  -----------------------PNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAK 76

Query: 184 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
                          TPLH AA  G+    ++LL   A+       G  PL +A
Sbjct: 77  AKD----------DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 120

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.6 bits (239), Expect = 2e-21
 Identities = 35/209 (16%), Positives = 64/209 (30%), Gaps = 69/209 (33%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
            A++G    A +L+     +   +  G   +PLH A+  G+ ++V  LL++ ADVN++  
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTRMG--YTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSS 133
                      G + LH AA  GH   + L++   A                        
Sbjct: 343 ----------LGYSPLHQAAQQGHTDIVTLLLKNGAS----------------------- 369

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
                         N+ +  G T L +A   GY     +L  +            + + +
Sbjct: 370 -------------PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDE--------TSFVLV 408

Query: 194 IGA-GSTPLHFAACGGNLKCCQVLLSRGA 221
                 +                +L    
Sbjct: 409 SDKHRMSFPETV---------DEILDVSE 428

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 30/104 (28%), Positives = 42/104 (40%), Gaps = 16/104 (15%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
              G +     L  A+  G+    K LL     +   +  G   SPLH AA +GH +IV 
Sbjct: 308 TRMGYTP----LHVASHYGNIKLVKFLLQHQADVNAKTKLG--YSPLHQAAQQGHTDIVT 361

Query: 63  LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           LLL+NGA  N  +            G T L  A   G++    +
Sbjct: 362 LLLKNGASPNEVSS----------DGTTPLAIAKRLGYISVTDV 395

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  133 bits (337), Expect = 5e-37
 Identities = 45/223 (20%), Positives = 67/223 (30%), Gaps = 60/223 (26%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           +   A  G+  + K  L     L       G   PL +A+A G  E V  LLE GAD + 
Sbjct: 6   IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFT-PLIWASAFGEIETVRFLLEWGADPHI 64

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
                           +AL  A+  G+   + L++    D                    
Sbjct: 65  LAK----------ERESALSLASTGGYTDIVGLLLERDVD-------------------- 94

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                           +N     G T L  A    +  CV+ LL   A+++         
Sbjct: 95  ----------------INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEA------ 132

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP 233
                +G TP+  A   G  K  QV+ +        N     P
Sbjct: 133 ----DSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  130 bits (330), Expect = 4e-36
 Identities = 46/203 (22%), Positives = 79/203 (38%), Gaps = 61/203 (30%)

Query: 43  GGLNSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
           G  +  +H  AA+G  + +   L  G + VN  +            G T L +A+  G +
Sbjct: 1   GD-SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE----------RGFTPLIWASAFGEI 49

Query: 102 RCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL 158
             +R ++   AD                                     +  A    +AL
Sbjct: 50  ETVRFLLEWGAD------------------------------------PHILAKERESAL 73

Query: 159 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
            +A+  GY D V LLL+   +++   ++          G TPL +A  G ++KC + LL+
Sbjct: 74  SLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLYAVRGNHVKCVEALLA 123

Query: 219 RGASRMSLNCNGWLPLDVARMWG 241
           RGA   +   +G+ P+D+A   G
Sbjct: 124 RGADLTTEADSGYTPMDLAVALG 146

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  133 bits (336), Expect = 4e-36
 Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 46/190 (24%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH A      EI   LL  G D   R++           G T LH A   G +  + ++
Sbjct: 48  PLHLAVITNQPEIAEALLGAGCDPELRDF----------RGNTPLHLACEQGCLASVGVL 97

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                                         C    L   +      G T LH+A+++GY 
Sbjct: 98  T---------------------------QSCTTPHLHSILKATNYNGHTCLHLASIHGYL 130

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
             V+LL+ L A+V+A              G T LH A    N     +LL  GA    + 
Sbjct: 131 GIVELLVSLGADVNAQEPCN---------GRTALHLAVDLQNPDLVSLLLKCGADVNRVT 181

Query: 228 CNGWLPLDVA 237
             G+ P  + 
Sbjct: 182 YQGYSPYQLT 191

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  121 bits (307), Expect = 5e-32
 Identities = 40/189 (21%), Positives = 67/189 (35%), Gaps = 54/189 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N+PLH A  +G    V +L ++    +  +    +   +Y +G T LH A+++G++  + 
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHS---ILKATNY-NGHTCLHLASIHGYLGIVE 134

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMA 161
           L+V   AD                                    VN +    G TALH+A
Sbjct: 135 LLVSLGAD------------------------------------VNAQEPCNGRTALHLA 158

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
                 D V LLL   A+V+ VT+           G +P        + +  Q L     
Sbjct: 159 VDLQNPDLVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQQQLGQLTL 208

Query: 222 SRMSLNCNG 230
             + +    
Sbjct: 209 ENLQMLPES 217

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  112 bits (283), Expect = 9e-29
 Identities = 40/203 (19%), Positives = 61/203 (30%), Gaps = 64/203 (31%)

Query: 46  NSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
           +S LH A          E++  +  + A +N +N   Q          T LH A +    
Sbjct: 9   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQ----------TPLHLAVITNQP 58

Query: 102 RCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL 158
                ++    D                                           G T L
Sbjct: 59  EIAEALLGAGCD------------------------------------PELRDFRGNTPL 82

Query: 159 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
           H+A   G    V +L          +    T+ +    G T LH A+  G L   ++L+S
Sbjct: 83  HLACEQGCLASVGVLTQSCTTPHLHSILKATNYN----GHTCLHLASIHGYLGIVELLVS 138

Query: 219 RGASRMSLN----CNGWLPLDVA 237
            GA    +N    CNG   L +A
Sbjct: 139 LGA---DVNAQEPCNGRTALHLA 158

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 33/199 (16%), Positives = 51/199 (25%), Gaps = 68/199 (34%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNS-------PLHFAAAKGHNEIVALLLENGA 69
           A   G      +L               L +        LH A+  G+  IV LL+  GA
Sbjct: 85  ACEQGCLASVGVLTQSC---TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGA 141

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
           DVN++         +  +GRTALH A    +   + L++   AD                
Sbjct: 142 DVNAQ---------EPCNGRTALHLAVDLQNPDLVSLLLKCGAD---------------- 176

Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186
                               VN+    G +   +          Q L  L      +   
Sbjct: 177 --------------------VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPE 216

Query: 187 YGTSMDLIGAGSTPLHFAA 205
                           +  
Sbjct: 217 ----------SEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.9 bits (224), Expect = 1e-20
 Identities = 29/158 (18%), Positives = 44/158 (27%), Gaps = 49/158 (31%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK-- 145
           G + LH A ++        V+                               +       
Sbjct: 8   GDSFLHLAIIHEEKALTMEVI-------------------------------RQVKGDLA 36

Query: 146 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
           F+N   +   T LH+A +    +  + LL    +     F           G+TPLH A 
Sbjct: 37  FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFR----------GNTPLHLAC 86

Query: 206 CGGNLKCCQVLLSRGASRMSL------NCNGWLPLDVA 237
             G L    VL     +          N NG   L +A
Sbjct: 87  EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA 124

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 10/85 (11%), Positives = 19/85 (22%), Gaps = 14/85 (16%)

Query: 17  AARDGDFVEAKMLLDCNPCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN 75
           A    +     +LL C   +     T+ G  SP      +    I   L +   +     
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRV--TYQG-YSPYQLTWGRPSTRIQQQLGQLTLENLQML 214

Query: 76  YCGQVTRADYLSGRTALHFAAVNGH 100
                             +   +  
Sbjct: 215 P----------ESEDEESYDTESEF 229

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  130 bits (329), Expect = 7e-36
 Identities = 45/199 (22%), Positives = 73/199 (36%), Gaps = 60/199 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
            +     +G+   V L L+N   D+N  +            G + LH+A   G    + +
Sbjct: 8   DIFTQCREGNAVAVRLWLDNTENDLNQGDD----------HGFSPLHWACREGRSAVVEM 57

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++   A                                     +N    G  T LH+AA 
Sbjct: 58  LIMRGAR------------------------------------INVMNRGDDTPLHLAAS 81

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
           +G+ D VQ LL   A+++AV  H          G+ PLH+A   G  +  + L++ GA  
Sbjct: 82  HGHRDIVQKLLQYKADINAVNEH----------GNVPLHYACFWGQDQVAEDLVANGALV 131

Query: 224 MSLNCNGWLPLDVARMWGR 242
              N  G +P+D A+   R
Sbjct: 132 SICNKYGEMPVDKAKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  124 bits (313), Expect = 1e-33
 Identities = 41/211 (19%), Positives = 66/211 (31%), Gaps = 60/211 (28%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           + +  R+G+ V  ++ LD            G  SPLH+A  +G + +V +L+  GA +N 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHG-FSPLHWACREGRSAVVEMLIMRGARINV 67

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
            N              T LH AA +GH   ++ ++   AD                    
Sbjct: 68  MNR----------GDDTPLHLAASHGHRDIVQKLLQYKAD-------------------- 97

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                           +N   + G   LH A   G     + L+   A VS    +    
Sbjct: 98  ----------------INAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKY---- 137

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
                 G  P+  A         +     G 
Sbjct: 138 ------GEMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 98.7 bits (247), Expect = 2e-24
 Identities = 26/142 (18%), Positives = 42/142 (29%), Gaps = 49/142 (34%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA+ GH +IV  LL+  AD+N+ N            G   LH+A   G  +    +
Sbjct: 75  PLHLAASHGHRDIVQKLLQYKADINAVNE----------HGNVPLHYACFWGQDQVAEDL 124

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           V   A                                     V+     G   +  A   
Sbjct: 125 VANGAL------------------------------------VSICNKYGEMPVDKAKAP 148

Query: 165 GYFDCVQLLLDLHANVSAVTFH 186
                 +    +  N++ + + 
Sbjct: 149 LRELLRERAEKMGQNLNRIPYK 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 83.6 bits (208), Expect = 5e-19
 Identities = 32/156 (20%), Positives = 52/156 (33%), Gaps = 42/156 (26%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
               +      G+   +RL +                  D  +                +
Sbjct: 5   FMDDIFTQCREGNAVAVRLWL------------------DNTEND--------------L 32

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           N+  D G + LH A   G    V++L+   A ++ +               TPLH AA  
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRG----------DDTPLHLAASH 82

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
           G+    Q LL   A   ++N +G +PL  A  WG+ 
Sbjct: 83  GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQD 118

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 56.3 bits (137), Expect = 1e-09
 Identities = 8/55 (14%), Positives = 13/55 (23%), Gaps = 16/55 (29%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVR 102
           P+  A A     +     + G ++N                R         G  R
Sbjct: 141 PVDKAKAPLRELLRERAEKMGQNLN----------------RIPYKDTFWKGTTR 179

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  131 bits (332), Expect = 8e-36
 Identities = 39/194 (20%), Positives = 59/194 (30%), Gaps = 52/194 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA +G+   +   L+N   VN  +           +G TAL++A   GH   + ++
Sbjct: 76  PLHEAAKRGNLSWLRECLDNRVGVNGLDK----------AGSTALYWACHGGHKDIVEML 125

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                                      +   +       +N+    G TALH AA  GY 
Sbjct: 126 FT-------------------------QPNIE-------LNQQNKLGDTALHAAAWKGYA 153

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
           D VQLLL   A                         A         +      A R   N
Sbjct: 154 DIVQLLLAKGARTDLRNIE----------KKLAFDMATNAACASLLKKKQGTDAVRTLSN 203

Query: 228 CNGWLPLDVARMWG 241
              +L  + + +  
Sbjct: 204 AEDYLDDEDSDLEH 217

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  114 bits (288), Expect = 1e-29
 Identities = 39/236 (16%), Positives = 59/236 (25%), Gaps = 75/236 (31%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           +  A    +      L     D         T            +KG   ++        
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDT------NWWKGTSKGRTGLIPSNYVAEQ 69

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
             +                   LH AA  G++  +R  +                     
Sbjct: 70  AES---------------IDNPLHEAAKRGNLSWLRECLDNRVG---------------- 98

Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTF 185
                               VN     G TAL+ A   G+ D V++L       ++    
Sbjct: 99  --------------------VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK 138

Query: 186 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
                      G T LH AA  G     Q+LL++GA     N    L  D+A    
Sbjct: 139 L----------GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAA 184

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  108 bits (273), Expect = 2e-27
 Identities = 29/196 (14%), Positives = 46/196 (23%), Gaps = 59/196 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            +  A           L     D+                  T        G       +
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGDIIYITD----------MSDTNWWKGTSKGRT----GL 60

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
           +                                   S +V + A+     LH AA  G  
Sbjct: 61  IP----------------------------------SNYVAEQAESIDNPLHEAAKRGNL 86

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSL 226
             ++  LD    V+ +             GST L++A  GG+    ++L +         
Sbjct: 87  SWLRECLDNRVGVNGLDKA----------GSTALYWACHGGHKDIVEMLFTQPNIELNQQ 136

Query: 227 NCNGWLPLDVARMWGR 242
           N  G   L  A   G 
Sbjct: 137 NKLGDTALHAAAWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 23/169 (13%), Positives = 44/169 (26%), Gaps = 60/169 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           ++ L++A   GH +IV +L  +   ++N +N            G TALH AA  G+   +
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNK----------LGDTALHAAAWKGYADIV 156

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
           +L++   A                                      +        A  MA
Sbjct: 157 QLLLAKGAR------------------------------------TDLRNIEKKLAFDMA 180

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
                   ++      A  +                      +    + 
Sbjct: 181 TNAACASLLKKKQGTDAVRTLSN----------AEDYLDDEDSDLEHHH 219

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 21/121 (17%), Positives = 31/121 (25%), Gaps = 43/121 (35%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH AA KG+ +IV LLL  GA  + RN             + A   A            
Sbjct: 143 ALHAAAWKGYADIVQLLLAKGARTDLRNI----------EKKLAFDMATNAACA------ 186

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                      +              +K K    A+      +          + L  + 
Sbjct: 187 ----------SL--------------LKKKQGTDAV---RTLSNAEDYLDDEDSDLEHHH 219

Query: 168 D 168
            
Sbjct: 220 H 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 25/113 (22%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 143 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT------FHYGTS---MDL 193
           +SK   K    G   +  A           L     ++  +T      +  GTS     L
Sbjct: 1   MSKPPPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGL 60

Query: 194 IGA---------GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           I +            PLH AA  GNL   +  L        L+  G   L  A
Sbjct: 61  IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWA 113

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 5/46 (10%), Positives = 9/46 (19%)

Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
           G   +  A      +    L       + +              GR
Sbjct: 12  GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGR 57

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  132 bits (334), Expect = 9e-36
 Identities = 45/201 (22%), Positives = 73/201 (36%), Gaps = 59/201 (29%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH+A  +GH  +V  L++ GAD +  +            G + +H AA  GH   +  +
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDG----------EGCSCIHLAAQFGHTSIVAYL 128

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +    D                                    V+     G+T L  AA  
Sbjct: 129 IAKGQD------------------------------------VDMMDQNGMTPLMWAAYR 152

Query: 165 GY-FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
            +  D  +LLL  + +V+    ++          +T LH+A   GN     +LL  GA+ 
Sbjct: 153 THSVDPTRLLLTFNVSVNLGDKYH---------KNTALHWAVLAGNTTVISLLLEAGANV 203

Query: 224 MSLNCNGWLPLDVARMWGRHW 244
            + N  G   LD+A+     W
Sbjct: 204 DAQNIKGESALDLAKQRKNVW 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  126 bits (320), Expect = 8e-34
 Identities = 40/204 (19%), Positives = 64/204 (31%), Gaps = 61/204 (29%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            +  A   G  E    L+E G DV   +              T LH+AA+N  +  ++  
Sbjct: 12  DIVKATQYGIYERCRELVEAGYDVRQPDK----------ENVTLLHWAAINNRIDLVKYY 61

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAAL 163
           +   A                                     V+    D   T LH A  
Sbjct: 62  ISKGAI------------------------------------VDQLGGDLNSTPLHWATR 85

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
            G+   V  L+   A+ S +             G + +H AA  G+      L+++G   
Sbjct: 86  QGHLSMVVQLMKYGADPSLIDGE----------GCSCIHLAAQFGHTSIVAYLIAKGQDV 135

Query: 224 MSLNCNGWLPLDVARMWGRHWLEP 247
             ++ NG  PL  A     H ++P
Sbjct: 136 DMMDQNGMTPLMWAAYRT-HSVDP 158

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  119 bits (301), Expect = 3e-31
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 62/229 (27%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           +V A + G +   + L++    + +        + LH+AA     ++V   +  GA V+ 
Sbjct: 13  IVKATQYGIYERCRELVEAGYDVRQPDKEN--VTLLHWAAINNRIDLVKYYISKGAIVDQ 70

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
                           T LH+A   GH+  +  ++   AD                    
Sbjct: 71  L---------GGDLNSTPLHWATRQGHLSMVVQLMKYGAD-------------------- 101

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                            +     G + +H+AA  G+   V  L+    +V  +  +    
Sbjct: 102 ----------------PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN---- 141

Query: 191 MDLIGAGSTPLHFAACGGN-LKCCQVLLSRGASR-MSLNCNGWLPLDVA 237
                 G TPL +AA   + +   ++LL+   S  +    +    L  A
Sbjct: 142 ------GMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWA 184

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  118 bits (299), Expect = 7e-31
 Identities = 40/178 (22%), Positives = 55/178 (30%), Gaps = 51/178 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            S +H AA  GH  IVA L+  G DV+  +           +G T L +AA   H     
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ----------NGMTPLMWAAYRTH----S 155

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           +     + +                  SV                     TALH A L G
Sbjct: 156 VDPTRLLLTF---------------NVSVNLGDK------------YHKNTALHWAVLAG 188

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
               + LLL+  ANV A              G + L  A    N+     L     ++
Sbjct: 189 NTTVISLLLEAGANVDAQNIK----------GESALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 30/150 (20%), Positives = 46/150 (30%), Gaps = 42/150 (28%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
               +  A   G     R +V                  + G         D       V
Sbjct: 9   STWDIVKATQYGIYERCRELV------------------EAG--------YD-------V 35

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
            +     +T LH AA+N   D V+  +   A V  +              STPLH+A   
Sbjct: 36  RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL---------NSTPLHWATRQ 86

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           G+L     L+  GA    ++  G   + +A
Sbjct: 87  GHLSMVVQLMKYGADPSLIDGEGCSCIHLA 116

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.4 bits (223), Expect = 2e-20
 Identities = 26/139 (18%), Positives = 41/139 (29%), Gaps = 49/139 (35%)

Query: 48  PLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           PL +AA + H+ +   LLL     VN           D     TALH+A + G+   I L
Sbjct: 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLG---------DKYHKNTALHWAVLAGNTTVISL 195

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++   A+                                    V+     G +AL +A  
Sbjct: 196 LLEAGAN------------------------------------VDAQNIKGESALDLAKQ 219

Query: 164 NGYFDCVQLLLDLHANVSA 182
                 +  L +       
Sbjct: 220 RKNVWMINHLQEARQAKGY 238

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.3 bits (189), Expect = 6e-16
 Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 12/94 (12%)

Query: 14  LVSAARDGDFVE-AKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L+ AA     V+  ++LL  N  +     +   N+ LH+A   G+  +++LLLE GA+V+
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHK-NTALHWAVLAGNTTVISLLLEAGANVD 204

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           ++N            G +AL  A    +V  I  
Sbjct: 205 AQNI----------KGESALDLAKQRKNVWMINH 228

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.1 bits (178), Expect = 2e-14
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           +    D     +  A   G ++  + L++   +V                  T LH+AA 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKE----------NVTLLHWAAI 51

Query: 207 GGNLKCCQVLLSRGA 221
              +   +  +S+GA
Sbjct: 52  NNRIDLVKYYISKGA 66

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
            L  A  + +  ++  L E        N
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  129 bits (328), Expect = 1e-35
 Identities = 45/216 (20%), Positives = 70/216 (32%), Gaps = 74/216 (34%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
            +   +DG             D     ++Y T      P   AA K   + ++ LLE   
Sbjct: 18  YLIEWKDGHSPSWVPSSYIAADVV---SEYET------PWWTAARKADEQALSQLLE-DR 67

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
           DV++ +           +GRTAL F A  G  +C+RL+    AD                
Sbjct: 68  DVDAVDE----------NGRTALLFVAGLGSDKCVRLLAEAGAD---------------- 101

Query: 127 DRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF 185
                               ++ +   GG+TALHMAA     + V+ L++L A++     
Sbjct: 102 --------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141

Query: 186 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
                      G T L  A            +  G 
Sbjct: 142 R----------GLTALELAREILKTTPKGNPMQFGR 167

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  127 bits (322), Expect = 9e-35
 Identities = 36/195 (18%), Positives = 54/195 (27%), Gaps = 56/195 (28%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
                   GH+          ADV S                T    AA     + +  +
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAADVVSE-------------YETPWWTAARKADEQALSQL 63

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                           +E             D       V+   + G TAL   A  G  
Sbjct: 64  ----------------LED-----------RD-------VDAVDENGRTALLFVAGLGSD 89

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
            CV+LL +  A++                G T LH AA     +  + L+  GA     +
Sbjct: 90  KCVRLLAEAGADLDHRDMRG---------GLTALHMAAGYVRPEVVEALVELGADIEVED 140

Query: 228 CNGWLPLDVARMWGR 242
             G   L++AR   +
Sbjct: 141 ERGLTALELAREILK 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 98.0 bits (245), Expect = 4e-24
 Identities = 28/136 (20%), Positives = 40/136 (29%), Gaps = 48/136 (35%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L F A  G ++ V LL E GAD++ R         D   G TALH AA       +  +
Sbjct: 79  ALLFVAGLGSDKCVRLLAEAGADLDHR---------DMRGGLTALHMAAGYVRPEVVEAL 129

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           V   AD                                    +    + G+TAL +A   
Sbjct: 130 VELGAD------------------------------------IEVEDERGLTALELAREI 153

Query: 165 GYFDCVQLLLDLHANV 180
                    +     +
Sbjct: 154 LKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 76.4 bits (189), Expect = 2e-16
 Identities = 27/159 (16%), Positives = 42/159 (26%), Gaps = 54/159 (33%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           G         +GH                                         +     
Sbjct: 14  GAMEYLIEWKDGHSPSWVP-----------------------------------SSYIAA 38

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           +  ++   T    AA       +  LL+   +V AV  +          G T L F A  
Sbjct: 39  DVVSEYE-TPWWTAARKADEQALSQLLE-DRDVDAVDEN----------GRTALLFVAGL 86

Query: 208 GNLKCCQVLLSRGASRMSLNC----NGWLPLDVARMWGR 242
           G+ KC ++L   GA    L+      G   L +A  + R
Sbjct: 87  GSDKCVRLLAEAGA---DLDHRDMRGGLTALHMAAGYVR 122

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 15/96 (15%)

Query: 143 LSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 201
           ++K +     G G     +   +G+         + A+V +                TP 
Sbjct: 2   VNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-------------EYETPW 48

Query: 202 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
             AA   + +    LL       +++ NG   L   
Sbjct: 49  WTAARKADEQALSQLLE-DRDVDAVDENGRTALLFV 83

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.3 bits (111), Expect = 3e-06
 Identities = 3/25 (12%), Positives = 6/25 (24%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVN 72
            L  A            ++ G  + 
Sbjct: 146 ALELAREILKTTPKGNPMQFGRRIG 170

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  134 bits (341), Expect = 1e-35
 Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 40/193 (20%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           NS LH+A      ++    +E G DVN  +                L+ +     V   +
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDN----------EHTVPLYLSVRAAMVLLTK 261

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
            ++                   + D   +++    +  +  V       +  +  AA   
Sbjct: 262 ELL------------------QKTDVFLIQACPYHNGTT--VLPDRVVWLDFVPAAADPS 301

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
             + +QLL +    V                G+               ++ L+  A   +
Sbjct: 302 KQEVLQLLQEKLDEVVRSLNT----------GAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

Query: 226 LNCNGWLPLDVAR 238
            + +      V++
Sbjct: 352 RSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (310), Expect = 3e-31
 Identities = 31/198 (15%), Positives = 62/198 (31%), Gaps = 53/198 (26%)

Query: 48  PLHFAAAKGHN--EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            LH+    G    E++ +L++ GA   +++           +  T L  A    +   + 
Sbjct: 141 ALHWCVGLGPEYLEMIKILVQLGASPTAKDK----------ADETPLMRAMEFRNREALD 190

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L++                     D    KS          ++ A   G + LH A L  
Sbjct: 191 LMM---------------------DTVPSKSSLR-------LDYANKQGNSHLHWAILIN 222

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS 225
           + D     +++  +V+                + PL+ +     +   + LL +    + 
Sbjct: 223 WEDVAMRFVEMGIDVNMEDNE----------HTVPLYLSVRAAMVLLTKELLQKTDVFLI 272

Query: 226 LNC---NGWLPLDVARMW 240
             C   NG   L    +W
Sbjct: 273 QACPYHNGTTVLPDRVVW 290

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  122 bits (308), Expect = 5e-31
 Identities = 38/205 (18%), Positives = 60/205 (29%), Gaps = 58/205 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
              +H AA KG  + V  L+E G     +N            G TALH A   G V   +
Sbjct: 21  MEKIHVAARKGQTDEVRRLIETGVSPTIQNR----------FGCTALHLACKFGCVDTAK 70

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
            +                                    S     +   G   +H+A +  
Sbjct: 71  YL-----------------------------------ASVGEVHSLWHGQKPIHLAVMAN 95

Query: 166 YFDCVQLLLDLHANVSAVTFHYGT---SMDLIGA--------GSTPLHFAACGGN--LKC 212
             D V  L++       +           ++           G T LH+    G   L+ 
Sbjct: 96  KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEM 155

Query: 213 CQVLLSRGASRMSLNCNGWLPLDVA 237
            ++L+  GAS  + +     PL  A
Sbjct: 156 IKILVQLGASPTAKDKADETPLMRA 180

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  120 bits (304), Expect = 2e-30
 Identities = 27/206 (13%), Positives = 55/206 (26%), Gaps = 51/206 (24%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-----NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
            +PL  A    + E + L+++     +   ++  N            G + LH+A +   
Sbjct: 174 ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK----------QGNSHLHWAILINW 223

Query: 101 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 160
                            +V    +E             D       VN   +     L++
Sbjct: 224 E----------------DVAMRFVE----------MGID-------VNMEDNEHTVPLYL 250

Query: 161 AALNGYFDCVQLLLDLHA--NVSAVTFHYG-TSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
           +         + LL       + A  +H G T +         +  AA     +  Q+L 
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 218 SRGASRMSLNCNGWLPLDVARMWGRH 243
            +    +     G       +     
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAP 336

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 98.8 bits (247), Expect = 7e-23
 Identities = 31/199 (15%), Positives = 52/199 (26%), Gaps = 72/199 (36%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
             P+H A      ++V  L+E   +                 G+                
Sbjct: 85  QKPIHLAVMANKTDLVVALVEGAKER----------------GQMPESLLNECDER---- 124

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
                       EV                 +          +     G TALH     G
Sbjct: 125 ------------EVN----------------EIG-------SHVKHCKGQTALHWCVGLG 149

Query: 166 --YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
             Y + +++L+ L A+ +A                TPL  A    N +   +++    S+
Sbjct: 150 PEYLEMIKILVQLGASPTAKDKA----------DETPLMRAMEFRNREALDLMMDTVPSK 199

Query: 224 MSLNCN-----GWLPLDVA 237
            SL  +     G   L  A
Sbjct: 200 SSLRLDYANKQGNSHLHWA 218

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 89.5 bits (223), Expect = 1e-19
 Identities = 22/185 (11%), Positives = 37/185 (20%), Gaps = 67/185 (36%)

Query: 62  ALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFE 118
           ++      +    +                +H AA  G    +R ++             
Sbjct: 4   SMTDFPKLNRIKSDD----------ENMEKIHVAARKGQTDEVRRLIETGVS-------- 45

Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA 178
                                              G TALH+A   G  D  + L  +  
Sbjct: 46  ----------------------------PTIQNRFGCTALHLACKFGCVDTAKYLASVGE 77

Query: 179 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR 238
             S               G  P+H A           L+            G +P  +  
Sbjct: 78  VHSLWH------------GQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLN 119

Query: 239 MWGRH 243
                
Sbjct: 120 ECDER 124

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 18/103 (17%)

Query: 140 QSALSKF----VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG 195
             +++ F      K+ D  +  +H+AA  G  D V+ L++   + +              
Sbjct: 2   PGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRF--------- 52

Query: 196 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDVA 237
            G T LH A   G +   + L S G      +  +G  P+ +A
Sbjct: 53  -GCTALHLACKFGCVDTAKYLASVGE---VHSLWHGQKPIHLA 91

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  134 bits (339), Expect = 2e-35
 Identities = 47/196 (23%), Positives = 74/196 (37%), Gaps = 60/196 (30%)

Query: 46  NSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
              L  AA  G+  +++ALL     + ++ +              T LH AA    VR +
Sbjct: 25  KDELLEAARSGNEEKLMALLTPLNVNCHASDG----------RKSTPLHLAAGYNRVRIV 74

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
           +L++   AD                                    V+    GG+  LH A
Sbjct: 75  QLLLQHGAD------------------------------------VHAKDKGGLVPLHNA 98

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
              G+++  +LLL   A V+A+               TPLH AA    ++ C +LLS GA
Sbjct: 99  CSYGHYEVTELLLKHGACVNAMDLW----------QFTPLHEAASKNRVEVCSLLLSHGA 148

Query: 222 SRMSLNCNGWLPLDVA 237
               +NC+G   +D+A
Sbjct: 149 DPTLVNCHGKSAVDMA 164

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  123 bits (311), Expect = 1e-31
 Identities = 44/235 (18%), Positives = 72/235 (30%), Gaps = 68/235 (28%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
           N  G SA    +  A                               L  AA +     V 
Sbjct: 154 NCHGKSA----VDMAPTPELRERLTYEFK--------------GHSLLQAAREADLAKVK 195

Query: 63  LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT 122
             L        +            S  TALH A  + H +               +V   
Sbjct: 196 KTLALEIINFKQPQ----------SHETALHCAVASLHPKRK-------------QVAEL 232

Query: 123 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 182
            +   +G         +       VN+     +T LH+AA   + D +++L    A ++A
Sbjct: 233 LLR--KG--------AN-------VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275

Query: 183 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           +             G T LH AA  G+L+ C++LLS G+    ++  G+    + 
Sbjct: 276 LDSL----------GQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMG 320

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  122 bits (308), Expect = 4e-31
 Identities = 48/206 (23%), Positives = 69/206 (33%), Gaps = 57/206 (27%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH AA+K   E+ +LLL +GAD    N            G++A+  A          
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNC----------HGKSAVDMAPTPELR---- 170

Query: 106 LVVADFVPSVPFEVMNTQIEGD-------RGDGSSVK----SKCDQSALSKFVNKAADGG 154
                       E +  + +G          D + VK     +           K     
Sbjct: 171 ------------ERLTYEFKGHSLLQAAREADLAKVKKTLALEII-------NFKQPQSH 211

Query: 155 ITALHMAALNGYF---DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
            TALH A  + +       +LLL   ANV+                 TPLH AA   +  
Sbjct: 212 ETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD----------FMTPLHVAAERAHND 261

Query: 212 CCQVLLSRGASRMSLNCNGWLPLDVA 237
             +VL   GA   +L+  G   L  A
Sbjct: 262 VMEVLHKHGAKMNALDSLGQTALHRA 287

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (303), Expect = 2e-30
 Identities = 43/217 (19%), Positives = 62/217 (28%), Gaps = 69/217 (31%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
             PLH A + GH E+  LLL++GA VN+ +              T LH AA    V    
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACVNAMDL----------WQFTPLHEAASKNRVEVCS 141

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++   AD                                           G +A+ MA 
Sbjct: 142 LLLSHGAD------------------------------------PTLVNCHGKSAVDMAP 165

Query: 163 LNGYFDCVQLLLD----LHANVSAVTFHYGTSMDLI--GA--------GSTPLHFAACGG 208
                + +         L A   A           +              T LH A    
Sbjct: 166 TPELRERLTYEFKGHSLLQA---AREADLAKVKKTLALEIINFKQPQSHETALHCAVASL 222

Query: 209 ---NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
                +  ++LL +GA+    N +   PL VA     
Sbjct: 223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAH 259

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (293), Expect = 4e-29
 Identities = 46/216 (21%), Positives = 68/216 (31%), Gaps = 70/216 (32%)

Query: 14  LVSAARDGDFVEAKMLL-----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENG 68
           L+ AAR G+  +   LL     +C+   A        ++PLH AA      IV LLL++G
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCH---AS-DGRK--STPLHLAAGYNRVRIVQLLLQHG 81

Query: 69  ADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIE 125
           ADV++++            G   LH A   GH     L++   A                
Sbjct: 82  ADVHAKDK----------GGLVPLHNACSYGHYEVTELLLKHGAC--------------- 116

Query: 126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF 185
                                VN       T LH AA     +   LLL   A+ + V  
Sbjct: 117 ---------------------VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

Query: 186 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           H          G + +  A      +         +
Sbjct: 156 H----------GKSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  114 bits (288), Expect = 2e-28
 Identities = 48/218 (22%), Positives = 68/218 (31%), Gaps = 69/218 (31%)

Query: 10  SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN---EIVALLLE 66
            G  L+ AAR+ D  + K  L       K        + LH A A  H    ++  LLL 
Sbjct: 178 KGHSLLQAAREADLAKVKKTLALEIINFKQPQSH--ETALHCAVASLHPKRKQVAELLLR 235

Query: 67  NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQ 123
            GA+VN +N              T LH AA   H   + ++    A              
Sbjct: 236 KGANVNEKNK----------DFMTPLHVAAERAHNDVMEVLHKHGAK------------- 272

Query: 124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAV 183
                                  +N     G TALH AAL G+    +LLL   ++ S +
Sbjct: 273 -----------------------MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII 309

Query: 184 TFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           +            G T           +  Q +LS   
Sbjct: 310 SLQ----------GFTAAQMGN-----EAVQQILSEST 332

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.9 bits (237), Expect = 2e-21
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 66/167 (39%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PLH AA + HN+++ +L ++GA +N+ +            G+TALH AA+ GH++  R
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKHGAKMNALDS----------LGQTALHRAALAGHLQTCR 297

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++   +D                                     +  +  G TA  M  
Sbjct: 298 LLLSYGSD------------------------------------PSIISLQGFTAAQMGN 321

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
                + VQ +L     +                    L  A+  G+
Sbjct: 322 -----EAVQQILSESTPMRTSD------------VDYRLLEASKAGD 351

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.4 bits (228), Expect = 2e-20
 Identities = 34/183 (18%), Positives = 55/183 (30%), Gaps = 53/183 (28%)

Query: 56  GHN-EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPS 114
           G   +    L +  A              +Y   +  L  AA +G+       +   +  
Sbjct: 1   GEFGKSALDLADPSAKAVLTG--------EY--KKDELLEAARSGN----EEKLMALL-- 44

Query: 115 VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 174
                                   +        + +     T LH+AA       VQLLL
Sbjct: 45  -------------------TPLNVN-------CHASDGRKSTPLHLAAGYNRVRIVQLLL 78

Query: 175 DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 234
              A+V A              G  PLH A   G+ +  ++LL  GA   +++   + PL
Sbjct: 79  QHGADVHAKDKG----------GLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPL 128

Query: 235 DVA 237
             A
Sbjct: 129 HEA 131

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (333), Expect = 3e-35
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 61/195 (31%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           ++PL  A   G  + V LLL++GA V   +              + +H AA  GHV C+ 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESD-----------LASPIHEAARRGHVECVN 174

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++    +                                    ++       T L++A 
Sbjct: 175 SLIAYGGN------------------------------------IDHKISHLGTPLYLAC 198

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
            N    CV+ LL+  A+V+                 +PLH      + +   +L+  GA 
Sbjct: 199 ENQQRACVKKLLESGADVNQGKG-----------QDSPLHAVVRTASEELACLLMDFGAD 247

Query: 223 RMSLNCNGWLPLDVA 237
             + N  G  P+++ 
Sbjct: 248 TQAKNAEGKRPVELV 262

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  131 bits (331), Expect = 6e-35
 Identities = 43/194 (22%), Positives = 70/194 (36%), Gaps = 60/194 (30%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           SP+H AA  GH   +  L+  G  VN                 + LH A + GH+ C+++
Sbjct: 61  SPMHEAAIHGHQLSLRNLISQGWAVNIITA----------DHVSPLHEACLGGHLSCVKI 110

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++   A                                     VN       T L  A +
Sbjct: 111 LLKHGAQ------------------------------------VNGVTADWHTPLFNACV 134

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
           +G +DCV LLL   A+V   +             ++P+H AA  G+++C   L++ G + 
Sbjct: 135 SGSWDCVNLLLQHGASVQPESD-----------LASPIHEAARRGHVECVNSLIAYGGNI 183

Query: 224 MSLNCNGWLPLDVA 237
                +   PL +A
Sbjct: 184 DHKISHLGTPLYLA 197

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  128 bits (325), Expect = 4e-34
 Identities = 45/197 (22%), Positives = 62/197 (31%), Gaps = 65/197 (32%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            SPLH A   GH   V +LL++GA VN                 T L  A V+G   C+ 
Sbjct: 93  VSPLHEACLGGHLSCVKILLKHGAQVNGVTA----------DWHTPLFNACVSGSWDCVN 142

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++   A                                     V   +D   + +H AA
Sbjct: 143 LLLQHGAS------------------------------------VQPESDLA-SPIHEAA 165

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
             G+ +CV  L+    N+     H            TPL+ A       C + LL  GA 
Sbjct: 166 RRGHVECVNSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVKKLLESGA- 214

Query: 223 RMSLN--CNGWLPLDVA 237
              +N       PL   
Sbjct: 215 --DVNQGKGQDSPLHAV 229

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  116 bits (293), Expect = 1e-29
 Identities = 34/180 (18%), Positives = 52/180 (28%), Gaps = 61/180 (33%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            SP+H AA +GH E V  L+  G +++ +               T L+ A  N    C++
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKIS----------HLGTPLYLACENQQRACVK 207

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   AD                                    VN+      + LH   
Sbjct: 208 KLLESGAD------------------------------------VNQGKGQD-SPLHAVV 230

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
                +   LL+D  A+  A              G  P+        L     L   GAS
Sbjct: 231 RTASEELACLLMDFGADTQAKNAE----------GKRPVELVPPESPLAQL-FLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (281), Expect = 5e-28
 Identities = 31/186 (16%), Positives = 57/186 (30%), Gaps = 55/186 (29%)

Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF 111
            ++  H+   + L+  G+ + S +          + G          G            
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGG-----MDGSKPAGPRDFPGIR---------- 46

Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
                                          LS  +   A    + +H AA++G+   ++
Sbjct: 47  ------------------------------LLSNPLMGDAVSDWSPMHEAAIHGHQLSLR 76

Query: 172 LLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW 231
            L+     V+ +T              +PLH A  GG+L C ++LL  GA    +  +  
Sbjct: 77  NLISQGWAVNIITAD----------HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWH 126

Query: 232 LPLDVA 237
            PL  A
Sbjct: 127 TPLFNA 132

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  111 bits (280), Expect = 7e-28
 Identities = 42/228 (18%), Positives = 66/228 (28%), Gaps = 72/228 (31%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
            +       +  L+           K     G   P       G       LL N    +
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGS-KPAGPRDFPGI-----RLLSNPLMGD 55

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRG 129
           + +              + +H AA++GH   +R ++                        
Sbjct: 56  AVS------------DWSPMHEAAIHGHQLSLRNLISQGWA------------------- 84

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 189
                            VN      ++ LH A L G+  CV++LL   A V+ VT     
Sbjct: 85  -----------------VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTAD--- 124

Query: 190 SMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
                    TPL  A   G+  C  +LL  GAS +    +   P+  A
Sbjct: 125 -------WHTPLFNACVSGSWDCVNLLLQHGAS-VQPESDLASPIHEA 164

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 22/137 (16%), Positives = 32/137 (23%), Gaps = 53/137 (38%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PL+ A        V  LLE+GADVN                 + LH            L+
Sbjct: 193 PLYLACENQQRACVKKLLESGADVNQGKG-----------QDSPLHAVVRTASEELACLL 241

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                           G   + +    
Sbjct: 242 MDFGAD------------------------------------TQAKNAEGKRPVELVPPE 265

Query: 165 GYFDCVQLLLDLH-ANV 180
                 QL L+   A++
Sbjct: 266 S--PLAQLFLEREGASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 160 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 219
           M + + +      L+   ++++++       MD    GS P       G       LLS 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMASMD-GKQGGMD----GSKPAGPRDFPGIR-----LLSN 50

Query: 220 GASRMSLNCNGWLPLDVA 237
               M    + W P+  A
Sbjct: 51  PL--MGDAVSDWSPMHEA 66

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 4/27 (14%), Positives = 7/27 (25%), Gaps = 1/27 (3%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVN 72
             P+     +        L   GA + 
Sbjct: 256 KRPVELVPPESP-LAQLFLEREGASLP 281

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (327), Expect = 7e-35
 Identities = 45/191 (23%), Positives = 68/191 (35%), Gaps = 50/191 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH A       +V LL+  GA   + +            G+TA H A  +    C+R +
Sbjct: 49  PLHLAVITTLPSVVRLLVTAGASPMALDR----------HGQTAAHLACEHRSPTCLRAL 98

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF-VNKAADGGITALHMAALNGY 166
           +                              D +A     +      G+TALH+A     
Sbjct: 99  L------------------------------DSAAPGTLDLEARNYDGLTALHVAVNTEC 128

Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
            + VQLLL+  A++ AV             G +PL  A    +L   Q+LL  GA+  + 
Sbjct: 129 QETVQLLLERGADIDAVDIKS---------GRSPLIHAVENNSLSMVQLLLQHGANVNAQ 179

Query: 227 NCNGWLPLDVA 237
             +G   L  A
Sbjct: 180 MYSGSSALHSA 190

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (315), Expect = 4e-33
 Identities = 48/204 (23%), Positives = 68/204 (33%), Gaps = 64/204 (31%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA----DVNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
            +  H A        +  LL++ A    D+ +RNY           G TALH A      
Sbjct: 80  QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY----------DGLTALHVAVNTECQ 129

Query: 102 RCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITA 157
             ++L++   AD                                    ++      G + 
Sbjct: 130 ETVQLLLERGAD------------------------------------IDAVDIKSGRSP 153

Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
           L  A  N     VQLLL   ANV+A  +           GS+ LH A+  G L   + L+
Sbjct: 154 LIHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVRTLV 203

Query: 218 SRGASRMSLNCNGWLPLDVARMWG 241
             GA     NC+   PL VAR   
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRR 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  122 bits (308), Expect = 3e-32
 Identities = 41/178 (23%), Positives = 59/178 (33%), Gaps = 58/178 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH A      E V LLLE GAD+++          D  SGR+ L  A  N  +  ++L+
Sbjct: 119 ALHVAVNTECQETVQLLLERGADIDAV---------DIKSGRSPLIHAVENNSLSMVQLL 169

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A+                                    VN     G +ALH A+  
Sbjct: 170 LQHGAN------------------------------------VNAQMYSGSSALHSASGR 193

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
           G    V+ L+   A+ S    H            TPL  A     +   +   +R AS
Sbjct: 194 GLLPLVRTLVRSGADSSLKNCH----------NDTPLMVARSRRVIDILRGKATRPAS 241

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  114 bits (287), Expect = 3e-29
 Identities = 42/207 (20%), Positives = 66/207 (31%), Gaps = 74/207 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLLE----NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
           ++PLH A  +G+   V  L+      G +++  N             +T LH A +    
Sbjct: 10  DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------LRQTPLHLAVITTLP 59

Query: 102 RCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL 158
             +RL+V   A                                            G TA 
Sbjct: 60  SVVRLLVTAGAS------------------------------------PMALDRHGQTAA 83

Query: 159 HMAALNGYFDCVQLLLD----LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
           H+A  +    C++ LLD       ++ A  +           G T LH A      +  Q
Sbjct: 84  HLACEHRSPTCLRALLDSAAPGTLDLEARNYD----------GLTALHVAVNTECQETVQ 133

Query: 215 VLLSRGASRMSLN----CNGWLPLDVA 237
           +LL RGA    ++     +G  PL  A
Sbjct: 134 LLLERGA---DIDAVDIKSGRSPLIHA 157

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 89.0 bits (222), Expect = 3e-20
 Identities = 31/154 (20%), Positives = 49/154 (31%), Gaps = 43/154 (27%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           G T LH A V G++  +  +                +   +  G               +
Sbjct: 9   GDTPLHIAVVQGNLPAVHRL----------------VNLFQQGGRE-------------L 39

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           +   +   T LH+A +      V+LL+   A+  A+  H          G T  H A   
Sbjct: 40  DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRH----------GQTAAHLACEH 89

Query: 208 GNLKCCQVLLSRGASRMSL----NCNGWLPLDVA 237
            +  C + LL   A         N +G   L VA
Sbjct: 90  RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 14/95 (14%)

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLH----ANVSAVTFHYGTSMDLIGAGSTPLH 202
             +A + G T LH+A + G    V  L++L       +                  TPLH
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL----------RQTPLH 51

Query: 203 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
            A         ++L++ GAS M+L+ +G     +A
Sbjct: 52  LAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA 86

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.3 bits (176), Expect = 3e-14
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           +S LH A+ +G   +V  L+ +GAD + +N              T L  A     +  +R
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNC----------HNDTPLMVARSRRVIDILR 233

Query: 106 L 106
            
Sbjct: 234 G 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 5/24 (20%), Positives = 11/24 (45%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA 69
           ++PL  A ++   +I+       A
Sbjct: 217 DTPLMVARSRRVIDILRGKATRPA 240

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  127 bits (321), Expect = 8e-35
 Identities = 56/200 (28%), Positives = 82/200 (41%), Gaps = 59/200 (29%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
              L  AA  G ++ V +L+ NGADVN+ +           SG T LH AA NGH+  + 
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGADVNAEDA----------SGWTPLHLAAFNGHLEIVE 64

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           +++   AD                                    VN     G+T L +AA
Sbjct: 65  VLLKNGAD------------------------------------VNAVDHAGMTPLRLAA 88

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
           L G+ + V++LL   A+V+A              G TPLH AA  G+L+  +VLL  GA 
Sbjct: 89  LFGHLEIVEVLLKNGADVNANDME----------GHTPLHLAAMFGHLEIVEVLLKNGAD 138

Query: 223 RMSLNCNGWLPLDVARMWGR 242
             + +  G    D++   G 
Sbjct: 139 VNAQDKFGKTAFDISIDNGN 158

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  112 bits (284), Expect = 1e-29
 Identities = 47/174 (27%), Positives = 70/174 (40%), Gaps = 59/174 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA  GH EIV +LL+NGADVN+ ++          +G T L  AA+ GH+  + ++
Sbjct: 50  PLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AGMTPLRLAALFGHLEIVEVL 99

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                    VN     G T LH+AA+ 
Sbjct: 100 LKNGAD------------------------------------VNANDMEGHTPLHLAAMF 123

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
           G+ + V++LL   A+V+A              G T    +   GN    ++L  
Sbjct: 124 GHLEIVEVLLKNGADVNAQDKF----------GKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.6 bits (208), Expect = 4e-19
 Identities = 45/179 (25%), Positives = 67/179 (37%), Gaps = 58/179 (32%)

Query: 68  GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 124
           G+  +  +       +D       L  AA  G    +R+++   AD              
Sbjct: 3   GSHHHHHH------GSD---LGKKLLEAARAGRDDEVRILMANGAD-------------- 39

Query: 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 184
                                 VN     G T LH+AA NG+ + V++LL   A+V+AV 
Sbjct: 40  ----------------------VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVD 77

Query: 185 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
                       G TPL  AA  G+L+  +VLL  GA   + +  G  PL +A M+G  
Sbjct: 78  HA----------GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHL 126

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  128 bits (324), Expect = 2e-34
 Identities = 54/228 (23%), Positives = 85/228 (37%), Gaps = 50/228 (21%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN  +Y
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNLDDY 67

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS 136
                     SG T  H A   G++  ++ +                   DR     +  
Sbjct: 68  PDD-------SGWTPFHIACSVGNLEVVKSLY------------------DRPLKPDL-- 100

Query: 137 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA 196
                      NK  + G+T LH+A    +F+  Q L++  A+V                
Sbjct: 101 -----------NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKF---------- 139

Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSL-NCNGWLPLDVARMWGRH 243
              PLH AA  G+LK  ++L   G S ++  +  GW PL  A   G  
Sbjct: 140 NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 187

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  116 bits (294), Expect = 3e-30
 Identities = 37/195 (18%), Positives = 60/195 (30%), Gaps = 53/195 (27%)

Query: 46  NSPLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           N PLH A  +     V  LL    + +  ++            GR  LH++         
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ----------DGRIPLHWSVSFQAH--- 49

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
                        E+ +  +        +V             +   D G T  H+A   
Sbjct: 50  -------------EITSFLLS----KMENVNLD----------DYPDDSGWTPFHIACSV 82

Query: 165 GYFDCVQLLLDLH--ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
           G  + V+ L D     +++ +T            G T LH A      +  Q L+  GAS
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQ----------GVTCLHLAVGKKWFEVSQFLIENGAS 132

Query: 223 RMSLNCNGWLPLDVA 237
               +    +PL  A
Sbjct: 133 VRIKDKFNQIPLHRA 147

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  114 bits (287), Expect = 3e-29
 Identities = 38/197 (19%), Positives = 56/197 (28%), Gaps = 63/197 (31%)

Query: 48  PLHFAAAKGHNEIVALLLEN--GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           P H A + G+ E+V  L +     D+N               G T LH A         +
Sbjct: 75  PFHIACSVGNLEVVKSLYDRPLKPDLNKITN----------QGVTCLHLAVGKKWFEVSQ 124

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   A                                     V          LH AA
Sbjct: 125 FLIENGAS------------------------------------VRIKDKFNQIPLHRAA 148

Query: 163 LNGYFDCVQLLLDLHAN-VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-G 220
             G    ++LL  L  + V+               G TPL  A   G+     +L+ + G
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYG 198

Query: 221 ASRMSLNCNGWLPLDVA 237
           A    ++  G    DVA
Sbjct: 199 AEYDLVDNKGAKAEDVA 215

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  104 bits (263), Expect = 5e-26
 Identities = 34/172 (19%), Positives = 50/172 (29%), Gaps = 56/172 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH A  K   E+   L+ENGA V  ++   Q            LH AA  G +      
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQ----------IPLHRAASVGSL------ 153

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                     +++                K         VN     G T L  A   G+ 
Sbjct: 154 ----------KLIELLCG---------LGKSA-------VNWQDKQGWTPLFHALAEGHG 187

Query: 168 DCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
           D   LL++ + A    V             G+     A    N +  +  L+
Sbjct: 188 DAAVLLVEKYGAEYDLVDNK----------GAKAEDVAL---NEQVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.0 bits (196), Expect = 5e-17
 Identities = 24/152 (15%), Positives = 38/152 (25%), Gaps = 41/152 (26%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
               LH A +          V + +                                  +
Sbjct: 2   SNYPLHQACMENEFF----KVQELL---------------------HSKPSL-------L 29

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
            +    G   LH +      +    LL    NV+   +   +       G TP H A   
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDS-------GWTPFHIACSV 82

Query: 208 GNLKCCQVLLSR--GASRMSLNCNGWLPLDVA 237
           GNL+  + L  R        +   G   L +A
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  128 bits (323), Expect = 3e-34
 Identities = 45/236 (19%), Positives = 76/236 (32%), Gaps = 77/236 (32%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
            +   +DG             D     ++Y T      P   AA K   + ++ LLE   
Sbjct: 19  YLIEWKDGHSPSWVPSSYIAADVV---SEYET------PWWTAARKADEQALSQLLE-DR 68

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
           DV++ +           +GRTAL F A  G  +C+RL+    AD                
Sbjct: 69  DVDAVDE----------NGRTALLFVAGLGSDKCVRLLAEAGAD---------------- 102

Query: 127 DRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF 185
                               ++ +   GG+TALHMAA     + V+ L++L A++     
Sbjct: 103 --------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVED- 141

Query: 186 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
                      G T L  A            +  G     +     + +   +++ 
Sbjct: 142 ---------ERGLTALELAREILKTTPKGNPMQFGR---RIGLEKVINVLEGQVFE 185

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  122 bits (309), Expect = 2e-32
 Identities = 36/195 (18%), Positives = 54/195 (27%), Gaps = 56/195 (28%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
                   GH+          ADV S                T    AA     + +  +
Sbjct: 18  EYLIEWKDGHSPSWVPSSYIAADVVSE-------------YETPWWTAARKADEQALSQL 64

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                           +E             D       V+   + G TAL   A  G  
Sbjct: 65  ----------------LED-----------RD-------VDAVDENGRTALLFVAGLGSD 90

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
            CV+LL +  A++                G T LH AA     +  + L+  GA     +
Sbjct: 91  KCVRLLAEAGADLDHRDMRG---------GLTALHMAAGYVRPEVVEALVELGADIEVED 141

Query: 228 CNGWLPLDVARMWGR 242
             G   L++AR   +
Sbjct: 142 ERGLTALELAREILK 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  120 bits (304), Expect = 1e-31
 Identities = 44/221 (19%), Positives = 62/221 (28%), Gaps = 65/221 (29%)

Query: 17  AARDGDFVEAKMLL-DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN 75
           AAR  D      LL D +   A     G   + L F A  G ++ V LL E GAD++ R 
Sbjct: 52  AARKADEQALSQLLEDRDVD-AV-DENG--RTALLFVAGLGSDKCVRLLAEAGADLDHR- 106

Query: 76  YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGS 132
                   D   G TALH AA       +  +V   AD                      
Sbjct: 107 --------DMRGGLTALHMAAGYVRPEVVEALVELGAD---------------------- 136

Query: 133 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV---------SAV 183
                         +    + G+TAL +A            +     +            
Sbjct: 137 --------------IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ 182

Query: 184 TFHYGTSMDLI---GAGSTPLHFAACGGNLKCCQVLLSRGA 221
            F Y    +++   G G    +         C  V     A
Sbjct: 183 VFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVA 223

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 94.2 bits (235), Expect = 4e-22
 Identities = 32/215 (14%), Positives = 59/215 (27%), Gaps = 52/215 (24%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           +  G +A    L+  A  G     ++L     D +    +    G   + LH AA     
Sbjct: 74  DENGRTA----LLFVAGLGSDKCVRLLAEAGADLD---HRDMRGG--LTALHMAAGYVRP 124

Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 115
           E+V  L+E GAD+   +            G TAL  A            +          
Sbjct: 125 EVVEALVELGADIEVEDE----------RGLTALELAREILKTTPKGNPMQFGRR----- 169

Query: 116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
                   I  ++          + + + + + +    G    ++       DC  +   
Sbjct: 170 --------IGLEKVINVLEGQVFEYAEVDE-IVEKRGKGKDVEYLVRWKDGGDCEWVKGV 220

Query: 176 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
             A   A  +               L +A     +
Sbjct: 221 HVAEDVAKDY------------EDGLEYAVAESVI 243

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.5 bits (158), Expect = 6e-12
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 14/90 (15%)

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           ++ A  G     +   +G+         + A+V +                TP   AA  
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS-------------EYETPWWTAARK 55

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
            + +    LL       +++ NG   L   
Sbjct: 56  ADEQALSQLLE-DRDVDAVDENGRTALLFV 84

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  124 bits (314), Expect = 4e-34
 Identities = 39/202 (19%), Positives = 65/202 (32%), Gaps = 60/202 (29%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGA   +              G + LH AA  GH    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWL-----------GTSPLHLAAQYGHFSTT 50

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
            +++                                          +       T LHMA
Sbjct: 51  EVLLRAGVS------------------------------------RDARTKVDRTPLHMA 74

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           A  G+ + V++LL   A+V+A                T LH+A    + +  ++L+  GA
Sbjct: 75  ASEGHANIVEVLLKHGADVNAKDML----------KMTALHWATEHNHQEVVELLIKYGA 124

Query: 222 SRMSLNCNGWLPLDVARMWGRH 243
              + +       D++   G  
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNE 146

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  107 bits (269), Expect = 1e-27
 Identities = 46/206 (22%), Positives = 68/206 (33%), Gaps = 62/206 (30%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ AAR G   E ++L+            G   SPLH AA  GH     +LL  G   ++
Sbjct: 6   LLEAARAGQDDEVRILMANGAPFTT-DWLG--TSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
           R              RT LH AA  GH   + +++   AD                    
Sbjct: 63  RTK----------VDRTPLHMAASEGHANIVEVLLKHGAD-------------------- 92

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                           VN      +TALH A  + + + V+LL+   A+V   +      
Sbjct: 93  ----------------VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKF---- 132

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVL 216
                   T    +   GN    ++L
Sbjct: 133 ------CKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 12/86 (13%)

Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
           D G   L  AA  G  D V++L+   A  +               G++PLH AA  G+  
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWL-----------GTSPLHLAAQYGHFS 48

Query: 212 CCQVLLSRGASRMSLNCNGWLPLDVA 237
             +VLL  G SR +       PL +A
Sbjct: 49  TTEVLLRAGVSRDARTKVDRTPLHMA 74

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  127 bits (321), Expect = 5e-34
 Identities = 51/208 (24%), Positives = 76/208 (36%), Gaps = 60/208 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           ++ LH AA KGH E+V  LL NG  DVN ++            G T + +A    HV  +
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD----------GGWTPMIWATEYKHVDLV 127

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
           +L++   +D                                    +N   +     LH A
Sbjct: 128 KLLLSKGSD------------------------------------INIRDNEENICLHWA 151

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           A +G  D  ++LL    ++ AV  H          G +PLH AA      C  + LSR +
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDS 201

Query: 222 SRMSLNCNGWLPLDVARMWGRHWLEPLL 249
                N  G  PL  A +  + W    +
Sbjct: 202 DVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  123 bits (312), Expect = 8e-33
 Identities = 43/196 (21%), Positives = 74/196 (37%), Gaps = 60/196 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            SPLH AA  GH +I  +L++ GA++++ +             RT L  AA N H+  ++
Sbjct: 12  RSPLHAAAEAGHVDICHMLVQAGANIDTCSE----------DQRTPLMEAAENNHLEAVK 61

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   A                                     V+     G T LH+AA
Sbjct: 62  YLIKAGAL------------------------------------VDPKDAEGSTCLHLAA 85

Query: 163 LNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
             G+++ VQ LL     +V+               G TP+ +A    ++   ++LLS+G+
Sbjct: 86  KKGHYEVVQYLLSNGQMDVNCQDDG----------GWTPMIWATEYKHVDLVKLLLSKGS 135

Query: 222 SRMSLNCNGWLPLDVA 237
                +    + L  A
Sbjct: 136 DINIRDNEENICLHWA 151

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  123 bits (311), Expect = 1e-32
 Identities = 45/196 (22%), Positives = 72/196 (36%), Gaps = 52/196 (26%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PL  AA   H E V  L++ GA V+ ++            G T LH AA  GH   ++ +
Sbjct: 47  PLMEAAENNHLEAVKYLIKAGALVDPKDA----------EGSTCLHLAAKKGHYEVVQYL 96

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
           +                                S     VN   DGG T +  A    + 
Sbjct: 97  L--------------------------------SNGQMDVNCQDDGGWTPMIWATEYKHV 124

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
           D V+LLL   ++++                +  LH+AA  G +   ++LL+      ++N
Sbjct: 125 DLVKLLLSKGSDINIRDNE----------ENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174

Query: 228 CNGWLPLDVARMWGRH 243
            +G  PL +A    R+
Sbjct: 175 IHGDSPLHIAARENRY 190

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  115 bits (292), Expect = 6e-30
 Identities = 34/177 (19%), Positives = 57/177 (32%), Gaps = 59/177 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           P+ +A    H ++V LLL  G+D+N R+                LH+AA +G V    ++
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSDINIRDN----------EENICLHWAAFSGCVDIAEIL 163

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +    D                                    ++     G + LH+AA  
Sbjct: 164 LAAKCD------------------------------------LHAVNIHGDSPLHIAARE 187

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
             +DCV L L   ++V+               G TPL  A+    +     +     
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKE----------GETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.0 bits (222), Expect = 2e-20
 Identities = 26/137 (18%), Positives = 39/137 (28%), Gaps = 49/137 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N  LH+AA  G  +I  +LL    D+++ N            G + LH AA      C+ 
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDLHAVNI----------HGDSPLHIAARENRYDCVV 194

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L +   +D                                    V      G T L  A+
Sbjct: 195 LFLSRDSD------------------------------------VTLKNKEGETPLQCAS 218

Query: 163 LNGYFDCVQLLLDLHAN 179
           LN        +     +
Sbjct: 219 LNSQVWSALQMSKALQD 235

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.3 bits (215), Expect = 2e-19
 Identities = 38/175 (21%), Positives = 57/175 (32%), Gaps = 64/175 (36%)

Query: 69  ADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIE 125
            +    +           + R+ LH AA  GHV    ++V   A+               
Sbjct: 2   MNFKMEHQ----------NKRSPLHAAAEAGHVDICHMLVQAGAN--------------- 36

Query: 126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTF 185
                                ++  ++   T L  AA N + + V+ L+   A V     
Sbjct: 37  ---------------------IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75

Query: 186 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC---NGWLPLDVA 237
                      GST LH AA  G+ +  Q LLS G     +NC    GW P+  A
Sbjct: 76  E----------GSTCLHLAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWTPMIWA 118

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  128 bits (324), Expect = 6e-34
 Identities = 31/193 (16%), Positives = 58/193 (30%), Gaps = 61/193 (31%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
             PLH AA     +IV +LL +G D +  +            G TAL++A  +G+++ ++
Sbjct: 63  EFPLHQAATLEDTKIVKILLFSGLDDSQFDD----------KGNTALYYAVDSGNMQTVK 112

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN-KAADGGITALHMA 161
           L V                                         +      G  T+ + A
Sbjct: 113 LFVKKNWR------------------------------------LMFYGKTGWKTSFYHA 136

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
            +      V   L    +   +               + +H     G++    +LL    
Sbjct: 137 VMLNDVSIVSYFLSEIPSTFDLAI-----------LLSCIHITIKNGHVDMMILLLDYMT 185

Query: 222 SRMSLNCNGWLPL 234
           S  + N   ++P 
Sbjct: 186 STNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  125 bits (316), Expect = 8e-33
 Identities = 29/193 (15%), Positives = 52/193 (26%), Gaps = 61/193 (31%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
             ++A A  +  +V  LL  GA  N                   LH AA     + ++++
Sbjct: 34  ASYYAIADNNVRLVCTLLNAGALKNLLE------------NEFPLHQAATLEDTKIVKIL 81

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +    D                                     ++  D G TAL+ A  +
Sbjct: 82  LFSGLD------------------------------------DSQFDDKGNTALYYAVDS 105

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G    V+L +  +  +       G          T  + A    ++      LS   S  
Sbjct: 106 GNMQTVKLFVKKNWRLMFYG-KTG--------WKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

Query: 225 SLNCNGWLPLDVA 237
            L       + + 
Sbjct: 157 DLA-ILLSCIHIT 168

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (297), Expect = 3e-30
 Identities = 22/177 (12%), Positives = 48/177 (27%), Gaps = 54/177 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N+ L++A   G+ + V L ++    +      G          +T+ + A +   V  + 
Sbjct: 96  NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG---------WKTSFYHAVMLNDVSIVS 146

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
             +                                              ++ +H+   NG
Sbjct: 147 YFL------------------SEIP----------------STFDLAILLSCIHITIKNG 172

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGA 221
           + D + LLLD   + +                  P +  A    +++  Q L     
Sbjct: 173 HVDMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  113 bits (285), Expect = 2e-28
 Identities = 20/192 (10%), Positives = 43/192 (22%), Gaps = 62/192 (32%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
           G  +  + A       IV+  L                        + +H    NGHV  
Sbjct: 128 GWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-----------LLSCIHITIKNGHVDM 176

Query: 104 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAA 162
           + L++                  D                    N          + +A 
Sbjct: 177 MILLL------------------DYM--------TS-------TNTNNSLLFIPDIKLAI 203

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
            N   + +Q L     N+                  +         + +  ++++ +   
Sbjct: 204 DNKDIEMLQALFKYDINI-----------------YSANLENVLLDDAEIAKMIIEKHVE 246

Query: 223 RMSLNCNGWLPL 234
             S +    L +
Sbjct: 247 YKSDSYTKDLDI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  106 bits (268), Expect = 4e-26
 Identities = 28/190 (14%), Positives = 53/190 (27%), Gaps = 58/190 (30%)

Query: 49  LHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
           L        ++ +   L +  D    +            G +A ++A  + +VR +  + 
Sbjct: 4   LS-RINTWKSKQLKSFL-SSKDTFKADV----------HGHSASYYAIADNNVRLVCTL- 50

Query: 109 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168
                                             L+    K        LH AA      
Sbjct: 51  ----------------------------------LNAGALKNLLENEFPLHQAATLEDTK 76

Query: 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 228
            V++LL    + S               G+T L++A   GN++  ++ + +    M    
Sbjct: 77  IVKILLFSGLDDSQFDDK----------GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126

Query: 229 NGWL-PLDVA 237
            GW      A
Sbjct: 127 TGWKTSFYHA 136

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 85.7 bits (213), Expect = 7e-19
 Identities = 18/186 (9%), Positives = 43/186 (23%), Gaps = 67/186 (36%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT-ALHFAAVNGHVRCI 104
            S +H     GH +++ LLL+     N+ N                 +  A  N  +  +
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNN----------SLLFIPDIKLAIDNKDIEML 211

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +                                              +   +A     L 
Sbjct: 212 QA---------------------------------------LFKYDINIY-SANLENVLL 231

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA-SR 223
              +  +++++ H    + +                +         K  +++        
Sbjct: 232 DDAEIAKMIIEKHVEYKSDS----------YTKDLDIVKNN-----KLDEIISKNKELRL 276

Query: 224 MSLNCN 229
           M +NC 
Sbjct: 277 MYVNCV 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  127 bits (322), Expect = 1e-33
 Identities = 55/238 (23%), Positives = 84/238 (35%), Gaps = 59/238 (24%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L+ A ++ D    + LL    + N    +    G   +PLH A      +IV LLL +GA
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGANVN---FQEEEGG--WTPLHNAVQMSREDIVELLLRHGA 63

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
           D   R            +G T    AA+ G V+ ++L +   AD                
Sbjct: 64  DPVLRKK----------NGATPFLLAAIAGSVKLLKLFLSKGAD---------------- 97

Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH 186
                               VN+    G TA   AA+ G    ++ L    ANV+     
Sbjct: 98  --------------------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKT 137

Query: 187 YGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRH 243
                 L   G+T L  AA  G+++  ++LL   GA   + +  G   L  A +    
Sbjct: 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD 195

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (309), Expect = 8e-32
 Identities = 44/205 (21%), Positives = 61/205 (29%), Gaps = 68/205 (33%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N  L  A      ++V  LLE GA+VN +   G         G T LH A        + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---------GWTPLHNAVQMSREDIVE 56

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++   AD                                           G T   +AA
Sbjct: 57  LLLRHGAD------------------------------------PVLRKKNGATPFLLAA 80

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA- 221
           + G    ++L L   A+V+   F+          G T    AA  G +K  + L  RGA 
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFY----------GFTAFMEAAVYGKVKALKFLYKRGAN 130

Query: 222 ---------SRMSLNCNGWLPLDVA 237
                     +  L   G   L  A
Sbjct: 131 VNLRRKTKEDQERLRKGGATALMDA 155

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  120 bits (303), Expect = 5e-31
 Identities = 45/207 (21%), Positives = 65/207 (31%), Gaps = 55/207 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +    AA  G  + +  L + GA+VN R    +        G TAL  AA  GHV  ++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165

Query: 106 LVV----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
           +++    AD                                    VN   + G  AL  A
Sbjct: 166 ILLDEMGAD------------------------------------VNACDNMGRNALIHA 189

Query: 162 ALNGYFDC----VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
            L+           LLLD  A+V+               G TPL  A    +L   Q LL
Sbjct: 190 LLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHLGLVQRLL 239

Query: 218 SR-GASRMSLNCNGWLPLDVARMWGRH 243
            +        + +G   L +A      
Sbjct: 240 EQEHIEINDTDSDGKTALLLAVELKLK 266

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (300), Expect = 1e-30
 Identities = 46/200 (23%), Positives = 71/200 (35%), Gaps = 54/200 (27%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +P   AA  G  +++ L L  GADVN  ++           G TA   AAV G V+ ++
Sbjct: 73  ATPFLLAAIAGSVKLLKLFLSKGADVNECDF----------YGFTAFMEAAVYGKVKALK 122

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            +    A+         +N + +                       +   GG TAL  AA
Sbjct: 123 FLYKRGAN---------VNLRRKTKED-----------------QERLRKGGATALMDAA 156

Query: 163 LNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLL 217
             G+ + +++LLD   A+V+A              G   L  A    +         +LL
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLL 206

Query: 218 SRGASRMSLNCNGWLPLDVA 237
             GA        G  PL +A
Sbjct: 207 DHGADVNVRGERGKTPLILA 226

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  118 bits (299), Expect = 2e-30
 Identities = 50/237 (21%), Positives = 73/237 (30%), Gaps = 79/237 (33%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL---------DCNPCLAKYSTFGGLNSPLHFAA 53
           + +G +A     + AA  G     K L                 +    GG  + L  AA
Sbjct: 102 DFYGFTA----FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG-ATALMDAA 156

Query: 54  AKGHNEIVALLL-ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---- 108
            KGH E++ +LL E GADVN+ +            GR AL  A ++     +  +     
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDN----------MGRNALIHALLSSDDSDVEAITHLLL 206

Query: 109 ---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
              AD                                    VN   + G T L +A    
Sbjct: 207 DHGAD------------------------------------VNVRGERGKTPLILAVEKK 230

Query: 166 YFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           +   VQ LL+     ++               G T L  A      K  ++L  RGA
Sbjct: 231 HLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVELKLKKIAELLCKRGA 277

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 27/139 (19%), Positives = 41/139 (29%), Gaps = 46/139 (33%)

Query: 48  PLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
            L  A     +     I  LLL++GADVN R             G+T L  A    H+  
Sbjct: 185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHL-- 232

Query: 104 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
                          ++   +E +  +                +N     G TAL +A  
Sbjct: 233 --------------GLVQRLLEQEHIE----------------INDTDSDGKTALLLAVE 262

Query: 164 NGYFDCVQLLLDLHANVSA 182
                  +LL    A+   
Sbjct: 263 LKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.1 bits (209), Expect = 2e-18
 Identities = 32/154 (20%), Positives = 50/154 (32%), Gaps = 50/154 (32%)

Query: 88  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 144
               L  A  N  V  ++ ++   A+                                  
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGAN---------------------------------- 30

Query: 145 KFVN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
             VN +  +GG T LH A      D V+LLL   A+      +          G+TP   
Sbjct: 31  --VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKN----------GATPFLL 78

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           AA  G++K  ++ LS+GA     +  G+     A
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEA 112

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 5e-14
 Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 150 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
           AA      L  A  N   D VQ LL+  ANV+               G TPLH A     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG---------GWTPLHNAVQMSR 51

Query: 210 LKCCQVLLSRGASRMSLNCNGWLPLDVA 237
               ++LL  GA  +    NG  P  +A
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLA 79

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 7/28 (25%), Positives = 11/28 (39%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
            L  A      +I  LL + GA  +  +
Sbjct: 256 ALLLAVELKLKKIAELLCKRGASTDCGD 283

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  126 bits (319), Expect = 2e-33
 Identities = 46/202 (22%), Positives = 67/202 (33%), Gaps = 60/202 (29%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
            +PLH A +     +  +L+ N A D+++R + G           T L  AA       +
Sbjct: 91  RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT----------TPLILAARLAVEGML 140

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
             ++   AD                                    VN   D G +ALH A
Sbjct: 141 EDLINSHAD------------------------------------VNAVDDLGKSALHWA 164

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           A     D   +LL   AN                   TPL  AA  G+ +  +VLL   A
Sbjct: 165 AAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFA 214

Query: 222 SRMSLNCNGWLPLDVARMWGRH 243
           +R   +    LP D+A+    H
Sbjct: 215 NRDITDHMDRLPRDIAQERMHH 236

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  120 bits (304), Expect = 2e-31
 Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 52/190 (27%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH AA    ++    LLE  AD N ++            GRT LH A            
Sbjct: 60  ALHLAARYSRSDAAKRLLEASADANIQDN----------MGRTPLHAAVSADAQ------ 103

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                      V    I     D                ++     G T L +AA     
Sbjct: 104 ----------GVFQILIRNRATD----------------LDARMHDGTTPLILAARLAVE 137

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
             ++ L++ HA+V+AV             G + LH+AA   N+    VLL  GA++   N
Sbjct: 138 GMLEDLINSHADVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQN 187

Query: 228 CNGWLPLDVA 237
                PL +A
Sbjct: 188 NREETPLFLA 197

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  112 bits (283), Expect = 1e-28
 Identities = 31/177 (17%), Positives = 55/177 (31%), Gaps = 59/177 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PL  AA      ++  L+ + ADVN+ +            G++ALH+AA   +V    ++
Sbjct: 127 PLILAARLAVEGMLEDLINSHADVNAVDD----------LGKSALHWAAAVNNVDAAVVL 176

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A+                                     +   +   T L +AA  
Sbjct: 177 LKNGAN------------------------------------KDMQNNREETPLFLAARE 200

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           G ++  ++LLD  AN      H             P   A    +    ++L     
Sbjct: 201 GSYETAKVLLDHFANRDITD-HM---------DRLPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 99.5 bits (249), Expect = 7e-24
 Identities = 36/203 (17%), Positives = 60/203 (29%), Gaps = 61/203 (30%)

Query: 40  STFGGLNSPLHFAAAKGHNEIVALLLENGADV-NSRNYCGQVTRADYLSGRTALHFAAVN 98
           S  GG     +    +    +++  +  GA + N  +           +G TALH AA  
Sbjct: 18  SCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR----------TGETALHLAARY 67

Query: 99  GHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI 155
                 + ++   AD                                     N   + G 
Sbjct: 68  SRSDAAKRLLEASAD------------------------------------ANIQDNMGR 91

Query: 156 TALHMAALNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
           T LH A         Q+L+   A ++ A              G+TPL  AA        +
Sbjct: 92  TPLHAAVSADAQGVFQILIRNRATDLDARMHD----------GTTPLILAARLAVEGMLE 141

Query: 215 VLLSRGASRMSLNCNGWLPLDVA 237
            L++  A   +++  G   L  A
Sbjct: 142 DLINSHADVNAVDDLGKSALHWA 164

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 91.4 bits (228), Expect = 5e-21
 Identities = 24/137 (17%), Positives = 42/137 (30%), Gaps = 49/137 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            S LH+AAA  + +   +LL+NGA+ + +N              T L  AA  G     +
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNN----------REETPLFLAAREGSYETAK 207

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           +++   A+                                     +           +A 
Sbjct: 208 VLLDHFAN------------------------------------RDITDHMDRLPRDIAQ 231

Query: 163 LNGYFDCVQLLLDLHAN 179
              + D V+LL   H +
Sbjct: 232 ERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.4 bits (189), Expect = 6e-16
 Identities = 38/169 (22%), Positives = 61/169 (36%), Gaps = 40/169 (23%)

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 129
           DVN R             G T L  A+ +G          +        V++  I     
Sbjct: 2   DVNVRGP----------DGFTPLMIASCSGGGLETGNSEEEEDAP---AVISDFIYQ--- 45

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGT 189
            G+S+ ++ D++            G TALH+AA     D  + LL+  A+ +        
Sbjct: 46  -GASLHNQTDRT------------GETALHLAARYSRSDAAKRLLEASADANIQDNM--- 89

Query: 190 SMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM-SLNCNGWLPLDVA 237
                  G TPLH A         Q+L+   A+ + +   +G  PL +A
Sbjct: 90  -------GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 7/28 (25%), Positives = 12/28 (42%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN 75
           P   A  + H++IV LL       +  +
Sbjct: 226 PRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  123 bits (311), Expect = 2e-33
 Identities = 49/199 (24%), Positives = 75/199 (37%), Gaps = 61/199 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L  AAA+G  E +  LL+N  +VN++N            GRTAL      G+    R +
Sbjct: 8   ELASAAARGDLEQLTSLLQNNVNVNAQNG----------FGRTALQVMK-LGNPEIARRL 56

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A+                                     +     G   +H AA  
Sbjct: 57  LLRGAN------------------------------------PDLKDRTGFAVIHDAARA 80

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ D +Q LL+  A+V+               G+ PLH AA  G+L+  + L+   AS +
Sbjct: 81  GFLDTLQTLLEFQADVNIEDNE----------GNLPLHLAAKEGHLRVVEFLVKHTASNV 130

Query: 225 -SLNCNGWLPLDVARMWGR 242
              N  G    D+AR++GR
Sbjct: 131 GHRNHKGDTACDLARLYGR 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  107 bits (270), Expect = 1e-27
 Identities = 46/216 (21%), Positives = 72/216 (33%), Gaps = 71/216 (32%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L SAA  GD  +   LL    + N   A+ + FG   + L      G+ EI   LL  GA
Sbjct: 9   LASAAARGDLEQLTSLLQNNVNVN---AQ-NGFG--RTALQ-VMKLGNPEIARRLLLRGA 61

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
           + + ++           +G   +H AA  G +  ++ ++   AD                
Sbjct: 62  NPDLKDR----------TGFAVIHDAARAGFLDTLQTLLEFQAD---------------- 95

Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA-NVSAVTF 185
                               VN   + G   LH+AA  G+   V+ L+   A NV     
Sbjct: 96  --------------------VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135

Query: 186 HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
                      G T    A   G  +   ++ + GA
Sbjct: 136 K----------GDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.9 bits (188), Expect = 2e-16
 Identities = 31/159 (19%), Positives = 42/159 (26%), Gaps = 50/159 (31%)

Query: 88  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 144
               L  AA  G +  +  ++    +                                  
Sbjct: 5   WGNELASAAARGDLEQLTSLLQNNVN---------------------------------- 30

Query: 145 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204
             VN     G TAL +    G  +  + LL   AN                 G   +H A
Sbjct: 31  --VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRT----------GFAVIHDA 77

Query: 205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
           A  G L   Q LL   A     +  G LPL +A   G  
Sbjct: 78  ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHL 116

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 67.4 bits (166), Expect = 1e-13
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 151 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
           A+     L  AA  G  + +  LL  + NV+A              G T L      GN 
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGF----------GRTALQVMKL-GNP 50

Query: 211 KCCQVLLSRGASRMSLNCNGWLPLDVA 237
           +  + LL RGA+    +  G+  +  A
Sbjct: 51  EIARRLLLRGANPDLKDRTGFAVIHDA 77

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  125 bits (315), Expect = 2e-33
 Identities = 47/198 (23%), Positives = 76/198 (38%), Gaps = 48/198 (24%)

Query: 47  SPLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           SPL  AA +   + ++ LL   G +V+ R             G TALH AA+  ++    
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGA----------MGETALHIAALYDNLEAAM 54

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           +++    + V                                         G TALH+A 
Sbjct: 55  VLMEAAPELVFEPM-------------------------------TSELYEGQTALHIAV 83

Query: 163 LNGYFDCVQLLLDLHANVSA---VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR 219
           +N   + V+ LL   A+VSA    +  +    +LI  G  PL FAAC G+ +  ++L+  
Sbjct: 84  INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143

Query: 220 GASRMSLNCNGWLPLDVA 237
           GA   + +  G   L + 
Sbjct: 144 GADIRAQDSLGNTVLHIL 161

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (305), Expect = 7e-32
 Identities = 45/200 (22%), Positives = 72/200 (36%), Gaps = 45/200 (22%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH AA   + E   +L+E   ++        +T   Y  G+TALH A +N +V  +R +
Sbjct: 40  ALHIAALYDNLEAAMVLMEAAPELVFEP----MTSELY-EGQTALHIAVINQNVNLVRAL 94

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
           +A                     G+SV ++   S      +     G   L  AA  G  
Sbjct: 95  LAR--------------------GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSE 134

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRGA-- 221
           + V+LL++  A++ A              G+T LH      N     +   +LLS     
Sbjct: 135 EIVRLLIEHGADIRAQDSL----------GNTVLHILILQPNKTFACQMYNLLLSYDGGD 184

Query: 222 ----SRMSLNCNGWLPLDVA 237
                 +  N  G  P  +A
Sbjct: 185 HLKSLELVPNNQGLTPFKLA 204

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  118 bits (298), Expect = 6e-31
 Identities = 36/186 (19%), Positives = 51/186 (27%), Gaps = 50/186 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRN---YCGQVTRADYLSGRTALHFAAVNGHVR 102
            + LH A    +  +V  LL  GA V++R                G   L FAA  G   
Sbjct: 76  QTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEE 135

Query: 103 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 159
            +RL++   AD                                    +      G T LH
Sbjct: 136 IVRLLIEHGAD------------------------------------IRAQDSLGNTVLH 159

Query: 160 MAALNGYFDCV----QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           +  L            LLL         +     +      G TP   A   GN+   Q 
Sbjct: 160 ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ----GLTPFKLAGVEGNIVMFQH 215

Query: 216 LLSRGA 221
           L+ +  
Sbjct: 216 LMQKRK 221

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 45/138 (32%)

Query: 88  GRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
             + L  AA    V+ +  ++     +                                 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCE--------------------------------- 29

Query: 144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
              V++    G TALH+AAL    +   +L++    +                G T LH 
Sbjct: 30  ---VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY-----EGQTALHI 81

Query: 204 AACGGNLKCCQVLLSRGA 221
           A    N+   + LL+RGA
Sbjct: 82  AVINQNVNLVRALLARGA 99

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 16/90 (17%)

Query: 154 GITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
             + L +AA       +  LL      V                G T LH AA   NL+ 
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM----------GETALHIAALYDNLEA 52

Query: 213 CQVLLSRGA--SRMSLNC---NGWLPLDVA 237
             VL+          +      G   L +A
Sbjct: 53  AMVLMEAAPELVFEPMTSELYEGQTALHIA 82

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  124 bits (314), Expect = 3e-33
 Identities = 46/200 (23%), Positives = 66/200 (33%), Gaps = 60/200 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           PLH A +     +  +L+ N A D+++R +           G T L  AA       +  
Sbjct: 61  PLHAAVSADAQGVFQILIRNRATDLDARMH----------DGTTPLILAARLAVEGMLED 110

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++   AD                                    VN   D G +ALH AA 
Sbjct: 111 LINSHAD------------------------------------VNAVDDLGKSALHWAAA 134

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
               D   +LL   AN                   TPL  AA  G+ +  +VLL   A+R
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANR 184

Query: 224 MSLNCNGWLPLDVARMWGRH 243
              +    LP D+A+    H
Sbjct: 185 DITDHMDRLPRDIAQERMHH 204

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  118 bits (299), Expect = 4e-31
 Identities = 45/190 (23%), Positives = 64/190 (33%), Gaps = 52/190 (27%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH AA    ++    LLE  AD N ++            GRT LH A            
Sbjct: 28  ALHLAARYSRSDAAKRLLEASADANIQDN----------MGRTPLHAAVSADAQ------ 71

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                      V    I     D                ++     G T L +AA     
Sbjct: 72  ----------GVFQILIRNRATD----------------LDARMHDGTTPLILAARLAVE 105

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
             ++ L++ HA+V+AV             G + LH+AA   N+    VLL  GA++   N
Sbjct: 106 GMLEDLINSHADVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQN 155

Query: 228 CNGWLPLDVA 237
                PL +A
Sbjct: 156 NREETPLFLA 165

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (290), Expect = 9e-30
 Identities = 31/179 (17%), Positives = 55/179 (30%), Gaps = 59/179 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PL  AA      ++  L+ + ADVN+ +            G++ALH+AA   +V    ++
Sbjct: 95  PLILAARLAVEGMLEDLINSHADVNAVDD----------LGKSALHWAAAVNNVDAAVVL 144

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A+                                     +   +   T L +AA  
Sbjct: 145 LKNGAN------------------------------------KDMQNNREETPLFLAARE 168

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
           G ++  ++LLD  AN                    P   A    +    ++L      R
Sbjct: 169 GSYETAKVLLDHFANRDITDHM----------DRLPRDIAQERMHHDIVRLLDEYNLVR 217

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 92.1 bits (230), Expect = 1e-21
 Identities = 33/187 (17%), Positives = 55/187 (29%), Gaps = 61/187 (32%)

Query: 56  GHNEIVALLLENGADV-NSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADF 111
               +++  +  GA + N  +           +G TALH AA        + ++   AD 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDR----------TGETALHLAARYSRSDAAKRLLEASAD- 50

Query: 112 VPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
                                               N   + G T LH A         Q
Sbjct: 51  -----------------------------------ANIQDNMGRTPLHAAVSADAQGVFQ 75

Query: 172 LLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 230
           +L+   A ++ A              G+TPL  AA        + L++  A   +++  G
Sbjct: 76  ILIRNRATDLDARMHD----------GTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 125

Query: 231 WLPLDVA 237
              L  A
Sbjct: 126 KSALHWA 132

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 88.2 bits (220), Expect = 3e-20
 Identities = 24/140 (17%), Positives = 43/140 (30%), Gaps = 49/140 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            S LH+AAA  + +   +LL+NGA+ + +N              T L  AA  G     +
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNN----------REETPLFLAAREGSYETAK 175

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           +++   A+                                     +           +A 
Sbjct: 176 VLLDHFAN------------------------------------RDITDHMDRLPRDIAQ 199

Query: 163 LNGYFDCVQLLLDLHANVSA 182
              + D V+LL + +   S 
Sbjct: 200 ERMHHDIVRLLDEYNLVRSP 219

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  121 bits (307), Expect = 5e-33
 Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 66/198 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L  AAA+G  E V  LLE GA+ N+ N            GR  +      G  R   L+
Sbjct: 15  WLATAAARGRVEEVRALLEAGANPNAPNS----------YGRRPIQVMM-MGSARVAELL 63

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAAL 163
           +   A+                                     N A    +T  +H AA 
Sbjct: 64  LLHGAE------------------------------------PNCADPATLTRPVHDAAR 87

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
            G+ D + +L    A +                G  P+  A   G+    + L +     
Sbjct: 88  EGFLDTLVVLHRAGARLDVRD----------AWGRLPVDLAEELGHRDVARYLRAAAG-- 135

Query: 224 MSLNCNGWLPLDVARMWG 241
                 G     +    G
Sbjct: 136 ---GTRGSNHARIDAAEG 150

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 94.9 bits (237), Expect = 3e-23
 Identities = 33/180 (18%), Positives = 47/180 (26%), Gaps = 61/180 (33%)

Query: 65  LENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMN 121
           +E  A  +                   L  AA  G V  +R ++   A+           
Sbjct: 1   MEPAAGSSMEP------------SADWLATAAARGRVEEVRALLEAGAN----------- 37

Query: 122 TQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVS 181
                                     N     G   + +    G     +LLL   A  +
Sbjct: 38  -------------------------PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN 71

Query: 182 AVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
                  T          P+H AA  G L    VL   GA     +  G LP+D+A   G
Sbjct: 72  CADPATLT---------RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELG 122

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 93.3 bits (233), Expect = 1e-22
 Identities = 30/200 (15%), Positives = 52/200 (26%), Gaps = 66/200 (33%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L +AA  G   E + LL+        +++G    P+      G   +  LLL +GA+ N 
Sbjct: 16  LATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNC 72

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
            +                +H AA  G +  + ++    A                     
Sbjct: 73  ADPAT---------LTRPVHDAAREGFLDTLVVLHRAGAR-------------------- 103

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
                           ++     G   + +A   G+ D  + L                 
Sbjct: 104 ----------------LDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--------- 138

Query: 191 MDLIGAGSTPLHFAACGGNL 210
                 GS      A  G  
Sbjct: 139 ------GSNHARIDAAEGPS 152

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 21/126 (16%), Positives = 31/126 (24%), Gaps = 50/126 (39%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
            L  P+H AA +G  + + +L   GA ++ R+            GR  +  A   GH   
Sbjct: 77  TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA----------WGRLPVDLAEELGHRDV 126

Query: 104 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAA 162
            R                                            A    G     + A
Sbjct: 127 ARY---------------------------------------LRAAAGGTRGSNHARIDA 147

Query: 163 LNGYFD 168
             G  D
Sbjct: 148 AEGPSD 153

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  120 bits (304), Expect = 6e-33
 Identities = 61/177 (34%), Positives = 83/177 (46%), Gaps = 59/177 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA  GH E+V LLLE GADVN+++           +GRT LH AA NGH+  ++L+
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKLL 54

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                    VN     G T LH+AA N
Sbjct: 55  LEAGAD------------------------------------VNAKDKNGRTPLHLAARN 78

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           G+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  ++LL  GA
Sbjct: 79  GHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 88.6 bits (221), Expect = 2e-21
 Identities = 49/158 (31%), Positives = 70/158 (44%), Gaps = 49/158 (31%)

Query: 87  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
           +GRT LH AA NGH+  ++L++   AD                                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 27

Query: 144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
              VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH 
Sbjct: 28  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHL 74

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
           AA  G+L+  ++LL  GA   + + NG  PL +A   G
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG 112

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  125 bits (316), Expect = 8e-33
 Identities = 37/212 (17%), Positives = 61/212 (28%), Gaps = 61/212 (28%)

Query: 31  DCNPCLAKYSTFGGLNSPLHFAAAK-GHNEIVALLLENGADVNSRNYCGQVTRADYLSGR 89
           D     ++  T    ++P    +     NE      +    + + NY           G 
Sbjct: 110 DTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENY----------DGH 159

Query: 90  TALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
           T LH A ++     +RL+    AD                                    
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGAD------------------------------------ 183

Query: 147 VN-KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
           +N      G T LH+A        ++LLL   A+ +A  +           G TPL  A 
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG----------GRTPLGSAL 233

Query: 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
              N    ++L + GA       +   P   +
Sbjct: 234 LRPNPILARLLRAHGAPEPEDGGDKLSPCSSS 265

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  116 bits (293), Expect = 1e-29
 Identities = 38/195 (19%), Positives = 55/195 (28%), Gaps = 48/195 (24%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH AA  G    V  L   GA V                G TALH A       C  ++
Sbjct: 48  ALHLAAILGEASTVEKLYAAGAGVLVAER----------GGHTALHLACRVRAHTCACVL 97

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA-LNGY 166
           +                        S       + L++  +   D       + +  N  
Sbjct: 98  LQ--------------------PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE 137

Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL 226
            +      D    + A  +           G TPLH A    + +  ++L   GA    L
Sbjct: 138 NEEEPRDEDWRLQLEAENYD----------GHTPLHVAVIHKDAEMVRLLRDAGA---DL 184

Query: 227 NC----NGWLPLDVA 237
           N      G  PL +A
Sbjct: 185 NKPEPTCGRTPLHLA 199

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  114 bits (288), Expect = 5e-29
 Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 52/199 (26%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT----ALHFAAVNGHV 101
           ++ LH A     +    +LL+             +T++   +  T    A   +  N   
Sbjct: 79  HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPEN 138

Query: 102 RCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL 158
                                                           +      G T L
Sbjct: 139 EEEPRDEDWRLQ------------------------------------LEAENYDGHTPL 162

Query: 159 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
           H+A ++   + V+LL D  A+++               G TPLH A         ++LL 
Sbjct: 163 HVAVIHKDAEMVRLLRDAGADLNKPEPTC---------GRTPLHLAVEAQAASVLELLLK 213

Query: 219 RGASRMSLNCNGWLPLDVA 237
            GA   +    G  PL  A
Sbjct: 214 AGADPTARMYGGRTPLGSA 232

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  113 bits (284), Expect = 2e-28
 Identities = 31/166 (18%), Positives = 42/166 (25%), Gaps = 58/166 (34%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH A      E+V LL + GAD+N           +   GRT LH A        + L+
Sbjct: 161 PLHVAVIHKDAEMVRLLRDAGADLNKP---------EPTCGRTPLHLAVEAQAASVLELL 211

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                          GG T L  A L 
Sbjct: 212 LKAGAD------------------------------------PTARMYGGRTPLGSALLR 235

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
                 +LL    A                    +P   +    + 
Sbjct: 236 PNPILARLLRAHGAPEPEDGGD----------KLSPCSSSGSDSDS 271

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  112 bits (282), Expect = 3e-28
 Identities = 36/202 (17%), Positives = 54/202 (26%), Gaps = 56/202 (27%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD---VNSRNYCGQVTRADYLSGRTALHFAAVNGHVR 102
           ++ LH A    H   +  LL   A    ++ +N            G+TALH AA+ G   
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND----------LGQTALHLAAILGEAS 59

Query: 103 CIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 159
            +  +    A                                     V  A  GG TALH
Sbjct: 60  TVEKLYAAGAG------------------------------------VLVAERGGHTALH 83

Query: 160 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP----LHFAACGGNLKCCQV 215
           +A       C  +LL    +          +        T        +      +    
Sbjct: 84  LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPR 143

Query: 216 LLSRGASRMSLNCNGWLPLDVA 237
                    + N +G  PL VA
Sbjct: 144 DEDWRLQLEAENYDGHTPLHVA 165

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 95.7 bits (239), Expect = 2e-22
 Identities = 34/161 (21%), Positives = 48/161 (29%), Gaps = 42/161 (26%)

Query: 87  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
            G TALH A ++ H   +  ++                                SA  ++
Sbjct: 8   DGDTALHLAVIHQHEPFLDFLL------------------------------GFSAGHEY 37

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           ++   D G TALH+AA+ G    V+ L    A V                G T LH A  
Sbjct: 38  LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERG----------GHTALHLACR 87

Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPL--DVARMWGRHWL 245
                C  VLL    S      + +L    D          
Sbjct: 88  VRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.1 bits (222), Expect = 5e-20
 Identities = 28/166 (16%), Positives = 44/166 (26%), Gaps = 58/166 (34%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           A    D    ++L     D N       T G   +PLH A       ++ LLL+ GAD  
Sbjct: 165 AVIHKDAEMVRLLRDAGADLN---KPEPTCG--RTPLHLAVEAQAASVLELLLKAGADPT 219

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRG 129
           +R Y           GRT L  A +  +    RL+    A                    
Sbjct: 220 ARMY----------GGRTPLGSALLRPNPILARLLRAHGAP------------------- 250

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
                              +     ++    +  +   D      +
Sbjct: 251 -----------------EPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  123 bits (311), Expect = 1e-32
 Identities = 34/193 (17%), Positives = 54/193 (27%), Gaps = 56/193 (29%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L  ++ +G  ++V  ++    D +  N            G TALH A   GH   ++ +
Sbjct: 40  LLLDSSLEGEFDLVQRIIYEVDDPSLPND----------EGITALHNAVCAGHTEIVKFL 89

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           V    +                                    VN A   G T LH AA  
Sbjct: 90  VQFGVN------------------------------------VNAADSDGWTPLHCAASC 113

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
                 + L++  A V A+T+            +         G  +C Q L        
Sbjct: 114 NNVQVCKFLVESGAAVFAMTYSDMQ-------TAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 225 SLNCNGWLPLDVA 237
            +N      L   
Sbjct: 167 IMNKGVIYALWDY 179

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  120 bits (303), Expect = 1e-31
 Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 63/196 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L         +  +  + +G  V                    L  +++ G    ++ +
Sbjct: 8   SLPPGKRTNLRKTGSERIAHGMRVKFNPL-----------PLALLLDSSLEGEFDLVQRI 56

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +    D                                     +   D GITALH A   
Sbjct: 57  IYEVDD------------------------------------PSLPNDEGITALHNAVCA 80

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G+ + V+ L+    NV+A              G TPLH AA   N++ C+ L+  GA+  
Sbjct: 81  GHTEIVKFLVQFGVNVNAADSD----------GWTPLHCAASCNNVQVCKFLVESGAAVF 130

Query: 225 SLNCNG---WLPLDVA 237
           ++  +           
Sbjct: 131 AMTYSDMQTAADKCEE 146

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 33/211 (15%), Positives = 60/211 (28%), Gaps = 69/211 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH A   GH EIV  L++ G +VN+ +            G T LH AA   +V      
Sbjct: 73  ALHNAVCAGHTEIVKFLVQFGVNVNAADS----------DGWTPLHCAASCNNV------ 116

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                     +V    +E     G++V +             +              GY 
Sbjct: 117 ----------QVCKFLVES----GAAVFAM----------TYSDMQTAADKCEEMEEGYT 152

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL- 226
            C Q L  +   +  +                 L       +    ++ +  G     + 
Sbjct: 153 QCSQFLYGVQEKMGIMN----------KGVIYALWDYEPQNDD---ELPMKEGDCMTIIH 199

Query: 227 ---------------NCNGWLPLDVARMWGR 242
                          +  G++P ++  ++ R
Sbjct: 200 REDEDEIEWWWARLNDKEGYVPRNLLGLYPR 230

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 85.0 bits (211), Expect = 7e-19
 Identities = 28/151 (18%), Positives = 48/151 (31%), Gaps = 44/151 (29%)

Query: 87  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
           +G+ +L                         +  + +I      G  VK           
Sbjct: 4   TGQVSLPPGKRTNLR----------------KTGSERIAH----GMRVKFN--------- 34

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
                   +  L  ++L G FD VQ ++    + S               G T LH A C
Sbjct: 35  -----PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE----------GITALHNAVC 79

Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
            G+ +  + L+  G +  + + +GW PL  A
Sbjct: 80  AGHTEIVKFLVQFGVNVNAADSDGWTPLHCA 110

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 11/90 (12%), Positives = 17/90 (18%), Gaps = 11/90 (12%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G  +L               +     V                    L  ++  G     
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL-----------PLALLLDSSLEGEFDLV 53

Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
           Q ++         N  G   L  A   G  
Sbjct: 54  QRIIYEVDDPSLPNDEGITALHNAVCAGHT 83

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.0 bits (141), Expect = 8e-10
 Identities = 11/88 (12%), Positives = 21/88 (23%), Gaps = 11/88 (12%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCL-AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L  AA   +    K L++    + A   +     +       +G+ +    L      + 
Sbjct: 107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 166

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGH 100
             N               AL        
Sbjct: 167 IMNK----------GVIYALWDYEPQND 184

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  120 bits (305), Expect = 3e-32
 Identities = 40/201 (19%), Positives = 64/201 (31%), Gaps = 59/201 (29%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +PL  A   G    +  L+EN   +  ++            G TAL +A  N  +    
Sbjct: 36  RTPLMVACMLGMENAIDKLVENFDKLEDKDI----------EGSTALIWAVKNNRLGIAE 85

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   ++                                    VN     G T L  + 
Sbjct: 86  KLLSKGSN------------------------------------VNTKDFSGKTPLMWSI 109

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
           + GY +    LL+  ANV+               G TPL  A+  G  +  + LL  GA 
Sbjct: 110 IFGYSEMSYFLLEHGANVNDRNLE----------GETPLIVASKYGRSEIVKKLLELGAD 159

Query: 223 RMSLNCNGWLPLDVARMWGRH 243
             + +  G      AR++GR 
Sbjct: 160 ISARDLTGLTAEASARIFGRQ 180

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  107 bits (270), Expect = 3e-27
 Identities = 39/223 (17%), Positives = 71/223 (31%), Gaps = 73/223 (32%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
           +S+  +     L+ A   G       L+           K    G  ++ L +A      
Sbjct: 32  DSYNRTP----LMVACMLGMENAIDKLVENFDKLE---DK-DIEG--STALIWAVKNNRL 81

Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 115
            I   LL  G++VN++++          SG+T L ++ + G+      ++   A+     
Sbjct: 82  GIAEKLLSKGSNVNTKDF----------SGKTPLMWSIIFGYSEMSYFLLEHGAN----- 126

Query: 116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
                                          VN     G T L +A+  G  + V+ LL+
Sbjct: 127 -------------------------------VNDRNLEGETPLIVASKYGRSEIVKKLLE 155

Query: 176 LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
           L A++SA              G T    A   G  +  ++   
Sbjct: 156 LGADISARDLT----------GLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 87.8 bits (219), Expect = 2e-20
 Identities = 40/199 (20%), Positives = 54/199 (27%), Gaps = 65/199 (32%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
                  K  N+ +  L       N R+             RT L  A + G    I  +
Sbjct: 11  VEKIKDEKSINQNLDFL------RNYRDSYN----------RTPLMVACMLGMENAIDKL 54

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           V                                         +      G TAL  A  N
Sbjct: 55  VENFDK------------------------------------LEDKDIEGSTALIWAVKN 78

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
                 + LL   +NV+   F           G TPL ++   G  +    LL  GA+  
Sbjct: 79  NRLGIAEKLLSKGSNVNTKDFS----------GKTPLMWSIIFGYSEMSYFLLEHGANVN 128

Query: 225 SLNCNGWLPLDVARMWGRH 243
             N  G  PL VA  +GR 
Sbjct: 129 DRNLEGETPLIVASKYGRS 147

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 69.7 bits (172), Expect = 5e-14
 Identities = 23/155 (14%), Positives = 42/155 (27%), Gaps = 49/155 (31%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           G                     DF+                                   
Sbjct: 8   GEIVEKIKDEKSI-----NQNLDFL----------------------------------R 28

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           N       T L +A + G  + +  L++    +                GST L +A   
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIE----------GSTALIWAVKN 78

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
             L   + LLS+G++  + + +G  PL  + ++G 
Sbjct: 79  NRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGY 113

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  117 bits (297), Expect = 7e-32
 Identities = 35/178 (19%), Positives = 52/178 (29%), Gaps = 61/178 (34%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L  AAA+G  E V  LLE GAD N+ N            GR  +      G  +   L+
Sbjct: 15  GLATAAARGQVETVRQLLEAGADPNALNR----------FGRRPIQVMM-MGSAQVAELL 63

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAAL 163
           +   A+                                     N A    +T  +H AA 
Sbjct: 64  LLHGAE------------------------------------PNCADPATLTRPVHDAAR 87

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
            G+ D + +L    A +                G  P+  A   G+    + L +   
Sbjct: 88  EGFLDTLVVLHRAGARLDVCD----------AWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 98.7 bits (247), Expect = 8e-25
 Identities = 33/177 (18%), Positives = 46/177 (25%), Gaps = 59/177 (33%)

Query: 68  GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 124
              ++              S    L  AA  G V  +R ++   AD              
Sbjct: 2   SPGIHMLGG----------SSDAGLATAAARGQVETVRQLLEAGAD-------------- 37

Query: 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 184
                                  N     G   + +    G     +LLL   A  +   
Sbjct: 38  ----------------------PNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCAD 74

Query: 185 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
               T          P+H AA  G L    VL   GA     +  G LP+D+A   G
Sbjct: 75  PATLT---------RPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG 122

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.1 bits (217), Expect = 1e-20
 Identities = 26/169 (15%), Positives = 48/169 (28%), Gaps = 51/169 (30%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L +AA  G     + LL+        + FG    P+      G  ++  LLL +GA+ N 
Sbjct: 16  LATAAARGQVETVRQLLEAGADPNALNRFG--RRPIQVMM-MGSAQVAELLLLHGAEPNC 72

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGD 130
            +                +H AA  G +  + ++    A                     
Sbjct: 73  ADPAT---------LTRPVHDAAREGFLDTLVVLHRAGAR-------------------- 103

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 179
                           ++     G   + +A   G+ D  + L     +
Sbjct: 104 ----------------LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  121 bits (305), Expect = 9e-32
 Identities = 41/226 (18%), Positives = 68/226 (30%), Gaps = 35/226 (15%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +    G +A    L+   +D    +  +   C     ++  + G +  LH A  K   + 
Sbjct: 52  LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT---DEF--YQGHS-ALHIAIEKRSLQC 105

Query: 61  VALLLENGADVNSRNYCGQVTRADYLS---GRTALHFAAVNGHVRCIRLVVADFVPSVPF 117
           V LL+ENGADV+ R       +        G   L  AA       +  ++         
Sbjct: 106 VKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE-------- 157

Query: 118 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDL 176
                     +            + L   V  A +    +AL +   +G       L   
Sbjct: 158 -------NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPT 210

Query: 177 HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
                               G TPL  AA  G ++  + +L R  S
Sbjct: 211 VQLEEISN----------HQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  117 bits (294), Expect = 4e-30
 Identities = 51/252 (20%), Positives = 80/252 (31%), Gaps = 43/252 (17%)

Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAKYST--------FGGLNSPLHFAAA---KGHNEI 60
           +RL S    G   E   LL+     +KY T         G   + L  A      G N  
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTG--KTCLMKAVLNLQDGVNAC 61

Query: 61  VALLLENGADV-NSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV 119
           +  LL+   D  N +         ++  G +ALH A     ++C++L+V +         
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--------- 112

Query: 120 MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD---L 176
                      G+ V  +       K        G   L +AA    +D V  LL+    
Sbjct: 113 -----------GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161

Query: 177 HANVSAVT------FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG 230
            A++ A         H    +      ++ L      G L+    L          N  G
Sbjct: 162 PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQG 221

Query: 231 WLPLDVARMWGR 242
             PL +A   G+
Sbjct: 222 LTPLKLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 88.7 bits (220), Expect = 4e-20
 Identities = 32/187 (17%), Positives = 55/187 (29%), Gaps = 53/187 (28%)

Query: 17  AARDGDFVEAKMLLDC-----------NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL 65
           A         K+L++                 + + F     PL  AA     ++V  LL
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 66  ENG---ADVNSRNYCGQ------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP 116
           EN    A + + +  G       V  AD     +AL     +G +               
Sbjct: 157 ENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLL--------------- 201

Query: 117 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL 176
            ++                  C    L +  N     G+T L +AA  G  +  + +L  
Sbjct: 202 -QM--------------GARLCPTVQLEEISNHQ---GLTPLKLAAKEGKIEIFRHILQR 243

Query: 177 HANVSAV 183
             + +A 
Sbjct: 244 EFSGAAA 250

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.1 bits (164), Expect = 1e-12
 Identities = 27/165 (16%), Positives = 44/165 (26%), Gaps = 30/165 (18%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
            R  L      G    +  ++     +  +   +                          
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS-------------------------A 36

Query: 148 NKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSM-DLIGAGSTPLHF 203
                 G T L  A LN   G   C+  LL +  +             D    G + LH 
Sbjct: 37  YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHI 96

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 248
           A    +L+C ++L+  GA      C  +        +    L PL
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL-PL 140

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.0 bits (117), Expect = 1e-06
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           LV    DG       L          +  G   +PL  AA +G  EI   +L+      +
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQG--LTPLKLAAKEGKIEIFRHILQREFSGAA 249

Query: 74  RN 75
            +
Sbjct: 250 AH 251

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  117 bits (297), Expect = 1e-31
 Identities = 37/200 (18%), Positives = 62/200 (31%), Gaps = 62/200 (31%)

Query: 48  PLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
            L  AAA+G  + V  LL       ++ N            G+TAL      G       
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNR----------FGKTALQVMM-FGSTAIALE 53

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++   A                                      N     G + +H AA 
Sbjct: 54  LLKQGAS------------------------------------PNVQDTSGTSPVHDAAR 77

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
            G+ D +++L++  A+V+             G G+ P+H A   G+      L +  +  
Sbjct: 78  TGFLDTLKVLVEHGADVNVPD----------GTGALPIHLAVQEGHTAVVSFLAA-ESDL 126

Query: 224 MSLNCNGWLPLDVARMWGRH 243
              +  G  PL++A   G  
Sbjct: 127 HRRDARGLTPLELALQRGAQ 146

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  113 bits (285), Expect = 6e-30
 Identities = 45/216 (20%), Positives = 67/216 (31%), Gaps = 72/216 (33%)

Query: 11  GERLVSAARDGDFVEAKMLL-----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL 65
           G+RL  AA  GD  E + LL       +   A  + FG   + L      G   I   LL
Sbjct: 3   GDRLSGAAARGDVQEVRRLLHRELVHPD---AL-NRFG--KTALQ-VMMFGSTAIALELL 55

Query: 66  ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNT 122
           + GA  N ++           SG + +H AA  G +  ++++V   AD            
Sbjct: 56  KQGASPNVQDT----------SGTSPVHDAARTGFLDTLKVLVEHGAD------------ 93

Query: 123 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 182
                                   VN     G   +H+A   G+   V  L    +++  
Sbjct: 94  ------------------------VNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128

Query: 183 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
                         G TPL  A   G      +L  
Sbjct: 129 RDAR----------GLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 77.8 bits (193), Expect = 3e-17
 Identities = 29/154 (18%), Positives = 45/154 (29%), Gaps = 51/154 (33%)

Query: 88  GRTALHFAAVNGHVRCIRLVV----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
               L  AA  G V+ +R ++                                       
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVH--------------------------------- 28

Query: 144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
               +     G TAL +    G       LL   A+ +               G++P+H 
Sbjct: 29  ---PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTS----------GTSPVHD 74

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           AA  G L   +VL+  GA     +  G LP+ +A
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLA 108

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  116 bits (294), Expect = 4e-31
 Identities = 44/197 (22%), Positives = 63/197 (31%), Gaps = 60/197 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           +  L  AA  G  E V  L      +                   T LHFAA    V  +
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG----------RQSTPLHFAAGYNRVSVV 58

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
             ++   AD                                    V+    GG+  LH A
Sbjct: 59  EYLLQHGAD------------------------------------VHAKDKGGLVPLHNA 82

Query: 162 ALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
              G+++  +LL+   A V+                 TPLH AA  G  + C++LL  GA
Sbjct: 83  CSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHEAAAKGKYEICKLLLQHGA 132

Query: 222 SRMSLNCNGWLPLDVAR 238
                N +G  PLD+ +
Sbjct: 133 DPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  112 bits (283), Expect = 1e-29
 Identities = 52/231 (22%), Positives = 72/231 (31%), Gaps = 83/231 (35%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLN---------SPLHFAA 53
           NS         L+ AA+ GD    K L               +N         +PLHFAA
Sbjct: 5   NSEADRQ----LLEAAKAGDVETVKKLCTV----------QSVNCRDIEGRQSTPLHFAA 50

Query: 54  AKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---AD 110
                 +V  LL++GADV++++            G   LH A   GH     L+V   A 
Sbjct: 51  GYNRVSVVEYLLQHGADVHAKDK----------GGLVPLHNACSYGHYEVAELLVKHGAV 100

Query: 111 FVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 170
                                               VN A     T LH AA  G ++  
Sbjct: 101 ------------------------------------VNVADLWKFTPLHEAAAKGKYEIC 124

Query: 171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           +LLL   A+ +               G+TPL      G+     +L    A
Sbjct: 125 KLLLQHGADPTKKNRD----------GNTPLDLVKD-GDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 34/175 (19%), Positives = 46/175 (26%), Gaps = 55/175 (31%)

Query: 68  GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 127
           GA  NS                  L  AA  G V                E +       
Sbjct: 1   GAMGNSE-------------ADRQLLEAAKAGDV----------------ETVKKLCTVQ 31

Query: 128 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHY 187
             +                         T LH AA       V+ LL   A+V A     
Sbjct: 32  SVN----------------CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKG- 74

Query: 188 GTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
                    G  PLH A   G+ +  ++L+  GA     +   + PL  A   G+
Sbjct: 75  ---------GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  115 bits (291), Expect = 5e-31
 Identities = 40/178 (22%), Positives = 61/178 (34%), Gaps = 59/178 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH A+ KG    V  LL+NG+D N +++           G T LH A  +GH++ + L+
Sbjct: 13  LLHIASIKGDIPSVEYLLQNGSDPNVKDHA----------GWTPLHEACNHGHLKVVELL 62

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A                                     VN       + LH AA N
Sbjct: 63  LQHKAL------------------------------------VNTTGYQNDSPLHDAAKN 86

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
           G+ D V+LLL   A+ +AV             G  P+ +           +     +S
Sbjct: 87  GHVDIVKLLLSYGASRNAVNIF----------GLRPVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  102 bits (256), Expect = 5e-26
 Identities = 39/173 (22%), Positives = 61/173 (35%), Gaps = 60/173 (34%)

Query: 68  GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 124
           G D  + +            G T LH A++ G +  +  ++   +D              
Sbjct: 1   GIDPFTNHR-----------GETLLHIASIKGDIPSVEYLLQNGSD-------------- 35

Query: 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 184
                                  N     G T LH A  +G+   V+LLL   A V+   
Sbjct: 36  ----------------------PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73

Query: 185 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           +             +PLH AA  G++   ++LLS GASR ++N  G  P+D  
Sbjct: 74  YQ----------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYT 116

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 89.4 bits (223), Expect = 1e-21
 Identities = 38/173 (21%), Positives = 56/173 (32%), Gaps = 60/173 (34%)

Query: 17  AARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           A+  GD    + LL    D N    K     G  +PLH A   GH ++V LLL++ A VN
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPN---VK--DHAG-WTPLHEACNHGHLKVVELLLQHKALVN 70

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRG 129
           +  Y             + LH AA NGHV  ++L++   A                    
Sbjct: 71  TTGYQ----------NDSPLHDAAKNGHVDIVKLLLSYGAS------------------- 101

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 182
                             N     G+  +           + L    + + SA
Sbjct: 102 -----------------RNAVNIFGLRPVDYTDDESMKSLLLLPEK-NESSSA 136

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.2 bits (186), Expect = 1e-16
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 11/97 (11%)

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
                 G  T LH+A++ G    V+ LL   ++ +              AG TPLH A  
Sbjct: 4   PFTNHRG-ETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------AGWTPLHEACN 52

Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
            G+LK  ++LL   A   +       PL  A   G  
Sbjct: 53  HGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHV 89

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.3 bits (98), Expect = 1e-04
 Identities = 4/26 (15%), Positives = 11/26 (42%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNS 73
           P+ +   +    ++ L  +N +   S
Sbjct: 112 PVDYTDDESMKSLLLLPEKNESSSAS 137

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  117 bits (294), Expect = 4e-30
 Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 42/204 (20%)

Query: 48  PLHFAAAKG----HNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---GH 100
            L    ++G       +++ LL +   +    +       +  +G+T L  A +N   G 
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEF------REPSTGKTCLPKALLNLSAGR 61

Query: 101 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHM 160
              I +++         ++            S  +    +             G TALH+
Sbjct: 62  NDTIPILL---------DIAEKTGNMREFINSPFRDVYYR-------------GQTALHI 99

Query: 161 AALNGYFDCVQLLLDLHANVSA----VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
           A        V+LL++  A+V A      F           G  PL  AAC         L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 217 LSRGASRMSLN---CNGWLPLDVA 237
              G  +  L      G   L   
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHAL 183

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  109 bits (273), Expect = 3e-27
 Identities = 38/233 (16%), Positives = 67/233 (28%), Gaps = 52/233 (22%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
            S G + +   L+  A     +   +         +  T       LH A  +     V 
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQT------ALHIAIERRCKHYVE 110

Query: 63  LLLENGADVNSRN----YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFE 118
           LL+E GADV+++     +  +     +  G   L  AA       +  +           
Sbjct: 111 LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT---------- 160

Query: 119 VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG---------YFDC 169
                   + G       + D       + +    G T LH                   
Sbjct: 161 --------ENG-----HKQAD-------LRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
             LLL   A +     +    ++    G +PL  AA  G +   Q ++ R  +
Sbjct: 201 YDLLLIKCAKLFP-DTNLEALLNN--DGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 82.1 bits (203), Expect = 9e-18
 Identities = 30/143 (20%), Positives = 49/143 (34%), Gaps = 30/143 (20%)

Query: 48  PLHFAAAKGHNEIVALLLENG---ADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           PL  AA      IV  L ENG   AD+  ++            G T LH           
Sbjct: 143 PLSLAACTNQPHIVHYLTENGHKQADLRRQDS----------RGNTVLHALVAIADNTR- 191

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
                 FV  + ++++  +        + +    +  AL   +N     G++ L MAA  
Sbjct: 192 --ENTKFVTKM-YDLLLIK-------CAKLFPDTNLEAL---LNND---GLSPLMMAAKT 235

Query: 165 GYFDCVQLLLDLHANVSAVTFHY 187
           G     Q ++      +A   H+
Sbjct: 236 GKIGIFQHIIRREIADAAAHHHH 258

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (297), Expect = 1e-29
 Identities = 48/196 (24%), Positives = 76/196 (38%), Gaps = 46/196 (23%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N+PL  A       +VA L++ GAD    N           S R+ALH AA N     + 
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNK----------SERSALHQAAANRDFGMMV 216

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
            ++                       +S K K D       + +    G+TAL + A N 
Sbjct: 217 YML-----------------------NSTKLKGD-------IEELDRNGMTALMIVAHNE 246

Query: 166 YFDCV---QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGA 221
             D V   +LL++  A V         S      G T LH+AA   N+   + L+  +G+
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYK--GRTALHYAAQVSNMPIVKYLVGEKGS 304

Query: 222 SRMSLNCNGWLPLDVA 237
           ++   + +G  P+ +A
Sbjct: 305 NKDKQDEDGKTPIMLA 320

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  118 bits (297), Expect = 2e-29
 Identities = 41/208 (19%), Positives = 66/208 (31%), Gaps = 58/208 (27%)

Query: 46  NSPLHFAAAKGHNEIVALLLEN---GADVNSRNYCGQVTRADYLSGRTALHFAAVNGH-- 100
            S LH AAA     ++  +L +     D+   +           +G TAL   A N    
Sbjct: 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR----------NGMTALMIVAHNEGRD 249

Query: 101 -VRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
            V   +L+V   A              ++ D       +                  G T
Sbjct: 250 QVASAKLLVEKGAK-------------VDYDGAARKDSEKY---------------KGRT 281

Query: 157 ALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           ALH AA       V+ L+    +N                 G TP+  AA  G ++    
Sbjct: 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGRIEVVMY 331

Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRH 243
           L+ +GAS  +++        +A+    H
Sbjct: 332 LIQQGASVEAVDATDHTARQLAQANNHH 359

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  113 bits (286), Expect = 5e-28
 Identities = 31/193 (16%), Positives = 49/193 (25%), Gaps = 50/193 (25%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH  A  G   I   +     ++    +            RT LH+ A N        +
Sbjct: 97  KLHTEA-AGSYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSEDL 144

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
           +              +     G         D       VN       T L +A L    
Sbjct: 145 IVHEA----------KECIAAG--------AD-------VNAMDCDENTPLMLAVLARRR 179

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS---RGASRM 224
             V  L+   A+ +                 + LH AA   +      +L+         
Sbjct: 180 RLVAYLMKAGADPTIYNKS----------ERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229

Query: 225 SLNCNGWLPLDVA 237
            L+ NG   L + 
Sbjct: 230 ELDRNGMTALMIV 242

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  109 bits (274), Expect = 2e-26
 Identities = 33/183 (18%), Positives = 56/183 (30%), Gaps = 55/183 (30%)

Query: 46  NSPLHFAAAKGHNEIVA---LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVR 102
            + L   A     + VA   LL+E GA V+      + +      GRTALH+AA   ++ 
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYK--GRTALHYAAQVSNMP 293

Query: 103 CIRLVV----ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL 158
            ++ +V    ++                                     +K  + G T +
Sbjct: 294 IVKYLVGEKGSN------------------------------------KDKQDEDGKTPI 317

Query: 159 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
            +AA  G  + V  L+   A+V AV               T    A    +     +   
Sbjct: 318 MLAAQEGRIEVVMYLIQQGASVEAVDAT----------DHTARQLAQANNHHNIVDIFDR 367

Query: 219 RGA 221
              
Sbjct: 368 CRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  100 bits (251), Expect = 2e-23
 Identities = 35/215 (16%), Positives = 58/215 (26%), Gaps = 81/215 (37%)

Query: 48  PLHFAAAKGHNEIVALLL--------ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNG 99
            LH+ A+    E    L+          GADVN+ +              T L  A +  
Sbjct: 128 VLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC----------DENTPLMLAVLAR 177

Query: 100 HVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT 156
             R +  ++   AD                                             +
Sbjct: 178 RRRLVAYLMKAGAD------------------------------------PTIYNKSERS 201

Query: 157 ALHMAALNGYFDCVQLLLDLH---ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---L 210
           ALH AA N  F  +  +L+      ++  +  +          G T L   A       +
Sbjct: 202 ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN----------GMTALMIVAHNEGRDQV 251

Query: 211 KCCQVLLSRGA--------SRMSLNCNGWLPLDVA 237
              ++L+ +GA         + S    G   L  A
Sbjct: 252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYA 286

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 99.6 bits (249), Expect = 5e-23
 Identities = 26/198 (13%), Positives = 39/198 (19%), Gaps = 63/198 (31%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           P       G++ +      N                        LH  A  G        
Sbjct: 64  PNPQGYGNGNDFLGDFNHTNLQIPTEPEP----------ESPIKLHTEA-AGSY------ 106

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                      +                   +       +        T LH  A N   
Sbjct: 107 ----------AITEPITR--ES--------VN-------IIDP-RHNRTVLHWIASNSSA 138

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMDLIGA--------GSTPLHFAACGGNLKCCQVLLSR 219
           +  + L+           H        GA         +TPL  A      +    L+  
Sbjct: 139 EKSEDLIV----------HEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA 188

Query: 220 GASRMSLNCNGWLPLDVA 237
           GA     N +    L  A
Sbjct: 189 GADPTIYNKSERSALHQA 206

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 21/137 (15%), Positives = 39/137 (28%), Gaps = 50/137 (36%)

Query: 48  PLHFAAAKGHNEIVALLL-ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
            LH+AA   +  IV  L+ E G++ + ++            G+T +  AA  G +  +  
Sbjct: 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDE----------DGKTPIMLAAQEGRIEVVMY 331

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++   A                                     V        TA  +A  
Sbjct: 332 LIQQGAS------------------------------------VEAVDATDHTARQLAQA 355

Query: 164 NGYFDCVQLLLDLHANV 180
           N + + V +        
Sbjct: 356 NNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 24/200 (12%), Positives = 49/200 (24%), Gaps = 72/200 (36%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
              L  A+  G+ +     L++                              NG+     
Sbjct: 38  QHSLLEASYDGYIKRQRNELQHY-------------------SLYPNPQGYGNGN----- 73

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
             + DF  +                            +     +        LH  A  G
Sbjct: 74  DFLGDFNHT-------------------------NLQI---PTEPEPESPIKLHTEA-AG 104

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-------- 217
            +   + +     N+                  T LH+ A   + +  + L+        
Sbjct: 105 SYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSEDLIVHEAKECI 153

Query: 218 SRGASRMSLNCNGWLPLDVA 237
           + GA   +++C+   PL +A
Sbjct: 154 AAGADVNAMDCDENTPLMLA 173

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.3 bits (126), Expect = 2e-07
 Identities = 9/90 (10%), Positives = 19/90 (21%), Gaps = 19/90 (21%)

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           +++      +L  A+ +GY    +  L  +                      P       
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQRNELQHY-------------------SLYPNPQGYGN 71

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           GN        +             + L   
Sbjct: 72  GNDFLGDFNHTNLQIPTEPEPESPIKLHTE 101

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 5/26 (19%), Positives = 10/26 (38%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADV 71
           ++    A A  H+ IV +      + 
Sbjct: 347 HTARQLAQANNHHNIVDIFDRCRPER 372

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  115 bits (290), Expect = 2e-29
 Identities = 38/240 (15%), Positives = 62/240 (25%), Gaps = 53/240 (22%)

Query: 12  ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
             L+  AR  D ++  +         K  T       LH A  + +  +V LL+ENGADV
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQT------ALHIAIERRNMTLVTLLVENGADV 127

Query: 72  NSRNYCGQVTRADYLS----GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGD 127
            +        +         G   L  AA    +  ++ ++                   
Sbjct: 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL------------------Q 169

Query: 128 RGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL-----DLHANVSA 182
                      D       ++     G T LH                    +    + A
Sbjct: 170 NSW-----QPAD-------ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 183 VTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
                    ++    G TPL  AA  G +     +L R         +       A    
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  114 bits (287), Expect = 4e-29
 Identities = 39/211 (18%), Positives = 62/211 (29%), Gaps = 48/211 (22%)

Query: 48  PLHFAAAKGHNEIVALLLE-------NGADVNSRNYCGQVTRADYLSGRTALHFAAVN-- 98
            +  A A+ + + +  LL           D   +         D  +G+T L  A +N  
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFK---------DPETGKTCLLKAMLNLH 66

Query: 99  -GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA 157
            G    I L++                  D    +    +     ++     +   G TA
Sbjct: 67  NGQNDTIALLL------------------DVARKTDSLKQF----VNASYTDSYYKGQTA 104

Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVT----FHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           LH+A        V LL++  A+V A      F           G  PL  AAC   L   
Sbjct: 105 LHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIV 164

Query: 214 QVLLSRGASRMSLNC---NGWLPLDVARMWG 241
           + LL        ++     G   L       
Sbjct: 165 KFLLQNSWQPADISARDSVGNTVLHALVEVA 195

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 97.9 bits (244), Expect = 4e-23
 Identities = 31/167 (18%), Positives = 47/167 (28%), Gaps = 51/167 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENG---ADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           PL  AA      IV  LL+N    AD+++R+            G T LH           
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDS----------VGNTVLHALVEVADN--- 197

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDG--SSVKSKCDQSALSKFVNKAADGGITALHMAA 162
                         V NT+      +              L +  N+    G+T L +AA
Sbjct: 198 -------------TVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK---GLTPLALAA 241

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
            +G    +  +L    +                      H AA   +
Sbjct: 242 SSGKIGVLAYILQREIH-----------------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.4 bits (183), Expect = 5e-15
 Identities = 32/165 (19%), Positives = 49/165 (29%), Gaps = 29/165 (17%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
            R ++  A    + + +  ++                        S K   D        
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQ-------------------RSKKRLTDSEF----- 48

Query: 148 NKAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSM-DLIGAGSTPLHF 203
            K  + G T L  A LN   G  D + LLLD+     ++      S  D    G T LH 
Sbjct: 49  -KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL 248
           A    N+    +L+  GA   +     +      R        PL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  113 bits (286), Expect = 3e-29
 Identities = 35/192 (18%), Positives = 48/192 (25%), Gaps = 60/192 (31%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L  AA  G  E+V   ++   D +  N            G TALH A    +   +  +
Sbjct: 24  LLLDAALTGELEVVQQAVKEMNDPSQPNE----------EGITALHNAICGANYSIVDFL 73

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A+                                    VN     G T LH AA  
Sbjct: 74  ITAGAN------------------------------------VNSPDSHGWTPLHCAASC 97

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG--GNLKCCQVLLSRGAS 222
                   L+   A + A T            G+T          G   C   L     S
Sbjct: 98  NDTVICMALVQHGAAIFATTLSD---------GATAFEKCDPYREGYADCATYLADVEQS 148

Query: 223 RMSLNCNGWLPL 234
              +N      L
Sbjct: 149 MGLMNSGAVYAL 160

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (259), Expect = 2e-25
 Identities = 36/231 (15%), Positives = 64/231 (27%), Gaps = 57/231 (24%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ AA  G+    +  +      ++ +  G   + LH A    +  IV  L+  GA+VNS
Sbjct: 25  LLDAALTGELEVVQQAVKEMNDPSQPNEEG--ITALHNAICGANYSIVDFLITAGANVNS 82

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
            +            G T LH AA          +V                      G++
Sbjct: 83  PDS----------HGWTPLHCAASCNDTVICMALV--------------------QHGAA 112

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAAL--NGYFDCVQLLLDLHANVSAVTFHYGTSM 191
           + +                 G TA         GY DC   L D+  ++  +        
Sbjct: 113 IFATTLSD------------GATAFEKCDPYREGYADCATYLADVEQSMGLMN------- 153

Query: 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
                    L   +     +          + +  +         A + G+
Sbjct: 154 ---SGAVYALWDYSAEFGDE-LSFREGESVTVLRRDGPEETDWWWAALHGQ 200

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 98.9 bits (247), Expect = 8e-24
 Identities = 33/181 (18%), Positives = 53/181 (29%), Gaps = 57/181 (31%)

Query: 61  VALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPF 117
           +  +L                    L+    L  AA+ G +  ++  V    D       
Sbjct: 1   MRSVLRKAGSPRKARRAR-------LNPLVLLLDAALTGELEVVQQAVKEMND------- 46

Query: 118 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 177
                                         ++  + GITALH A     +  V  L+   
Sbjct: 47  -----------------------------PSQPNEEGITALHNAICGANYSIVDFLITAG 77

Query: 178 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN-GWLPLDV 236
           ANV++   H          G TPLH AA   +   C  L+  GA+  +   + G    + 
Sbjct: 78  ANVNSPDSH----------GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127

Query: 237 A 237
            
Sbjct: 128 C 128

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 81.5 bits (202), Expect = 8e-18
 Identities = 26/165 (15%), Positives = 41/165 (24%), Gaps = 55/165 (33%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAV--NGHVRCIR 105
           PLH AA+     I   L+++GA + +              G TA         G+  C  
Sbjct: 90  PLHCAASCNDTVICMALVQHGAAIFATTLS---------DGATAFEKCDPYREGYADCAT 140

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
                                     + V+           +     G + AL   +   
Sbjct: 141 Y------------------------LADVEQS---------MGLMNSGAVYALWDYS-AE 166

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
           + D +         V           D  G   T   +AA  G  
Sbjct: 167 FGDELSFREGESVTVLR--------RD--GPEETDWWWAALHGQE 201

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.4 bits (181), Expect = 4e-15
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
             +A    +  L  AAL G  + VQ  +    + S               G T LH A C
Sbjct: 14  ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEE----------GITALHNAIC 63

Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
           G N      L++ GA+  S + +GW PL  A    
Sbjct: 64  GANYSIVDFLITAGANVNSPDSHGWTPLHCAASCN 98

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 15/138 (10%), Positives = 26/138 (18%), Gaps = 47/138 (34%)

Query: 48  PLHFAAA--KGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
                    +G+ +    L +    +   N               AL   +         
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNS----------GAVYALWDYSAEFGDELSF 173

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
                                  G+  +V  +                  T    AAL+G
Sbjct: 174 RE---------------------GESVTVLRRDGP-------------EETDWWWAALHG 199

Query: 166 YFDCV-QLLLDLHANVSA 182
               V +    L   V  
Sbjct: 200 QEGYVPRNYFGLFPRVKP 217

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  111 bits (281), Expect = 9e-29
 Identities = 40/204 (19%), Positives = 65/204 (31%), Gaps = 58/204 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N+PL+ A      EI   L++ GAD+N +N              +   +A   G      
Sbjct: 40  NTPLNIAVHNNDIEIAKALIDRGADINLQNS----------ISDSPYLYAGAQGRT---- 85

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
                       E++   ++    D                +NK    G  AL  AA  G
Sbjct: 86  ------------EILAYMLKHATPD----------------LNKHNRYGGNALIPAAEKG 117

Query: 166 YFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACG-----GNLKCCQVLLSR 219
           + D V+LLL+    ++                G T L  A              ++L+  
Sbjct: 118 HIDNVKLLLEDGREDIDFQNDF----------GYTALIEAVGLREGNQLYQDIVKLLMEN 167

Query: 220 GASRMSLNCNGWLPLDVARMWGRH 243
           GA +   + +G   +D A   G  
Sbjct: 168 GADQSIKDNSGRTAMDYANQKGYT 191

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  109 bits (276), Expect = 4e-28
 Identities = 27/197 (13%), Positives = 54/197 (27%), Gaps = 61/197 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            + L  A  +   ++  +L +    V+  +            G T L+ A  N  +   +
Sbjct: 7   GALLEAANQRDTKKVKEILQDTTYQVDEVDT----------EGNTPLNIAVHNNDIEIAK 56

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   AD                                    +N       +    A 
Sbjct: 57  ALIDRGAD------------------------------------INLQNSISDSPYLYAG 80

Query: 163 LNGYFDCVQLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG- 220
             G  + +  +L     +++    +          G   L  AA  G++   ++LL  G 
Sbjct: 81  AQGRTEILAYMLKHATPDLNKHNRY----------GGNALIPAAEKGHIDNVKLLLEDGR 130

Query: 221 ASRMSLNCNGWLPLDVA 237
                 N  G+  L  A
Sbjct: 131 EDIDFQNDFGYTALIEA 147

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  104 bits (262), Expect = 3e-26
 Identities = 40/179 (22%), Positives = 64/179 (35%), Gaps = 58/179 (32%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           +SP  +A A+G  EI+A +L++   D+N  N            G  AL  AA  GH+   
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHNR----------YGGNALIPAAEKGHI--- 119

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL- 163
                        + +   +E  R D                ++   D G TAL  A   
Sbjct: 120 -------------DNVKLLLEDGRED----------------IDFQNDFGYTALIEAVGL 150

Query: 164 ----NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
                 Y D V+LL++  A+ S              +G T + +A   G  +  ++L  
Sbjct: 151 REGNQLYQDIVKLLMENGADQSIKD----------NSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 74.0 bits (183), Expect = 2e-15
 Identities = 20/151 (13%), Positives = 38/151 (25%), Gaps = 44/151 (29%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
               L  A      +   ++                   D                   V
Sbjct: 6   VGALLEAANQRDTKKVKEILQ------------------DTT--------YQ-------V 32

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           ++    G T L++A  N   +  + L+D  A+++                 +P  +A   
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSI----------SDSPYLYAGAQ 82

Query: 208 GNLKCCQVLLSRGASRM-SLNCNGWLPLDVA 237
           G  +    +L      +   N  G   L  A
Sbjct: 83  GRTEILAYMLKHATPDLNKHNRYGGNALIPA 113

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 63.6 bits (156), Expect = 6e-12
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 10/86 (11%)

Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
                 L  A         ++L D    V  V             G+TPL+ A    +++
Sbjct: 4   YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTE----------GNTPLNIAVHNNDIE 53

Query: 212 CCQVLLSRGASRMSLNCNGWLPLDVA 237
             + L+ RGA     N     P   A
Sbjct: 54  IAKALIDRGADINLQNSISDSPYLYA 79

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  111 bits (279), Expect = 2e-28
 Identities = 46/194 (23%), Positives = 72/194 (37%), Gaps = 26/194 (13%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            LH+A + GH EIV  LL+ G  VN ++           +G + LH AA  G    ++ +
Sbjct: 43  ALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AGWSPLHIAASAGXDEIVKAL 92

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   A                  +          +  A     +       TA+H AA  
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGA---NPDAKDHYDATAMHRAAAK 149

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM 224
           G    V +LL   A+ +               G+TPLH A     ++  + L+++GAS  
Sbjct: 150 GNLKMVHILLFYKASTNIQDTE----------GNTPLHLACDEERVEEAKFLVTQGASIY 199

Query: 225 SLNCNGWLPLDVAR 238
             N     PL VA+
Sbjct: 200 IENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  110 bits (277), Expect = 4e-28
 Identities = 41/206 (19%), Positives = 69/206 (33%), Gaps = 59/206 (28%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
              + A +   +E+   +L + +     +             RTALH+A   GH   +  
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQ----------DSRTALHWACSAGHTEIVEF 58

Query: 107 VV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++                                         VN   D G + LH+AA 
Sbjct: 59  LLQLGVP------------------------------------VNDKDDAGWSPLHIAAS 82

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR 223
            G  + V+ LL   A+V+AV  +          G TPLH+AA     +   +LL  GA+ 
Sbjct: 83  AGXDEIVKALLVKGAHVNAVNQN----------GCTPLHYAASKNRHEIAVMLLEGGANP 132

Query: 224 MSLNCNGWLPLDVARMWGRHWLEPLL 249
            + +      +  A   G   +  +L
Sbjct: 133 DAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 33/166 (19%), Positives = 50/166 (30%), Gaps = 49/166 (29%)

Query: 87  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
           S     + A           ++   +                                  
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSL--------------------------------- 32

Query: 144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
                +      TALH A   G+ + V+ LL L   V+               G +PLH 
Sbjct: 33  ---ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA----------GWSPLHI 79

Query: 204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           AA  G  +  + LL +GA   ++N NG  PL  A    RH +  +L
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 16/89 (17%), Positives = 30/89 (33%), Gaps = 10/89 (11%)

Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 208
           +     I   ++A      +  + +L   +  +                 T LH+A   G
Sbjct: 2   EGCVSNIMICNLAYSGKLDELKERILADKSLATRTDQD----------SRTALHWACSAG 51

Query: 209 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           + +  + LL  G      +  GW PL +A
Sbjct: 52  HTEIVEFLLQLGVPVNDKDDAGWSPLHIA 80

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
           L  A  +    EAK L+     +   +      +PL  A   G   ++   L  G + +
Sbjct: 176 LHLACDEERVEEAKFLVTQGASIYIENKEE--KTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  107 bits (271), Expect = 2e-28
 Identities = 30/168 (17%), Positives = 44/168 (26%), Gaps = 59/168 (35%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           +    +A   G  + V   +  G DVN               GR  LH+AA  G +  + 
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------GGRKPLHYAADCGQLEILE 57

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
            ++   AD                                    +N      IT L  A 
Sbjct: 58  FLLLKGAD------------------------------------INAPDKHHITPLLSAV 81

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
             G+  CV+LLL   A+ +               G T           
Sbjct: 82  YEGHVSCVKLLLSKGADKTVKGPD----------GLTAFEATDNQAIK 119

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 92.8 bits (232), Expect = 6e-23
 Identities = 31/153 (20%), Positives = 51/153 (33%), Gaps = 49/153 (32%)

Query: 88  GRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 144
                 +A  NG +  ++  V    D                                  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGED---------------------------------- 32

Query: 145 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA 204
             VN+  +GG   LH AA  G  + ++ LL   A+++A   H            TPL  A
Sbjct: 33  --VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKH----------HITPLLSA 80

Query: 205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
              G++ C ++LLS+GA +     +G    +  
Sbjct: 81  VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 85.5 bits (213), Expect = 2e-20
 Identities = 37/176 (21%), Positives = 52/176 (29%), Gaps = 63/176 (35%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN 58
            S          + A ++GD  E K  +    D N         G    PLH+AA  G  
Sbjct: 4   GSMCDKE----FMWALKNGDLDEVKDYVAKGEDVN---RT-LEGG--RKPLHYAADCGQL 53

Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSV 115
           EI+  LL  GAD+N+ +              T L  A   GHV C++L++   AD     
Sbjct: 54  EILEFLLLKGADINAPDK----------HHITPLLSAVYEGHVSCVKLLLSKGAD----- 98

Query: 116 PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQ 171
                                                 G+TA            +Q
Sbjct: 99  -------------------------------KTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 68.6 bits (169), Expect = 2e-14
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
                  A  NG  D V+  +    +V+               G  PLH+AA  G L+  
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG----------GRKPLHYAADCGQLEIL 56

Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGR 242
           + LL +GA   + + +   PL  A   G 
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEGH 85

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  107 bits (271), Expect = 3e-28
 Identities = 39/176 (22%), Positives = 63/176 (35%), Gaps = 59/176 (33%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
              L  AA  G ++ V +L+ NGADVN+++            G T L+ A  +GH+  + 
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDE----------YGLTPLYLATAHGHLEIVE 64

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           +++   AD                                    VN     G T LH+AA
Sbjct: 65  VLLKNGAD------------------------------------VNAVDAIGFTPLHLAA 88

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
             G+ +  ++LL   A+V+A              G T    +   GN    ++L  
Sbjct: 89  FIGHLEIAEVLLKHGADVNAQDKF----------GKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 85.9 bits (214), Expect = 2e-20
 Identities = 48/168 (28%), Positives = 67/168 (39%), Gaps = 59/168 (35%)

Query: 14  LVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           L+ AAR G   E ++L+    D N   AK   +G   +PL+ A A GH EIV +LL+NGA
Sbjct: 18  LLEAARAGQDDEVRILMANGADVN---AK-DEYG--LTPLYLATAHGHLEIVEVLLKNGA 71

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEG 126
           DVN+ +            G T LH AA  GH+    +++   AD                
Sbjct: 72  DVNAVDA----------IGFTPLHLAAFIGHLEIAEVLLKHGAD---------------- 105

Query: 127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL 174
                               VN     G TA  ++  NG  D  ++L 
Sbjct: 106 --------------------VNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 40/182 (21%), Positives = 65/182 (35%), Gaps = 66/182 (36%)

Query: 64  LLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVM 120
              +G+D+                    L  AA  G    +R+++   AD          
Sbjct: 7   HHHHGSDLG-----------------KKLLEAARAGQDDEVRILMANGAD---------- 39

Query: 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 180
                                     VN   + G+T L++A  +G+ + V++LL   A+V
Sbjct: 40  --------------------------VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

Query: 181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW 240
           +AV             G TPLH AA  G+L+  +VLL  GA   + +  G    D++   
Sbjct: 74  NAVDAI----------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGN 123

Query: 241 GR 242
           G 
Sbjct: 124 GN 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 11/93 (11%)

Query: 151 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
           +D G   L  AA  G  D V++L+   A+V+A   +          G TPL+ A   G+L
Sbjct: 12  SDLG-KKLLEAARAGQDDEVRILMANGADVNAKDEY----------GLTPLYLATAHGHL 60

Query: 211 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
           +  +VLL  GA   +++  G+ PL +A   G  
Sbjct: 61  EIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHL 93

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  104 bits (262), Expect = 2e-26
 Identities = 26/219 (11%), Positives = 51/219 (23%), Gaps = 61/219 (27%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFA----AAKGHNEIVALLLENGA 69
           + +AA  G + +   L +      +       ++ L+        +   +I   L+  GA
Sbjct: 10  VSAAAMLGTYEDFLELFEKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 129
           D+ SR             G T        G                  E+    +E  +G
Sbjct: 67  DIKSRTK----------EGTTLFFPLFQGGGNDITGTT----------ELCKIFLE--KG 104

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC------VQLLLDLH-ANVSA 182
                    D       +          +     N + D        +L+       +  
Sbjct: 105 --------AD-------ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI 149

Query: 183 VTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
                         G T L F          +++     
Sbjct: 150 KDKW----------GLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 93.6 bits (233), Expect = 2e-22
 Identities = 22/216 (10%), Positives = 54/216 (25%), Gaps = 63/216 (29%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
             +  AA  G  E    L E G +                  ++ + +  +  +    R 
Sbjct: 8   RTVSAAAMLGTYEDFLELFEKGYEDKESV------------LKSNILYDVLRNNNDEARY 55

Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
            ++ F+           I  ++G         D       +      G T        G 
Sbjct: 56  KISMFL-----------I--NKG--------AD-------IKSRTKEGTTLFFPLFQGGG 87

Query: 167 FD------CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ------ 214
            D        ++ L+  A+++A+                 +        +   +      
Sbjct: 88  NDITGTTELCKIFLEKGADITALYKP----------YKIVVFKNIFNYFVDENEMIPLYK 137

Query: 215 -VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
            +    G   +  +  G   L+  +   +     ++
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 88.6 bits (220), Expect = 1e-20
 Identities = 19/189 (10%), Positives = 49/189 (25%), Gaps = 52/189 (27%)

Query: 2   GNSFGCSASGERLVSAARDGDFVEAKMLLD--CNPCLAKYSTFGGLNSPLHFAAAKGHNE 59
            ++         L +   +  +  +  L++   +   ++ +  G   +        G N+
Sbjct: 38  KSNILYDV----LRNNNDEARYKISMFLINKGADIK-SR-TKEG--TTLFFPLFQGGGND 89

Query: 60  IVA------LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVP 113
           I        + LE GAD+ +               +  +     N       +   + +P
Sbjct: 90  ITGTTELCKIFLEKGADITALYK----------PYKIVVFKNIFNYF-----VDENEMIP 134

Query: 114 SVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLL 173
                                +S          +      G+TAL           ++++
Sbjct: 135 LYKLIF--------------SQSGLQ-------LLIKDKWGLTALEFVKRCQKPIALKMM 173

Query: 174 LDLHANVSA 182
            D     + 
Sbjct: 174 EDYIKKYNL 182

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 20/165 (12%), Positives = 42/165 (25%), Gaps = 46/165 (27%)

Query: 83  ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA 142
           ++ +S    +  AA+ G       +                       G   K    +S 
Sbjct: 1   SNAMSEYRTVSAAAMLGTYEDFLELFEK--------------------GYEDKESVLKSN 40

Query: 143 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 202
           +              L        +     L++  A++ + T            G+T   
Sbjct: 41  I----------LYDVLRNNNDEARYKISMFLINKGADIKSRTKE----------GTTLFF 80

Query: 203 FAACGGN------LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG 241
               GG        + C++ L +GA   +L     + +       
Sbjct: 81  PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 52.4 bits (126), Expect = 3e-08
 Identities = 3/30 (10%), Positives = 9/30 (30%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRN 75
            + L F         + ++ +     N + 
Sbjct: 155 LTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  100 bits (253), Expect = 7e-26
 Identities = 45/158 (28%), Positives = 60/158 (37%), Gaps = 59/158 (37%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA  GH E V  LL  GADVN+R+            G T LH AA NGH   ++L+
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGADVNARSK----------DGNTPLHLAAKNGHAEIVKLL 61

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                    VN  +  G T  H+A  N
Sbjct: 62  LAKGAD------------------------------------VNARSKDGNTPEHLAKKN 85

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 202
           G+ + V+LL    A+V+A ++            S   H
Sbjct: 86  GHHEIVKLLDAKGADVNARSWG----------SSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 89.0 bits (222), Expect = 1e-21
 Identities = 39/170 (22%), Positives = 62/170 (36%), Gaps = 61/170 (35%)

Query: 68  GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQI 124
           G    S++            G T LH AA NGH   ++ ++   AD              
Sbjct: 1   GHMWGSKD------------GNTPLHNAAKNGHAEEVKKLLSKGAD-------------- 34

Query: 125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT 184
                                 VN  +  G T LH+AA NG+ + V+LLL   A+V+A +
Sbjct: 35  ----------------------VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS 72

Query: 185 FHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL 234
                       G+TP H A   G+ +  ++L ++GA   + +       
Sbjct: 73  KD----------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 10/96 (10%)

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
              +  G T LH AA NG+ + V+ LL   A+V+A +            G+TPLH AA  
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD----------GNTPLHLAAKN 52

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
           G+ +  ++LL++GA   + + +G  P  +A+  G H
Sbjct: 53  GHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHH 88

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score =  106 bits (265), Expect = 1e-25
 Identities = 38/218 (17%), Positives = 70/218 (32%), Gaps = 52/218 (23%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH---VR 102
           N+PLH+  +  + E+V  L+++G++    +  G+          + L  A  + +     
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE----------SCLVKAVKSVNNYDSG 181

Query: 103 CIRLVVADFVPSVPFEVMNTQ-------------IEGDRGDGSSVKSKCDQSALSKFVNK 149
               ++    P +       +               G  G  ++ K   D   +   V K
Sbjct: 182 TFEALLDYLYPCL-----ILEDSMNRTILHHIIITSGMTGCSAAAKYYLD-ILMGWIVKK 235

Query: 150 AA------DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA----GST 199
                        +          D +   LDL   ++           ++ A    G T
Sbjct: 236 QNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIAN----------MLNAQDSNGDT 285

Query: 200 PLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
            L+ AA  GN+     LL  GA     N +G  P+D  
Sbjct: 286 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.2 bits (218), Expect = 2e-19
 Identities = 29/179 (16%), Positives = 49/179 (27%), Gaps = 40/179 (22%)

Query: 47  SPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---- 98
           S L  A    +N       ALL      +   +             RT LH   +     
Sbjct: 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS----------MNRTILHHIIITSGMT 215

Query: 99  GHVRCIRL---VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSA---------LSKF 146
           G     +    ++  ++       + +         +    +   S          ++  
Sbjct: 216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 275

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
           +N     G T L++AA  G    V  LLD  A+                 G  P+ F A
Sbjct: 276 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS----------GLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.9 bits (155), Expect = 2e-11
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA 96
           ++ L+ AA  G+  IV  LL+ GAD    N           SG   + F A
Sbjct: 284 DTCLNIAARLGNISIVDALLDYGADPFIANK----------SGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.9 bits (142), Expect = 9e-10
 Identities = 19/174 (10%), Positives = 38/174 (21%), Gaps = 63/174 (36%)

Query: 46  NSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           N      +      E+         ++N           D   G T LH+     ++  +
Sbjct: 97  NQQQQHVSFDSLLQEVNDAFPNTQLNLN--------IPVDE-HGNTPLHWLTSIANLELV 147

Query: 105 RLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMA 161
           + +V   ++                                         + G + L  A
Sbjct: 148 KHLVKHGSN------------------------------------RLYGDNMGESCLVKA 171

Query: 162 ALNG---YFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK 211
             +         + LLD L+  +                  T LH       + 
Sbjct: 172 VKSVNNYDSGTFEALLDYLYPCLILEDSM----------NRTILHHIIITSGMT 215

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 7e-08
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 208
           +         H++  +   +      +   N++     +G         +TPLH+     
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG---------NTPLHWLTSIA 142

Query: 209 NLKCCQVLLSRGASRMSLNCNGWLPLDVA 237
           NL+  + L+  G++R+  +  G   L  A
Sbjct: 143 NLELVKHLVKHGSNRLYGDNMGESCLVKA 171

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 93.4 bits (233), Expect = 2e-23
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 62/168 (36%)

Query: 52  AAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVV--- 108
            ++  H+   + L+  G+ + S                  L  AA  G    +R+++   
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGSD-------------LGKKLLEAARAGQDDEVRILMANG 47

Query: 109 ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD 168
           AD                                    V      G T LH+AA NG+ +
Sbjct: 48  AD------------------------------------VAAKDKNGSTPLHLAARNGHLE 71

Query: 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
            V+LLL+  A+V A              G T    +   GN    ++L
Sbjct: 72  VVKLLLEAGADVXAQDKF----------GKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 78.4 bits (194), Expect = 6e-18
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 11/107 (10%)

Query: 143 LSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 202
           + +  +  +D G   L  AA  G  D V++L+   A+V+A   +          GSTPLH
Sbjct: 14  VPRGSHMGSDLG-KKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLH 62

Query: 203 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
            AA  G+L+  ++LL  GA   + +  G    D++   G   L  +L
Sbjct: 63  LAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 77.6 bits (192), Expect = 1e-17
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 49/131 (37%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
              L  AA  G ++ V +L+ NGADV +++           +G T LH AA NGH+  ++
Sbjct: 25  GKKLLEAARAGQDDEVRILMANGADVAAKDK----------NGSTPLHLAARNGHLEVVK 74

Query: 106 LVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
           L++   AD                                    V      G TA  ++ 
Sbjct: 75  LLLEAGAD------------------------------------VXAQDKFGKTAFDISI 98

Query: 163 LNGYFDCVQLL 173
            NG  D  ++L
Sbjct: 99  DNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 55.3 bits (134), Expect = 8e-10
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 13/77 (16%)

Query: 161 AALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG 220
            + + +      L+   +++ +                  L  AA  G     ++L++ G
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS-------------DLGKKLLEAARAGQDDEVRILMANG 47

Query: 221 ASRMSLNCNGWLPLDVA 237
           A   + + NG  PL +A
Sbjct: 48  ADVAAKDKNGSTPLHLA 64

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 91.3 bits (228), Expect = 1e-22
 Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 49/131 (37%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH AA  GH E+V LLLE GADVN+++           +GRT LH AA NGH+  ++L+
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKLL 54

Query: 108 V---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
           +   AD                                    VN     G T LH+AA N
Sbjct: 55  LEAGAD------------------------------------VNAKDKNGRTPLHLAARN 78

Query: 165 GYFDCVQLLLD 175
           G+ + V+LLL+
Sbjct: 79  GHLEVVKLLLE 89

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 80.5 bits (200), Expect = 6e-19
 Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 49/138 (35%)

Query: 87  SGRTALHFAAVNGHVRCIRLVV---ADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSAL 143
           +GRT LH AA NGH+  ++L++   AD                                 
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD--------------------------------- 27

Query: 144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF 203
              VN     G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH 
Sbjct: 28  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHL 74

Query: 204 AACGGNLKCCQVLLSRGA 221
           AA  G+L+  ++LL  GA
Sbjct: 75  AARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 72.4 bits (179), Expect = 4e-16
 Identities = 34/88 (38%), Positives = 49/88 (55%), Gaps = 10/88 (11%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G T LH+AA NG+ + V+LLL+  A+V+A   +          G TPLH AA  G+L+  
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVV 51

Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWG 241
           ++LL  GA   + + NG  PL +A   G
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLAARNG 79

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 43.1 bits (103), Expect = 1e-05
 Identities = 15/22 (68%), Positives = 16/22 (72%)

Query: 48 PLHFAAAKGHNEIVALLLENGA 69
          PLH AA  GH E+V LLLE GA
Sbjct: 71 PLHLAARNGHLEVVKLLLEAGA 92

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 95.8 bits (238), Expect = 1e-21
 Identities = 32/215 (14%), Positives = 55/215 (25%), Gaps = 60/215 (27%)

Query: 46  NSPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVR 102
                 AA  G +   + + LLL +   V                   A   AA NGH+ 
Sbjct: 93  EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------ENYQAFRLAAENGHL- 141

Query: 103 CIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA 162
                           V              +   C+ +         A+    A  +AA
Sbjct: 142 ---------------HV--------------LNRLCELAPTEIMAMIQAENY-HAFRLAA 171

Query: 163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG-GNLKCCQVLLSRGA 221
            NG+   +  L +L    +                     +AA G G+      LL    
Sbjct: 172 ENGHLHVLNRLCELAPTEATAMIQ--------AENYYAFRWAAVGRGHHNVINFLLDCPV 223

Query: 222 SRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 256
                  +          +G  ++ P +A   + +
Sbjct: 224 MLAYAEIH-------EFEYGEKYVNPFIARHVNRL 251

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 93.1 bits (231), Expect = 7e-21
 Identities = 37/251 (14%), Positives = 62/251 (24%), Gaps = 40/251 (15%)

Query: 14  LVSAARDG--DFVEAKMLLDC--NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
              AA +G    +    L +      +A              AA  GH  ++  L E   
Sbjct: 132 FRLAAENGHLHVL--NRLCELAPTEIMAMIQAEN--YHAFRLAAENGHLHVLNRLCELAP 187

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAV-NGHVRCIRLVV---ADFVPSVPFEVMNTQIE 125
              +     +           A  +AAV  GH   I  ++        +   E    +  
Sbjct: 188 TEATAMIQAE--------NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKY 239

Query: 126 -----GDRGDGSSVKSKCDQSALSKFV-----NKAADGGITALHMAALNGYFDCVQLLLD 175
                    +         + +    V           G   L           +  +  
Sbjct: 240 VNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 299

Query: 176 LHANVSAVTFHYGTSMDLI-GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL-- 232
           L   +S            I G  +  L  A   GN   C +LLS  +       N +   
Sbjct: 300 L---LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYIN 356

Query: 233 ----PLDVARM 239
                LD+  +
Sbjct: 357 ETGGRLDLRAV 367

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 86.5 bits (214), Expect = 1e-18
 Identities = 26/197 (13%), Positives = 47/197 (23%), Gaps = 54/197 (27%)

Query: 27  KMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYL 86
            +LL  +  +               AA  GH  ++  L E            +       
Sbjct: 112 CLLLTSDEIVKVIQAEN--YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE------- 162

Query: 87  SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKF 146
               A   AA NGH+                 V              +   C+ +     
Sbjct: 163 -NYHAFRLAAENGHL----------------HV--------------LNRLCELAPTEAT 191

Query: 147 VNKAADGGITALHMAAL-NGYFDCVQLLLDLHANVSA------------VTFHYGTSMDL 193
               A+    A   AA+  G+ + +  LLD    ++             V       ++ 
Sbjct: 192 AMIQAENY-YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNR 250

Query: 194 IGAGSTPLHFAACGGNL 210
           +         +   G  
Sbjct: 251 LKEMHDAFKLSNPDGVF 267

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 71.9 bits (176), Expect = 8e-14
 Identities = 21/187 (11%), Positives = 42/187 (22%), Gaps = 25/187 (13%)

Query: 53  AAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV 112
               + E + + L    ++                    L++A  N + + +        
Sbjct: 42  MTLSYKEAIHIFLPGTKNMEQVR------------QLLCLYYAHYNRNAKQLWSDAHKKG 89

Query: 113 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 172
                      I G      ++        +   V         A  +AA NG+   +  
Sbjct: 90  IKSEVICFVAAITGCSSALDTLCLLLTSDEI---VKVIQAENYQAFRLAAENGHLHVLNR 146

Query: 173 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN--G 230
           L +L                           AA  G+L     L     +  +       
Sbjct: 147 LCELAPTEIMAMIQAE--------NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 198

Query: 231 WLPLDVA 237
           +     A
Sbjct: 199 YYAFRWA 205

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.6 bits (126), Expect = 1e-07
 Identities = 13/55 (23%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH 100
           N  L  A   G+    ALLL   + +                GR  L   A+  H
Sbjct: 320 NELLRLALRLGNQGACALLLSIPSVLALTKANNYYINET--GGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 23/190 (12%), Positives = 44/190 (23%), Gaps = 40/190 (21%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             +A   G       LLDC   L                   G   +   +  +   +  
Sbjct: 203 RWAAVGRGHHNVINFLLDCPVML---------AYAEIHEFEYGEKYVNPFIARHVNRLKE 253

Query: 74  RNYCGQ----------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ 123
            +   +          VT+++ L G   L           + L    F+ S+P       
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE--VLLDDIRFLLSIPGIKALAP 311

Query: 124 IEGDRGDGSS-------------VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV 170
                GD +                      ++               ++    G  D  
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA------NNYYINETGGRLDLR 365

Query: 171 QLLLDLHANV 180
            + L+ H + 
Sbjct: 366 AVALEHHHHH 375

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 13/99 (13%)

Query: 154 GITALHMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
             TALH+A  +        V  L+    N+   T            GST LH+     N 
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK----------GSTALHYCCLTDNA 218

Query: 211 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           +C ++LL   AS    N +G  PLD+A+       E LL
Sbjct: 219 ECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELL 257

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.6 bits (131), Expect = 2e-08
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 13  RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
            L   + D   +     L  N       T  G ++ LH+     + E + LLL   A + 
Sbjct: 174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKG-STALHYCCLTDNAECLKLLLRGKASIE 232

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
             N           SG T L  A    H  C  L
Sbjct: 233 IANE----------SGETPLDIAKRLKHEHCEEL 256

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 27/179 (15%), Positives = 52/179 (29%), Gaps = 50/179 (27%)

Query: 8   SASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKG---HNEI 60
           +A    L  A +  D            D    +   +      + LH A          I
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 187

Query: 61  VALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 120
           V  L++N  +++ +             G TALH+  +  +  C++L+             
Sbjct: 188 VDFLVQNSGNLDKQT----------GKGSTALHYCCLTDNAECLKLL------------- 224

Query: 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN 179
                        ++ K      ++        G T L +A    +  C +LL    + 
Sbjct: 225 -------------LRGKASIEIANE-------SGETPLDIAKRLKHEHCEELLTQALSG 263

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 43.4 bits (102), Expect = 9e-05
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 10/83 (12%)

Query: 147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC 206
           ++K    G TALH   L    +C++LLL   A++               +G TPL  A  
Sbjct: 198 LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN----------ESGETPLDIAKR 247

Query: 207 GGNLKCCQVLLSRGASRMSLNCN 229
             +  C ++L    + R + + +
Sbjct: 248 LKHEHCEELLTQALSGRFNSHVH 270

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 27/140 (19%), Positives = 41/140 (29%), Gaps = 13/140 (9%)

Query: 113 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY---FDC 169
              P  +       D        +             A       LH+A           
Sbjct: 149 TPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPL 208

Query: 170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN 229
           V  ++    ++ A              G+T LH+AA      C ++LL   A   ++N  
Sbjct: 209 VDFIIQNGGHLDAKAAD----------GNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 258

Query: 230 GWLPLDVARMWGRHWLEPLL 249
           G   LD+AR       E LL
Sbjct: 259 GETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.8 bits (129), Expect = 4e-08
 Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 46/136 (33%)

Query: 47  SPLHFAAAKGHN---EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
             LH A    +     +V  +++NG  ++++             G TALH+AA+     C
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA----------DGNTALHYAALYNQPDC 241

Query: 104 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++L++                          K +     +++        G TAL +A  
Sbjct: 242 LKLLL--------------------------KGRALVGTVNE-------AGETALDIARK 268

Query: 164 NGYFDCVQLLLDLHAN 179
             + +C +LL    A 
Sbjct: 269 KHHKECEELLEQAQAG 284

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 52.3 bits (125), Expect = 1e-07
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 15  VSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSR 74
           V  A          ++  N          G N+ LH+AA     + + LLL+  A V + 
Sbjct: 198 VKVANQASLPLVDFII-QNGGHLDAKAADG-NTALHYAALYNQPDCLKLLLKGRALVGTV 255

Query: 75  NYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           N           +G TAL  A    H  C  L
Sbjct: 256 NE----------AGETALDIARKKHHKECEEL 277

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 57.2 bits (138), Expect = 5e-09
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 13/99 (13%)

Query: 154 GITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL 210
               LH+A           V  ++    ++ A              G+T LH+AA     
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAAD----------GNTALHYAALYNQP 220

Query: 211 KCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
            C ++LL   A   ++N  G   LD+AR       E LL
Sbjct: 221 DCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 54.1 bits (130), Expect = 6e-08
 Identities = 22/107 (20%), Positives = 40/107 (37%), Gaps = 17/107 (15%)

Query: 7   CSASGERLVSAARDGDFVEAKMLL----DCNPCLAKYSTFGGLNSPLHFAAAKGHN---E 59
           C+   +RL +A  + D +          D    L            LH A    +     
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188

Query: 60  IVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           +V  +++NG  ++++             G TALH+AA+     C++L
Sbjct: 189 LVDFIIQNGGHLDAKAA----------DGNTALHYAALYNQPDCLKL 225

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N+ LH+AA     + + LLL+  A V + N           +G TAL  A    H  C  
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNE----------AGETALDIARKKHHKECEE 257

Query: 106 LV 107
           L+
Sbjct: 258 LL 259

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 56.3 bits (135), Expect = 9e-09
 Identities = 24/96 (25%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
             T L  A         + LL   ANV+               G  PLH A   G+    
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSA----------GRGPLHHATILGHTGLA 284

Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
            + L RGA   + +  G  PL +A       +  LL
Sbjct: 285 CLFLKRGADLGARDSEGRDPLTIAMETANADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.1 bits (111), Expect = 7e-06
 Identities = 33/179 (18%), Positives = 47/179 (26%), Gaps = 45/179 (25%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
             ++            L     +   +      +PL  A A         LL+NGA+VN 
Sbjct: 204 FRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ 263

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
            +           +GR  LH A + GH     L                           
Sbjct: 264 AD----------SAGRGPLHHATILGHTGLACLF-------------------------- 287

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMD 192
           +K   D  A           G   L +A      D V LL    A +       G + D
Sbjct: 288 LKRGADLGARDS-------EGRDPLTIAMETANADIVTLL--RLAKMREAEAAQGQAGD 337

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	489
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.98
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.97
2rfa_A	232	Transient receptor potential cation channel subfa	99.97
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.96
2etb_A	256	Transient receptor potential cation channel subfam	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.9
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.9
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.2
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.17
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.13
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.86
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.8
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.8
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	97.67
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	97.58
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	97.57
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	97.56
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	97.54
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	97.51
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	97.47
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	97.46
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	97.45
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	97.43
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	97.4
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	97.38
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	97.37
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	97.35
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	97.33
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	97.27
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	97.23
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	97.23
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	97.21
2ect_A	78	Ring finger protein 126; metal binding protein, st	97.19
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	97.18
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	97.18
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	97.16
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	97.15
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	97.13
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	97.08
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	97.08
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	97.07
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	97.04
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	97.02
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	96.91
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	96.91
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	96.83
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	96.8
1z6u_A	150	NP95-like ring finger protein isoform B; structura	96.72
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	96.71
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	96.62
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	96.59
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	96.56
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	96.43
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	96.42
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	96.42
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	96.38
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	96.38
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	96.24
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	96.09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	95.59
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	95.58
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	95.47
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	95.0
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	94.86
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	94.76
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.75
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.69
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	94.35
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	94.27
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	94.05
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	91.84
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	91.84
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	91.63
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	88.61

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8e-37  Score=298.40  Aligned_cols=236  Identities=22%  Similarity=0.190  Sum_probs=180.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCC---CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPC---LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYL   86 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~---l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~   86 (489)
                      ..||||+|++.|+.++|++|++.|++   ++..+..  |+||||+|+..|+.++|++|+++|++++.+|.          
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------   76 (282)
T 1oy3_D            9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL--GQTALHLAAILGEASTVEKLYAAGAGVLVAER----------   76 (282)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTT--SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT----------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------
Confidence            45789999999999999999999988   4554444  49999999999999999999999999999998          


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccc----------------ccccccCCchhhhhhhhhhhhhhhhccc
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT----------------QIEGDRGDGSSVKSKCDQSALSKFVNKA  150 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l----------------~~~~~~~~~~~~~~~~~~~~~~~~in~~  150 (489)
                      .|+||||+|+..|+.+++++|++.+...........                .........  .............++..
T Consensus        77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  154 (282)
T 1oy3_D           77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE--NEEEPRDEDWRLQLEAE  154 (282)
T ss_dssp             TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------------------------------------CCCGGGGTTCC
T ss_pred             CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc--hhhhhhhhhhhhcCCCc
Confidence            999999999999999999999987654222111100                000000000  00001111223457889


Q ss_pred             cCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 011309          151 ADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG  230 (489)
Q Consensus       151 d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G  230 (489)
                      +..|.||||+|+..|+.++|++|+++|++++..+..         .|.||||+|+..|+.++|++|+++|++++.+|..|
T Consensus       155 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~---------~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  225 (282)
T 1oy3_D          155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (282)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC---------CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCC
Confidence            999999999999999999999999999999998743         29999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHH
Q 011309          231 WLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       231 ~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~  272 (489)
                      +||||+|+..|+.+++++|.+. ++++..    +..+.+|+..
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~----~~~g~tpl~~  264 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLRAHGAPEPED----GGDKLSPCSS  264 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHHHTTCCCCCC----C---------
T ss_pred             CCHHHHHHHcCCcHHHHHHHHcCCCcCcC----CCcccccccc
Confidence            9999999999999998877654 554443    4556677553

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.8e-36  Score=291.48  Aligned_cols=221  Identities=24%  Similarity=0.206  Sum_probs=144.3

Q ss_pred             CchHHHHHHHHcC-------------CHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcC
Q 011309            9 ASGERLVSAARDG-------------DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN   75 (489)
Q Consensus         9 ~s~t~L~~Aa~~G-------------~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d   75 (489)
                      ...||||+|+..|             +.++|++|++.|++++...+. .|+||||+|+..|+.++|++|+++|++++..|
T Consensus         9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~   87 (253)
T 1yyh_A            9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADANIQD   87 (253)
T ss_dssp             -------------------------------------------CCCT-TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            3467899999987             999999999999998654322 34999999999999999999999999999999


Q ss_pred             CCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccC----CCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc
Q 011309           76 YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV----PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA  151 (489)
Q Consensus        76 ~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d  151 (489)
                      .          .|+||||+|+..|+.+++++|++.+.    ..+..+.++++.+...+....+..+...   +..++..|
T Consensus        88 ~----------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~d  154 (253)
T 1yyh_A           88 N----------MGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVD  154 (253)
T ss_dssp             T----------TSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT---TCCTTCBC
T ss_pred             C----------CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc---CCCCCCcC
Confidence            8          99999999999999999999998754    2233455666666666665555554432   33466677


Q ss_pred             CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309          152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGW  231 (489)
Q Consensus       152 ~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~  231 (489)
                      ..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+
T Consensus       155 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~  224 (253)
T 1yyh_A          155 DLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDR  224 (253)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCC
Confidence            77777777777777777777777777777777655          77777777777777777777777777777777777


Q ss_pred             cHHHHHHHcCcHhHHHHhcCCC
Q 011309          232 LPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       232 TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      |||++|++.|+.+|+.+|....
T Consensus       225 tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          225 LPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             CHHHHHHHTTCHHHHHHHHC--
T ss_pred             CHHHHHHHcCCHHHHHHHHHHh
Confidence            7777777777777777775544

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=6.3e-35  Score=276.00  Aligned_cols=194  Identities=29%  Similarity=0.289  Sum_probs=179.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCC-CCCCcCCCCCcccccCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Ga-d~n~~d~~g~i~~~d~~~G   88 (489)
                      ..||||+|++.|+.++|++|++.|++++..+..+  +||||+|+..|+.+++++|+++++ +++..+.          .|
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----------~g   92 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADANIQDNMG--RTPLHAAVSADAQGVFQILIRNRATDLDARMH----------DG   92 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCT----------TC
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CC
Confidence            4579999999999999999999999988776655  899999999999999999999987 8888887          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.+
T Consensus        93 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  139 (223)
T 2f8y_A           93 TTPLILAARLAVEGMLEDLINSHAD---------------------------------VNAVDDLGKSALHWAAAVNNVD  139 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCBCTTSCBHHHHHHHTTCHH
T ss_pred             CcHHHHHHHhCcHHHHHHHHHcCCC---------------------------------CcCcCCCCCcHHHHHHHcCCHH
Confidence            9999999999999999999986543                                 7778889999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL  248 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L  248 (489)
                      ++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++
T Consensus       140 ~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~  209 (223)
T 2f8y_A          140 AAVVLLKNGANKDMQNNR----------EETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL  209 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCC----------CcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHH
Confidence            999999999999999876          9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCC
Q 011309          249 LAPSSDAVMP  258 (489)
Q Consensus       249 L~~~~~~~~~  258 (489)
                      |.+.+....+
T Consensus       210 L~~~g~~~~~  219 (223)
T 2f8y_A          210 LDEYNLVRSP  219 (223)
T ss_dssp             HHHTTCSSCC
T ss_pred             HHHcCCCccc
Confidence            9887765433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=6.5e-35  Score=271.44  Aligned_cols=191  Identities=25%  Similarity=0.270  Sum_probs=175.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      ...++||.|+..|+.+.|+.|++.+. +++..+..+  +||||+|+..|+.++|++|+++|++++..+.          .
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~   71 (201)
T 3hra_A            4 YEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEG--NTPLNIAVHNNDIEIAKALIDRGADINLQNS----------I   71 (201)
T ss_dssp             CCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------T
T ss_pred             ccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------C
Confidence            45678999999999999999999887 777666554  9999999999999999999999999999998          8


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |.||||+|+..|+.+++++|++.+.                                ..++..|..|.||||+|+..|+.
T Consensus        72 g~t~l~~A~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~~~  119 (201)
T 3hra_A           72 SDSPYLYAGAQGRTEILAYMLKHAT--------------------------------PDLNKHNRYGGNALIPAAEKGHI  119 (201)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSC--------------------------------CCTTCCCTTSCCSHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccC--------------------------------cccccccCCCCcHHHHHHHcCCH
Confidence            9999999999999999999995432                                12778888999999999999999


Q ss_pred             HHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309          168 DCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN-----LKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  241 (489)
Q Consensus       168 e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~-----~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g  241 (489)
                      +++++|+++| ++++..+..          |.||||+|+..++     .+++++|+++|++++.+|..|+||||+|+..|
T Consensus       120 ~~v~~Ll~~g~~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          120 DNVKLLLEDGREDIDFQNDF----------GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             HHHHHHHHHCCCCTTCCCTT----------SCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCcCCCCCC----------CCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcC
Confidence            9999999999 999999876          9999999999998     99999999999999999999999999999999


Q ss_pred             cHhHHHHhcCCC
Q 011309          242 RHWLEPLLAPSS  253 (489)
Q Consensus       242 ~~~i~~LL~~~~  253 (489)
                      +.+++++|.+.+
T Consensus       190 ~~~~~~~Ll~~G  201 (201)
T 3hra_A          190 YTEISKILAQYN  201 (201)
T ss_dssp             CHHHHHHHHTCC
T ss_pred             CHhHHHHHHhcC
Confidence            999999997653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7e-35  Score=278.24  Aligned_cols=205  Identities=27%  Similarity=0.316  Sum_probs=181.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||.|+..|+.++|++|++.|++++..+..+  .||||+|+..|+.++|++|+++|++++..+.          .|.
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~   78 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ--RTPLMEAAENNHLEAVKYLIKAGALVDPKDA----------EGS   78 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHTTTCCCCCCCT----------TSC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCC--CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC----------CCC
Confidence            4578999999999999999999999988877665  8999999999999999999999999999998          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+.                                ..++..+..|.||||+|+..|+.++
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~  126 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQ--------------------------------MDVNCQDDGGWTPMIWATEYKHVDL  126 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTC--------------------------------CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCC--------------------------------CCcccCCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999997641                                1167778899999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  249 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL  249 (489)
                      +++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       127 ~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  196 (237)
T 3b7b_A          127 VKLLLSKGSDINIRDNE----------ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF  196 (237)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCCCCccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHH
Confidence            99999999999988876          99999999999999999999999999999999999999999999999988777


Q ss_pred             cCC-CCCCCCCCCCCCCcchhhHH
Q 011309          250 APS-SDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       250 ~~~-~~~~~~~~~~~~~~~~pl~~  272 (489)
                      .+. ++.+..    +..+.+|++.
T Consensus       197 l~~gad~~~~----d~~g~t~l~~  216 (237)
T 3b7b_A          197 LSRDSDVTLK----NKEGETPLQC  216 (237)
T ss_dssp             HTTTCCTTCC----CTTSCCHHHH
T ss_pred             HHcCCCCCcc----CCCCCCHHHH
Confidence            654 444443    4555666543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=8.2e-35  Score=276.70  Aligned_cols=207  Identities=29%  Similarity=0.318  Sum_probs=178.4

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      .+.++||.|++.|+++.|++|++.++...... +..|.||||+|+..|+.++|++|+++|++++..|.          .|
T Consensus         5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g   73 (231)
T 3aji_A            5 VSNIMICNLAYSGKLDELKERILADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AG   73 (231)
T ss_dssp             CSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----------TS
T ss_pred             cccchHHHHHHhCCHHHHHHHHHhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCC----------CC
Confidence            35789999999999999999999887643322 23349999999999999999999999999999998          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      +||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.+
T Consensus        74 ~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  120 (231)
T 3aji_A           74 WSPLHIAASAGXDEIVKALLVKGAH---------------------------------VNAVNQNGCTPLHYAASKNRHE  120 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCHHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999987543                                 6777888999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL  248 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L  248 (489)
                      ++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus       121 ~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  190 (231)
T 3aji_A          121 IAVMLLEGGANPDAKDHY----------DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF  190 (231)
T ss_dssp             HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence            999999999999988866          8999999999999999999999999999999999999999999999998877


Q ss_pred             hcCC-CCCCCCCCCCCCCcchhhHHH
Q 011309          249 LAPS-SDAVMPRFHPSNYLSLPLLSV  273 (489)
Q Consensus       249 L~~~-~~~~~~~~~~~~~~~~pl~~~  273 (489)
                      |.+. ++.+..    +..+.+|+..+
T Consensus       191 Ll~~ga~~~~~----~~~g~t~l~~A  212 (231)
T 3aji_A          191 LVTQGASIYIE----NKEEKTPLQVA  212 (231)
T ss_dssp             HHHTTCCSCCC----CTTSCCHHHHS
T ss_pred             HHHCCCCCCCC----CCCCCCHHHHH
Confidence            7654 444333    45566775543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=100.00  E-value=5.2e-36  Score=305.44  Aligned_cols=260  Identities=15%  Similarity=0.100  Sum_probs=195.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .||||+||..|++++|++||+.|++++..+..+  .||||+|+..|+.++|++|+++|++++..            .|.|
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~------------~g~t   86 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFG--CTALHLACKFGCVDTAKYLASVGEVHSLW------------HGQK   86 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHCCHHHHHHHHHHCCCCCCB------------TTBC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CcHHHHHHHcCCHHHHHHHHHCCCCcccc------------CCCC
Confidence            589999999999999999999999998877665  99999999999999999999999977653            6899


Q ss_pred             HHHHHHHcCCHHHHHHHHHc----cCC--------------------CCCccccccccccccC--Cchhhhhhhhhhhhh
Q 011309           91 ALHFAAVNGHVRCIRLVVAD----FVP--------------------SVPFEVMNTQIEGDRG--DGSSVKSKCDQSALS  144 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~----~~~--------------------~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~  144 (489)
                      |||+|+..|+.++|++|++.    +..                    .+..+.++++.+...+  ....+..+...   +
T Consensus        87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~---g  163 (364)
T 3ljn_A           87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL---G  163 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH---T
T ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc---C
Confidence            99999999999999999986    332                    2224566777777766  55555554433   4


Q ss_pred             hhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCC-----cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309          145 KFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN-----VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  219 (489)
Q Consensus       145 ~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gad-----vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  219 (489)
                      ..++..|..|.||||+|+..|+.++|++|+++|++     ++..+..          |.||||+|+..|+.++|++||++
T Consensus       164 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~  233 (364)
T 3ljn_A          164 ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ----------GNSHLHWAILINWEDVAMRFVEM  233 (364)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC----------CCcHHHHHHHcCCHHHHHHHHHc
Confidence            55778888888888888888888888888888888     7777765          88888888888888888888888


Q ss_pred             CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCCCCCCCCCCCCCcchhhHHHHHHHHHcCCccccccCCCC-cchhhh
Q 011309          220 GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDD-ADTCAV  298 (489)
Q Consensus       220 Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~~~~~a~~~~-~~~C~i  298 (489)
                      |+|++.+|.+|+||||+|+..|+.+++++|++.++.......+......+      .....+|+....+...+ .+.+..
T Consensus       234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~aa~~~~~~~v~~  307 (364)
T 3ljn_A          234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTV------LPDRVVWLDFVPAAADPSKQEVLQ  307 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSB------CGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccc------cccccccccchhhhhccCHHHHHH
Confidence            88888888888888888888888888877776543311100001111111      12346677666655444 455555


Q ss_pred             hhhhc
Q 011309          299 CLERA  303 (489)
Q Consensus       299 Cle~~  303 (489)
                      .+.+.
T Consensus       308 ll~~~  312 (364)
T 3ljn_A          308 LLQEK  312 (364)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.7e-35  Score=277.34  Aligned_cols=208  Identities=27%  Similarity=0.354  Sum_probs=180.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHhh----cCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309           10 SGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      ..||||+|++.|++++|++|++    .+.+++..+..+  .||||+|+..|+.+++++|+++|++++..+.         
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------   77 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR--QTPLHLAVITTLPSVVRLLVTAGASPMALDR---------   77 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccC--CCHHHHHHHcCCHHHHHHHHHcCCCccccCC---------
Confidence            3578999999999999999997    688887776655  9999999999999999999999999999998         


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  165 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g  165 (489)
                       .|.||||+|+..|+.+++++|++.+...                             ...++..|..|.||||+|+..|
T Consensus        78 -~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~  127 (241)
T 1k1a_A           78 -HGQTAAHLACEHRSPTCLRALLDSAAPG-----------------------------TLDLEARNYDGLTALHVAVNTE  127 (241)
T ss_dssp             -TSCCHHHHHHHTTCHHHHHHHHHHSCTT-----------------------------SCCTTCCCTTSCCHHHHHHHHT
T ss_pred             -CCCCHHHHHHHcCCHHHHHHHHHcCCCc-----------------------------cccccccCcCCCcHHHHHHHcC
Confidence             9999999999999999999999875421                             1126778889999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309          166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      +.+++++|+++|++++..+..         .|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++
T Consensus       128 ~~~~~~~Ll~~g~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~  198 (241)
T 1k1a_A          128 CQETVQLLLERGADIDAVDIK---------SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPL  198 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCccccccc---------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999988732         29999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC-CCCCCCCCCCCCCcchhhH
Q 011309          246 EPLLAPS-SDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       246 ~~LL~~~-~~~~~~~~~~~~~~~~pl~  271 (489)
                      +++|.+. ++++..    +..+.+|+.
T Consensus       199 v~~Ll~~ga~~~~~----~~~g~tpl~  221 (241)
T 1k1a_A          199 VRTLVRSGADSSLK----NCHNDTPLM  221 (241)
T ss_dssp             HHHHHHTTCCTTCC----CTTSCCTTT
T ss_pred             HHHHHhcCCCCCCc----CCCCCCHHH
Confidence            8777654 444443    344555544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=9.3e-35  Score=293.07  Aligned_cols=230  Identities=25%  Similarity=0.211  Sum_probs=182.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC-----------
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ-----------   79 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~-----------   79 (489)
                      .|+||.||+.|++++|++||++|++++..+..+ |+||||+|+..|+.++|++||++|++++.++..+.           
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~-g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  104 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGS  104 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC-CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhccc
Confidence            478999999999999999999999998776543 48999999999999999999999999998887655           


Q ss_pred             ------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC-------------ccccccccccccCCchhh
Q 011309           80 ------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-------------FEVMNTQIEGDRGDGSSV  134 (489)
Q Consensus        80 ------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~-------------~~~~~l~~~~~~~~~~~~  134 (489)
                                  .....+..|+||||+|+..|+.+++++|++.+...+.             .+.++++.+...+....+
T Consensus       105 ~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v  184 (337)
T 4g8k_A          105 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  184 (337)
T ss_dssp             HHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHH
T ss_pred             chhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHH
Confidence                        1223455899999999999999999999987764432             234566666666665555


Q ss_pred             hhhhhhhhhhhhhccccCCCccHHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCH
Q 011309          135 KSKCDQSALSKFVNKAADGGITALHMAALNGY----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  210 (489)
Q Consensus       135 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~----~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~  210 (489)
                      +.++..  .+..+|.+|..|.|+||.++..+.    .+++++|+++|++++.++..          |+||||+|+..|+.
T Consensus       185 ~~LL~~--~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~----------g~t~L~~a~~~~~~  252 (337)
T 4g8k_A          185 KILLDE--MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHL  252 (337)
T ss_dssp             HHHHHH--SCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCH
T ss_pred             HHHHhc--cCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHhhhh
Confidence            544322  234467777788888887776543    35778888888888877765          88999999999999


Q ss_pred             HHHHHHHHc-CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          211 KCCQVLLSR-GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       211 eivk~LL~~-Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      ++|++|++. |++++.+|.+|+||||+|+..|+.+++++|++.+
T Consensus       253 ~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          253 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             HHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             HHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999998874 8899999999999999999999998887776653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.7e-35  Score=276.94  Aligned_cols=206  Identities=26%  Similarity=0.317  Sum_probs=177.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCC--C-cCCCCCcccccCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN--S-RNYCGQVTRADYLS   87 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n--~-~d~~g~i~~~d~~~   87 (489)
                      .||||.|++.|+.++|++|++.+++.....+ ..|.||||+|+..|+.+++++|+++|++++  . .+.          .
T Consensus         3 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~----------~   71 (228)
T 2dzn_A            3 NYPLHQACMENEFFKVQELLHSKPSLLLQKD-QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD----------S   71 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCC-TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCT----------T
T ss_pred             ccHHHHHHHhCCHHHHHHHHhcCccccccCC-CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCC----------C
Confidence            4789999999999999999999988755322 234999999999999999999999995544  4 555          8


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |+||||+|+..|+.+++++|++.+..                               ..++..+..|.||||+|+..|+.
T Consensus        72 g~t~L~~A~~~~~~~~~~~Ll~~g~~-------------------------------~~~~~~~~~g~t~L~~A~~~~~~  120 (228)
T 2dzn_A           72 GWTPFHIACSVGNLEVVKSLYDRPLK-------------------------------PDLNKITNQGVTCLHLAVGKKWF  120 (228)
T ss_dssp             SCCHHHHHHHHCCHHHHHHHHSSSSC-------------------------------CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCC-------------------------------cccccCCcCCCCHHHHHHHcCCH
Confidence            99999999999999999999976521                               12677888999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      +++++|+++|++++..+..          |.||||+|+..|+.+++++|+++| ++++.+|..|+||||+|+..|+.+++
T Consensus       121 ~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v  190 (228)
T 2dzn_A          121 EVSQFLIENGASVRIKDKF----------NQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  190 (228)
T ss_dssp             HHHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999876          999999999999999999999999 99999999999999999999999998


Q ss_pred             HHhc-C-CCCCCCCCCCCCCCcchhhHH
Q 011309          247 PLLA-P-SSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       247 ~LL~-~-~~~~~~~~~~~~~~~~~pl~~  272 (489)
                      ++|. + +++.+..    +..+.+|+..
T Consensus       191 ~~Ll~~~ga~~~~~----~~~g~t~l~~  214 (228)
T 2dzn_A          191 VLLVEKYGAEYDLV----DNKGAKAEDV  214 (228)
T ss_dssp             HHHHHHHCCCSCCB----CTTSCBGGGG
T ss_pred             HHHHHhcCCCCCcc----CCCCCcHHHH
Confidence            8887 3 6665554    3445566543

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=8e-35  Score=277.25  Aligned_cols=203  Identities=25%  Similarity=0.276  Sum_probs=176.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCC-----CCcCCCCCccccc
Q 011309           11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV-----NSRNYCGQVTRAD   84 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~-----n~~d~~g~i~~~d   84 (489)
                      .||||.|++.|++++|++|++. |.+++..+..+  +||||+|+..|+.++|++|+++|+++     +..|.        
T Consensus         4 ~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~--------   73 (232)
T 2rfa_A            4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMG--ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY--------   73 (232)
T ss_dssp             TCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTT--------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC--CCHHHHHHHcCCHHHHHHHHHcCchhccccccccCC--------
Confidence            5789999999999999999998 88888876655  99999999999999999999999987     55565        


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309           85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  164 (489)
Q Consensus        85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  164 (489)
                        .|.||||+|+..|+.+++++|++.+..........                    .+....+..|..|.||||+|+..
T Consensus        74 --~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--------------------~~~~~~~~~~~~g~t~L~~A~~~  131 (232)
T 2rfa_A           74 --EGQTALHIAVINQNVNLVRALLARGASVSARATGS--------------------VFHYRPHNLIYYGEHPLSFAACV  131 (232)
T ss_dssp             --TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG--------------------GGSCCTTCSCCCCSSHHHHHHHH
T ss_pred             --CCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc--------------------ceeecccccccCCCCHHHHHHHc
Confidence              89999999999999999999999876543321110                    01112556778999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHH----HHHHHcCCCC------CccCCCCCcHH
Q 011309          165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC----QVLLSRGASR------MSLNCNGWLPL  234 (489)
Q Consensus       165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv----k~LL~~Gadv------n~~d~~G~TpL  234 (489)
                      |+.++|++|+++|++++..|..          |.||||+|+..|+.+++    ++|+++|+++      +.+|..|+|||
T Consensus       132 ~~~~~v~~Ll~~ga~~~~~d~~----------g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl  201 (232)
T 2rfa_A          132 GSEEIVRLLIEHGADIRAQDSL----------GNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF  201 (232)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHH
T ss_pred             CCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHH
Confidence            9999999999999999999976          99999999999999988    9999999998      58899999999


Q ss_pred             HHHHHcCcHhHHHHhcCCCCC
Q 011309          235 DVARMWGRHWLEPLLAPSSDA  255 (489)
Q Consensus       235 ~~A~~~g~~~i~~LL~~~~~~  255 (489)
                      |+|+..|+.+++++|++.+..
T Consensus       202 ~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          202 KLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCcc
Confidence            999999999999988776543

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=2e-34  Score=280.65  Aligned_cols=234  Identities=25%  Similarity=0.226  Sum_probs=194.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .++||.|++.|++++|++|++.|++++..... .|+||||+|+..|+.++|++|+++|++++..|.          .|.|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t   74 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEE-GGWTPLHNAVQMSREDIVELLLRHGADPVLRKK----------NGAT   74 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcccccCC-CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------CCCC
Confidence            57899999999999999999999988776333 348999999999999999999999999999887          8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccc----------cCCCccH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA----------ADGGITA  157 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~----------d~~G~Tp  157 (489)
                      |||+|+..|+.+++++|++.+...   +..+.++++.+...+....+..+....   ..++..          +..|.||
T Consensus        75 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---~~~~~~~~~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           75 PFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG---ANVNLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT---CCTTCCCCCCHHHHHTTCCCCCH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhC---CCcccccccHHHHHhhccCCCcH
Confidence            999999999999999999876543   456788888888888777666654432   223333          7789999


Q ss_pred             HHHHHHcCCHHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCCCccCCCCCc
Q 011309          158 LHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN----LKCCQVLLSRGASRMSLNCNGWL  232 (489)
Q Consensus       158 Lh~Aa~~g~~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~----~eivk~LL~~Gadvn~~d~~G~T  232 (489)
                      ||+|+..|+.+++++|++. |++++..+..          |.||||+|+..++    .+++++|+++|++++.+|..|+|
T Consensus       152 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~----------g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t  221 (285)
T 1wdy_A          152 LMDAAEKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKT  221 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTSCCCTTCCCTT----------SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred             HHHHHHcCCHHHHHHHHHhcCCCCCccCCC----------CCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCc
Confidence            9999999999999999987 9999998876          9999999999999    89999999999999999999999


Q ss_pred             HHHHHHHcCcHhHHHHhcC--CCCCCCCCCCCCCCcchhhHH
Q 011309          233 PLDVARMWGRHWLEPLLAP--SSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       233 pL~~A~~~g~~~i~~LL~~--~~~~~~~~~~~~~~~~~pl~~  272 (489)
                      |||+|+..|+.+++++|.+  +.+++..    +..+.+|++.
T Consensus       222 ~L~~A~~~~~~~~v~~Ll~~~g~~~~~~----~~~g~t~l~~  259 (285)
T 1wdy_A          222 PLILAVEKKHLGLVQRLLEQEHIEINDT----DSDGKTALLL  259 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHSSSCCTTCC----CTTSCCHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhccCCCcccc----CCCCCcHHHH
Confidence            9999999999999888875  4444433    4456677543

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=9.3e-35  Score=276.31  Aligned_cols=189  Identities=30%  Similarity=0.318  Sum_probs=176.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      ...||||+|+..|+.++|++|++.|++++..+..+  +||||+|+..|+.+++++|+++|++++..|.          .|
T Consensus        39 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g  106 (231)
T 3aji_A           39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WSPLHIAASAGXDEIVKALLVKGAHVNAVNQ----------NG  106 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCC--CCHHHHHHHcCHHHHHHHHHHcCCCCCCCCC----------CC
Confidence            34579999999999999999999999988776655  9999999999999999999999999999998          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.+
T Consensus       107 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  153 (231)
T 3aji_A          107 CTPLHYAASKNRHEIAVMLLEGGAN---------------------------------PDAKDHYDATAMHRAAAKGNLK  153 (231)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHcCCHH
Confidence            9999999999999999999986543                                 6778889999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL  248 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L  248 (489)
                      ++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++
T Consensus       154 ~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~l  223 (231)
T 3aji_A          154 MVHILLFYKASTNIQDTE----------GNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRL  223 (231)
T ss_dssp             HHHHHHHTTCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCccccCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHH
Confidence            999999999999999876          9999999999999999999999999999999999999999999999999999


Q ss_pred             hcCC
Q 011309          249 LAPS  252 (489)
Q Consensus       249 L~~~  252 (489)
                      |.+.
T Consensus       224 L~~~  227 (231)
T 3aji_A          224 AEGE  227 (231)
T ss_dssp             HHHH
T ss_pred             Hccc
Confidence            8653

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=6.7e-34  Score=276.98  Aligned_cols=225  Identities=24%  Similarity=0.205  Sum_probs=198.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.|++++..+..+  .||||+|+..|+.+++++|+++|++++..|.          .|+
T Consensus        39 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~  106 (285)
T 1wdy_A           39 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNG--ATPFLLAAIAGSVKLLKLFLSKGADVNECDF----------YGF  106 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT----------TCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCc----------ccC
Confidence            3579999999999999999999999988876665  8999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCC-------------CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCcc
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSV-------------PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT  156 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~-------------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T  156 (489)
                      ||||+|+..|+.+++++|++.+....             ..+.++++.+...+....+..+...  .+..++..|..|.|
T Consensus       107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~g~t  184 (285)
T 1wdy_A          107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE--MGADVNACDNMGRN  184 (285)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT--SCCCTTCCCTTSCC
T ss_pred             CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh--cCCCCCccCCCCCC
Confidence            99999999999999999999876553             3355777777777776666655433  13457888999999


Q ss_pred             HHHHHHHcCC----HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCC
Q 011309          157 ALHMAALNGY----FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGW  231 (489)
Q Consensus       157 pLh~Aa~~g~----~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~  231 (489)
                      |||+|+..++    .+++++|+++|++++..+..          |.||||+|+..|+.++|++|++ .|++++.+|..|+
T Consensus       185 ~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~  254 (285)
T 1wdy_A          185 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  254 (285)
T ss_dssp             HHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT----------SCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred             HHHHHHHccccchHHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCC
Confidence            9999999999    99999999999999999876          9999999999999999999999 8999999999999


Q ss_pred             cHHHHHHHcCcHhHHHHhcC-CCCCCCC
Q 011309          232 LPLDVARMWGRHWLEPLLAP-SSDAVMP  258 (489)
Q Consensus       232 TpL~~A~~~g~~~i~~LL~~-~~~~~~~  258 (489)
                      ||||+|+..|+.+++++|.+ +++++..
T Consensus       255 t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~  282 (285)
T 1wdy_A          255 TALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             cHHHHHHHcCcHHHHHHHHHcCCCCCcc
Confidence            99999999999999888765 5555443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=2.8e-34  Score=288.48  Aligned_cols=237  Identities=26%  Similarity=0.179  Sum_probs=183.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|++++|++|+++|++++..+..+  +||||+|+..|+.++|++|+++|++++..|.          .|.
T Consensus        58 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~----------~g~  125 (351)
T 3utm_A           58 KSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGG--LVPLHNACSYGHYEVTELLLKHGACVNAMDL----------WQF  125 (351)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CcHHHHHHHCCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence            3578999999999999999999999988776655  8999999999999999999999999999887          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCc---cccccccccccCCchhhhhhhhh------------------hhhhhhhc
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPF---EVMNTQIEGDRGDGSSVKSKCDQ------------------SALSKFVN  148 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~------------------~~~~~~in  148 (489)
                      ||||+|+..|+.+++++|++.+......   +.+.++.+...............                  ........
T Consensus       126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  205 (351)
T 3utm_A          126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINF  205 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccc
Confidence            9999999999999999999877654332   22222222211111111000000                  00001123


Q ss_pred             cccCCCccHHHHHHHc---CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 011309          149 KAADGGITALHMAALN---GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  225 (489)
Q Consensus       149 ~~d~~G~TpLh~Aa~~---g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~  225 (489)
                      ..+..|.||||+|+..   +..+++++|+++|++++..+..          |.||||+|+..|+.++|++|+++|++++.
T Consensus       206 ~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~  275 (351)
T 3utm_A          206 KQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKD----------FMTPLHVAAERAHNDVMEVLHKHGAKMNA  275 (351)
T ss_dssp             CCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            4567899999999999   5589999999999999999876          99999999999999999999999999999


Q ss_pred             cCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHH
Q 011309          226 LNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       226 ~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~  272 (489)
                      +|..|+||||+|+..|+.+++++|.+ +++++..    +..+.+|+..
T Consensus       276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~----~~~g~tal~~  319 (351)
T 3utm_A          276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII----SLQGFTAAQM  319 (351)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCHHHH
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCc----CCCCCChhhh
Confidence            99999999999999999999887765 4555554    3445555543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.9e-34  Score=264.30  Aligned_cols=161  Identities=37%  Similarity=0.539  Sum_probs=147.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      -+++|+.||+.|++++|++||+.|++++..+..+  +||||+|+..|+.+++++|+++|++++.+|.          .|+
T Consensus         4 lg~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g--~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~----------~g~   71 (169)
T 4gpm_A            4 LGKRLIEAAENGNKDRVKDLIENGADVNASDSDG--RTPLHHAAENGHKEVVKLLISKGADVNAKDS----------DGR   71 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHhcccchhhhcc----------CCC
Confidence            4689999999999999999999999999877666  9999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.++|++|++.+.+                                 +|.+|..|.||||+|+..|+.++
T Consensus        72 TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------vn~~d~~G~TpLh~A~~~g~~~~  118 (169)
T 4gpm_A           72 TPLHHAAENGHKEVVKLLISKGAD---------------------------------VNAKDSDGRTPLHHAAENGHKEV  118 (169)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCcCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999987654                                 78899999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMS  225 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~  225 (489)
                      |++|+++|++++..|..          |+||||+|+..|+.++|++|+++||+++.
T Consensus       119 v~~Ll~~gad~~~~d~~----------G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          119 VKLLISKGADVNTSDSD----------GRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             HHHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999977          99999999999999999999999999864

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.5e-34  Score=283.35  Aligned_cols=201  Identities=25%  Similarity=0.262  Sum_probs=172.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.|++++..+..+  +||||+|+..|+.++|++|+++|++++.+|.          .|+
T Consensus        59 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~g~  126 (285)
T 3d9h_A           59 DWSPMHEAAIHGHQLSLRNLISQGWAVNIITADH--VSPLHEACLGGHLSCVKILLKHGAQVNGVTA----------DWH  126 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTC--CCHHHHHHHTTCHHHHHHHHHTTCCSSCCCT----------TCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHCCcHHHHHHHHHCCCCCCCCCC----------CCC
Confidence            3579999999999999999999999998877665  9999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++. +..|.||||+|+..|+.++
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~-~~~g~t~L~~A~~~g~~~~  172 (285)
T 3d9h_A          127 TPLFNACVSGSWDCVNLLLQHGAS---------------------------------VQP-ESDLASPIHEAARRGHVEC  172 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SSC-SCTTSCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHcCHHHHHHHHHHCCCC---------------------------------CCC-CCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999987543                                 222 2348899999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  249 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL  249 (489)
                      +++|+++|++++..+..          |.||||+|+..|+.++|++|+++|++++. |..|+||||+|+..|+.+++++|
T Consensus       173 v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          173 VNSLIAYGGNIDHKISH----------LGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             HHHHHHTTCCTTCCBTT----------TBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999888876          88999999999999999999999999984 88899999999999999988777


Q ss_pred             cCC-CCCCCCCCCCCCCcchhhH
Q 011309          250 APS-SDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       250 ~~~-~~~~~~~~~~~~~~~~pl~  271 (489)
                      .+. ++.+..    +..+.+|++
T Consensus       242 l~~gad~~~~----d~~g~t~l~  260 (285)
T 3d9h_A          242 MDFGADTQAK----NAEGKRPVE  260 (285)
T ss_dssp             HHTTCCTTCC----CTTSCCGGG
T ss_pred             HHCCCCCCCc----CCCCCCHHH
Confidence            654 444433    334445543

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.7e-35  Score=286.05  Aligned_cols=204  Identities=25%  Similarity=0.294  Sum_probs=134.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcc------cCCCCCCchHHHHHHHhCcH-HHHHHHHHcCCCCCCcCCCCCcccc
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAK------YSTFGGLNSPLHFAAAKGHN-EIVALLLENGADVNSRNYCGQVTRA   83 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~------~~~~~~g~TpLh~Aa~~G~~-eivk~LLe~Gad~n~~d~~g~i~~~   83 (489)
                      .++|+.||+.|++++|++||+.+++...      ...+..+.||||+|+..++. +++++|++.|+++|.+|.       
T Consensus        12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~-------   84 (269)
T 4b93_B           12 VEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQ-------   84 (269)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCT-------
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCC-------
Confidence            4799999999999999999999875321      11223348999999998876 589999999999999998       


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309           84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  163 (489)
Q Consensus        84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~  163 (489)
                         +|+||||+|+..|+.++|++|++.+..                                 ++..+..|.||||+|+.
T Consensus        85 ---~G~TpLh~A~~~g~~~~v~~Ll~~~a~---------------------------------~~~~~~~g~t~l~~a~~  128 (269)
T 4b93_B           85 ---DGSSPLHVAALHGRADLIPLLLKHGAN---------------------------------AGARNADQAVPLHLACQ  128 (269)
T ss_dssp             ---TSCCHHHHHHHTTCTTHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHH
T ss_pred             ---CCCCHHHHHHHcCcHHHHHHHHhcCCC---------------------------------cCccCCCCCCccccccc
Confidence               999999999999999999999987644                                 55666677777777777


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcH
Q 011309          164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  243 (489)
Q Consensus       164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~  243 (489)
                      .++.+++++|+++|++++..|..          |.||||+|+..|+.++|++||++|+|+|.+|..|+||||+|+..|+.
T Consensus       129 ~~~~~~~~~Ll~~g~~~n~~d~~----------g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~  198 (269)
T 4b93_B          129 QGHFQVVKCLLDSNAKPNKKDLS----------GNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV  198 (269)
T ss_dssp             HTCHHHHHHHHHTTCCSCCCCTT----------CCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred             cChHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCH
Confidence            77777777777777777777655          77777777777777777777777777777777777777777777777


Q ss_pred             hHHHHhcC-CCCCCCCCCCCCCCcchhhH
Q 011309          244 WLEPLLAP-SSDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       244 ~i~~LL~~-~~~~~~~~~~~~~~~~~pl~  271 (489)
                      +++++|+. +++++..    +..+.+|++
T Consensus       199 ~~v~~Ll~~Gad~~~~----d~~G~TpL~  223 (269)
T 4b93_B          199 FVVELLLLHGASVQVL----NKRQRTAVD  223 (269)
T ss_dssp             HHHHHHHHTTCCSCCC----CTTSCCSGG
T ss_pred             HHHHHHHHCCCCCCCc----CCCCCCHHH
Confidence            77666644 3444433    334445543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.2e-34  Score=286.34  Aligned_cols=223  Identities=25%  Similarity=0.307  Sum_probs=181.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .+++||.|+..|++++|++||+.|++++..+..+  .||||+|+..|+.++|++|+++|++++..|.          .|+
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~g~  107 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGANINQPDN----------EGW  107 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC--CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence            3689999999999999999999999988877665  8999999999999999999999999999998          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhh----------------------
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALS----------------------  144 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------------------  144 (489)
                      ||||+|+..|+.++|++|++.+....   ..+.++++.+...+....+..+.......                      
T Consensus       108 tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~  187 (299)
T 1s70_B          108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNS  187 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhc
Confidence            99999999999999999999876433   34556666665544433333222111000                      


Q ss_pred             --hhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          145 --KFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       145 --~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                        ......+..|.||||+|+..|+.++|++|+++|++++..|..          |.||||+|+..|+.++|++|+++|+|
T Consensus       188 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~gad  257 (299)
T 1s70_B          188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCD  257 (299)
T ss_dssp             TCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHHHHhcCCHHHHHHHHHcCCC
Confidence              011234567999999999999999999999999999998866          99999999999999999999999999


Q ss_pred             CCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          223 RMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       223 vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      ++.+|..|+||||+|.......+..++.+...
T Consensus       258 ~~~~d~~g~t~l~~A~~~~~~~l~~l~~~~~~  289 (299)
T 1s70_B          258 MEAVNKVGQTAFDVADEDILGYLEELQKKQNL  289 (299)
T ss_dssp             TTCCCTTSCCTTTSCCSGGGHHHHHHHHHTTS
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999987666666666655443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=9.2e-34  Score=284.71  Aligned_cols=209  Identities=27%  Similarity=0.276  Sum_probs=179.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .++||.||+.|+.+.|+.|+.. +.+++..+..+  +||||+|+..|+.++|++|+++|++++..|.          .|+
T Consensus        25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~   92 (351)
T 3utm_A           25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRK--STPLHLAAGYNRVRIVQLLLQHGADVHAKDK----------GGL   92 (351)
T ss_dssp             HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCC
T ss_pred             chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------CCC
Confidence            5789999999999999999986 66666665554  9999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.++
T Consensus        93 t~L~~A~~~g~~~iv~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~  139 (351)
T 3utm_A           93 VPLHNACSYGHYEVTELLLKHGAC---------------------------------VNAMDLWQFTPLHEAASKNRVEV  139 (351)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             cHHHHHHHCCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999987543                                 67788899999999999999999


Q ss_pred             HHHHHhcCCCcccccccC------------------------------------------------CCccccCCCCCcHH
Q 011309          170 VQLLLDLHANVSAVTFHY------------------------------------------------GTSMDLIGAGSTPL  201 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~------------------------------------------------~~~~~~~~~G~TpL  201 (489)
                      +++|+++|++++..+..+                                                ...    ..|.|||
T Consensus       140 v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~t~L  215 (351)
T 3utm_A          140 CSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP----QSHETAL  215 (351)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT----TTCCCHH
T ss_pred             HHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC----CCCCCHH
Confidence            999999999987643110                                                000    1389999


Q ss_pred             HHHHHc---CCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHH
Q 011309          202 HFAACG---GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       202 h~Aa~~---g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~  272 (489)
                      |+|+..   +..+++++|+++|++++.+|.+|+||||+|+..|+.+++++|.+. ++++..    +..+.+|++.
T Consensus       216 ~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~----d~~g~t~L~~  286 (351)
T 3utm_A          216 HCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNAL----DSLGQTALHR  286 (351)
T ss_dssp             HHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCHHHH
T ss_pred             HHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHHH
Confidence            999999   568999999999999999999999999999999999998887654 454444    4556677654

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1.2e-35  Score=284.21  Aligned_cols=199  Identities=24%  Similarity=0.333  Sum_probs=175.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCC----CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNP----CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~----~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      ..||||+|+..|+.++|++|++.+.    +++..+..+  +||||+|+..|+.++|++|+++|++++.+|.         
T Consensus         8 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~---------   76 (236)
T 1ikn_D            8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ--QTPLHLAVITNQPEIAEALLGAGCDPELRDF---------   76 (236)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTC--CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT---------
T ss_pred             CCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC---------
Confidence            3467999999999999999999876    455555544  9999999999999999999999999999998         


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  165 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g  165 (489)
                       .|+||||+|+..|+.+++++|++.+....                           ....++..+..|.||||+|+..|
T Consensus        77 -~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~---------------------------~~~~~~~~~~~g~t~L~~A~~~~  128 (236)
T 1ikn_D           77 -RGNTPLHLACEQGCLASVGVLTQSCTTPH---------------------------LHSILKATNYNGHTCLHLASIHG  128 (236)
T ss_dssp             -TCCCHHHHHHHHTCHHHHHHHHHSTTTTS---------------------------SSCGGGCCCTTCCCHHHHHHHTT
T ss_pred             -CCCCHHHHHHHcCCHHHHHHHHhcccchh---------------------------HHHHhhccCCCCCCHHHHHHHcC
Confidence             99999999999999999999998754311                           11236778889999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccc-cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHh
Q 011309          166 YFDCVQLLLDLHANVSAVTF-HYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW  244 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn~~~~-~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~  244 (489)
                      +.++|++|+++|++++..+. .          |.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       129 ~~~~v~~Ll~~g~~~~~~~~~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  198 (236)
T 1ikn_D          129 YLGIVELLVSLGADVNAQEPCN----------GRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTR  198 (236)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchH
Confidence            99999999999999999886 4          999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCC
Q 011309          245 LEPLLAPSSDAVM  257 (489)
Q Consensus       245 i~~LL~~~~~~~~  257 (489)
                      ++++|.+.+....
T Consensus       199 ~~~~Ll~~ga~~~  211 (236)
T 1ikn_D          199 IQQQLGQLTLENL  211 (236)
T ss_dssp             HHHHHHTTSCGGG
T ss_pred             HHHHHHHcchhhh
Confidence            9999988766544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=100.00  E-value=1.5e-34  Score=296.98  Aligned_cols=220  Identities=22%  Similarity=0.216  Sum_probs=162.8

Q ss_pred             CchHHHHHHHHcCCHHHHHHHh--------hcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCc
Q 011309            9 ASGERLVSAARDGDFVEAKMLL--------DCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQV   80 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL--------~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i   80 (489)
                      ...||||+|+..|+.++|++|+        +.|++++..+..+  +||||+|+..|+.++|++|+++|++++..|.    
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g--~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~----  197 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAGADPTIYNK----  197 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC--CCHHHHHHHcChHHHHHHHHHCCCCCcccCC----
Confidence            3458999999999998888776        7899988877655  8999999999999999999999999999998    


Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHcc------CCCCCccccccccccccCC---chhhhhhhhhhhhhhhhc---
Q 011309           81 TRADYLSGRTALHFAAVNGHVRCIRLVVADF------VPSVPFEVMNTQIEGDRGD---GSSVKSKCDQSALSKFVN---  148 (489)
Q Consensus        81 ~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~------~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~in---  148 (489)
                            .|.||||+|+..|+.+++++|++.+      ...+..+.++++.+...+.   ...+..+...   +..++   
T Consensus       198 ------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~---g~~~~~~~  268 (373)
T 2fo1_E          198 ------SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK---GAKVDYDG  268 (373)
T ss_dssp             ------TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHH---TCCSSCCS
T ss_pred             ------CCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHC---CCCccccc
Confidence                  8999999999999999999999653      2334455566666555442   2222222211   22222   


Q ss_pred             -----cccCCCccHHHHHHHcCCHHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          149 -----KAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       149 -----~~d~~G~TpLh~Aa~~g~~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                           ..|..|.||||+|+..|+.++|++|+++| ++++..+..          |.||||+|+..|+.++|++|+++|++
T Consensus       269 ~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~gad  338 (373)
T 2fo1_E          269 AARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGRIEVVMYLIQQGAS  338 (373)
T ss_dssp             GGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 24556777777777777777777777665 777776655          77777777777777777777777777


Q ss_pred             CCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          223 RMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       223 vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      ++.+|..|+||||+|+..|+.+++++|.+..
T Consensus       339 ~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          339 VEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            7777777777777777777777777776554

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1.6e-33  Score=293.76  Aligned_cols=227  Identities=28%  Similarity=0.290  Sum_probs=133.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.+.+.+..+..+  .||||+|+..|+.+++++|+++|++++..+.          .|.
T Consensus       113 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~  180 (437)
T 1n11_A          113 GHTPLHIAAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVRVAELLLERDAHPNAAGK----------NGL  180 (437)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCS----------SCC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----------CCC
Confidence            3467888888888888888888877766655544  7888888888888888888888888887776          566


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      ||||+|+..|+.+++++|++.+....   ..+.++++.+...+....+..+...   +..++..+..|.||||+|+..|+
T Consensus       181 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~  257 (437)
T 1n11_A          181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY---GGSANAESVQGVTPLHLAAQEGH  257 (437)
T ss_dssp             CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHHHCCC
Confidence            66666666666666666665544322   2334455555554444444333221   12234444445555555555555


Q ss_pred             HHHHHHHHhcCCCcccccccCCCcccc-----------------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDL-----------------------IGAGSTPLHFAACGGNLKCCQVLLSRGASR  223 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~-----------------------~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv  223 (489)
                      .++|++|+++|++++..+..+.+++..                       ...|.||||+|+..|+.++|++|+++|+++
T Consensus       258 ~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~  337 (437)
T 1n11_A          258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADV  337 (437)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCT
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCC
Confidence            555555555555544444331110000                       011666666666666666666666666666


Q ss_pred             CccCCCCCcHHHHHHHcCcHhHHHHhcC
Q 011309          224 MSLNCNGWLPLDVARMWGRHWLEPLLAP  251 (489)
Q Consensus       224 n~~d~~G~TpL~~A~~~g~~~i~~LL~~  251 (489)
                      +.+|..|+||||+|+..|+.+++++|++
T Consensus       338 n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          338 NAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            6666666666666666666665555544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=3.4e-34  Score=273.57  Aligned_cols=189  Identities=27%  Similarity=0.296  Sum_probs=172.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCC----CCCCcCCCCCcccccC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA----DVNSRNYCGQVTRADY   85 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Ga----d~n~~d~~g~i~~~d~   85 (489)
                      ..||||+|+..|+.++|++|++.|++++..+..+  .||||+|+..|+.+++++|+++|+    +++..+.         
T Consensus        46 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~---------  114 (241)
T 1k1a_A           46 RQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG--QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY---------  114 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT---------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc---------
Confidence            4579999999999999999999999988876655  899999999999999999999987    8888887         


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHc
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALN  164 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~  164 (489)
                       .|.||||+|+..|+.+++++|++.+..                                 ++..+ ..|.||||+|+..
T Consensus       115 -~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~~g~t~L~~A~~~  160 (241)
T 1k1a_A          115 -DGLTALHVAVNTECQETVQLLLERGAD---------------------------------IDAVDIKSGRSPLIHAVEN  160 (241)
T ss_dssp             -TSCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTTCCCHHHHHHHT
T ss_pred             -CCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccccCCCcHHHHHHHc
Confidence             899999999999999999999987543                                 56666 7899999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHh
Q 011309          165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW  244 (489)
Q Consensus       165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~  244 (489)
                      |+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus       161 ~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~  230 (241)
T 1k1a_A          161 NSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVID  230 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHH
Confidence            9999999999999999999876          999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCC
Q 011309          245 LEPLLAPSS  253 (489)
Q Consensus       245 i~~LL~~~~  253 (489)
                      ++++|...+
T Consensus       231 i~~~l~~~~  239 (241)
T 1k1a_A          231 ILRGKATRP  239 (241)
T ss_dssp             HHTC-----
T ss_pred             HHhhhccCC
Confidence            999887654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=1.3e-33  Score=258.73  Aligned_cols=155  Identities=39%  Similarity=0.534  Sum_probs=146.5

Q ss_pred             hHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccccc
Q 011309           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG  126 (489)
Q Consensus        47 TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~  126 (489)
                      ++|+.||+.|+.++|++||++|+|+|.+|.          .|+||||+|+..++.+++++|++.+.+             
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~----------~g~t~l~~a~~~~~~~~~~~ll~~gad-------------   62 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDS----------DGRTPLHHAAENGHKEVVKLLISKGAD-------------   62 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------CCCCHHHHHHHcCCHHHHHHHHhcccc-------------
Confidence            689999999999999999999999999998          999999999999999999999987654             


Q ss_pred             ccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHH
Q 011309          127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  206 (489)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~  206 (489)
                                          ++.+|..|.||||+|+..|+.++|++|+++|++++.+|..          |+||||+|+.
T Consensus        63 --------------------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~----------G~TpLh~A~~  112 (169)
T 4gpm_A           63 --------------------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD----------GRTPLHHAAE  112 (169)
T ss_dssp             --------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHH
T ss_pred             --------------------hhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCC----------CCCHHHHHHH
Confidence                                7888999999999999999999999999999999999976          9999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       207 ~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      .|+.++|++|+++|+|++.+|.+|+||||+|+.+|+.+++++|.+.+.
T Consensus       113 ~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA  160 (169)
T 4gpm_A          113 NGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGG  160 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC--
T ss_pred             cCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCC
Confidence            999999999999999999999999999999999999999988877554

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=283.75  Aligned_cols=182  Identities=28%  Similarity=0.341  Sum_probs=150.3

Q ss_pred             hHHHHHHHHcCCHH-HHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFV-EAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~-~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .+||+.|+..++.+ ++++|++.|++++..+.+|  +||||+|+..|+.++|++||+.|++++..+.          .|.
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G--~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~----------~g~  120 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG--SSPLHVAALHGRADLIPLLLKHGANAGARNA----------DQA  120 (269)
T ss_dssp             ----------------------CCCCTTCCCTTS--CCHHHHHHHTTCTTHHHHHHHTTCCTTCCCT----------TCC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC--CCHHHHHHHcCcHHHHHHHHhcCCCcCccCC----------CCC
Confidence            47899999988865 7899999999998877665  9999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..++.+++++|++.+..                                 +|.+|..|.||||+|+..|+.++
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~---------------------------------~n~~d~~g~TpL~~A~~~g~~~~  167 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAK---------------------------------PNKKDLSGNTPLIYACSGGHHEL  167 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SCCCCTTCCCHHHHHHHTTCGGG
T ss_pred             CccccccccChHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999987544                                 78889999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  249 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL  249 (489)
                      |++|+++|++++..+..          |.||||+|+..|+.++|++||++|+|++.+|.+|+||||+|+++++  ++++|
T Consensus       168 v~~Ll~~gadvn~~~~~----------g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~~--i~~lL  235 (269)
T 4b93_B          168 VALLLQHGASINASNNK----------GNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAEQNSK--IMELL  235 (269)
T ss_dssp             HHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred             HHHHHHCCCCCCccccC----------CCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence            99999999999999876          9999999999999999999999999999999999999999988775  45555

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=2.6e-34  Score=278.30  Aligned_cols=212  Identities=22%  Similarity=0.200  Sum_probs=171.4

Q ss_pred             chHHHHHHHHcCCHH----HHHHHhhcCCCCcc----cCCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCC
Q 011309           10 SGERLVSAARDGDFV----EAKMLLDCNPCLAK----YSTFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCG   78 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~----~Vk~LL~~g~~l~~----~~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g   78 (489)
                      ..||||.|++.|+.+    ++++|++.|.+++.    .+..+  +||||+|+..   |+.++|++|+++|++++..+..-
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g--~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~   79 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTG--KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLV   79 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTT--BCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGG
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCC--CCHHHHHHHccccchHHHHHHHHhcCCcccchhhhc
Confidence            358999999999997    66777779999887    55544  9999999999   99999999999999887443100


Q ss_pred             C-cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccH
Q 011309           79 Q-VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA  157 (489)
Q Consensus        79 ~-i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~Tp  157 (489)
                      . .....+..|.||||+|+..|+.+++++|++.+...+.......                    +....+..|..|.||
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------~~~~~~~~~~~g~tp  139 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF--------------------FQKHQGTCFYFGELP  139 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG--------------------GSCCSSSCCCSCSSH
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc--------------------ccccccccccCCCCH
Confidence            0 0000112799999999999999999999998765322211100                    001123334459999


Q ss_pred             HHHHHHcCCHHHHHHHHh---cCCCcccccccCCCccccCCCCCcHHHHHHH--cCCHH-------HHHHHHHcCCCC--
Q 011309          158 LHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAAC--GGNLK-------CCQVLLSRGASR--  223 (489)
Q Consensus       158 Lh~Aa~~g~~e~v~~LL~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~--~g~~e-------ivk~LL~~Gadv--  223 (489)
                      ||+|+..|+.++|++|++   +|++++..|..          |+||||+|+.  .++.+       ++++|+++|+++  
T Consensus       140 L~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~  209 (256)
T 2etb_A          140 LSLAACTKQWDVVTYLLENPHQPASLEATDSL----------GNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCP  209 (256)
T ss_dssp             HHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHcCCHHHHHHHHhccccCCCcCccCCC----------CCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccc
Confidence            999999999999999999   99999999976          9999999999  88888       999999999999  


Q ss_pred             -----CccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          224 -----MSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       224 -----n~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                           +.+|..|+||||+|+..|+.+++++|++++
T Consensus       210 ~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          210 TVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             TCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence                 999999999999999999999999987654

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=100.00  E-value=1e-32  Score=287.67  Aligned_cols=227  Identities=27%  Similarity=0.304  Sum_probs=158.6

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .||||+|+..|++++|++|+++|++++..+..+  .||||+|+..|+.++|++|+++|+++|.++.          .|+|
T Consensus        15 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~--~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t   82 (437)
T 1n11_A           15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAK----------DDQT   82 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCC--CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCT----------TSCC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCC----------CCCC
Confidence            478999999999999999999998887766555  8999999999999999999999999998887          7888


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |||+|+..|+.++|++|++.+...   +..+.++++.+...+....+..+....   ..++..+..|.||||+|+..|+.
T Consensus        83 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~g~t~L~~A~~~g~~  159 (437)
T 1n11_A           83 PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE---ASQACMTKKGFTPLHVAAKYGKV  159 (437)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCSCCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC---CCCcCCCCCCCCHHHHHHHcCCH
Confidence            888888888888888888776543   334566677776666665555444321   22344455555666666666666


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccC-----------------------CCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLI-----------------------GAGSTPLHFAACGGNLKCCQVLLSRGASRM  224 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~-----------------------~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn  224 (489)
                      +++++|+++|++++..+..+.+++...                       ..|.||||+|+..|+.+++++|+++|++++
T Consensus       160 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~  239 (437)
T 1n11_A          160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN  239 (437)
T ss_dssp             HHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            666666666555555554422222100                       136777777777777777777777777777


Q ss_pred             ccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          225 SLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       225 ~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      ..+..|+||||+|+..|+.+++++|...
T Consensus       240 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  267 (437)
T 1n11_A          240 AESVQGVTPLHLAAQEGHAEMVALLLSK  267 (437)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHCCCHHHHHHHHhc
Confidence            7777777777777777777776666543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.6e-33  Score=266.35  Aligned_cols=182  Identities=31%  Similarity=0.474  Sum_probs=170.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcC-CCCCCcCCCCCcccccCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENG-ADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~G-ad~n~~d~~g~i~~~d~~~G   88 (489)
                      ..+|||.|+..|+.++|++|++.|++++..+..+  .||||+|+..|+.+++++|+++| ++++..+.          .|
T Consensus        44 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------~g  111 (237)
T 3b7b_A           44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEG--STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD----------GG  111 (237)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTS--CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT----------TS
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC--CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC----------CC
Confidence            3579999999999999999999999988776655  89999999999999999999998 89999987          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|++.+..                                 ++.++..|.||||+|+..|+.+
T Consensus       112 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  158 (237)
T 3b7b_A          112 WTPMIWATEYKHVDLVKLLLSKGSD---------------------------------INIRDNEENICLHWAAFSGCVD  158 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHCCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCccCCCCCCHHHHHHHCCCHH
Confidence            9999999999999999999987543                                 6778889999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      ++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..++.+.+
T Consensus       159 ~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~  226 (237)
T 3b7b_A          159 IAEILLAAKCDLHAVNIH----------GDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSA  226 (237)
T ss_dssp             HHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999876          99999999999999999999999999999999999999999999998543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=5.9e-34  Score=281.86  Aligned_cols=191  Identities=19%  Similarity=0.140  Sum_probs=172.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.|++++..+    |+||||+|+..|+.++|++|+++|++++..|.          .|+
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~----g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~----------~g~   96 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE----NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD----------KGN   96 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT----TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC----CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC----------CCC
Confidence            4579999999999999999999999887762    48999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCC-ccHHHHHHHcCCHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGG-ITALHMAALNGYFD  168 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G-~TpLh~Aa~~g~~e  168 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++..+..| .||||+|+..|+.+
T Consensus        97 t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~g~~t~L~~A~~~~~~~  143 (285)
T 3kea_A           97 TALYYAVDSGNMQTVKLFVKKNWR---------------------------------LMFYGKTGWKTSFYHAVMLNDVS  143 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHCGG---------------------------------GGGCSSSGGGSHHHHHHHTTCHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCCC---------------------------------CCccCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999976432                                 77888889 89999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH-HHHHHHcCcHhHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP-LDVARMWGRHWLEP  247 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp-L~~A~~~g~~~i~~  247 (489)
                      ++++|+++|+++.... .          |.||||+|+..|+.++|++|+++|++++.+|..|+|| ||+|+..|+.++++
T Consensus       144 ~v~~Ll~~g~~~~~~~-~----------g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~  212 (285)
T 3kea_A          144 IVSYFLSEIPSTFDLA-I----------LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQ  212 (285)
T ss_dssp             HHHHHHTTSCTTCCCS-T----------HHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCCCcccccc-C----------CccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHH
Confidence            9999999998874432 2          8999999999999999999999999999999999998 99999999999998


Q ss_pred             HhcCC-CCCCCC
Q 011309          248 LLAPS-SDAVMP  258 (489)
Q Consensus       248 LL~~~-~~~~~~  258 (489)
                      +|.+. ++++..
T Consensus       213 ~Ll~~gad~~~~  224 (285)
T 3kea_A          213 ALFKYDINIYSA  224 (285)
T ss_dssp             HHTTSCBCSTTT
T ss_pred             HHHHcCCCCCCC
Confidence            88765 444443

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=5.5e-33  Score=263.25  Aligned_cols=186  Identities=22%  Similarity=0.176  Sum_probs=166.9

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccC-CCCCCchHHHHHHHhCcHHHHHHHHHcC--CCCCCcCCCCCcccccCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYS-TFGGLNSPLHFAAAKGHNEIVALLLENG--ADVNSRNYCGQVTRADYL   86 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~-~~~~g~TpLh~Aa~~G~~eivk~LLe~G--ad~n~~d~~g~i~~~d~~   86 (489)
                      ..||||+|+..|+.++|++|++.|++.+... .+..|+||||+|+..|+.+++++|+++|  ++++..+.          
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~----------  105 (228)
T 2dzn_A           36 GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN----------  105 (228)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCT----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCc----------
Confidence            4579999999999999999999995554433 3344599999999999999999999999  88998887          


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.+++++|++.+.+                                 ++.+|..|.||||+|+..|+
T Consensus       106 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~  152 (228)
T 2dzn_A          106 QGVTCLHLAVGKKWFEVSQFLIENGAS---------------------------------VRIKDKFNQIPLHRAASVGS  152 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHcCCHhHHHHHHHcCCC---------------------------------ccccCCCCCCHHHHHHHcCC
Confidence            899999999999999999999987544                                 77888999999999999999


Q ss_pred             HHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCcHh
Q 011309          167 FDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-SRGASRMSLNCNGWLPLDVARMWGRHW  244 (489)
Q Consensus       167 ~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL-~~Gadvn~~d~~G~TpL~~A~~~g~~~  244 (489)
                      .+++++|+++| ++++..+..          |+||||+|+..|+.+++++|+ ++|+|++.+|.+|+|||++|+..   +
T Consensus       153 ~~~v~~Ll~~g~~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~  219 (228)
T 2dzn_A          153 LKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---Q  219 (228)
T ss_dssp             HHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---T
T ss_pred             HHHHHHHHhcCcccccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---H
Confidence            99999999999 999998876          999999999999999999999 89999999999999999999754   4


Q ss_pred             HHHHhcC
Q 011309          245 LEPLLAP  251 (489)
Q Consensus       245 i~~LL~~  251 (489)
                      ++++|.+
T Consensus       220 ~~~~l~~  226 (228)
T 2dzn_A          220 VKKFFLN  226 (228)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            5555544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=100.00  E-value=6.6e-33  Score=263.46  Aligned_cols=222  Identities=23%  Similarity=0.242  Sum_probs=175.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      +.++|+.|++.|++++|++|++.|.+++..+..+  .||||+|+..|+.++|++|+++|++++..+.         ..|.
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~---------~~~~   77 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQPDKEN--VTLLHWAAINNRIDLVKYYISKGAIVDQLGG---------DLNS   77 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCBT---------TTTB
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCC--CCHHHHHHHhCCHHHHHHHHHcCCcchhhcC---------CcCC
Confidence            4567999999999999999999999988776655  8999999999999999999999999886664         2599


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      ||||+|+..|+.+++++|++.+....   ..+.++++.+...+....+..+...   +..++..+..|.||||+|+..++
T Consensus        78 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK---GQDVDMMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHHCC
T ss_pred             ChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc---CCCccccCCCCCcHHHHHHHhCC
Confidence            99999999999999999998765433   3445666666666665555544332   33466777778888888886655


Q ss_pred             -HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309          167 -FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       167 -~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                       .+++++|++.|++++..+..         .|.||||+|+..|+.+++++|+++|++++.+|..|+|||++|+..|+.++
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  225 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKY---------HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWM  225 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTT---------TCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHhcCCCcchhhcc---------CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence             67788888888887777652         27788888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCCC
Q 011309          246 EPLLAPSSD  254 (489)
Q Consensus       246 ~~LL~~~~~  254 (489)
                      +++|.+...
T Consensus       226 v~~L~~~~~  234 (240)
T 3eu9_A          226 INHLQEARQ  234 (240)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHhhh
Confidence            877765443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=275.86  Aligned_cols=189  Identities=25%  Similarity=0.287  Sum_probs=169.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.|++++..+..+  .||||+|+..|+.++|++|+++|++++..+           .|.
T Consensus        92 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-----------~g~  158 (285)
T 3d9h_A           92 HVSPLHEACLGGHLSCVKILLKHGAQVNGVTADW--HTPLFNACVSGSWDCVNLLLQHGASVQPES-----------DLA  158 (285)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-----------TTS
T ss_pred             CCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-----------CCC
Confidence            4589999999999999999999999998877666  899999999999999999999999998755           699


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.++
T Consensus       159 t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~~~~~  205 (285)
T 3d9h_A          159 SPIHEAARRGHVECVNSLIAYGGN---------------------------------IDHKISHLGTPLYLACENQQRAC  205 (285)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCBTTTBCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCCHHHHHHHcCcHHH
Confidence            999999999999999999987543                                 77889999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  249 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL  249 (489)
                      |++|+++|++++. +..          |.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+  ++.+++++|
T Consensus       206 v~~Ll~~ga~~~~-~~~----------g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~--~~~~~~~~L  272 (285)
T 3d9h_A          206 VKKLLESGADVNQ-GKG----------QDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVP--PESPLAQLF  272 (285)
T ss_dssp             HHHHHHTTCCTTC-CBT----------TBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC--TTSHHHHHH
T ss_pred             HHHHHHCCCCCCC-CCC----------CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhc--CccHHHHHH
Confidence            9999999999995 544          999999999999999999999999999999999999999999  456788877


Q ss_pred             cCCCCCCC
Q 011309          250 APSSDAVM  257 (489)
Q Consensus       250 ~~~~~~~~  257 (489)
                      ++.....+
T Consensus       273 l~~~~a~l  280 (285)
T 3d9h_A          273 LEREGASL  280 (285)
T ss_dssp             HHHC----
T ss_pred             HHhhccCC
Confidence            76644433

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=100.00  E-value=2.1e-32  Score=275.75  Aligned_cols=233  Identities=22%  Similarity=0.091  Sum_probs=180.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccC-------------------------------CCCCCchHHHHHHHhCcH
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYS-------------------------------TFGGLNSPLHFAAAKGHN   58 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~-------------------------------~~~~g~TpLh~Aa~~G~~   58 (489)
                      ..||||+|++.|+.++|++||++|++++..+                               .+..|.||||+|+..|+.
T Consensus        59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~  138 (337)
T 4g8k_A           59 GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV  138 (337)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCH
T ss_pred             CcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcH
Confidence            3589999999999999999999998765432                               223458999999999999


Q ss_pred             HHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHc-cCCCC---CccccccccccccCCchhh
Q 011309           59 EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSV---PFEVMNTQIEGDRGDGSSV  134 (489)
Q Consensus        59 eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~-~~~~~---~~~~~~l~~~~~~~~~~~~  134 (489)
                      +++++|+++|++++..+............|.||||+|+..|+.++|++||+. +.+.+   ..+.+.++...........
T Consensus       139 ~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~  218 (337)
T 4g8k_A          139 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDV  218 (337)
T ss_dssp             HHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTH
T ss_pred             HHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccH
Confidence            9999999999999987765444444556899999999999999999999964 44332   2334444433322222111


Q ss_pred             h-hhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHH
Q 011309          135 K-SKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC  212 (489)
Q Consensus       135 ~-~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei  212 (489)
                      . ........+..+|.+|..|.||||+|+..|+.++|++|++. |++++.+|..          |+||||+|+..|+.++
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~----------G~TpL~~A~~~g~~~i  288 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD----------GKTALLLAVELKLKKI  288 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTT----------SCBHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCC----------CCCHHHHHHHcCCHHH
Confidence            1 11112233456889999999999999999999999999985 8999999977          9999999999999999


Q ss_pred             HHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCC
Q 011309          213 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVM  257 (489)
Q Consensus       213 vk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~  257 (489)
                      |++||++|||+|.+     +|||+|+..|+.+++++|++ ++++++
T Consensus       289 v~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          289 AELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             HHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             HHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            99999999998765     59999999999999887765 455554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=5.7e-33  Score=271.04  Aligned_cols=188  Identities=22%  Similarity=0.196  Sum_probs=149.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC----------
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ----------   79 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~----------   79 (489)
                      ..||||+|+..|+.++|++|+++|++++..+..+  +||||+|+..|+.+++++|+++|++.+.......          
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g--~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  122 (282)
T 1oy3_D           45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGG--HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD  122 (282)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS--CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcc
Confidence            4589999999999999999999999998877655  9999999999999999999999876322110000          


Q ss_pred             ---------------------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCch
Q 011309           80 ---------------------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS  132 (489)
Q Consensus        80 ---------------------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~  132 (489)
                                                 .....+..|.||||+|+..|+.++|++|++.+..                   
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-------------------  183 (282)
T 1oy3_D          123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-------------------  183 (282)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-------------------
T ss_pred             hhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence                                       0111233899999999999999999999987654                   


Q ss_pred             hhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHH
Q 011309          133 SVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLK  211 (489)
Q Consensus       133 ~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~e  211 (489)
                                    ++..+. .|.||||+|+..|+.++|++|+++|++++.++..          |.||||+|+..|+.+
T Consensus       184 --------------~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~A~~~~~~~  239 (282)
T 1oy3_D          184 --------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG----------GRTPLGSALLRPNPI  239 (282)
T ss_dssp             --------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHTSSCHH
T ss_pred             --------------CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccC----------CCCHHHHHHHcCCcH
Confidence                          666664 4999999999999999999999999999999976          999999999999999


Q ss_pred             HHHHHHHcCCCCCccCCCCCcHHHHHHHcCc
Q 011309          212 CCQVLLSRGASRMSLNCNGWLPLDVARMWGR  242 (489)
Q Consensus       212 ivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~  242 (489)
                      ++++|+++|++++.+|.+|+|||++|.....
T Consensus       240 ~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          240 LARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999999987653

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1e-32  Score=260.84  Aligned_cols=194  Identities=24%  Similarity=0.237  Sum_probs=169.2

Q ss_pred             CCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCC
Q 011309           21 GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGH  100 (489)
Q Consensus        21 G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~  100 (489)
                      |++++|++|++.|++++...+. .|+||||+|+..|+.++|++|+++|++++..|.          .|+||||+|+..|+
T Consensus         2 g~~~~i~~Ll~~g~~~~~~~d~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~   70 (223)
T 2f8y_A            2 DAPAVISDFIYQGASLHNQTDR-TGETALHLAARYSRSDAAKRLLEASADANIQDN----------MGRTPLHAAVSADA   70 (223)
T ss_dssp             ---CCEETTEETTCCTTCCCTT-TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTC
T ss_pred             CcHHHHHHHHHcCCCcccccCC-CCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCCCHHHHHHHcCC
Confidence            7888999999999998765332 249999999999999999999999999999998          99999999999999


Q ss_pred             HHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCc
Q 011309          101 VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV  180 (489)
Q Consensus       101 ~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadv  180 (489)
                      .+++++|++.+..                                .++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus        71 ~~~v~~Ll~~~~~--------------------------------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~  118 (223)
T 2f8y_A           71 QGVFQILIRNRAT--------------------------------DLDARMHDGTTPLILAARLAVEGMLEDLINSHADV  118 (223)
T ss_dssp             HHHHHHHHHBTTS--------------------------------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHHHHcCCC--------------------------------CcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC
Confidence            9999999976431                                26777889999999999999999999999999999


Q ss_pred             ccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCC
Q 011309          181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPR  259 (489)
Q Consensus       181 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~  259 (489)
                      +..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+. ++.+.. 
T Consensus       119 ~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~-  187 (223)
T 2f8y_A          119 NAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDIT-  187 (223)
T ss_dssp             TCBCTT----------SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCC-
T ss_pred             cCcCCC----------CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccc-
Confidence            999876          99999999999999999999999999999999999999999999999998877665 444443 


Q ss_pred             CCCCCCcchhhH
Q 011309          260 FHPSNYLSLPLL  271 (489)
Q Consensus       260 ~~~~~~~~~pl~  271 (489)
                         +..+.+|+.
T Consensus       188 ---~~~g~t~l~  196 (223)
T 2f8y_A          188 ---DHMDRLPRD  196 (223)
T ss_dssp             ---CTTCCCHHH
T ss_pred             ---cccCCCHHH
Confidence               445566643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=1.5e-33  Score=275.90  Aligned_cols=208  Identities=22%  Similarity=0.176  Sum_probs=169.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhh----cCCCCccc--CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCC------
Q 011309            9 ASGERLVSAARDGDFVEAKMLLD----CNPCLAKY--STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNS------   73 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~--~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~------   73 (489)
                      ...++||.|++.|++++|+.|++    .+.+++..  ..+..|+||||+|+..   |+.++|++||++|++++.      
T Consensus        12 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~   91 (273)
T 2pnn_A           12 YDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVN   91 (273)
T ss_dssp             CCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhh
Confidence            34689999999999999999987    45554421  1233459999999987   999999999999876432      


Q ss_pred             -----cCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhc
Q 011309           74 -----RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN  148 (489)
Q Consensus        74 -----~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in  148 (489)
                           .|.          .|+||||+|+..|+.++|++|++.+...+........                   .....+
T Consensus        92 ~~~~~~d~----------~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~  142 (273)
T 2pnn_A           92 ASYTDSYY----------KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-------------------KKTKGR  142 (273)
T ss_dssp             CCCCSTTT----------TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------SSCSSS
T ss_pred             cccccccC----------CCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------cccccc
Confidence                 333          8999999999999999999999987653322211100                   000134


Q ss_pred             cccCCCccHHHHHHHcCCHHHHHHHHh---cCCCcccccccCCCccccCCCCCcHHHHHHHcCC---------HHHHHHH
Q 011309          149 KAADGGITALHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVL  216 (489)
Q Consensus       149 ~~d~~G~TpLh~Aa~~g~~e~v~~LL~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~L  216 (489)
                      ..+..|.||||+|+..|+.++|++|++   +|++++..+..          |+||||+|+..|+         .+++++|
T Consensus       143 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~----------g~tpLh~A~~~~~~~~~~~~~~~~~v~~L  212 (273)
T 2pnn_A          143 PGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSV----------GNTVLHALVEVADNTVDNTKFVTSMYNEI  212 (273)
T ss_dssp             CCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSCHHHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCC----------CCcHHHHHHHccCcchhHHHHHHHHHHHH
Confidence            445689999999999999999999999   99999999976          9999999999998         8999999


Q ss_pred             HHcCCCCC-------ccCCCCCcHHHHHHHcCcHhHHHHhcCCCCC
Q 011309          217 LSRGASRM-------SLNCNGWLPLDVARMWGRHWLEPLLAPSSDA  255 (489)
Q Consensus       217 L~~Gadvn-------~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~  255 (489)
                      +++|++++       .+|..|+||||+|+..|+.+++++|++.+..
T Consensus       213 l~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          213 LILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH  258 (273)
T ss_dssp             HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence            99999997       4899999999999999999999888776654

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=2.1e-33  Score=272.27  Aligned_cols=207  Identities=21%  Similarity=0.124  Sum_probs=167.7

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhh----cCCCCcccCCC--CCCchHHHHHH---HhCcHHHHHHHHHcCCCC--------
Q 011309            9 ASGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTF--GGLNSPLHFAA---AKGHNEIVALLLENGADV--------   71 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~~~~--~~g~TpLh~Aa---~~G~~eivk~LLe~Gad~--------   71 (489)
                      ...++||.|++.|+.+.|+.|++    .+.+++.....  ..|.||||+|+   ..|+.++|++|++.|+++        
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   83 (260)
T 3jxi_A            4 FNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFIN   83 (260)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHT
T ss_pred             chHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhc
Confidence            34689999999999996555555    89888766532  34599999999   779999999999988653        


Q ss_pred             ---CCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhc
Q 011309           72 ---NSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVN  148 (489)
Q Consensus        72 ---n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in  148 (489)
                         +..|.          .|+||||+|+..|+.++|++|++.+...+........                   .....+
T Consensus        84 ~~~~~~d~----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~-------------------~~~~~~  134 (260)
T 3jxi_A           84 SPFRDVYY----------RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF-------------------QPKDEG  134 (260)
T ss_dssp             CCBCCSSE----------ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC-------------------SSSCCC
T ss_pred             cccccccc----------CCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc-------------------Cccccc
Confidence               33333          7999999999999999999999987653222110000                   000122


Q ss_pred             cccCCCccHHHHHHHcCCHHHHHHHHh---cCCCcccccccCCCccccCCCCCcHHHHHHHcCC---------HHHHHHH
Q 011309          149 KAADGGITALHMAALNGYFDCVQLLLD---LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN---------LKCCQVL  216 (489)
Q Consensus       149 ~~d~~G~TpLh~Aa~~g~~e~v~~LL~---~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~---------~eivk~L  216 (489)
                      ..+..|.||||+|+..|+.++|++|++   +|++++..|..          |+||||+|+..++         .+++++|
T Consensus       135 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~----------g~TpLh~A~~~~~~~~~~~~~~~~~v~~L  204 (260)
T 3jxi_A          135 GYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR----------GNTVLHALVAIADNTRENTKFVTKMYDLL  204 (260)
T ss_dssp             CSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTT----------SCCHHHHHHHHCCSSHHHHHHHHHHHHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCC----------CCcHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            233689999999999999999999999   99999999976          9999999999887         7999999


Q ss_pred             HHcCCCC-------CccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          217 LSRGASR-------MSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       217 L~~Gadv-------n~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      +++|+++       +.+|.+|+||||+|+..|+.+++++|++++.
T Consensus       205 l~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~  249 (260)
T 3jxi_A          205 LIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREI  249 (260)
T ss_dssp             HHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999998       6799999999999999999999988876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.98  E-value=7.3e-33  Score=284.36  Aligned_cols=250  Identities=18%  Similarity=0.128  Sum_probs=201.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHH--------HcCCCCCCcCCCCCcc
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLL--------ENGADVNSRNYCGQVT   81 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LL--------e~Gad~n~~d~~g~i~   81 (489)
                      ..|+||.|+..|+ +++++|+..  +++..+. ..|+||||+|+..|+.++|++|+        ++|+++|.+|.     
T Consensus        94 g~t~L~~Aa~~~~-~~~~~L~~~--~~n~~d~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~-----  164 (373)
T 2fo1_E           94 SPIKLHTEAAGSY-AITEPITRE--SVNIIDP-RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC-----  164 (373)
T ss_dssp             CCCHHHHHHHSSS-CCCSCCSTT--TTTTCCC-SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT-----
T ss_pred             CccHHHHHhcCCc-hHHHHhccc--cccccCC-cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCC-----
Confidence            3578999999554 788888764  4444442 23489999999999998888776        88999999998     


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHH
Q 011309           82 RADYLSGRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL  158 (489)
Q Consensus        82 ~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpL  158 (489)
                           .|.||||+|+..|+.++|++|++.+...   +..+.++++.+...+....+..+.........++..|..|.|||
T Consensus       165 -----~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L  239 (373)
T 2fo1_E          165 -----DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL  239 (373)
T ss_dssp             -----TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred             -----CCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence                 9999999999999999999999987644   34567888899888888888877776655567899999999999


Q ss_pred             HHHHHcC---CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcHH
Q 011309          159 HMAALNG---YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG-ASRMSLNCNGWLPL  234 (489)
Q Consensus       159 h~Aa~~g---~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL  234 (489)
                      |+|+..+   +.+++++|+++|++++..+.....  .....|.||||+|+..|+.++|++|+++| ++++.+|.+|+|||
T Consensus       240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~--~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL  317 (373)
T 2fo1_E          240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD--SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPI  317 (373)
T ss_dssp             HHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS--SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHH
T ss_pred             HHHHHhCCcchHHHHHHHHHCCCCcccccccccC--cccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHH
Confidence            9999998   899999999999999873210000  00124999999999999999999999876 99999999999999


Q ss_pred             HHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHHHHHHHHcCCc
Q 011309          235 DVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLNVARECGLL  283 (489)
Q Consensus       235 ~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~  283 (489)
                      |+|+..|+.+++++|++. ++++..    +..+.+|+    .+|...|+.
T Consensus       318 ~~A~~~g~~~iv~~Ll~~gad~~~~----d~~g~t~l----~~A~~~g~~  359 (373)
T 2fo1_E          318 MLAAQEGRIEVVMYLIQQGASVEAV----DATDHTAR----QLAQANNHH  359 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSCC----CSSSCCHH----HHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccCC----CCCCCCHH----HHHHHcCCH
Confidence            999999999998887664 444443    45566774    455555554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.98  E-value=8.6e-33  Score=272.36  Aligned_cols=188  Identities=21%  Similarity=0.222  Sum_probs=170.7

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCC--CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCC-CCCCcCCCCCcccccCCCC
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPC--LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~--l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Ga-d~n~~d~~g~i~~~d~~~G   88 (489)
                      +++|.|+..|+++.++.|++.+.+  ++..+.  .|+||||+|+..|+.++|++||++|+ +++..|.          .|
T Consensus        78 ~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~--~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~----------~g  145 (276)
T 4hbd_A           78 SDAHPELVRRHLVTFRAMSARLLDYVVNIADS--NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR----------AG  145 (276)
T ss_dssp             TTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCT--TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT----------TS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCC--CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC----------CC
Confidence            457899999999999999988766  444444  45999999999999999999999998 9999998          99


Q ss_pred             ChHHHHHH-----HcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309           89 RTALHFAA-----VNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  163 (489)
Q Consensus        89 ~TpLh~Aa-----~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~  163 (489)
                      .||||+|+     ..++.+++++|++.+..                                 .+..+..|.||||+|+.
T Consensus       146 ~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~tpLh~A~~  192 (276)
T 4hbd_A          146 YSPIMLTALATLKTQDDIETVLQLFRLGNI---------------------------------NAKASQAGQTALMLAVS  192 (276)
T ss_dssp             CCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---------------------------------TCCCTTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---------------------------------ccccCCCCCCHHHHHHH
Confidence            99999999     67899999999976532                                 56678889999999999


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCc
Q 011309          164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGR  242 (489)
Q Consensus       164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~g~  242 (489)
                      .|+.++|++|+++|++++..|..          |+||||+|+..|+.++|++|++ .|+|++.+|.+|+||||+|+..|+
T Consensus       193 ~g~~~~v~~Ll~~gad~n~~d~~----------G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~  262 (276)
T 4hbd_A          193 HGRVDVVKALLACEADVNVQDDD----------GSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQ  262 (276)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHHhCCCCCCCCCCC----------CCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCC
Confidence            99999999999999999999976          9999999999999999999999 899999999999999999999999


Q ss_pred             HhHHHHhcCCCC
Q 011309          243 HWLEPLLAPSSD  254 (489)
Q Consensus       243 ~~i~~LL~~~~~  254 (489)
                      .+++++|.+..+
T Consensus       263 ~~iv~~Ll~~~~  274 (276)
T 4hbd_A          263 SEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHhccC
Confidence            999999977654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.98  E-value=3.2e-31  Score=261.65  Aligned_cols=201  Identities=28%  Similarity=0.377  Sum_probs=170.6

Q ss_pred             HHHHHcCCHHHHHHHhhcCCCCcccCC-------CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309           15 VSAARDGDFVEAKMLLDCNPCLAKYST-------FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus        15 ~~Aa~~G~~~~Vk~LL~~g~~l~~~~~-------~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      +.+++.|..+.++.++.....+.....       ...+.||||+|+..|+.++|++||++|+++|..|.          .
T Consensus         3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~   72 (299)
T 1s70_B            3 MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV----------D   72 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT----------T
T ss_pred             hhHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------C
Confidence            357888899999999987665433211       12347999999999999999999999999999998          8


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |.||||+|+..|+.++|++|++.+..                                 ++..|..|.||||+|+..|+.
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~g~tpL~~A~~~g~~  119 (299)
T 1s70_B           73 GLTALHQACIDDNVDMVKFLVENGAN---------------------------------INQPDNEGWIPLHAAASCGYL  119 (299)
T ss_dssp             CCBHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHTCH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCcHHHHHHHcCCH
Confidence            99999999999999999999987654                                 677788889999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccC--------------------------------------------------CCC
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLI--------------------------------------------------GAG  197 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~--------------------------------------------------~~G  197 (489)
                      ++|++|+++|++++..+..+.+++...                                                  ..|
T Consensus       120 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g  199 (299)
T 1s70_B          120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG  199 (299)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred             HHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCC
Confidence            999999999998888877666665321                                                  358


Q ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCC
Q 011309          198 STPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMP  258 (489)
Q Consensus       198 ~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~  258 (489)
                      .||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++. ++++..
T Consensus       200 ~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~  261 (299)
T 1s70_B          200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (299)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCc
Confidence            9999999999999999999999999999999999999999999999998777654 454444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=1.2e-31  Score=273.05  Aligned_cols=207  Identities=22%  Similarity=0.156  Sum_probs=178.8

Q ss_pred             CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC-cccc
Q 011309           42 FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP-FEVM  120 (489)
Q Consensus        42 ~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~-~~~~  120 (489)
                      +..|+||||+|+..|+.++|++||++|++++..|.          .|.||||+|+..|+.++|++|++.+..... .+.+
T Consensus        17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~----------~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t   86 (364)
T 3ljn_A           17 DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR----------FGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQK   86 (364)
T ss_dssp             CHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCC----------CCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Confidence            33459999999999999999999999999999998          999999999999999999999998876555 7788


Q ss_pred             ccccccccCCchhhhhhhhhhhh-hhhh-----------------ccccCCCccHHHHHHHcC--CHHHHHHHHhcCCCc
Q 011309          121 NTQIEGDRGDGSSVKSKCDQSAL-SKFV-----------------NKAADGGITALHMAALNG--YFDCVQLLLDLHANV  180 (489)
Q Consensus       121 ~l~~~~~~~~~~~~~~~~~~~~~-~~~i-----------------n~~d~~G~TpLh~Aa~~g--~~e~v~~LL~~Gadv  180 (489)
                      +++.+...+....+..+...... ...+                 +..|..|.||||+|+..|  +.++|++|+++|+++
T Consensus        87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~  166 (364)
T 3ljn_A           87 PIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP  166 (364)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT
T ss_pred             HHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC
Confidence            99999988888887777655211 1222                 338889999999999999  999999999999999


Q ss_pred             ccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CC
Q 011309          181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SD  254 (489)
Q Consensus       181 n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad-----vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~  254 (489)
                      +..+..          |.||||+|+..|+.++|++|+++|++     ++.+|..|+||||+|+..|+.+++++|++. ++
T Consensus       167 ~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad  236 (364)
T 3ljn_A          167 TAKDKA----------DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID  236 (364)
T ss_dssp             TCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC
T ss_pred             cccCCC----------CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999876          99999999999999999999999999     999999999999999999999998888764 44


Q ss_pred             CCCCCCCCCCCcchhhHH
Q 011309          255 AVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       255 ~~~~~~~~~~~~~~pl~~  272 (489)
                      ++..    +..+.+|++.
T Consensus       237 ~~~~----d~~g~tpL~~  250 (364)
T 3ljn_A          237 VNME----DNEHTVPLYL  250 (364)
T ss_dssp             TTCC----CTTSCCHHHH
T ss_pred             CCCC----CCCCCCHHHH
Confidence            4443    4566677543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=1.3e-31  Score=243.60  Aligned_cols=168  Identities=26%  Similarity=0.224  Sum_probs=145.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCC-CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPC-LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~-l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .+|||.|+..|++++|++|++.++. ++..+..  |+||||+|+..|+.++|++|+++|++++..|.          .|.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~   70 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDER--GFTPLIWASAFGEIETVRFLLEWGADPHILAK----------ERE   70 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTT--SCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----------TCC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCC--CCCHHHHHHHcCCHHHHHHHHHcCCCchhhcc----------cCC
Confidence            4679999999999999999999887 4444444  48999999999999999999999999999988          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+.++
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~  117 (172)
T 3v30_A           71 SALSLASTGGYTDIVGLLLERDVD---------------------------------INIYDWNGGTPLLYAVRGNHVKC  117 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999976543                                 77888899999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLP  233 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~Tp  233 (489)
                      |++|+++|++++..+..          |.||||+|+..|+.+++++|+++|+++...+..|.||
T Consensus       118 v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          118 VEALLARGADLTTEADS----------GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             HHHHHHcCCCccccCCC----------CCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            99999999999998876          9999999999999999999999999999888888887

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=6.1e-31  Score=238.02  Aligned_cols=156  Identities=26%  Similarity=0.422  Sum_probs=133.6

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      .|.||||+|+..|+.++|++|++.|++++..|.          .|.||||+|+..|+.+++++|++.+..          
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   61 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE----------EGFTPLMWAAAHGQIAVVEFLLQNGAD----------   61 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCC----------CCCCHHHHHHHCCCHHHHHHHHHcCCC----------
Confidence            357889999999999999999888888888887          888999999999999999988876543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        62 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~  108 (167)
T 3v31_A           62 -----------------------PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWN----------GGTPLLY  108 (167)
T ss_dssp             -----------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------SCCHHHH
T ss_pred             -----------------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCC----------CCCHHHH
Confidence                                   5667788889999999999999999999888888888766          8889999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       109 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (167)
T 3v31_A          109 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESH  157 (167)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999999888888899999999999888888887654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=2.3e-31  Score=257.86  Aligned_cols=219  Identities=21%  Similarity=0.203  Sum_probs=152.5

Q ss_pred             CcccCCCCCCchHHHHHHHhC-------------cHHHHHHHHHcCCCCCCc-CCCCCcccccCCCCChHHHHHHHcCCH
Q 011309           36 LAKYSTFGGLNSPLHFAAAKG-------------HNEIVALLLENGADVNSR-NYCGQVTRADYLSGRTALHFAAVNGHV  101 (489)
Q Consensus        36 l~~~~~~~~g~TpLh~Aa~~G-------------~~eivk~LLe~Gad~n~~-d~~g~i~~~d~~~G~TpLh~Aa~~g~~  101 (489)
                      ++..+.+  |+||||+|+..|             +.+++++|+++|++++.. |.          .|+||||+|+..|+.
T Consensus         3 vn~~d~~--g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~----------~g~t~L~~A~~~g~~   70 (253)
T 1yyh_A            3 VNVRGPD--GFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR----------TGETALHLAARYSRS   70 (253)
T ss_dssp             ---------------------------------------------------CCCT----------TSCCHHHHHHHTTCH
T ss_pred             CCCCCCC--CCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCC----------CCCcHHHHHHHcCCH
Confidence            4444444  499999999987             899999999999998654 65          899999999999999


Q ss_pred             HHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCC
Q 011309          102 RCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHA  178 (489)
Q Consensus       102 ~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Ga  178 (489)
                      ++|++|++.+...+   ..+.++++.+...+....+..+....  ...++..+..|.||||+|+..|+.+++++|+++|+
T Consensus        71 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~  148 (253)
T 1yyh_A           71 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA  148 (253)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST--TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence            99999999876543   45677888888877777666654432  12478889999999999999999999999999999


Q ss_pred             CcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCC
Q 011309          179 NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVM  257 (489)
Q Consensus       179 dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~  257 (489)
                      +++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+. ++.+.
T Consensus       149 ~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          149 DVNAVDDL----------GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             CTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc
Confidence            99999876          99999999999999999999999999999999999999999999999998877665 44444


Q ss_pred             CCCCCCCCcchhhHHHHHHHHHcCCcccc
Q 011309          258 PRFHPSNYLSLPLLSVLNVARECGLLSST  286 (489)
Q Consensus       258 ~~~~~~~~~~~pl~~~l~~a~~~G~~~~~  286 (489)
                      .    +..+.+|    +.+|.+.|+..+.
T Consensus       219 ~----d~~g~tp----l~~A~~~g~~~i~  239 (253)
T 1yyh_A          219 T----DHMDRLP----RDIAQERMHHDIV  239 (253)
T ss_dssp             C----CTTCCCH----HHHHHHTTCHHHH
T ss_pred             c----ccCCCCH----HHHHHHcCCHHHH
Confidence            3    4556677    4566677765443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=1.4e-30  Score=236.70  Aligned_cols=155  Identities=37%  Similarity=0.502  Sum_probs=147.0

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      +.|+|+.|++.|+.++|++|+++|++++.+|.          .|.||||+|+..|+.+++++|++.+..           
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------   72 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDA----------SGWTPLHLAAFNGHLEIVEVLLKNGAD-----------   72 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            48999999999999999999999999999998          899999999999999999999987543           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                            ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|
T Consensus        73 ----------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A  120 (169)
T 2y1l_E           73 ----------------------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDME----------GHTPLHLA  120 (169)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHH
T ss_pred             ----------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHHH
Confidence                                  6778889999999999999999999999999999998876          99999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       205 a~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      +..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       121 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          121 AMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.1e-30  Score=234.61  Aligned_cols=157  Identities=27%  Similarity=0.370  Sum_probs=144.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .+++||.|++.|++++|++|++.|++++..+..+  +||||+|+. |+.+++++|+++|++++.+|.          .|.
T Consensus         5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~----------~g~   71 (162)
T 1ihb_A            5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMKL-GNPEIARRLLLRGANPDLKDR----------TGF   71 (162)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTS--CCHHHHCCS-SCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred             HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccC--ccHHHHHHc-CcHHHHHHHHHcCCCCCCCCC----------CCC
Confidence            4689999999999999999999999988776655  999999999 999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+.++
T Consensus        72 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~  118 (162)
T 1ihb_A           72 AVIHDAARAGFLDTLQTLLEFQAD---------------------------------VNIEDNEGNLPLHLAAKEGHLRV  118 (162)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999986543                                 77889999999999999999999


Q ss_pred             HHHHHhcCCC-cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          170 VQLLLDLHAN-VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       170 v~~LL~~Gad-vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                      +++|+++|++ ++..+..          |.||||+|+..|+.+++++|+++|||
T Consensus       119 v~~Ll~~g~~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          119 VEFLVKHTASNVGHRNHK----------GDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHHHSCCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHHccCCCCCCcCCC----------CCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999998 5887766          99999999999999999999999986

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.97  E-value=7.6e-31  Score=243.11  Aligned_cols=156  Identities=26%  Similarity=0.311  Sum_probs=147.3

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      .|+||||+|+..|+.++|++|+++|++++..|.          .|+||||+|+..|+.+++++|++.+..          
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   93 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDI----------EGSTALIWAVKNNRLGIAEKLLSKGSN----------   93 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHHTCC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccccc----------cCccHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence            349999999999999999999999999999998          899999999999999999999986543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        94 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~  140 (192)
T 2rfm_A           94 -----------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLE----------GETPLIV  140 (192)
T ss_dssp             -----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTT----------CCCHHHH
T ss_pred             -----------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHH
Confidence                                   7788899999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      |+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.+.
T Consensus       141 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999998653

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.97  E-value=2.1e-30  Score=246.58  Aligned_cols=189  Identities=27%  Similarity=0.316  Sum_probs=153.3

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      |+||||+|+..|+.++|++||+. |++++.+|.          .|+||||+|+..|+.+++++|++.+...         
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~----------~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---------   63 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA----------MGETALHIAALYDNLEAAMVLMEAAPEL---------   63 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHHCGGG---------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCchh---------
Confidence            48999999999999999999998 999999998          9999999999999999999999864320         


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcc---ccCCCCCcH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM---DLIGAGSTP  200 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~---~~~~~G~Tp  200 (489)
                                         .....+..|..|.||||+|+..|+.+++++|+++|++++..+.......   .....|.||
T Consensus        64 -------------------~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~  124 (232)
T 2rfa_A           64 -------------------VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP  124 (232)
T ss_dssp             -------------------GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH
T ss_pred             -------------------ccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCH
Confidence                               0011366788999999999999999999999999999998764210000   011249999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH----HHhcCCCC-CCCCC--CCCCCCcchhhH
Q 011309          201 LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE----PLLAPSSD-AVMPR--FHPSNYLSLPLL  271 (489)
Q Consensus       201 Lh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~----~LL~~~~~-~~~~~--~~~~~~~~~pl~  271 (489)
                      ||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+..|+.+++    ++|.+.+. .....  ...+..+.+|++
T Consensus       125 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~  202 (232)
T 2rfa_A          125 LSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK  202 (232)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999876    66665443 32111  122556677754

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.97  E-value=3.8e-30  Score=229.84  Aligned_cols=151  Identities=27%  Similarity=0.330  Sum_probs=135.8

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .|+||.|+..|+.++|++|+++|++++ .+.          .|.||||+|+..|+.+++++|++.+..            
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------   59 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDW----------LGTSPLHLAAQYGHFSTTEVLLRAGVS------------   59 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT----------TCCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence            689999999999999999999999887 354          799999999999999999999976433            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                                           ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+
T Consensus        60 ---------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~  108 (153)
T 1awc_B           60 ---------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWAT  108 (153)
T ss_dssp             ---------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHH
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCC----------CCCHHHHHH
Confidence                                 6777888999999999999999999999999999988866          999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       206 ~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      ..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|.
T Consensus       109 ~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~  153 (153)
T 1awc_B          109 EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHhC
Confidence            999999999999999999999999999999999999999998873

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=6.8e-30  Score=232.24  Aligned_cols=157  Identities=34%  Similarity=0.480  Sum_probs=146.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      ...++|+.|++.|++++|++|++.|++++..+..+  .||||+|+..|+.++|++|+++|++++..|.          .|
T Consensus        13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g   80 (169)
T 2y1l_E           13 DLGKKLLEAARAGRDDEVRILMANGADVNAEDASG--WTPLHLAAFNGHLEIVEVLLKNGADVNAVDH----------AG   80 (169)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred             cccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCccCC----------CC
Confidence            44679999999999999999999999988776655  8999999999999999999999999999998          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.+
T Consensus        81 ~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  127 (169)
T 2y1l_E           81 MTPLRLAALFGHLEIVEVLLKNGAD---------------------------------VNANDMEGHTPLHLAAMFGHLE  127 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999987543                                 6788899999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  220 (489)
                      ++++|+++|++++..+..          |.||||+|+..|+.+++++|++.|
T Consensus       128 ~v~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          128 IVEVLLKNGADVNAQDKF----------GKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             HHHHHHHcCCCCCCcCCC----------CCCHHHHHHHhCCHHHHHHHHHcC
Confidence            999999999999998876          999999999999999999999876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=2.8e-30  Score=232.01  Aligned_cols=154  Identities=32%  Similarity=0.437  Sum_probs=145.4

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .||||+|+..|+.++|++|+++|++++..|.          .|+||||+|+. |+.+++++|++.+..            
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~-~~~~~v~~Ll~~g~~------------   62 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNG----------FGRTALQVMKL-GNPEIARRLLLRGAN------------   62 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----------TSCCHHHHCCS-SCHHHHHHHHHTTCC------------
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCc----------cCccHHHHHHc-CcHHHHHHHHHcCCC------------
Confidence            7999999999999999999999999999998          99999999999 999999999987543            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                                           ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+
T Consensus        63 ---------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~A~  111 (162)
T 1ihb_A           63 ---------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----------GNLPLHLAA  111 (162)
T ss_dssp             ---------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHH
T ss_pred             ---------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHHH
Confidence                                 6788889999999999999999999999999999999876          999999999


Q ss_pred             HcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          206 CGGNLKCCQVLLSRGAS-RMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       206 ~~g~~eivk~LL~~Gad-vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      ..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|.+.+
T Consensus       112 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999998 6999999999999999999999998887654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.97  E-value=4.1e-30  Score=232.59  Aligned_cols=161  Identities=25%  Similarity=0.287  Sum_probs=149.0

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      .+.||||.|+..|++++|++|++.+.+++..+..+  +||||+|+..|+.++|++|+++|++++..+.          .|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g   69 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEG--FTPLMWAAAHGQIAVVEFLLQNGADPQLLGK----------GR   69 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCC--CCHHHHHHHCCCHHHHHHHHHcCCCCCCcCC----------CC
Confidence            34578999999999999999999999888777655  8999999999999999999999999999998          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.+
T Consensus        70 ~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  116 (167)
T 3v31_A           70 ESALSLACSKGYTDIVKMLLDCGVD---------------------------------VNEYDWNGGTPLLYAVHGNHVK  116 (167)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCcCCCCCCCHHHHHHHcCCHH
Confidence            9999999999999999999986543                                 7788999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  224 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn  224 (489)
                      ++++|+++|++++..+..          |.||||+|+..|+.+++++|+++++++.
T Consensus       117 ~v~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          117 CVKMLLESGADPTIETDS----------GYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999999998876          9999999999999999999999877643

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=5.3e-30  Score=232.99  Aligned_cols=157  Identities=27%  Similarity=0.417  Sum_probs=145.3

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCC-CCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGAD-VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad-~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      +.||||+|+..|+.++|++|++.|.+ ++..|.          .|+||||+|+..|+.+++++|++.+..          
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   61 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE----------RGFTPLIWASAFGEIETVRFLLEWGAD----------   61 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCT----------TSCCHHHHHHHTTCHHHHHHHHHHTCC----------
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            37999999999999999999999887 788887          899999999999999999999987543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        62 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~  108 (172)
T 3v30_A           62 -----------------------PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN----------GGTPLLY  108 (172)
T ss_dssp             -----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHH
T ss_pred             -----------------------chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHH
Confidence                                   6788889999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      |+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|.+...
T Consensus       109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~  159 (172)
T 3v30_A          109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL  159 (172)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988876543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-30  Score=263.14  Aligned_cols=196  Identities=14%  Similarity=0.086  Sum_probs=154.0

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCcc-cCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChH
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAK-YSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTA   91 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~-~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~Tp   91 (489)
                      .+|.|+..+..++++.|++.|.+++. .+..+  +||||+|+..|+.++|++||++|++++.+|.          .|+||
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g--~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~----------~g~Tp  167 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--NTPLHWLTSIANLELVKHLVKHGSNRLYGDN----------MGESC  167 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----------TCCCH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCC--CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCCCH
Confidence            35888888999999999999999988 56555  9999999999999999999999999999998          99999


Q ss_pred             HHHHHHcCC---HHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH----c
Q 011309           92 LHFAAVNGH---VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL----N  164 (489)
Q Consensus        92 Lh~Aa~~g~---~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~----~  164 (489)
                      ||+|+..|+   .++++.|++.+                                ...++.+|..|.||||+|+.    .
T Consensus       168 Lh~A~~~g~~~~~~~~~~ll~~~--------------------------------~~~~~~~d~~g~tpLh~A~~~~~~~  215 (327)
T 1sw6_A          168 LVKAVKSVNNYDSGTFEALLDYL--------------------------------YPCLILEDSMNRTILHHIIITSGMT  215 (327)
T ss_dssp             HHHHHHSSHHHHTTCHHHHHHHH--------------------------------GGGGGEECTTCCCHHHHHHHHHTST
T ss_pred             HHHHHHhcccccHHHHHHHHHhh--------------------------------hccccCCCCCCCCHHHHHHHHcccc
Confidence            999999999   67777777532                                12378889999999999999    8


Q ss_pred             CCHHHHHHHHhc--------------------CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309          165 GYFDCVQLLLDL--------------------HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM  224 (489)
Q Consensus       165 g~~e~v~~LL~~--------------------Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn  224 (489)
                      |+.+++++|++.                    |++++..+..          |.||||+|+.      +++|+++  +++
T Consensus       216 g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~----------g~t~L~~a~~------~~~Ll~~--~~n  277 (327)
T 1sw6_A          216 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE----------RKDSILENLD------LKWIIAN--MLN  277 (327)
T ss_dssp             TCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------------------CHHHHHCS------HHHHHHH--TTT
T ss_pred             ccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc----------CCChhHHHHH------HHHHHHh--CCC
Confidence            999999999987                    8888888866          9999999985      8999988  688


Q ss_pred             ccCCCCCcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhHHHH
Q 011309          225 SLNCNGWLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLLSVL  274 (489)
Q Consensus       225 ~~d~~G~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~l  274 (489)
                      .+|.+|+||||+|+..|+.+++++|++ +++++..    +..+.+|++.++
T Consensus       278 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~----d~~G~TpL~~A~  324 (327)
T 1sw6_A          278 AQDSNGDTCLNIAARLGNISIVDALLDYGADPFIA----NKSGLRPVDFGA  324 (327)
T ss_dssp             CCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCC----CTTSCCGGGGTC
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc----CCCCCCHHHHHH
Confidence            899999999999999999998877755 4555444    556677766543

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=7.7e-30  Score=233.88  Aligned_cols=165  Identities=24%  Similarity=0.304  Sum_probs=123.3

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .++||.|++.|++++|++|++.+. +++..+..+  +||||+|+..|+.++|++|+++|++++..|.          .|.
T Consensus         6 ~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~   73 (179)
T 3f6q_A            6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHG--FSPLHWACREGRSAVVEMLIMRGARINVMNR----------GDD   73 (179)
T ss_dssp             -CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHhcCcccccccCCCC--CCHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----------CCC
Confidence            456888888888888888887743 444444433  7888888888888888888888888887776          777


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+.++
T Consensus        74 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~~~~~~  120 (179)
T 3f6q_A           74 TPLHLAASHGHRDIVQKLLQYKAD---------------------------------INAVNEHGNVPLHYACFWGQDQV  120 (179)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHH
Confidence            888888888888888888765433                                 66677778888888888888888


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG  230 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G  230 (489)
                      +++|+++|++++..+..          |.||||+|+..++.+++++|+++|++++..+..+
T Consensus       121 v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          121 AEDLVANGALVSICNKY----------GEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             HHHHHHTTCCSSBCCTT----------SCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             HHHHHHCCCCcchhccC----------CCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            88888888887777765          7788888888778888888888888877665543

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=1.3e-30  Score=257.85  Aligned_cols=180  Identities=18%  Similarity=0.175  Sum_probs=163.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC-
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG-   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G-   88 (489)
                      ..||||+|+..|+.++|++|+++|++++..+..+  +||||+|+..|+.++|++|+++|++++..+.          .| 
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~g~  129 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKG--NTALYYAVDSGNMQTVKLFVKKNWRLMFYGK----------TGW  129 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSS----------SGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC--CcHHHHHHHcCCHHHHHHHHhcCCCCCccCC----------CCC
Confidence            4689999999999999999999999998877655  9999999999999999999999999999998          78 


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYF  167 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~  167 (489)
                      .||||+|+..|+.+++++|++.+..                                   ..+. .|.||||+|+..|+.
T Consensus       130 ~t~L~~A~~~~~~~~v~~Ll~~g~~-----------------------------------~~~~~~g~t~L~~A~~~g~~  174 (285)
T 3kea_A          130 KTSFYHAVMLNDVSIVSYFLSEIPS-----------------------------------TFDLAILLSCIHITIKNGHV  174 (285)
T ss_dssp             GSHHHHHHHTTCHHHHHHHHTTSCT-----------------------------------TCCCSTHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCc-----------------------------------cccccCCccHHHHHHHcChH
Confidence            7999999999999999999976532                                   1222 789999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcH-HHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP-LHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~Tp-Lh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      ++|++|+++|++++..+..          |.|| ||+|+..|+.+++++|+++|++++.+|.       .|+..|+.+++
T Consensus       175 ~~v~~Ll~~gad~n~~~~~----------g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~~-------~a~~~~~~~iv  237 (285)
T 3kea_A          175 DMMILLLDYMTSTNTNNSL----------LFIPDIKLAIDNKDIEMLQALFKYDINIYSANL-------ENVLLDDAEIA  237 (285)
T ss_dssp             HHHHHHHHHHHHTCTTCCC----------BCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTTG-------GGGTTTCHHHH
T ss_pred             HHHHHHHHcCCCCCcccCC----------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCh-------hhhhcCCHHHH
Confidence            9999999999999999876          8897 9999999999999999999999999983       56779999999


Q ss_pred             HHhcCCC
Q 011309          247 PLLAPSS  253 (489)
Q Consensus       247 ~LL~~~~  253 (489)
                      ++|.+.+
T Consensus       238 ~~Ll~~g  244 (285)
T 3kea_A          238 KMIIEKH  244 (285)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHcC
Confidence            8887643

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.96  E-value=3.1e-30  Score=246.57  Aligned_cols=182  Identities=25%  Similarity=0.241  Sum_probs=157.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|+++|++++..+..+  +||||+|+..|+.+++++|+++|++++....    ....+..|.
T Consensus        45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----~~~~~~~g~  118 (236)
T 1ikn_D           45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRG--NTPLHLACEQGCLASVGVLTQSCTTPHLHSI----LKATNYNGH  118 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTC--CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG----GGCCCTTCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHhcccchhHHHH----hhccCCCCC
Confidence            3589999999999999999999999998877655  9999999999999999999999987432110    111223899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccC-CCccHHHHHHHcCCHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAAD-GGITALHMAALNGYFD  168 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~-~G~TpLh~Aa~~g~~e  168 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++.++. .|.||||+|+..|+.+
T Consensus       119 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D          119 TCLHLASIHGYLGIVELLVSLGAD---------------------------------VNAQEPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCC---------------------------------TTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999987644                                 677777 8999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCcHHHHHHHc
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRM--SLNCNGWLPLDVARMW  240 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn--~~d~~G~TpL~~A~~~  240 (489)
                      +|++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++..  ..+..|.||++.+...
T Consensus       166 ~v~~Ll~~ga~~~~~~~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  229 (236)
T 1ikn_D          166 LVSLLLKCGADVNRVTYQ----------GYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEF  229 (236)
T ss_dssp             HHHHHHTTTCCSCCCCTT----------CCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC---
T ss_pred             HHHHHHHcCCCCCcccCC----------CCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhccc
Confidence            999999999999999876          9999999999999999999999999866  7789999988766543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.9e-29  Score=233.66  Aligned_cols=156  Identities=24%  Similarity=0.253  Sum_probs=146.0

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      ..||||+|+..|+.++|++|++.|++++..+..+  +||||+|+..|+.++|++|+++|++++..|.          .|.
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~  102 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG--STALIWAVKNNRLGIAEKLLSKGSNVNTKDF----------SGK  102 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCT----------TSC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhccccccccccC--ccHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCC
Confidence            4578999999999999999999999988776655  9999999999999999999999999999998          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+.++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~  149 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGAN---------------------------------VNDRNLEGETPLIVASKYGRSEI  149 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------SSCCCTTCCCHHHHHHHHTCHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999987544                                 77889999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  220 (489)
                      +++|+++|++++..+..          |.||||+|+..|+.+++++|+++|
T Consensus       150 v~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          150 VKKLLELGADISARDLT----------GLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             HHHHHHTTCCTTCBCTT----------SCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCcCCC----------CCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999876          999999999999999999999875

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=6.4e-29  Score=221.86  Aligned_cols=150  Identities=29%  Similarity=0.373  Sum_probs=139.4

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +++|+.|++.|++++|++|++.|++++.   +..|.||||+|+..|+.+++++|+++|++++..|.          .|+|
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~t   69 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----------VDRT   69 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----------TCCC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------CCCC
Confidence            6899999999999999999999997752   33448999999999999999999999999999998          8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  170 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v  170 (489)
                      |||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+.+++
T Consensus        70 ~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~~v  116 (153)
T 1awc_B           70 PLHMAASEGHANIVEVLLKHGAD---------------------------------VNAKDMLKMTALHWATEHNHQEVV  116 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHcChHHHHHHHHHcCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999976543                                 778899999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 011309          171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  216 (489)
Q Consensus       171 ~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  216 (489)
                      ++|+++|++++..+..          |.||||+|+..|+.+++++|
T Consensus       117 ~~Ll~~ga~~~~~~~~----------g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          117 ELLIKYGADVHTQSKF----------CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCCccccCCC----------CCCHHHHHHHcCCHHHHHHh
Confidence            9999999999999876          99999999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.8e-29  Score=227.94  Aligned_cols=162  Identities=31%  Similarity=0.411  Sum_probs=141.2

Q ss_pred             CCCCCchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCccccc
Q 011309            5 FGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRAD   84 (489)
Q Consensus         5 ~gcs~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d   84 (489)
                      ++.+...++||.|++.|++++|++|++.+.. +....+..|+||||+|+..|+.++|++|+++|++++.+|.        
T Consensus         3 ~~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~--------   73 (165)
T 3twr_A            3 MGNSEADRQLLEAAKAGDVETVKKLCTVQSV-NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK--------   73 (165)
T ss_dssp             ---CHHHHHHHHHHHHTCHHHHHHHCCTTTT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------
T ss_pred             CCcchhhHHHHHHHHhCCHHHHHHHHHcCCC-CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCC--------
Confidence            4455567899999999999999999996542 2233334458999999999999999999999999999998        


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309           85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  164 (489)
Q Consensus        85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  164 (489)
                        .|+||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..
T Consensus        74 --~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~  118 (165)
T 3twr_A           74 --GGLVPLHNACSYGHYEVAELLVKHGAV---------------------------------VNVADLWKFTPLHEAAAK  118 (165)
T ss_dssp             --TSCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHT
T ss_pred             --CCCCHHHHHHHcCcHHHHHHHHhCCCC---------------------------------CCCcCCCCCCHHHHHHHc
Confidence              899999999999999999999987543                                 778889999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 011309          165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA  221 (489)
Q Consensus       165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Ga  221 (489)
                      |+.+++++|+++|++++..+..          |.||||+|+. |+.+++++|+++||
T Consensus       119 ~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          119 GKYEICKLLLQHGADPTKKNRD----------GNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTT----------SCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCHHHHHHHHHcCCCCcccCCC----------CCChhHhHhc-CChHHHHHHhhccc
Confidence            9999999999999999999976          9999999877 89999999999886

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.8e-29  Score=227.90  Aligned_cols=156  Identities=29%  Similarity=0.386  Sum_probs=143.5

Q ss_pred             CchHHHHHHHhCcHHHHHHHHH-cCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe-~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      +.||||.|+..|+.++|++|++ .+.+++..+.          .|+||||+|+..|+.+++++|++.+..          
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   67 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG----------RQSTPLHFAAGYNRVSVVEYLLQHGAD----------   67 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTT----------TCCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCcccccc----------CCCCHHHHHHHcChHHHHHHHHhcCCC----------
Confidence            4899999999999999999998 4677777776          899999999999999999999987543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        68 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~  114 (165)
T 3twr_A           68 -----------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLW----------KFTPLHE  114 (165)
T ss_dssp             -----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHH
T ss_pred             -----------------------CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCC----------CCCHHHH
Confidence                                   7788899999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      |+..|+.+++++|+++|++++.+|.+|+||||+|+. ++.+++++|...+.
T Consensus       115 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999877 88999999987654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=4.9e-29  Score=222.68  Aligned_cols=153  Identities=24%  Similarity=0.299  Sum_probs=143.0

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      +.||||+|+..|+.+++++|++. +.+++..|.          .|+||||+ +..|+.+++++|++.+..          
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~-~~~~~~~~v~~Ll~~g~~----------   60 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR----------FGKTALQV-MMFGSTAIALELLKQGAS----------   60 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----------TSCCHHHH-SCTTCHHHHHHHHHTTCC----------
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCC----------CCCcHHHH-HHcCCHHHHHHHHHCCCC----------
Confidence            36999999999999999999998 459999988          89999999 999999999999987544          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        61 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~t~L~~  107 (156)
T 1bd8_A           61 -----------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----------GALPIHL  107 (156)
T ss_dssp             -----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHH
T ss_pred             -----------------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCC----------CCcHHHH
Confidence                                   7788899999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      |+..|+.+++++|+++ ++++.+|.+|+||||+|+..|+.+++++|.++
T Consensus       108 A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          108 AVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999 99999999999999999999999999998764

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.96  E-value=7.2e-29  Score=227.40  Aligned_cols=160  Identities=28%  Similarity=0.364  Sum_probs=146.4

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      +.++||.|+..|+.++|++||+. +.+++..|.          .|+||||+|+..|+.+++++|++.+..          
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   64 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD----------HGFSPLHWACREGRSAVVEMLIMRGAR----------   64 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCC----------CCCCHHHHHHHcCcHHHHHHHHHcCCC----------
Confidence            37999999999999999999998 678999988          999999999999999999999987544          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        65 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~  111 (179)
T 3f6q_A           65 -----------------------INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEH----------GNVPLHY  111 (179)
T ss_dssp             -----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHH
T ss_pred             -----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHH
Confidence                                   7788899999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC-CCCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS-DAVM  257 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~-~~~~  257 (489)
                      |+..|+.+++++|+++|++++.+|..|+|||++|+..++.+++++|.+.+ +.+.
T Consensus       112 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             HHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            99999999999999999999999999999999999999999888776644 4433

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=3.2e-29  Score=245.01  Aligned_cols=184  Identities=21%  Similarity=0.246  Sum_probs=142.7

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHhhcCCCC-------c--ccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCC
Q 011309            9 ASGERLVSAARD---GDFVEAKMLLDCNPCL-------A--KYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY   76 (489)
Q Consensus         9 ~s~t~L~~Aa~~---G~~~~Vk~LL~~g~~l-------~--~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~   76 (489)
                      ...||||+|+..   |+.++|++||+.|++.       +  ....+..|+||||+|+..|+.++|++||++|++++..+.
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~  132 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAAN  132 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBC
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccc
Confidence            446899999987   9999999999998642       1  122333459999999999999999999999999999884


Q ss_pred             CCC----cccccCCCCChHHHHHHHcCCHHHHHHHHH---ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcc
Q 011309           77 CGQ----VTRADYLSGRTALHFAAVNGHVRCIRLVVA---DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK  149 (489)
Q Consensus        77 ~g~----i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~  149 (489)
                      .+.    .....+..|.||||+|+..|+.++|++|++   .+..                                 ++.
T Consensus       133 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad---------------------------------~~~  179 (273)
T 2pnn_A          133 GDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD---------------------------------ISA  179 (273)
T ss_dssp             SGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC---------------------------------TTC
T ss_pred             ccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC---------------------------------cee
Confidence            110    001111269999999999999999999998   5443                                 788


Q ss_pred             ccCCCccHHHHHHHcCC---------HHHHHHHHhcCCCccc-------ccccCCCccccCCCCCcHHHHHHHcCCHHHH
Q 011309          150 AADGGITALHMAALNGY---------FDCVQLLLDLHANVSA-------VTFHYGTSMDLIGAGSTPLHFAACGGNLKCC  213 (489)
Q Consensus       150 ~d~~G~TpLh~Aa~~g~---------~e~v~~LL~~Gadvn~-------~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eiv  213 (489)
                      +|..|.||||+|+..|+         .+++++|+++|++++.       .+..          |.||||+|+..|+.++|
T Consensus       180 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~----------g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRK----------GLTPLALAASSGKIGVL  249 (273)
T ss_dssp             CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHH
T ss_pred             eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCC----------CCCHHHHHHHhChHHHH
Confidence            99999999999999998         8999999999999974       5654          99999999999999999


Q ss_pred             HHHHHcCC-CCCccCCCCCcHHH
Q 011309          214 QVLLSRGA-SRMSLNCNGWLPLD  235 (489)
Q Consensus       214 k~LL~~Ga-dvn~~d~~G~TpL~  235 (489)
                      ++||++|| |+......+++|-+
T Consensus       250 ~~Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          250 AYILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHHHTC--------------
T ss_pred             HHHHHCCCCCchhhhhhhhhccC
Confidence            99999999 88888888877654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=3.8e-30  Score=247.68  Aligned_cols=185  Identities=20%  Similarity=0.139  Sum_probs=136.3

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      +.||||.|++.|+.+.++.||++|.+++.. .  .|.||||+|+..|+.++|++||++|+++|.+|.          .|+
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~--~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----------~g~   71 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-P--LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND----------EGI   71 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----------TSC
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccC-c--hhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCC
Confidence            468999999999999999999999998753 3  348999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+.+                                 +|.+|..|.||||+|+..|+.++
T Consensus        72 t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpL~~A~~~~~~~~  118 (239)
T 1ycs_B           72 TALHNAVCAGHTEIVKFLVQFGVN---------------------------------VNAADSDGWTPLHCAASCNNVQV  118 (239)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCccCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999987544                                 78899999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCCCCcc---------CCCCCcHHHHHH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVLLSRGASRMSL---------NCNGWLPLDVAR  238 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A--a~~g~~eivk~LL~~Gadvn~~---------d~~G~TpL~~A~  238 (489)
                      |++|+++|++++..+..         .+.||||+|  +..|+.+++++|+++|++++..         +..+.+++++|.
T Consensus       119 v~~Ll~~ga~~~~~~~~---------~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~  189 (239)
T 1ycs_B          119 CKFLVESGAAVFAMTYS---------DMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPM  189 (239)
T ss_dssp             HHHHHHTTCCTTCCCSS---------SCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCB
T ss_pred             HHHHHHcCCCcceecCC---------CCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccc
Confidence            99999999999998876         144999999  8889999999999999998876         566888888887


Q ss_pred             HcCcHhHHHHhcC
Q 011309          239 MWGRHWLEPLLAP  251 (489)
Q Consensus       239 ~~g~~~i~~LL~~  251 (489)
                      ..|.  ++.+|.+
T Consensus       190 ~~G~--~i~vl~~  200 (239)
T 1ycs_B          190 KEGD--CMTIIHR  200 (239)
T ss_dssp             CSSC--EEEECCC
T ss_pred             cCCC--EEEEEEe
Confidence            7775  3344443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=2.8e-28  Score=217.77  Aligned_cols=153  Identities=27%  Similarity=0.354  Sum_probs=139.6

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      .+++||.|+..|++++|++|++. +.+++..+..  |+||||+ +..|+.+++++|+++|++++.+|.          .|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~--g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~----------~g   68 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF--GKTALQV-MMFGSTAIALELLKQGASPNVQDT----------SG   68 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTT--SCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCC--CCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCC----------CC
Confidence            46899999999999999999998 2255555544  4999999 999999999999999999999998          99


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+..|+.+++++|++.+.+                                 ++.+|..|.||||+|+..|+.+
T Consensus        69 ~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~~~  115 (156)
T 1bd8_A           69 TSPVHDAARTGFLDTLKVLVEHGAD---------------------------------VNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHhChHH
Confidence            9999999999999999999987543                                 7788899999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  219 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  219 (489)
                      ++++|+++ ++++..+..          |.||||+|+..|+.+++++|+++
T Consensus       116 ~v~~Ll~~-~~~~~~~~~----------g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          116 VVSFLAAE-SDLHRRDAR----------GLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHTT-SCTTCCCTT----------SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             HHHHHHhc-cCCCCcCCC----------CCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999 999998876          99999999999999999999874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.3e-31  Score=257.09  Aligned_cols=179  Identities=21%  Similarity=0.184  Sum_probs=146.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .++||.|+..|++++|++|++.|++++..+..+  +||||+|+..|+.++|++|+++|+++|.+|.          .|+|
T Consensus        22 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g--~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~----------~g~t   89 (229)
T 2vge_A           22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEG--ITALHNAICGANYSIVDFLITAGANVNSPDS----------HGWT   89 (229)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCCC
T ss_pred             hHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC----------CCCC
Confidence            468888999999999999998888887766555  8899999999999999999998999888887          8889


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHH--HHcCCH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMA--ALNGYF  167 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~A--a~~g~~  167 (489)
                      |||+|+..|+.+++++|++.+..                                 ++..+ ..|.||||+|  +..|+.
T Consensus        90 pLh~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~~~~~g~tpL~~A~a~~~~~~  136 (229)
T 2vge_A           90 PLHCAASCNDTVICMALVQHGAA---------------------------------IFATTLSDGATAFEKCDPYREGYA  136 (229)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCC---------------------------------TTCCCSSTTCCTGGGCCTTSTTHH
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCC---------------------------------cccccCCCCCCHHHHHHHHhcChH
Confidence            99999999999999998876543                                 56665 5888999988  888889


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCcHhH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS--RMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad--vn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      +++++|+++|++++..+..          |.||||.++..+   .+++|++.|++  ++.+|.+|+||||+|+..|+.++
T Consensus       137 ~~v~~Ll~~ga~~~~~~~~----------~~~~l~~~~~~~---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~  203 (229)
T 2vge_A          137 DCATYLADVEQSMGLMNSG----------AVYALWDYSAEF---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGY  203 (229)
T ss_dssp             HHHHHHHHHHHHTTTSGGG----------EEEESSCBCCSS---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEE
T ss_pred             HHHHHHHHcCCCcccccCC----------chHHHHHHhhcc---ccccCccccccccccccCCCcccHHHHHHHcCCcce
Confidence            9999999988888888765          778887655443   33677888888  67788889999999999998887


Q ss_pred             HH
Q 011309          246 EP  247 (489)
Q Consensus       246 ~~  247 (489)
                      ++
T Consensus       204 v~  205 (229)
T 2vge_A          204 VP  205 (229)
T ss_dssp             EE
T ss_pred             ee
Confidence            64

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.96  E-value=9.5e-28  Score=222.91  Aligned_cols=170  Identities=18%  Similarity=0.154  Sum_probs=150.9

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCC-CCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGA-DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Ga-d~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      .||||.|+..|+.++|+.||+.+. +++..|.          .|.||||+|+..|+.+++++|++.+.+           
T Consensus         6 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------   64 (201)
T 3hra_A            6 VGALLEAANQRDTKKVKEILQDTTYQVDEVDT----------EGNTPLNIAVHNNDIEIAKALIDRGAD-----------   64 (201)
T ss_dssp             TTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCT----------TSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred             ccHHHHHHHhccHHHHHHHHHcCCCCCCCCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            799999999999999999999875 9999998          899999999999999999999987654           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL-~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                            ++..+..|.||||+|+..|+.+++++|+ ..+++++..+..          |.||||+
T Consensus        65 ----------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~----------g~t~L~~  112 (201)
T 3hra_A           65 ----------------------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRY----------GGNALIP  112 (201)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTT----------SCCSHHH
T ss_pred             ----------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCC----------CCcHHHH
Confidence                                  7788899999999999999999999999 667799988876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCc-----HhHHHHhcC-CCCCCCCCCCCCCCcchhhHH
Q 011309          204 AACGGNLKCCQVLLSRG-ASRMSLNCNGWLPLDVARMWGR-----HWLEPLLAP-SSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~G-advn~~d~~G~TpL~~A~~~g~-----~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~  272 (489)
                      |+..|+.+++++|+++| ++++.+|..|+||||+|+..++     .+++++|.+ +++++..    +..+.+|++.
T Consensus       113 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~----~~~g~t~l~~  184 (201)
T 3hra_A          113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIK----DNSGRTAMDY  184 (201)
T ss_dssp             HHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCC----CTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCcc----CCCCCCHHHH
Confidence            99999999999999999 9999999999999999999997     788777755 4555444    4556677543

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.96  E-value=4.9e-29  Score=241.18  Aligned_cols=173  Identities=24%  Similarity=0.256  Sum_probs=145.9

Q ss_pred             CchHHHHHHHHc---CCHHHHHHHhhcCCCCcccC---------CCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCC
Q 011309            9 ASGERLVSAARD---GDFVEAKMLLDCNPCLAKYS---------TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY   76 (489)
Q Consensus         9 ~s~t~L~~Aa~~---G~~~~Vk~LL~~g~~l~~~~---------~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~   76 (489)
                      ...||||+|+..   |+.++|++|++.|++++...         .+..|.||||+|+..|+.++|++|+++|++++..+.
T Consensus        42 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  121 (256)
T 2etb_A           42 TGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC  121 (256)
T ss_dssp             TTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCC
T ss_pred             CCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccc
Confidence            345899999999   99999999999987765322         223459999999999999999999999999999886


Q ss_pred             CCCcc---cccCCCCChHHHHHHHcCCHHHHHHHHH---ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccc
Q 011309           77 CGQVT---RADYLSGRTALHFAAVNGHVRCIRLVVA---DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA  150 (489)
Q Consensus        77 ~g~i~---~~d~~~G~TpLh~Aa~~g~~~~vk~LL~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~  150 (489)
                      .+...   ...+..|+||||+|+..|+.+++++|++   .+.+                                 +|.+
T Consensus       122 ~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~---------------------------------~n~~  168 (256)
T 2etb_A          122 GRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS---------------------------------LEAT  168 (256)
T ss_dssp             SGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC---------------------------------TTCC
T ss_pred             cccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC---------------------------------cCcc
Confidence            11000   0001129999999999999999999998   5543                                 7889


Q ss_pred             cCCCccHHHHHHH--cCCHH-------HHHHHHhcCCCc-------ccccccCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 011309          151 ADGGITALHMAAL--NGYFD-------CVQLLLDLHANV-------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  214 (489)
Q Consensus       151 d~~G~TpLh~Aa~--~g~~e-------~v~~LL~~Gadv-------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  214 (489)
                      |..|.||||+|+.  .++.+       ++++|+++|+++       +..|..          |.||||+|+..|+.++|+
T Consensus       169 d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~  238 (256)
T 2etb_A          169 DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ----------GLTPLKLAAKEGKIEIFR  238 (256)
T ss_dssp             CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCC----------CCCHHHHHHHhCCHHHHH
Confidence            9999999999999  88988       999999999999       777766          999999999999999999


Q ss_pred             HHHHcCCCCC
Q 011309          215 VLLSRGASRM  224 (489)
Q Consensus       215 ~LL~~Gadvn  224 (489)
                      +||++|++..
T Consensus       239 ~Ll~~g~~~~  248 (256)
T 2etb_A          239 HILQREFSGA  248 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHhCCCCCC
Confidence            9999987653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=8.4e-28  Score=228.14  Aligned_cols=200  Identities=20%  Similarity=0.142  Sum_probs=168.8

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC----cccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP----FEVM  120 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~----~~~~  120 (489)
                      +.||||+|+..|+.+++++|++.|++++..+.          .|.||||+|+..|+.+++++|++.+.....    .+.+
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t   78 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEAGYDVRQPDK----------ENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST   78 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred             cchHHHHHHHcCChHHHHHHHHcCCCcCCCCC----------CCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence            38999999999999999999999999999998          899999999999999999999998764442    3567


Q ss_pred             ccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcH
Q 011309          121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP  200 (489)
Q Consensus       121 ~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~Tp  200 (489)
                      +++.+...+....+..+...   +..++..+..|.||||+|+..|+.+++++|+++|++++..+..          |.||
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~----------g~t~  145 (240)
T 3eu9_A           79 PLHWATRQGHLSMVVQLMKY---GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQN----------GMTP  145 (240)
T ss_dssp             HHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCH
T ss_pred             hhHHHHHcCCHHHHHHHHHc---CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCC----------CCcH
Confidence            77888777776666655433   4457788899999999999999999999999999999988876          9999


Q ss_pred             HHHHHHcCC-HHHHHHHHHcCCCCCccCC-CCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhH
Q 011309          201 LHFAACGGN-LKCCQVLLSRGASRMSLNC-NGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       201 Lh~Aa~~g~-~eivk~LL~~Gadvn~~d~-~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~  271 (489)
                      ||+|+..++ .+++++|++.|++++..+. .|+||||+|+..|+.+++++|.+. ++++..    +..+.+|+.
T Consensus       146 l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----~~~g~t~l~  215 (240)
T 3eu9_A          146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ----NIKGESALD  215 (240)
T ss_dssp             HHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCB----CTTSCBHHH
T ss_pred             HHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCc----CCCCCCHHH
Confidence            999996665 8999999999999999987 899999999999999988877664 444433    445566643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=5e-29  Score=241.44  Aligned_cols=172  Identities=22%  Similarity=0.231  Sum_probs=142.8

Q ss_pred             chHHHHHHH---HcCCHHHHHHHhhcCCCC---------cccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCC
Q 011309           10 SGERLVSAA---RDGDFVEAKMLLDCNPCL---------AKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYC   77 (489)
Q Consensus        10 s~t~L~~Aa---~~G~~~~Vk~LL~~g~~l---------~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~   77 (489)
                      ..||||+|+   +.|+.++|++|++.|++.         .....+..|+||||+|+..|+.++|++||++|++++..+..
T Consensus        46 g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~  125 (260)
T 3jxi_A           46 GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARG  125 (260)
T ss_dssp             CCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEE
T ss_pred             CCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccc
Confidence            457999999   779999999999987542         22223334599999999999999999999999999998821


Q ss_pred             CCcc----cccCCCCChHHHHHHHcCCHHHHHHHHH---ccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccc
Q 011309           78 GQVT----RADYLSGRTALHFAAVNGHVRCIRLVVA---DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKA  150 (489)
Q Consensus        78 g~i~----~~d~~~G~TpLh~Aa~~g~~~~vk~LL~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~  150 (489)
                      +...    ...+..|+||||+|+..|+.++|++|++   .+..                                 ++.+
T Consensus       126 ~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~---------------------------------~~~~  172 (260)
T 3jxi_A          126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD---------------------------------LRRQ  172 (260)
T ss_dssp             CCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC---------------------------------TTCC
T ss_pred             cccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC---------------------------------Cccc
Confidence            0000    0001279999999999999999999998   5443                                 7889


Q ss_pred             cCCCccHHHHHHHcCC---------HHHHHHHHhcCCCc-------ccccccCCCccccCCCCCcHHHHHHHcCCHHHHH
Q 011309          151 ADGGITALHMAALNGY---------FDCVQLLLDLHANV-------SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ  214 (489)
Q Consensus       151 d~~G~TpLh~Aa~~g~---------~e~v~~LL~~Gadv-------n~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk  214 (489)
                      |..|.||||+|+..++         .+++++|+++|+++       +..+..          |.||||+|+..|+.++|+
T Consensus       173 d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~~v~  242 (260)
T 3jxi_A          173 DSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNND----------GLSPLMMAAKTGKIGIFQ  242 (260)
T ss_dssp             CTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTT----------SCCHHHHHHHTTCHHHHH
T ss_pred             CCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCC----------CCCHHHHHHHcCCHHHHH
Confidence            9999999999999888         79999999999999       556665          999999999999999999


Q ss_pred             HHHHcCCCCC
Q 011309          215 VLLSRGASRM  224 (489)
Q Consensus       215 ~LL~~Gadvn  224 (489)
                      +||++|++..
T Consensus       243 ~Ll~~g~~~~  252 (260)
T 3jxi_A          243 HIIRREIADA  252 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHhCCCcc
Confidence            9999987753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.95  E-value=2.2e-28  Score=246.70  Aligned_cols=188  Identities=12%  Similarity=-0.020  Sum_probs=139.7

Q ss_pred             CCHHHHHHHhhcCCCCcccCC------------CCCC---chHHHHHHHhCcHHHHHHHHHcCCCCCC-cCCCCCccccc
Q 011309           21 GDFVEAKMLLDCNPCLAKYST------------FGGL---NSPLHFAAAKGHNEIVALLLENGADVNS-RNYCGQVTRAD   84 (489)
Q Consensus        21 G~~~~Vk~LL~~g~~l~~~~~------------~~~g---~TpLh~Aa~~G~~eivk~LLe~Gad~n~-~d~~g~i~~~d   84 (489)
                      |++++|+.||++|.+.+....            .+.+   .+.+|+|+..+..+++++|++.|+++|. +|.        
T Consensus        58 g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~--------  129 (327)
T 1sw6_A           58 EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE--------  129 (327)
T ss_dssp             HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCST--------
T ss_pred             chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCC--------
Confidence            999999999999876543110            0111   2346889999999999999999999999 887        


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309           85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  164 (489)
Q Consensus        85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  164 (489)
                        .|+||||+|+..|+.++|++|++.++.                                 ++.+|..|.||||+|+..
T Consensus       130 --~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---------------------------------~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A          130 --HGNTPLHWLTSIANLELVKHLVKHGSN---------------------------------RLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             --TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTBCCTTCCCHHHHHHHS
T ss_pred             --CCCcHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHh
Confidence              999999999999999999999987654                                 788999999999999999


Q ss_pred             CC---HHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHH----cCCHHHHHHHHHc-----------------
Q 011309          165 GY---FDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAAC----GGNLKCCQVLLSR-----------------  219 (489)
Q Consensus       165 g~---~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~----~g~~eivk~LL~~-----------------  219 (489)
                      |+   .++++.|++.+ ++++..+..          |+||||+|+.    .|+.+++++|++.                 
T Consensus       175 g~~~~~~~~~~ll~~~~~~~~~~d~~----------g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~  244 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLYPCLILEDSM----------NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGT  244 (327)
T ss_dssp             SHHHHTTCHHHHHHHHGGGGGEECTT----------CCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-
T ss_pred             cccccHHHHHHHHHhhhccccCCCCC----------CCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhh
Confidence            98   78888888887 788888876          9999999999    9999999999987                 


Q ss_pred             ---CCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCCCCCCCCCCCCCCCcchhhHH
Q 011309          220 ---GASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLSLPLLS  272 (489)
Q Consensus       220 ---Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~~~~~~~~~~~~~~~~pl~~  272 (489)
                         |++++.+|..|+||||+|+.      +++|... +++..    +..+.+||+.
T Consensus       245 ~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-~~n~~----d~~G~TpLh~  289 (327)
T 1sw6_A          245 NEKESKPNDKNGERKDSILENLD------LKWIIAN-MLNAQ----DSNGDTCLNI  289 (327)
T ss_dssp             ---------------CHHHHHCS------HHHHHHH-TTTCC----CTTSCCHHHH
T ss_pred             hcccCCcccccccCCChhHHHHH------HHHHHHh-CCCCC----CCCCCCHHHH
Confidence               89999999999999999985      5555444 44443    4567788654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=4.4e-28  Score=233.17  Aligned_cols=154  Identities=22%  Similarity=0.247  Sum_probs=113.7

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      |.||||.|++.|+.++++.||++|++++.. .          .|.||||+|+..|+.++|++|++.+.+           
T Consensus         5 g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~----------~~~t~L~~A~~~g~~~~v~~Ll~~g~~-----------   62 (239)
T 1ycs_B            5 GQVSLPPGKRTNLRKTGSERIAHGMRVKFN-P----------LPLALLLDSSLEGEFDLVQRIIYEVDD-----------   62 (239)
T ss_dssp             -------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-----------
T ss_pred             ccccCchhhhhhhHHHHHHHhccCCCcccC-c----------hhhHHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            589999999999999999999999999865 3          799999999999999999999976543           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                            +|.+|..|.||||+|+..|+.++|++|+++|++++..|..          |+||||+|
T Consensus        63 ----------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~tpL~~A  110 (239)
T 1ycs_B           63 ----------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSD----------GWTPLHCA  110 (239)
T ss_dssp             ----------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTT----------CCCHHHHH
T ss_pred             ----------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHH
Confidence                                  7888999999999999999999999999999999999976          99999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCC-cHHHHH--HHcCcHhHHHHhcCC
Q 011309          205 ACGGNLKCCQVLLSRGASRMSLNCNGW-LPLDVA--RMWGRHWLEPLLAPS  252 (489)
Q Consensus       205 a~~g~~eivk~LL~~Gadvn~~d~~G~-TpL~~A--~~~g~~~i~~LL~~~  252 (489)
                      +..|+.++|++|+++|++++.+|..|. ||||+|  +..|+.+++++|...
T Consensus       111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B          111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            999999999999999999999998887 999999  788999998888664

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.6e-27  Score=232.08  Aligned_cols=156  Identities=28%  Similarity=0.312  Sum_probs=144.7

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHH-----HhCcHHHHHHHHHcCCCCCCcCCCCCcccc
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAA-----AKGHNEIVALLLENGADVNSRNYCGQVTRA   83 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa-----~~G~~eivk~LLe~Gad~n~~d~~g~i~~~   83 (489)
                      ..||||+|+..|+.++|++|++.|+ +++..+..+  .||||+|+     ..|+.+++++|++.|++++..+.       
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g--~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~-------  181 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAG--YSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQ-------  181 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTS--CCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTT-------
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCC--CCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCC-------
Confidence            4579999999999999999999998 777766655  99999999     77999999999999999998887       


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309           84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  163 (489)
Q Consensus        84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~  163 (489)
                         .|+||||+|+..|+.++|++|++.+.+                                 +|.+|..|.||||+|+.
T Consensus       182 ---~g~tpLh~A~~~g~~~~v~~Ll~~gad---------------------------------~n~~d~~G~TpLh~A~~  225 (276)
T 4hbd_A          182 ---AGQTALMLAVSHGRVDVVKALLACEAD---------------------------------VNVQDDDGSTALMCACE  225 (276)
T ss_dssp             ---TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHH
T ss_pred             ---CCCCHHHHHHHcCCHHHHHHHHhCCCC---------------------------------CCCCCCCCCCHHHHHHH
Confidence               899999999999999999999987654                                 78899999999999999


Q ss_pred             cCCHHHHHHHHh-cCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309          164 NGYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       164 ~g~~e~v~~LL~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  220 (489)
                      .|+.++|++|++ .|++++..|..          |.||||+|+..|+.+++++|++++
T Consensus       226 ~g~~~iv~~Ll~~~gad~~~~d~~----------g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          226 HGHKEIAGLLLAVPSCDISLTDRD----------GSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             HTCHHHHHHHHTSTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHhcCCCCCcCcCCC----------CCCHHHHHHHcCCHHHHHHHHhcc
Confidence            999999999999 89999999976          999999999999999999999874

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.9e-29  Score=239.10  Aligned_cols=164  Identities=22%  Similarity=0.106  Sum_probs=139.4

Q ss_pred             HHHHhhcCCCCcccCC-CCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHH
Q 011309           26 AKMLLDCNPCLAKYST-FGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI  104 (489)
Q Consensus        26 Vk~LL~~g~~l~~~~~-~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~v  104 (489)
                      |+.||++|++.+.... ...+.||||+|+..|+.++|++|+++|++++..|.          .|+||||+|+..|+.++|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~----------~g~tpLh~A~~~g~~~~v   70 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE----------EGITALHNAICGANYSIV   70 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCT----------TSCCHHHHHHHTTCHHHH
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCC----------CCCCHHHHHHHcCCHHHH
Confidence            5778999888764433 33458999999999999999999999999999998          999999999999999999


Q ss_pred             HHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCccccc
Q 011309          105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVT  184 (489)
Q Consensus       105 k~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~  184 (489)
                      ++|++.+.+                                 +|.+|..|.||||+|+..|+.++|++|+++|++++..+
T Consensus        71 ~~Ll~~ga~---------------------------------~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           71 DFLITAGAN---------------------------------VNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             HHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHCCCC---------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            999987544                                 78889999999999999999999999999999999986


Q ss_pred             ccCCCccccCCCCCcHHHHH--HHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Q 011309          185 FHYGTSMDLIGAGSTPLHFA--ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWG  241 (489)
Q Consensus       185 ~~~~~~~~~~~~G~TpLh~A--a~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g  241 (489)
                      ..         .|.||||+|  +..|+.+++++|+++|++++.+|..|.||++.++...
T Consensus       118 ~~---------~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~  167 (229)
T 2vge_A          118 LS---------DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEF  167 (229)
T ss_dssp             SS---------TTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSS
T ss_pred             CC---------CCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcc
Confidence            42         299999999  9999999999999999999999999999998655444

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=1.6e-27  Score=213.88  Aligned_cols=140  Identities=25%  Similarity=0.251  Sum_probs=115.2

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      .|.||||+|+..|+.++|++|+++|++++..|.          .|+||||+|+ .|+.+++++|++.+..          
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~-~~~~~~v~~Ll~~g~~----------   69 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNS----------YGRRPIQVMM-MGSARVAELLLLHGAE----------   69 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----------SSCCTTTSSC-TTCHHHHHHHHTTTCC----------
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCC----------CCCCHHHHHH-cCCHHHHHHHHHcCCC----------
Confidence            348999999999999999999999999999998          8999999985 9999999999976543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCcc-HHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGIT-ALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH  202 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~T-pLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh  202 (489)
                                             ++.+|..|.| |||+|+..|+.++|++|+++|++++..+..          |.||||
T Consensus        70 -----------------------~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~----------g~tpl~  116 (156)
T 1bi7_B           70 -----------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW----------GRLPVD  116 (156)
T ss_dssp             -----------------------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT----------CCCHHH
T ss_pred             -----------------------CCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCC----------CCCHHH
Confidence                                   7888999999 999999999999999999999999999876          999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 011309          203 FAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVA  237 (489)
Q Consensus       203 ~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A  237 (489)
                      +|+..|+.+++++|+++|++++.+|..|.||.+-+
T Consensus       117 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          117 LAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP  151 (156)
T ss_dssp             HHHHHTCHHHHHHHSSCC-----------------
T ss_pred             HHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence            99999999999999999999999999999998754

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.94  E-value=7.4e-27  Score=204.61  Aligned_cols=134  Identities=25%  Similarity=0.313  Sum_probs=122.9

Q ss_pred             CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccC
Q 011309           33 NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV  112 (489)
Q Consensus        33 g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~  112 (489)
                      +++++..+..+  .||||+|+..|+.++|++|+++|++++.+|.          .|+||||+|+. |+.+++++|++.+.
T Consensus         2 ~~~~~~~~~~g--~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~-~~~~~v~~Ll~~g~   68 (136)
T 1d9s_A            2 SPGIHMLGGSS--DAGLATAAARGQVETVRQLLEAGADPNALNR----------FGRRPIQVMMM-GSAQVAELLLLHGA   68 (136)
T ss_dssp             CCCCSCCCCCC--SCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TCCTTTTTSTT-SCHHHHHHHHHHTC
T ss_pred             CCCccCCCCCC--ccHHHHHHHcCCHHHHHHHHHcCCCcCCcCC----------CCCCHHHHHHc-CCHHHHHHHHHCCC
Confidence            34555555554  9999999999999999999999999999998          99999999999 99999999998754


Q ss_pred             CCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCC-CccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcc
Q 011309          113 PSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG-GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM  191 (489)
Q Consensus       113 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~-G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~  191 (489)
                      .                                 ++.+|.. |.||||+|+..|+.+++++|+++|++++..+..     
T Consensus        69 ~---------------------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~-----  110 (136)
T 1d9s_A           69 E---------------------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAW-----  110 (136)
T ss_dssp             C---------------------------------SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSS-----
T ss_pred             C---------------------------------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCC-----
Confidence            3                                 7788888 999999999999999999999999999999876     


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       192 ~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                           |.||||+|+..|+.+++++|+++|||
T Consensus       111 -----g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          111 -----GRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             -----SSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             -----CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                 99999999999999999999999986

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=4.2e-27  Score=218.70  Aligned_cols=152  Identities=13%  Similarity=0.069  Sum_probs=133.0

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcC-CCCCcccccCCCCChHHHHHHHcCCH----HHHHHHHHccCCCCCcccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGRTALHFAAVNGHV----RCIRLVVADFVPSVPFEVM  120 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d-~~g~i~~~d~~~G~TpLh~Aa~~g~~----~~vk~LL~~~~~~~~~~~~  120 (489)
                      +++|+.|++.|+.+.++.|++.+.  +..+ .          .|+||||+|+.+|+.    +++++|++.|++       
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~----------~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-------   67 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGY--EDKESV----------LKSNILYDVLRNNNDEARYKISMFLINKGAD-------   67 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSS--SCHHHH----------HTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-------
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCc--cccccc----------CCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-------
Confidence            678999999999999999988764  4444 4          689999999999875    489999987655       


Q ss_pred             ccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC------HHHHHHHHhcCCCcccccccCCCccccC
Q 011309          121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY------FDCVQLLLDLHANVSAVTFHYGTSMDLI  194 (489)
Q Consensus       121 ~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~------~e~v~~LL~~Gadvn~~~~~~~~~~~~~  194 (489)
                                                +|.+|..|.||||+|+..|+      .++|++|+++|++++.+|..        
T Consensus        68 --------------------------vn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~--------  113 (186)
T 3t8k_A           68 --------------------------IKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKP--------  113 (186)
T ss_dssp             --------------------------SSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGG--------
T ss_pred             --------------------------CCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCC--------
Confidence                                      88889999999999999887      68899999999999999987        


Q ss_pred             CCCC-cHHHHHHHcC-----CHHHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          195 GAGS-TPLHFAACGG-----NLKCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       195 ~~G~-TpLh~Aa~~g-----~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                        |. ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|++.|+.+++++|...
T Consensus       114 --g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          114 --YKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             --GTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             --cCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence              88 9999999954     4679999999 9999999999999999999999999999988653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=3.3e-27  Score=219.44  Aligned_cols=160  Identities=13%  Similarity=0.028  Sum_probs=139.9

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcH----HHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~----eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      ++|+.||+.|+++.++.++..+.+.  .+. ..|+||||+|+..|+.    +++++||++|+++|.+|.          .
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~-~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~----------~   74 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKGYED--KES-VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTK----------E   74 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHSSSC--HHH-HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCT----------T
T ss_pred             cHHHHHHHcCCHHHHHHHHhcCccc--ccc-cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCC----------C
Confidence            5799999999999999999987542  221 2248999999999975    599999999999999998          9


Q ss_pred             CChHHHHHHHcCC------HHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCc-cHHHH
Q 011309           88 GRTALHFAAVNGH------VRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGI-TALHM  160 (489)
Q Consensus        88 G~TpLh~Aa~~g~------~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~-TpLh~  160 (489)
                      |+||||+|+..|+      .+++++|++.|++                                 +|.+|..|. ||||+
T Consensus        75 g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad---------------------------------in~~d~~g~ttpLh~  121 (186)
T 3t8k_A           75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---------------------------------ITALYKPYKIVVFKN  121 (186)
T ss_dssp             CCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC---------------------------------SSSCBGGGTBCTTGG
T ss_pred             CCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC---------------------------------CCccCCCcCchHHHH
Confidence            9999999999997      6789999988765                                 899999999 99999


Q ss_pred             HHHcC-----CHHHHHHHHh-cCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309          161 AALNG-----YFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  227 (489)
Q Consensus       161 Aa~~g-----~~e~v~~LL~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d  227 (489)
                      |+..+     +.+++++|++ +|++++.+|..          |.||||+|+..|+.++|++|+++..+.+.++
T Consensus       122 A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~----------G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKW----------GLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             GGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTT----------SCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             HHHcCCChhhHHHHHHHHHHhcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            99954     4579999999 99999999987          9999999999999999999998766555554

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.1e-25  Score=189.56  Aligned_cols=125  Identities=47%  Similarity=0.710  Sum_probs=117.8

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      |+||||+|+..|+.+++++|+++|++++..+.          .|.||||+|+..|+.+++++|++.+..           
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~-----------   60 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKLLLEAGAD-----------   60 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCT----------TSCCHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCC----------CCCcHHHHHHHcCcHHHHHHHHHcCCC-----------
Confidence            58999999999999999999999999999988          899999999999999999999986543           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                            ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|
T Consensus        61 ----------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A  108 (126)
T 1n0r_A           61 ----------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLA  108 (126)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHH
T ss_pred             ----------------------CcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCC----------CCCHHHHH
Confidence                                  6778889999999999999999999999999999998876          99999999


Q ss_pred             HHcCCHHHHHHHHHcCCC
Q 011309          205 ACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       205 a~~g~~eivk~LL~~Gad  222 (489)
                      +..|+.+++++|+++|||
T Consensus       109 ~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          109 ARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHHHHHHHTCC
T ss_pred             HHcCcHHHHHHHHHcCCC
Confidence            999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=2e-27  Score=244.70  Aligned_cols=152  Identities=16%  Similarity=0.023  Sum_probs=113.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCccc-CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCC---CcCCCCCcccccCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADVN---SRNYCGQVTRADYL   86 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~-~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n---~~d~~g~i~~~d~~   86 (489)
                      .||||.|++.|++++|++|++.|+..... ..+..|.||||+|+..|+.++|++|+++|++++   ..+.          
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~----------  162 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE----------  162 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH----------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC----------
Confidence            58999999999999999999998732111 111234899999999999999999999998743   3332          


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcc--ccCCCccHHHHHH-H
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK--AADGGITALHMAA-L  163 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~--~d~~G~TpLh~Aa-~  163 (489)
                      + .||||+|+..|+.++|++|++.+..                                 ++.  .|..|.||||+|+ .
T Consensus       163 ~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---------------------------------~~~~~~d~~g~TpL~~Aa~~  208 (376)
T 2aja_A          163 N-YHAFRLAAENGHLHVLNRLCELAPT---------------------------------EATAMIQAENYYAFRWAAVG  208 (376)
T ss_dssp             H-HHHHHHHHHTTCHHHHHHHHHSCGG---------------------------------GHHHHHHHHHHHHHHHHHST
T ss_pred             C-CCHHHHHHHCCCHHHHHHHHHcCCc---------------------------------cchhccCCCCCCHHHHHHHH
Confidence            3 8999999999999999999987543                                 222  4455677777777 7


Q ss_pred             cCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309          164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  223 (489)
Q Consensus       164 ~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv  223 (489)
                      +|+.++|++|+++|++                 |.||||+|+..|+.+++++|+++|+++
T Consensus       209 ~G~~eiv~~Ll~~ga~-----------------~~taL~~Aa~~g~~evv~lL~~~ga~~  251 (376)
T 2aja_A          209 RGHHNVINFLLDCPVM-----------------LAYAEIHEFEYGEKYVNPFIARHVNRL  251 (376)
T ss_dssp             TCCHHHHHHHTTSHHH-----------------HHHHHHCTTTTTTTTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHhCCCc-----------------cchHHHHHHHCCCHHHHHHHHhcCccc
Confidence            7777777777775531                 557777777777777777777766544

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.93  E-value=3.1e-25  Score=194.24  Aligned_cols=124  Identities=31%  Similarity=0.444  Sum_probs=116.3

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      .+.||||+|+..|+.++|++|+++|++++..|.          .|+||||+|+..|+.+++++|++.+..          
T Consensus        13 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------   72 (136)
T 2jab_A           13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDE----------YGLTPLYLATAHGHLEIVEVLLKNGAD----------   72 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred             cccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC----------
Confidence            348999999999999999999999999999998          899999999999999999999987543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++..|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        73 -----------------------~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~----------g~tpl~~  119 (136)
T 2jab_A           73 -----------------------VNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKF----------GKTAFDI  119 (136)
T ss_dssp             -----------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHH
T ss_pred             -----------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCC----------CCCHHHH
Confidence                                   7788999999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcC
Q 011309          204 AACGGNLKCCQVLLSRG  220 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~G  220 (489)
                      |+..|+.+++++|+++|
T Consensus       120 A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          120 SIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHTTCHHHHHHHHHC-
T ss_pred             HHHCCCHHHHHHHHHcC
Confidence            99999999999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=1.2e-25  Score=196.85  Aligned_cols=132  Identities=23%  Similarity=0.224  Sum_probs=121.7

Q ss_pred             CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhh
Q 011309           68 GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV  147 (489)
Q Consensus        68 Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i  147 (489)
                      +++++..+.          .|.||||+|+..|+.+++++|++.+..                                 +
T Consensus         2 ~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------------------------~   38 (136)
T 1d9s_A            2 SPGIHMLGG----------SSDAGLATAAARGQVETVRQLLEAGAD---------------------------------P   38 (136)
T ss_dssp             CCCCSCCCC----------CCSCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------T
T ss_pred             CCCccCCCC----------CCccHHHHHHHcCCHHHHHHHHHcCCC---------------------------------c
Confidence            478888887          999999999999999999999987543                                 7


Q ss_pred             ccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309          148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  227 (489)
Q Consensus       148 n~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d  227 (489)
                      +.+|..|.||||+|+. |+.+++++|+++|++++..+..         .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus        39 ~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~---------~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d  108 (136)
T 1d9s_A           39 NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPA---------TLTRPVHDAAREGFLDTLVVLHRAGARLDVCD  108 (136)
T ss_dssp             TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTT---------TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCS
T ss_pred             CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCC---------CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            7888999999999999 9999999999999999998853         27999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          228 CNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       228 ~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      ..|+||||+|+..++.+++++|.+.
T Consensus       109 ~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A          109 AWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             SSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999888654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=2.3e-25  Score=199.65  Aligned_cols=140  Identities=19%  Similarity=0.227  Sum_probs=114.3

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      ...++||+|++.|++++|++|+++|++++..+..+  +||||+|+ .|+.++|++|+++|++++.+|.          .|
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g--~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~----------~g   77 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYG--RRPIQVMM-MGSARVAELLLLHGAEPNCADP----------AT   77 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSS--CCTTTSSC-TTCHHHHHHHHTTTCCCCCCCT----------TT
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CCHHHHHH-cCCHHHHHHHHHcCCCCCCcCC----------CC
Confidence            34689999999999999999999999988877655  99999996 9999999999999999999998          89


Q ss_pred             Ch-HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           89 RT-ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        89 ~T-pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      +| |||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..|+.
T Consensus        78 ~ttpL~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~  124 (156)
T 1bi7_B           78 LTRPVHDAAREGFLDTLVVLHRAGAR---------------------------------LDVRDAWGRLPVDLAEELGHR  124 (156)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------SSCCCTTCCCHHHHHHHHTCH
T ss_pred             CcHHHHHHHHCCCHHHHHHHHHcCCC---------------------------------CcccCCCCCCHHHHHHHhCHH
Confidence            99 99999999999999999987544                                 788899999999999999999


Q ss_pred             HHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          168 DCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       168 e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                      +++++|+++|++++..+..          |.||.+.+
T Consensus       125 ~~v~~Ll~~ga~~~~~~~~----------g~t~~~~~  151 (156)
T 1bi7_B          125 DVARYLRAAAGGTRGSNHA----------RIDAAEGP  151 (156)
T ss_dssp             HHHHHHSSCC---------------------------
T ss_pred             HHHHHHHHcCCCCCccCcC----------cCcccccC
Confidence            9999999999999999876          78877643

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=2e-25  Score=195.28  Aligned_cols=133  Identities=31%  Similarity=0.396  Sum_probs=116.9

Q ss_pred             CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhh
Q 011309           68 GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV  147 (489)
Q Consensus        68 Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i  147 (489)
                      |+|+ .+|.          .|+||||+|+..|+.+++++|++.+..                                 +
T Consensus         1 G~d~-~~~~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~   36 (137)
T 3c5r_A            1 GIDP-FTNH----------RGETLLHIASIKGDIPSVEYLLQNGSD---------------------------------P   36 (137)
T ss_dssp             ---C-CCCT----------TCCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------S
T ss_pred             CCCC-CcCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------C
Confidence            5666 5555          899999999999999999999986543                                 6


Q ss_pred             ccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccC
Q 011309          148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLN  227 (489)
Q Consensus       148 n~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d  227 (489)
                      +.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|
T Consensus        37 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~  106 (137)
T 3c5r_A           37 NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQ----------NDSPLHDAAKNGHVDIVKLLLSYGASRNAVN  106 (137)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGG----------GCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            788899999999999999999999999999999999877          9999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCcHhHHHHhcCCCC
Q 011309          228 CNGWLPLDVARMWGRHWLEPLLAPSSD  254 (489)
Q Consensus       228 ~~G~TpL~~A~~~g~~~i~~LL~~~~~  254 (489)
                      .+|+||||+|+..+..+++.+|.+...
T Consensus       107 ~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A          107 IFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CCCCCHHHHHhhccHHHHHhhcccccc
Confidence            999999999999999999888876543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.92  E-value=1.3e-24  Score=190.34  Aligned_cols=124  Identities=31%  Similarity=0.344  Sum_probs=116.6

Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  165 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g  165 (489)
                      ..|.||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~   58 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGAD---------------------------------VNAKDEYGLTPLYLATAHG   58 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHHT
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHcC
Confidence            3788999999999999999999987543                                 7788899999999999999


Q ss_pred             CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309          166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      +.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus        59 ~~~~v~~Ll~~g~~~~~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~  128 (136)
T 2jab_A           59 HLEIVEVLLKNGADVNAVDAI----------GFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL  128 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999998876          9999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC
Q 011309          246 EPLLAPS  252 (489)
Q Consensus       246 ~~LL~~~  252 (489)
                      +++|.+.
T Consensus       129 ~~~Ll~~  135 (136)
T 2jab_A          129 AEILQKL  135 (136)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHc
Confidence            9998754

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=7.1e-26  Score=208.64  Aligned_cols=165  Identities=26%  Similarity=0.302  Sum_probs=136.2

Q ss_pred             HHHcCCHHHHHHHhhcCCCCccc---------CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309           17 AARDGDFVEAKMLLDCNPCLAKY---------STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus        17 Aa~~G~~~~Vk~LL~~g~~l~~~---------~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      |++.|..+.+++|++.+......         ..+..|.||||+|+..|+.+++++||+ |+++|.+|.          .
T Consensus         7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----------~   75 (183)
T 3deo_A            7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDE----------N   75 (183)
T ss_dssp             EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCT----------T
T ss_pred             HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCC----------C
Confidence            45566666777777553322111         011234899999999999999999999 999999998          8


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCC
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGY  166 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~  166 (489)
                      |+||||+|+..|+.+++++|++.+..                                 +|.++ ..|.||||+|+..|+
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~~~~~g~tpL~~A~~~~~  122 (183)
T 3deo_A           76 GRTALLFVAGLGSDKCVRLLAEAGAD---------------------------------LDHRDMRGGLTALHMAAGYVR  122 (183)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCSSSSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCcCCCCCCCCHHHHHHhcCc
Confidence            99999999999999999999987644                                 66677 789999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      .+++++|+++|++++..+..          |.||||+|+..++.                 ..+.+||++|+..|+.+++
T Consensus       123 ~~~v~~Ll~~ga~~~~~d~~----------g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~~~i~  175 (183)
T 3deo_A          123 PEVVEALVELGADIEVEDER----------GLTALELAREILKT-----------------TPKGNPMQFGRRIGLEKVI  175 (183)
T ss_dssp             HHHHHHHHHHTCCTTCCCTT----------SCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcCCCCC----------CCCHHHHHHHhccC-----------------cccccHHHHHHHcCHHHHH
Confidence            99999999999999999876          99999999874322                 4578999999999999999


Q ss_pred             HHhcCC
Q 011309          247 PLLAPS  252 (489)
Q Consensus       247 ~LL~~~  252 (489)
                      ++|...
T Consensus       176 ~~L~~~  181 (183)
T 3deo_A          176 NVLEGQ  181 (183)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            999654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.91  E-value=1.5e-24  Score=216.69  Aligned_cols=139  Identities=27%  Similarity=0.285  Sum_probs=122.3

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCC------cCCCCCcccccCCCCChHHHHHHHc---CCHHHHHHHHHccCCCCC
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNS------RNYCGQVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVP  116 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~------~d~~g~i~~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~~~  116 (489)
                      .++|+.|+..|+.+.|+.|++.|++++.      .+.          .|+||||+|+..   |+.+++++|++.+.+   
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~----------~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---  218 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQA----------PEELVLHLAVKVANQASLPLVDFIIQNGGH---  218 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCS----------CEECHHHHHHHTCCTTTHHHHHHHHHHSSC---
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCC----------CCccHHHHHHHhcccCcHHHHHHHHhcCCC---
Confidence            4779999999999999999999999998      465          899999999997   899999999987654   


Q ss_pred             ccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCC
Q 011309          117 FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA  196 (489)
Q Consensus       117 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~  196 (489)
                                                    +|.+|..|.||||+|+..|+.++|++|+++|++++..|..          
T Consensus       219 ------------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~----------  258 (301)
T 2b0o_E          219 ------------------------------LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA----------  258 (301)
T ss_dssp             ------------------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTT----------
T ss_pred             ------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------
Confidence                                          7888999999999999999999999999999999999976          


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcH
Q 011309          197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  243 (489)
Q Consensus       197 G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~  243 (489)
                      |.||||+|+..|+.+++++|+++|++      .|+||||+|+.+|+.
T Consensus       259 G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          259 GETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999999999999999987      589999999999874

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=9.9e-24  Score=180.13  Aligned_cols=124  Identities=40%  Similarity=0.558  Sum_probs=115.5

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      +|+||||+|+..|+.+++++|++.+..                                 ++..+..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~   47 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---------------------------------VNAKDKNGRTPLHLAARNGH   47 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHHTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---------------------------------CCCcCCCCCcHHHHHHHcCc
Confidence            489999999999999999999976543                                 67778899999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      .+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        48 ~~~~~~Ll~~g~~~~~~~~~----------g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~  117 (126)
T 1n0r_A           48 LEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVV  117 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCcccCCC----------CCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999998876          99999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q 011309          247 PLLAPSS  253 (489)
Q Consensus       247 ~LL~~~~  253 (489)
                      ++|.+.+
T Consensus       118 ~~Ll~~G  124 (126)
T 1n0r_A          118 KLLLEAG  124 (126)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHcC
Confidence            8887543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.90  E-value=2e-24  Score=204.62  Aligned_cols=133  Identities=29%  Similarity=0.350  Sum_probs=95.5

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHc-cCCCCCcccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVAD-FVPSVPFEVMNTQI  124 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~-~~~~~~~~~~~l~~  124 (489)
                      .||||+|+..|+.++|++||+.|++++.+|.          .|+||||+|+..|+.++|++|++. +..           
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-----------  132 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLDNRVGVNGLDK----------AGSTALYWACHGGHKDIVEMLFTQPNIE-----------  132 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHTTSTTCC-----------
T ss_pred             ccccccccccCcHHHHHHHHhCCCCccccCC----------CCCCHHHHHHHcCCHHHHHHHHcCCCCC-----------
Confidence            6888888888888888888888888888887          788888888888888888888864 322           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                            ++.+|..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+|
T Consensus       133 ----------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A  180 (222)
T 3ehr_A          133 ----------------------LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE----------KKLAFDMA  180 (222)
T ss_dssp             ----------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTT----------SCCHHHHC
T ss_pred             ----------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC----------CCCHHHHh
Confidence                                  6777788888888888888888888888888888887766          88888888


Q ss_pred             HHcCCHHHHHHHHHcCCCCCccCCCCC
Q 011309          205 ACGGNLKCCQVLLSRGASRMSLNCNGW  231 (489)
Q Consensus       205 a~~g~~eivk~LL~~Gadvn~~d~~G~  231 (489)
                      +..|+.++++.|++.|++.+..|.+|+
T Consensus       181 ~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          181 TNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             CSHHHHHHHC-----------------
T ss_pred             cchhHHHHHHHHhccchhhhccchhhh
Confidence            888888888888888888777766554

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.90  E-value=2.6e-24  Score=188.20  Aligned_cols=126  Identities=31%  Similarity=0.380  Sum_probs=112.5

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      .|+||||+|+..|+.+++++|+++|++++.+|.          .|+||||+|+..|+.+++++|++.+..          
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------   68 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH----------AGWTPLHEACNHGHLKVVELLLQHKAL----------   68 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCc----------
Confidence            449999999999999999999999999999998          899999999999999999999986543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+
T Consensus        69 -----------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~tpl~~  115 (137)
T 3c5r_A           69 -----------------------VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF----------GLRPVDY  115 (137)
T ss_dssp             -----------------------TTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCGGGG
T ss_pred             -----------------------ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC----------CCCHHHH
Confidence                                   7788889999999999999999999999999999999877          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCC
Q 011309          204 AACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gad  222 (489)
                      |+..+..+++++|.+.+..
T Consensus       116 A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A          116 TDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CCCHHHHHHHSCC------
T ss_pred             HhhccHHHHHhhccccccC
Confidence            9999999999888776543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.90  E-value=1.9e-25  Score=229.86  Aligned_cols=174  Identities=16%  Similarity=0.092  Sum_probs=141.3

Q ss_pred             HHHHHHH-cCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCC---CcCCCCCcccccCCCC
Q 011309           13 RLVSAAR-DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN---SRNYCGQVTRADYLSG   88 (489)
Q Consensus        13 ~L~~Aa~-~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n---~~d~~g~i~~~d~~~G   88 (489)
                      .|+.|.. .++.+.+++|+++|.+.         +||||+|++.|+.++|++|+++|+...   ..+.          .|
T Consensus        68 ~~~~a~~~~~~~~~~~~l~~~g~~~---------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~----------~~  128 (376)
T 2aja_A           68 CLYYAHYNRNAKQLWSDAHKKGIKS---------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------EN  128 (376)
T ss_dssp             HHHHHHTTTTCTTHHHHHHHHTCCH---------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----------HH
T ss_pred             HHHHHHhcCCCHHHHHHHHHcCCCc---------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhcc----------CC
Confidence            5666666 57888888888877542         699999999999999999999998332   2333          67


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .||||+|+.+|+.++|++|++.+.+..                            ...++..+   .||||+|+..|+.+
T Consensus       129 ~tpL~~Aa~~G~~eiv~~Ll~~gad~~----------------------------~~~i~~~~---~TpLh~Aa~~G~~e  177 (376)
T 2aja_A          129 YQAFRLAAENGHLHVLNRLCELAPTEI----------------------------MAMIQAEN---YHAFRLAAENGHLH  177 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCTTTH----------------------------HHHHSHHH---HHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCcc----------------------------ccccCCCC---CCHHHHHHHCCCHH
Confidence            899999999999999999998753200                            00122222   89999999999999


Q ss_pred             HHHHHHhcCCCccc--ccccCCCccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309          169 CVQLLLDLHANVSA--VTFHYGTSMDLIGAGSTPLHFAA-CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       169 ~v~~LL~~Gadvn~--~~~~~~~~~~~~~~G~TpLh~Aa-~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      +|++|+++|++++.  .+..          |.||||+|+ ..|+.++|++|+++|++       |+||||+|+..|+.++
T Consensus       178 iv~~Ll~~ga~~~~~~~d~~----------g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~ev  240 (376)
T 2aja_A          178 VLNRLCELAPTEATAMIQAE----------NYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYV  240 (376)
T ss_dssp             HHHHHHHSCGGGHHHHHHHH----------HHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTH
T ss_pred             HHHHHHHcCCccchhccCCC----------CCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHH
Confidence            99999999999887  7766          899999999 99999999999998753       8999999999999999


Q ss_pred             HHHhcCCC
Q 011309          246 EPLLAPSS  253 (489)
Q Consensus       246 ~~LL~~~~  253 (489)
                      +++|...+
T Consensus       241 v~lL~~~g  248 (376)
T 2aja_A          241 NPFIARHV  248 (376)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhcC
Confidence            99997653

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.90  E-value=8.5e-24  Score=204.19  Aligned_cols=137  Identities=30%  Similarity=0.352  Sum_probs=124.3

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      |.||||+|+..|+.++|++||+ |+++|.+|.          .|+||||+|+..|+.++|++|++.+.+           
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~----------~g~t~L~~A~~~g~~~~v~~Ll~~ga~-----------  102 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLE-DRDVDAVDE----------NGRTALLFVAGLGSDKCVRLLAEAGAD-----------  102 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCT----------TSCBHHHHHHHHTCHHHHHHHHHTTCC-----------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCC----------CCCCHHHHHHHCCCHHHHHHHHHcCCC-----------
Confidence            4899999999999999999999 999999998          899999999999999999999987654           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhcccc-CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAA-DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d-~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                            +|.++ ..|.||||+|+..|+.++|++|+++|++++..+..          |.||||+
T Consensus       103 ----------------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------g~t~l~~  150 (244)
T 3ui2_A          103 ----------------------LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDER----------GLTALEL  150 (244)
T ss_dssp             ----------------------TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHH
T ss_pred             ----------------------CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCcHHHH
Confidence                                  67777 78999999999999999999999999999999876          9999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          204 AACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      |+..+                 .+..+.|||++|+..|+.+++++|...
T Consensus       151 A~~~~-----------------~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          151 AREIL-----------------KTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHH-----------------TTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH-----------------hccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            98632                 235789999999999999999998763

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=209.27  Aligned_cols=142  Identities=23%  Similarity=0.304  Sum_probs=120.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCccc----CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCCCccc
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQVTR   82 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~----~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g~i~~   82 (489)
                      ..++|+.|+..|+++.|+.|++.|++++..    ..+..|+||||+|+..   |+.++|++||++|+++|.+|.      
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~------  224 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAA------  224 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCT------
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCC------
Confidence            357899999999999999999999998763    1233459999999997   899999999999999999998      


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHH
Q 011309           83 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAA  162 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa  162 (489)
                          .|+||||+|+..|+.++|++|++.+++                                 ++.+|..|.||||+|+
T Consensus       225 ----~G~TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------~~~~d~~G~TpL~~A~  267 (301)
T 2b0o_E          225 ----DGNTALHYAALYNQPDCLKLLLKGRAL---------------------------------VGTVNEAGETALDIAR  267 (301)
T ss_dssp             ----TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------CSCCCTTSCCHHHHHH
T ss_pred             ----CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHH
Confidence                999999999999999999999987654                                 7888999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCH
Q 011309          163 LNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  210 (489)
Q Consensus       163 ~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~  210 (489)
                      ..|+.+++++|+++|++      .          |.||||+|+.+|+.
T Consensus       268 ~~~~~~iv~~Ll~~ga~------~----------g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          268 KKHHKECEELLEQAQAG------T----------FAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHTCHHHHHHHHHHHHH------T----------TSSCCC--------
T ss_pred             HcCCHHHHHHHHHhcCC------C----------CCChhHHHHhcCCc
Confidence            99999999999999876      2          88999999998863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.89  E-value=9.2e-23  Score=175.10  Aligned_cols=117  Identities=28%  Similarity=0.400  Sum_probs=106.2

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..|+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~---------------------------------~~~~~~~g~t~L~~A~~~~~   52 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQ   52 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTSCCTTSSCHHHHHHHTTC
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCC---------------------------------cCccCCCCCcHHHHHHHcCC
Confidence            788999999999999999999986543                                 77888999999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      .+++++|+++|++++..+..          |+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|.   ...+.
T Consensus        53 ~~~v~~Ll~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~  119 (123)
T 3aaa_C           53 LEILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD---NQAIK  119 (123)
T ss_dssp             HHHHHHHHTTTCCTTCCCTT----------SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC---CHHHH
T ss_pred             HHHHHHHHHcCCCCCcCCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC---CHHHH
Confidence            99999999999999999876          999999999999999999999999999999999999999994   44444


Q ss_pred             HHh
Q 011309          247 PLL  249 (489)
Q Consensus       247 ~LL  249 (489)
                      ++|
T Consensus       120 ~ll  122 (123)
T 3aaa_C          120 ALL  122 (123)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=5.7e-23  Score=198.40  Aligned_cols=139  Identities=27%  Similarity=0.278  Sum_probs=124.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcC-CCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d-~~g~i~~~d~~~G~   89 (489)
                      .||||.|++.|+.++|++|++ |.+++..+..+  +||||+|+..|+.++|++||++|+++|.++ .          .|+
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g--~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~----------~g~  112 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE-DRDVDAVDENG--RTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------GGL  112 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTS--CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS----------SCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCC--CCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCC----------CCC
Confidence            589999999999999999999 88888877655  999999999999999999999999999988 5          799


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.++|++|++.+.+                                 ++.+|..|.||||+|+..++.  
T Consensus       113 t~L~~A~~~g~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~t~l~~A~~~~~~--  157 (244)
T 3ui2_A          113 TALHMAAGYVRPEVVEALVELGAD---------------------------------IEVEDERGLTALELAREILKT--  157 (244)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHHTT--
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCC---------------------------------CCCCCCCCCcHHHHHHHHHhc--
Confidence            999999999999999999987654                                 788999999999999863221  


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                                     .          .+.||||+|+..|+.+++++|++++.+
T Consensus       158 ---------------~----------~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          158 ---------------T----------PKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             ---------------C----------CCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             ---------------c----------CCCCHHHHHHHcChHHHHHHHHHhccc
Confidence                           1          288999999999999999999997665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=5.9e-23  Score=176.33  Aligned_cols=110  Identities=25%  Similarity=0.339  Sum_probs=102.4

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      |.||||+|+..|+.++|++|+++|++++.+|.          .|+||||+|+..|+.+++++|++.+.+           
T Consensus         7 ~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~----------~g~t~L~~A~~~~~~~~v~~Ll~~g~~-----------   65 (123)
T 3aaa_C            7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------GGRKPLHYAADCGQLEILEFLLLKGAD-----------   65 (123)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCT----------TSSCHHHHHHHTTCHHHHHHHHTTTCC-----------
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcCccCC----------CCCcHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            48999999999999999999999999999998          899999999999999999999976543           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                            ++.+|..|.||||+|+..|+.+++++|+++|++++..+..          |.||||+|
T Consensus        66 ----------------------~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------g~t~l~~A  113 (123)
T 3aaa_C           66 ----------------------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----------GLTAFEAT  113 (123)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHC
T ss_pred             ----------------------CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC----------CCCHHHHh
Confidence                                  7888999999999999999999999999999999999876          99999999


Q ss_pred             HHc
Q 011309          205 ACG  207 (489)
Q Consensus       205 a~~  207 (489)
                      ...
T Consensus       114 ~~~  116 (123)
T 3aaa_C          114 DNQ  116 (123)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            433

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.88  E-value=1.3e-22  Score=186.82  Aligned_cols=136  Identities=28%  Similarity=0.297  Sum_probs=122.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcC-CCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d-~~g~i~~~d~~~G~   89 (489)
                      .||||.|++.|+.++|++|++ +.+++..+..+  +||||+|+..|+.++|++|+++|+++|.++ .          .|+
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g--~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~----------~g~  111 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENG--RTALLFVAGLGSDKCVRLLAEAGADLDHRDMR----------GGL  111 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSS----------SSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCC----------CCC
Confidence            589999999999999999999 88888776655  999999999999999999999999999988 5          899


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.+..                                 ++.+|..|.||||+|+..++.  
T Consensus       112 tpL~~A~~~~~~~~v~~Ll~~ga~---------------------------------~~~~d~~g~tpl~~A~~~~~~--  156 (183)
T 3deo_A          112 TALHMAAGYVRPEVVEALVELGAD---------------------------------IEVEDERGLTALELAREILKT--  156 (183)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCC---------------------------------TTCCCTTSCCHHHHHHHHHHT--
T ss_pred             CHHHHHHhcCcHHHHHHHHHcCCC---------------------------------CcCCCCCCCCHHHHHHHhccC--
Confidence            999999999999999999987544                                 788899999999999975432  


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  219 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  219 (489)
                                     .          .+.++|++|+..|..+++++|.++
T Consensus       157 ---------------~----------~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          157 ---------------T----------PKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             ---------------C----------CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---------------c----------ccccHHHHHHHcCHHHHHHHHHHh
Confidence                           1          278999999999999999999865

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=1.4e-22  Score=191.76  Aligned_cols=126  Identities=29%  Similarity=0.253  Sum_probs=112.1

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.++|++|++.+..                                 ++.+|..|.||||+|+..|+
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~---------------------------------~~~~~~~g~t~L~~A~~~~~  118 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVG---------------------------------VNGLDKAGSTALYWACHGGH  118 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTC
T ss_pred             ccccccccccccCcHHHHHHHHhCCCC---------------------------------ccccCCCCCCHHHHHHHcCC
Confidence            689999999999999999999986543                                 78889999999999999999


Q ss_pred             HHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhH
Q 011309          167 FDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWL  245 (489)
Q Consensus       167 ~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i  245 (489)
                      .++|++|+++ |++++..+..          |.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..++.++
T Consensus       119 ~~~v~~Ll~~~g~~~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~  188 (222)
T 3ehr_A          119 KDIVEMLFTQPNIELNQQNKL----------GDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASL  188 (222)
T ss_dssp             HHHHHHHTTSTTCCCCCCCTT----------SCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHH
T ss_pred             HHHHHHHHcCCCCCccccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHH
Confidence            9999999999 9999999976          9999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCCC
Q 011309          246 EPLLAPSSDA  255 (489)
Q Consensus       246 ~~LL~~~~~~  255 (489)
                      +++|......
T Consensus       189 l~~l~~~~~~  198 (222)
T 3ehr_A          189 LKKKQGTDAV  198 (222)
T ss_dssp             HC--------
T ss_pred             HHHHhccchh
Confidence            8887765554

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=3.2e-22  Score=205.22  Aligned_cols=144  Identities=24%  Similarity=0.192  Sum_probs=113.0

Q ss_pred             chHHHHHHHh-CcHHHHHHHHHcCCCCCCcC--CCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccc
Q 011309           46 NSPLHFAAAK-GHNEIVALLLENGADVNSRN--YCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT  122 (489)
Q Consensus        46 ~TpLh~Aa~~-G~~eivk~LLe~Gad~n~~d--~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l  122 (489)
                      .|+||+|+.. |++++|++||++|+++|..+  .          .|.||||+|+..|+.++|++|++.+.+         
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~----------~g~TpLh~Aa~~g~~~iv~~LL~~Gad---------  260 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQ----------DNATPLIQATAANSLLACEFLLQNGAN---------  260 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTT----------TCCCHHHHHHHTTCHHHHHHHHHTTCC---------
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCcccccc----------CCCCHHHHHHHCCCHHHHHHHHHcCCC---------
Confidence            5899999999 99999999999999999887  5          899999999999999999999987544         


Q ss_pred             ccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHH
Q 011309          123 QIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH  202 (489)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh  202 (489)
                                              +|..|..|.||||+|+..|+.++|++|+++|++++..|..          |.||||
T Consensus       261 ------------------------vn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~----------G~TpL~  306 (368)
T 3jue_A          261 ------------------------VNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSE----------GRDPLT  306 (368)
T ss_dssp             ------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHH
T ss_pred             ------------------------CCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCC----------CCCHHH
Confidence                                    7888999999999999999999999999999999999876          999999


Q ss_pred             HHHHcCCHHHHHHHHHcCC---CCCccCCCCCcHHHHHHHcCc
Q 011309          203 FAACGGNLKCCQVLLSRGA---SRMSLNCNGWLPLDVARMWGR  242 (489)
Q Consensus       203 ~Aa~~g~~eivk~LL~~Ga---dvn~~d~~G~TpL~~A~~~g~  242 (489)
                      +|+..|+.+++++|+.++.   +....+..+.|+++++..+..
T Consensus       307 ~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~~  349 (368)
T 3jue_A          307 IAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSL  349 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHC------------------------
T ss_pred             HHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHHh
Confidence            9999999999999998763   344556778899888876543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.86  E-value=1.4e-21  Score=200.51  Aligned_cols=164  Identities=21%  Similarity=0.125  Sum_probs=116.1

Q ss_pred             hHHHHHHHHc-CCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARD-GDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~-G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      +++||.|+.. |++++|++||+.|++++..+....|.||||+|+..|+.++|++||++|+++|..|.          .|+
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~----------~G~  269 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADS----------AGR  269 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSC
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCC----------CCC
Confidence            5799999999 99999999999999999877444559999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      ||||+|+..|+.+++++|++.++.                                 ++..|..|.||||+|+..|+.++
T Consensus       270 TpLh~A~~~g~~~~v~~LL~~Gad---------------------------------~~~~d~~G~TpL~~A~~~g~~~i  316 (368)
T 3jue_A          270 GPLHHATILGHTGLACLFLKRGAD---------------------------------LGARDSEGRDPLTIAMETANADI  316 (368)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHcCcHHHHHHHHHCcCC---------------------------------CCCcCCCCCCHHHHHHHCCCHHH
Confidence            999999999999999999987654                                 78889999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCC
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN--LKCCQVLLSRGASRM  224 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~--~eivk~LL~~Gadvn  224 (489)
                      |++|+.++..........       ..+.|+|+++.....  .+-.+.|+.++.+++
T Consensus       317 v~lLl~~~~~~~~~~~~~-------~~~~t~l~i~~~~~~~~~~~~ekl~r~~~~~~  366 (368)
T 3jue_A          317 VTLLRLAKMREAEAAQGQ-------AGDETYLDIFRDFSLMASDDPEKLSRRSHDLH  366 (368)
T ss_dssp             HHHHHHHHC------------------------------------------------
T ss_pred             HHHHHHcCCCcccccccC-------CCCCCHHHHHHHHHhhcCCCHHHHHhcCCCcC
Confidence            999998874332211110       137888888766543  334555666655544

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=9.1e-21  Score=186.95  Aligned_cols=166  Identities=22%  Similarity=0.239  Sum_probs=133.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcc------------------------cCCCC-----CCchHHHHHHHhCcHHHH
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAK------------------------YSTFG-----GLNSPLHFAAAKGHNEIV   61 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~------------------------~~~~~-----~g~TpLh~Aa~~G~~eiv   61 (489)
                      .+.|+.+...|+..+.+++...-+....                        .....     ...++|+.|+..|+.+.+
T Consensus        67 ~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~d~~~~  146 (278)
T 1dcq_A           67 TSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTRDIFGL  146 (278)
T ss_dssp             GGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhcccHHH
Confidence            4678999999998776665433221110                        00000     114689999999999999


Q ss_pred             HHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHc---CCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhh
Q 011309           62 ALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKC  138 (489)
Q Consensus        62 k~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  138 (489)
                      +.|++.|++++..-.    ....+..|+||||+|+..   |+.+++++|++.+.+                         
T Consensus       147 ~~ll~~g~~~~~~~~----l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-------------------------  197 (278)
T 1dcq_A          147 LQAYADGVDLTEKIP----LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-------------------------  197 (278)
T ss_dssp             HHHHHTTCCTTSBCC----CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-------------------------
T ss_pred             HHHHHhhcchhhhcc----ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-------------------------
Confidence            999999999654310    000112899999999999   899999999987654                         


Q ss_pred             hhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 011309          139 DQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS  218 (489)
Q Consensus       139 ~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~  218 (489)
                              +|.+|..|.||||+|+..|+.++|++|+++|++++..|..          |.||||+|+..|+.+++++|++
T Consensus       198 --------in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~A~~~~~~~~v~~Ll~  259 (278)
T 1dcq_A          198 --------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----------GETPLDIAKRLKHEHCEELLTQ  259 (278)
T ss_dssp             --------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHH
T ss_pred             --------ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCC----------CCCHHHHHHHcCCHHHHHHHHH
Confidence                    8889999999999999999999999999999999999977          9999999999999999999999


Q ss_pred             cCCCC
Q 011309          219 RGASR  223 (489)
Q Consensus       219 ~Gadv  223 (489)
                      +|++.
T Consensus       260 ~ga~~  264 (278)
T 1dcq_A          260 ALSGR  264 (278)
T ss_dssp             HHTTC
T ss_pred             cCCCC
Confidence            99864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.85  E-value=1e-20  Score=186.60  Aligned_cols=128  Identities=20%  Similarity=0.280  Sum_probs=115.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCccc----CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCCCcccc
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQVTRA   83 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~----~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g~i~~~   83 (489)
                      .++|+.|+..|+++.|+.+++.|++++..    ..+..|+||||+|+..   |+.++|++|+++|+++|.+|.       
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~-------  203 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG-------  203 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT-------
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCC-------
Confidence            35899999999999999999999986533    1233459999999999   899999999999999999998       


Q ss_pred             cCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHH
Q 011309           84 DYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL  163 (489)
Q Consensus        84 d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~  163 (489)
                         .|+||||+|+..|+.++|++|++.+++                                 ++.+|..|.||||+|+.
T Consensus       204 ---~g~TpLh~A~~~g~~~~v~~Ll~~gad---------------------------------~~~~d~~g~tpL~~A~~  247 (278)
T 1dcq_A          204 ---KGSTALHYCCLTDNAECLKLLLRGKAS---------------------------------IEIANESGETPLDIAKR  247 (278)
T ss_dssp             ---TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHH
T ss_pred             ---CCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCccCCCCCHHHHHHH
Confidence               999999999999999999999987654                                 78899999999999999


Q ss_pred             cCCHHHHHHHHhcCCCcc
Q 011309          164 NGYFDCVQLLLDLHANVS  181 (489)
Q Consensus       164 ~g~~e~v~~LL~~Gadvn  181 (489)
                      .|+.+++++|+++|++..
T Consensus       248 ~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          248 LKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             TTCHHHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCCCC
Confidence            999999999999988643

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.8e-20  Score=152.81  Aligned_cols=92  Identities=48%  Similarity=0.715  Sum_probs=83.3

Q ss_pred             CchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccc
Q 011309           45 LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQI  124 (489)
Q Consensus        45 g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~  124 (489)
                      |+||||+|+..|+.+++++|+++|+++|.+|.          .|+||||+|+..|+.+++++|++.+.+           
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~----------~g~t~L~~A~~~~~~~~v~~Ll~~ga~-----------   60 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDK----------NGRTPLHLAARNGHLEVVKLLLEAGAD-----------   60 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCC-----------
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCC----------CCCCHHHHHHHcCCHHHHHHHHHcCCC-----------
Confidence            58999999999999999999999999999988          899999999999999999999987544           


Q ss_pred             ccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCC
Q 011309          125 EGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHAN  179 (489)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gad  179 (489)
                                            ++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus        61 ----------------------~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           61 ----------------------VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             ----------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             ----------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence                                  778888999999999999999999999999875

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.83  E-value=1.8e-20  Score=152.81  Aligned_cols=91  Identities=40%  Similarity=0.533  Sum_probs=85.4

Q ss_pred             CCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCc
Q 011309          153 GGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL  232 (489)
Q Consensus       153 ~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~T  232 (489)
                      +|.||||+|+..|+.+++++|+++|++++..+..          |+||||+|+..|+.+++++|+++|++++.+|.+|+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~----------g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t   70 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN----------GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT   70 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCC
Confidence            4899999999999999999999999999999876          999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCcHhHHHHhcCCC
Q 011309          233 PLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       233 pL~~A~~~g~~~i~~LL~~~~  253 (489)
                      |||+|+..|+.+++++|.+.+
T Consensus        71 ~l~~A~~~~~~~~~~~Ll~~g   91 (93)
T 1n0q_A           71 PLHLAARNGHLEVVKLLLEAG   91 (93)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999887654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.2e-20  Score=159.68  Aligned_cols=107  Identities=33%  Similarity=0.387  Sum_probs=94.7

Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309           85 YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  164 (489)
Q Consensus        85 ~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  164 (489)
                      +.+|+||||+|+..|+.+++++|++.+..                                 ++..|..|.||||+|+..
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---------------------------------~~~~d~~g~t~L~~A~~~   52 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD---------------------------------VNARSKDGNTPLHLAAKN   52 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCC---------------------------------SSCCCSSSCCTTHHHHTT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------------------CCCcCCCCCCHHHHHHHc
Confidence            34899999999999999999999976433                                 777888999999999999


Q ss_pred             CCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Q 011309          165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPL  234 (489)
Q Consensus       165 g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL  234 (489)
                      |+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.++..|++|-
T Consensus        53 ~~~~~~~~Ll~~g~~~~~~d~~----------g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           53 GHAEIVKLLLAKGADVNARSKD----------GNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TCHHHHHHHTTTTCCTTCCCTT----------CCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CcHHHHHHHHHcCCCCcccCCC----------CCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999988876          99999999999999999999999999999999999874

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.80  E-value=7.5e-20  Score=154.75  Aligned_cols=100  Identities=43%  Similarity=0.564  Sum_probs=91.7

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      .|+||||+|+..|+.+++++|+++|++++..|.          .|.||||+|+..|+.+++++|++.+..          
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~----------~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------   67 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK----------DGNTPLHLAAKNGHAEIVKLLLAKGAD----------   67 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCS----------SSCCTTHHHHTTTCHHHHHHHTTTTCC----------
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC----------CCCCHHHHHHHcCcHHHHHHHHHcCCC----------
Confidence            348999999999999999999999999999988          899999999999999999999976543          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCccccccc
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFH  186 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~  186 (489)
                                             ++.+|..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus        68 -----------------------~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~  107 (115)
T 2l6b_A           68 -----------------------VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWG  107 (115)
T ss_dssp             -----------------------TTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCC
T ss_pred             -----------------------CcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcc
Confidence                                   7788889999999999999999999999999999998876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=1.3e-18  Score=146.57  Aligned_cols=94  Identities=31%  Similarity=0.308  Sum_probs=86.1

Q ss_pred             hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 011309          147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  226 (489)
Q Consensus       147 in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~  226 (489)
                      ....|.+|.|+||+|+..|+.+++++|+++|++++..+..          |.||||+|+..|+.+++++|+++|++++.+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~   86 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN----------GSTPLHLAARNGHLEVVKLLLEAGADVXAQ   86 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCC----------CCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            6677889999999999999999999999999999999866          999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          227 NCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       227 d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      |..|+||||+|+..|+.+++++|.
T Consensus        87 d~~g~tpl~~A~~~~~~~~~~~L~  110 (110)
T 2zgd_A           87 DKFGKTAFDISIDNGNEDLAEILQ  110 (110)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHC
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHhC
Confidence            999999999999999999999883

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=1.3e-16  Score=134.37  Aligned_cols=87  Identities=37%  Similarity=0.559  Sum_probs=81.6

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      ...++||+|+..|+.++|++|++.|++++..+..+  +||||+|+..|+.+++++|+++|++++.+|.          .|
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g--~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~----------~g   90 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNG--STPLHLAARNGHLEVVKLLLEAGADVXAQDK----------FG   90 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC--CCHHHHHHHcCCHHHHHHHHHcCCCcccccc----------CC
Confidence            45689999999999999999999999998876655  9999999999999999999999999999998          99


Q ss_pred             ChHHHHHHHcCCHHHHHHH
Q 011309           89 RTALHFAAVNGHVRCIRLV  107 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~L  107 (489)
                      +||||+|+..|+.+++++|
T Consensus        91 ~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           91 KTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CCHHHHHHHHTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHh
Confidence            9999999999999999987

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.20  E-value=4.2e-07  Score=68.57  Aligned_cols=54  Identities=26%  Similarity=0.533  Sum_probs=43.6

Q ss_pred             CCCcchhhhhhhhccccccc--CCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          290 SDDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~--~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ..+...|.||+++..++.+.  +|||. +|..|+..+-..            ...||+||+.|.+++++
T Consensus         5 ~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~------------~~~CPiCR~~i~~~i~i   61 (64)
T 2vje_A            5 LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR------------NKPCPVCRQPIQMIVLT   61 (64)
T ss_dssp             CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT------------TCCCTTTCCCCCEEEEE
T ss_pred             CCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc------------CCcCCCcCcchhceEee
Confidence            34567899999999998876  99999 799999877421            12499999999988764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.17  E-value=7.3e-07  Score=68.13  Aligned_cols=52  Identities=31%  Similarity=0.749  Sum_probs=43.8

Q ss_pred             CCCcchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ..+...|.||++...++.+.||||. +|..|+..+                ..||+||..|..++++-.
T Consensus        12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~CR~~i~~~~~i~~   64 (68)
T 2ea5_A           12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----------------QQCPMCRQFVQESFALSG   64 (68)
T ss_dssp             CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----------------SSCTTTCCCCCCEECCCS
T ss_pred             CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----------------CCCCCCCcchhceEEeec
Confidence            4456789999999999999999999 899988732                249999999999987743

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.13  E-value=6.8e-07  Score=67.19  Aligned_cols=53  Identities=25%  Similarity=0.515  Sum_probs=41.9

Q ss_pred             CCcchhhhhhhhccccccc--CCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          291 DDADTCAVCLERACTVAAE--GCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~--~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      .....|.+|+++..+..+.  +|||. +|..|+..+-..            ...||+||+.|.+++++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~------------~~~CPiCR~~i~~~i~i   60 (63)
T 2vje_B            5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA------------GASCPICKKEIQLVIKV   60 (63)
T ss_dssp             GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT------------TCBCTTTCCBCCEEEEE
T ss_pred             CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh------------CCcCCCcCchhhceEEE
Confidence            4457899999988776555  99998 799999877421            12599999999998875

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.86  E-value=3.8e-06  Score=65.17  Aligned_cols=48  Identities=27%  Similarity=0.669  Sum_probs=40.9

Q ss_pred             CcchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          292 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      +...|.||++...+....+|||. +|..|+..+                ..||+||..|.+++++
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   71 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   71 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----------------SBCTTTCCBCSEEEEC
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----------------ccCCCcCcCccCcEEE
Confidence            34679999999999999999999 899997554                3599999999998764

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.80  E-value=7.4e-06  Score=64.41  Aligned_cols=48  Identities=31%  Similarity=0.643  Sum_probs=40.8

Q ss_pred             cchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          293 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      ...|.+|++...++...+|||. +|..|+..+                ..||+||..|.+++++-
T Consensus        18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i~   66 (79)
T 2yho_A           18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----------------QSCPVCRSRVEHVQHVY   66 (79)
T ss_dssp             HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----------------SBCTTTCCBCCEEEECB
T ss_pred             CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----------------CcCCCCCchhhCeEEEE
Confidence            4579999999999999999999 888888543                15999999999997753

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.80  E-value=6.7e-06  Score=63.86  Aligned_cols=47  Identities=28%  Similarity=0.664  Sum_probs=39.7

Q ss_pred             cchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          293 ADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ...|.||++...++...+|||. +|..|+-.+                ..||+||..|...+++
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----------------~~CP~Cr~~i~~~~~i   72 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----------------DKCPMCYTVITFKQKI   72 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----------------SBCTTTCCBCCCCCBC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----------------CCCccCCceecCcEEE
Confidence            4679999999999999999999 999998422                3599999999987654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=97.67  E-value=3.6e-05  Score=59.91  Aligned_cols=56  Identities=25%  Similarity=0.518  Sum_probs=41.8

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .+...|.||++..-+....+|||.||..|+..+-....     ....+...||+||..+..
T Consensus        10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~-----~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A           10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAV-----TSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCS-----SSCCCCCCCSSSCCCCCS
T ss_pred             ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcc-----cCCCCCCcCCCCCCcCCH
Confidence            45677999999998888889999999999876642211     111245679999998875

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=97.58  E-value=6.4e-05  Score=59.14  Aligned_cols=55  Identities=27%  Similarity=0.606  Sum_probs=42.8

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .+...|.||++..-+....+|+|.||..|...+-....      ...+...||+||..+..
T Consensus        17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~------~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNR------NTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSB------CTTSCBCCTTTCCCCCT
T ss_pred             ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhcc------CCCCCCCCCCCCCcCCH
Confidence            45678999999988877889999999999988865432      11234579999998864

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=97.57  E-value=2.4e-05  Score=59.13  Aligned_cols=54  Identities=30%  Similarity=0.614  Sum_probs=42.6

Q ss_pred             CCcchhhhhhhhccc-ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          291 DDADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       291 ~~~~~C~iCle~~~~-v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      .....|.+|++..-+ +...+|||.||..|+..+-...            ..||+||..|..++...
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~   57 (68)
T 1chc_A            3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVVHTI   57 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEECCC
T ss_pred             CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCc------------CcCcCCChhhHhhhhcc
Confidence            345789999999877 5788999999999998875322            25999999999876543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=97.56  E-value=2.9e-05  Score=56.02  Aligned_cols=49  Identities=27%  Similarity=0.527  Sum_probs=38.8

Q ss_pred             CCcchhhhhhhhccc----ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~----v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .+...|.||++..-+    +...+|+|.||..|+..+-...            ..||+||..|.+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~g   55 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG------------YRCPLCSGPSSG   55 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT------------CCCTTSCCSSCC
T ss_pred             CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC------------CcCCCCCCcCCC
Confidence            356789999998754    7888999999999998875332            349999998753

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.54  E-value=2.7e-05  Score=59.61  Aligned_cols=51  Identities=27%  Similarity=0.541  Sum_probs=41.1

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ..+...|.||++..-+....+|+|.||..|+..+....            ..||+||..|..-
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLG------------KRCALCRQEIPED   62 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCS------------SBCSSSCCBCCHH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCC------------CcCcCcCchhCHh
Confidence            34567899999999888888999999999998774211            3599999998754

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.51  E-value=5.6e-05  Score=58.15  Aligned_cols=56  Identities=27%  Similarity=0.619  Sum_probs=42.3

Q ss_pred             CCCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          290 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ....+.|.||++..-.   +...+|+|.||..|+..+-...            ..||+||..|..+..+++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~~~   70 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR------------KVCPLCNMPVLQLAQLSG   70 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHC------------SBCTTTCCBCSSCCSCCC
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcC------------CcCCCcCcccccccccCC
Confidence            3456789999998643   3344899999999998875332            149999999988877665

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.47  E-value=0.0001  Score=57.97  Aligned_cols=56  Identities=25%  Similarity=0.579  Sum_probs=42.8

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.||++..-+....+|||.||..|...+-.....      ..+...||+||..|..
T Consensus        16 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~------~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSML------DKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHH------TTSCCCCTTTCCSSCS
T ss_pred             ccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhc------CCCCCcCCCCCCccCH
Confidence            3456789999999888888899999999999887644210      1124569999999875

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.46  E-value=4.8e-05  Score=57.43  Aligned_cols=50  Identities=22%  Similarity=0.636  Sum_probs=39.6

Q ss_pred             CCCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.||++..-+.       ...+|+|.||..|+..+-...            ..||+||..|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcC------------CCCCCCCCccCc
Confidence            45667899999987664       778999999999998885331            259999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=97.45  E-value=8.5e-05  Score=56.27  Aligned_cols=52  Identities=29%  Similarity=0.520  Sum_probs=39.6

Q ss_pred             CCCcchhhhhhhhc---ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          290 SDDADTCAVCLERA---CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       290 ~~~~~~C~iCle~~---~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      ......|.||++..   -.+...+|+|.||..|+..+-...            ..||+||..|....
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITN------------KKCPICRVDIEAQL   65 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCSBSCSCC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcC------------CCCcCcCccccCcC
Confidence            45567899997765   456778999999999998875332            14999999887644

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.43  E-value=9.8e-05  Score=56.56  Aligned_cols=52  Identities=17%  Similarity=0.393  Sum_probs=40.4

Q ss_pred             CCCcchhhhhhhhcccccc-cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          290 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~-~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      ......|.||++..-+... .+|+|.||..|+..+-...            ..||+||..|..-.
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~~   64 (72)
T 2djb_A           12 LTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYS------------NRCPKCNIVVHQTQ   64 (72)
T ss_dssp             CCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHC------------SSCTTTCCCCCSSC
T ss_pred             cCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcC------------CcCCCcCcccCccc
Confidence            3456789999999876655 4999999999998875331            35999999987643

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.40  E-value=7.3e-05  Score=57.25  Aligned_cols=52  Identities=25%  Similarity=0.707  Sum_probs=40.7

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .....|.||++..-+....+|||.||..|+..+-..         ..+...||+||..|..
T Consensus        18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---------~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGET---------SCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSS---------SCSCCCCSSSCCCCCC
T ss_pred             ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHc---------CCCCCCCCCCCCcCCc
Confidence            456789999999888888899999999999888421         1134469999998753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=97.38  E-value=6.8e-05  Score=54.03  Aligned_cols=48  Identities=33%  Similarity=0.650  Sum_probs=35.7

Q ss_pred             CCcchhhhhhhhccc---ccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          291 DDADTCAVCLERACT---VAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       291 ~~~~~C~iCle~~~~---v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      .+...|.||++..-.   +...+ |+|.||..|...+-..            ...||+||..|.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~------------~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS------------HSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT------------CCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc------------CCcCcCCCCEeE
Confidence            455789999998766   55555 9999999999777311            235999998763

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=97.37  E-value=5.7e-05  Score=65.78  Aligned_cols=47  Identities=30%  Similarity=0.643  Sum_probs=38.6

Q ss_pred             chhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          294 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       294 ~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ..|.||++..-+....+|||.||..|+..+-..            ...||+||..|.+.
T Consensus        54 ~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~------------~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR------------KIECPICRKDIKSK  100 (138)
T ss_dssp             SBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT------------CSBCTTTCCBCCCE
T ss_pred             CCCcccCcccCCceECCCCCCccHHHHHHHHHc------------CCcCCCCCCcCCCC
Confidence            359999999988888999999999999776321            23599999998765

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=97.35  E-value=6.1e-05  Score=57.32  Aligned_cols=50  Identities=22%  Similarity=0.636  Sum_probs=39.7

Q ss_pred             CCCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.||++..-+.       ...+|||.||..|+..+-...            ..||+||..+..
T Consensus         7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   63 (71)
T 3ng2_A            7 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   63 (71)
T ss_dssp             CTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCC
T ss_pred             CCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcC------------CCCCCCCCccCh
Confidence            45667899999987664       788999999999998885332            259999998764

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.33  E-value=0.00012  Score=58.09  Aligned_cols=53  Identities=21%  Similarity=0.532  Sum_probs=41.1

Q ss_pred             CCCcchhhhhhhhccc----ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACT----VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~----v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.||++..-+    ....+|||.||..|+..+-...         .+...||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~Cr~~~~~   68 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASS---------INGVRCPFCSKITRI   68 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHC---------SSCBCCTTTCCCBCC
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcC---------CCCcCCCCCCCcccc
Confidence            3456789999999877    7778999999999998886433         123569999987643

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.27  E-value=6.5e-05  Score=54.70  Aligned_cols=45  Identities=24%  Similarity=0.499  Sum_probs=36.1

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      .+...|.+|++...+....+|||.||..|+..               ....||+||..+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~---------------~~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHcc---------------CCCCCCcCCcEee
Confidence            34567999999999989999999998888643               2346999998875

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=97.23  E-value=0.00021  Score=55.90  Aligned_cols=52  Identities=21%  Similarity=0.456  Sum_probs=37.2

Q ss_pred             CCCcchhhhhhhhc--ccccccC--CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          290 SDDADTCAVCLERA--CTVAAEG--CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       290 ~~~~~~C~iCle~~--~~v~~~~--C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ..+...|.||+|..  -++...+  |||.||..|...+-..           +...||.||..+...
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-----------~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-----------ENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-----------SCSBCTTTCCBCSSC
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-----------CCCCCCCCCCccCCC
Confidence            34556899999965  2334444  9999999999877421           134699999988764

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=97.23  E-value=8.5e-05  Score=55.14  Aligned_cols=48  Identities=23%  Similarity=0.644  Sum_probs=37.8

Q ss_pred             Ccchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          292 DADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       292 ~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      +...|.||++..-+.       ...+|||.||..|+..+-...            ..||+||..+..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC------------SBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcC------------CCCCCCCccCCc
Confidence            346799999887654       678999999999998885431            259999998875

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=5.7e-05  Score=57.43  Aligned_cols=51  Identities=22%  Similarity=0.640  Sum_probs=40.7

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      ..+...|.||++...+ ...+|+|.||..|+..+-.            +...||+||..|....
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~------------~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD------------RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC------------CCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH------------CcCcCCCcCCcccCCC
Confidence            3456789999999988 7889999999999987631            2346999999987653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.19  E-value=0.00022  Score=55.30  Aligned_cols=54  Identities=22%  Similarity=0.481  Sum_probs=39.6

Q ss_pred             CCCcchhhhhhhhcc---cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          290 SDDADTCAVCLERAC---TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       290 ~~~~~~C~iCle~~~---~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ......|.||++..-   .+...+|+|.||..|+..+-...            ..||+||..|..-...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~~~~   68 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQH------------DSCPVCRKSLTGQNTA   68 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTT------------CSCTTTCCCCCCSCSC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcC------------CcCcCcCCccCCcccC
Confidence            345678999987754   33556899999999998874211            2599999998775433

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.18  E-value=0.00012  Score=56.54  Aligned_cols=50  Identities=24%  Similarity=0.561  Sum_probs=38.0

Q ss_pred             CCCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.||++..-.   +...+|+|.||..|+..+-...            ..||+||..|..
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~------------~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN------------RTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHC------------SSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcC------------CcCcCcCCcCCC
Confidence            3456789999977543   4678899999999998885332            249999988754

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=97.18  E-value=0.00013  Score=58.79  Aligned_cols=50  Identities=20%  Similarity=0.443  Sum_probs=38.2

Q ss_pred             CCCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          290 SDDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ..+...|.||++..-.   +...+|+|.||..|+..+-..            ...||+||..|..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~------------~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK------------SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT------------TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc------------CCcCcCcCccCCC
Confidence            3456789999987655   677889999999999887521            1259999988753

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.16  E-value=0.00022  Score=55.90  Aligned_cols=49  Identities=22%  Similarity=0.480  Sum_probs=40.1

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .....|.||++..-+....+|||.||..|+..+-..            ...||+||..+..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~------------~~~CP~Cr~~~~~   61 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA------------TPRCYICDQPTGG   61 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH------------CSBCSSSCCBCCS
T ss_pred             CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC------------CCcCCCcCccccc
Confidence            345679999999988888999999999999888532            2259999999863

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.15  E-value=0.00022  Score=53.45  Aligned_cols=50  Identities=30%  Similarity=0.662  Sum_probs=40.0

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .....|.+|++..-+....+|||.+|..|+..+-.           .+...||+||..|..
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~-----------~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLS-----------SSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHT-----------TSSCCCTTTCCCCCT
T ss_pred             CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHH-----------hCcCCCCCCCcCCCh
Confidence            44577999999998888899999999999988852           122359999998764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=97.13  E-value=0.00028  Score=56.65  Aligned_cols=51  Identities=22%  Similarity=0.483  Sum_probs=39.9

Q ss_pred             CCcchhhhhhhhcccccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .+...|.||++..-+....+ |||.||..|+...-....          ...||+||..+..
T Consensus        11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~----------~~~CP~Cr~~~~~   62 (92)
T 3ztg_A           11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESD----------EHTCPTCHQNDVS   62 (92)
T ss_dssp             CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCT----------TCCCTTTCCSSCC
T ss_pred             CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcC----------CCcCcCCCCcCCC
Confidence            45578999999988877888 999999999987754321          2359999998743

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.08  E-value=0.00018  Score=53.77  Aligned_cols=48  Identities=25%  Similarity=0.557  Sum_probs=35.1

Q ss_pred             cchhhhhhh-hcccc----cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          293 ADTCAVCLE-RACTV----AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       293 ~~~C~iCle-~~~~v----~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ...|.||++ ..-+.    ...+|||.||..|+..+-..           +...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-----------GAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-----------TSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-----------CCCcCCCCCCcccc
Confidence            457999999 43333    35799999999999877421           12359999998864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=97.08  E-value=0.00025  Score=54.59  Aligned_cols=51  Identities=22%  Similarity=0.469  Sum_probs=40.1

Q ss_pred             CCcchhhhhhhhcccccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .....|.||++..-+....+ |||.||..|+..+-...          +...||+||..+.+
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~----------~~~~CP~Cr~~~~~   64 (74)
T 2yur_A           13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES----------DEHTCPTCHQNDVS   64 (74)
T ss_dssp             CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS----------SSSCCSSSCCSSCC
T ss_pred             CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc----------CCCcCCCCCCcCCC
Confidence            45578999999998888888 99999999998886432          12359999996543

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.07  E-value=0.00023  Score=59.23  Aligned_cols=51  Identities=31%  Similarity=0.697  Sum_probs=40.5

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ...|.||++..-+....+|||.||..|+..+-....         +...||+||..|..-
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~~~   71 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDITKR   71 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCCTT
T ss_pred             CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCC---------CCCCCcCCCCcCCHh
Confidence            457999999988888889999999999988864331         234699999988754

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=97.04  E-value=0.00015  Score=72.92  Aligned_cols=49  Identities=33%  Similarity=0.710  Sum_probs=41.9

Q ss_pred             CcchhhhhhhhcccccccCCcch-hhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          292 DADTCAVCLERACTVAAEGCRHE-LCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~-~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      +...|.||++...++...+|||. +|..|+..+                ..||+||..|.+.+++.
T Consensus       294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----------------~~CP~CR~~i~~~~~i~  343 (345)
T 3t6p_A          294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----------------RKCPICRGIIKGTVRTF  343 (345)
T ss_dssp             TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----------------SBCTTTCCBCCEEEECC
T ss_pred             CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----------------CcCCCCCCCccCeEEee
Confidence            34789999999999999999999 898887644                24999999999998774

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=97.02  E-value=0.00029  Score=71.44  Aligned_cols=53  Identities=26%  Similarity=0.582  Sum_probs=43.4

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      ...|.||++...++...+|||.+|..|+..+...           +...||+||..|.....+.
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-----------~~~~CP~CR~~i~~~~~i~  384 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-----------EGQGCPFCRCEIKGTEPIV  384 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-----------TCSBCTTTCCBCCEEEECS
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-----------CCCCCCCCCCccCCceeEe
Confidence            3689999999999999999999999999877532           1235999999998875543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=96.91  E-value=0.00028  Score=57.77  Aligned_cols=50  Identities=20%  Similarity=0.526  Sum_probs=40.2

Q ss_pred             CCcchhhhhhhhcccccc-cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          291 DDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~-~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      .+...|.||++..-+... .+|||.||..|+..+-....           ..||+||..+..
T Consensus        20 ~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~   70 (100)
T 3lrq_A           20 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQR-----------AQCPHCRAPLQL   70 (100)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTC-----------SBCTTTCCBCCG
T ss_pred             CCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCc-----------CCCCCCCCcCCH
Confidence            345679999999988777 99999999999988864431           359999998853

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=96.91  E-value=0.0004  Score=59.07  Aligned_cols=48  Identities=23%  Similarity=0.526  Sum_probs=39.2

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ...|.||++..-+....+|||.||..|+...-..           +...||+||..+..
T Consensus        52 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           52 TFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-----------QVFSCPACRYDLGR   99 (124)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCT
T ss_pred             CCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-----------CcCCCCCCCccCCC
Confidence            4579999999988888899999999999877531           12359999999876

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=96.83  E-value=0.00038  Score=53.96  Aligned_cols=59  Identities=12%  Similarity=0.131  Sum_probs=43.9

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  360 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~  360 (489)
                      .....|.+|++..-+....+|||.||..|+...-..           +...||+||..+..-...|...+
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-----------~~~~CP~C~~~~~~~~l~~n~~l   64 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-----------GHKTCPKSQETLLHAGLTPNYVL   64 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-----------TCCBCTTTCCBCSSCCCEECTTT
T ss_pred             cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-----------CcCCCCCCcCCCChhhCccCHHH
Confidence            345789999998888888899999999999888521           13469999998875443444333

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=96.80  E-value=0.00044  Score=56.32  Aligned_cols=48  Identities=25%  Similarity=0.557  Sum_probs=37.9

Q ss_pred             Ccchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          292 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      ....|.||++..-+.... +|||.||..|+...-..            ...||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~------------~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY------------KTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT------------CCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC------------CCCCCCCCCcCCh
Confidence            346799999998776655 89999999999887531            1359999998875

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=96.72  E-value=0.00058  Score=60.27  Aligned_cols=49  Identities=24%  Similarity=0.571  Sum_probs=40.3

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ...|.||++..-+....+|||.||..|+...-..           +...||+||..|..-
T Consensus        78 ~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           78 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-----------QVFSCPACRHDLGQN  126 (150)
T ss_dssp             HTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCTT
T ss_pred             CCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-----------CCCcCCCCCccCCCC
Confidence            3579999999988888999999999999888642           123599999998765

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=96.71  E-value=0.00038  Score=58.34  Aligned_cols=51  Identities=27%  Similarity=0.651  Sum_probs=39.9

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      .+...|.||++..-+....+|||.||..|+..+-..           +...||+||..|..+
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~   63 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-----------ASLCCPFCRRRVSSW   63 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-----------TTSBCTTTCCBCHHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-----------CcCCCCCCCcccCcc
Confidence            345679999999888888899999999998665311           234699999999864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=96.62  E-value=0.00074  Score=56.39  Aligned_cols=54  Identities=24%  Similarity=0.581  Sum_probs=38.9

Q ss_pred             Ccchhhhhhhhccc------------------ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          292 DADTCAVCLERACT------------------VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       292 ~~~~C~iCle~~~~------------------v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ..+.|.||++....                  +...+|+|.||..|+..+-...++       .....||+||..+...
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~-------~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBSSSC
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccC-------CCCCcCCCCCCccCCC
Confidence            34689999998643                  237899999999999988643221       1234699999877654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=96.59  E-value=0.00072  Score=56.01  Aligned_cols=50  Identities=20%  Similarity=0.482  Sum_probs=39.4

Q ss_pred             CCcchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          291 DDADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      .....|.||++..-+.... +|||.||..|+...-...            ..||+||..|..-
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~------------~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETS------------KYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSC------------SBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhC------------CcCcCCCcccccc
Confidence            3456799999998777665 999999999998875221            3599999988753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.56  E-value=0.0018  Score=46.73  Aligned_cols=47  Identities=28%  Similarity=0.653  Sum_probs=36.5

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCc
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  345 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~C  345 (489)
                      ......|.||++..-+....+|||.||..|+..+-...         .+...||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~---------~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDL---------ERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSS---------CCSCCCSCC
T ss_pred             cccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhc---------CCCCCCCCC
Confidence            34567899999999888889999999999998884221         123469998

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=96.43  E-value=0.0013  Score=55.41  Aligned_cols=58  Identities=17%  Similarity=0.446  Sum_probs=44.0

Q ss_pred             CCCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          289 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       289 ~~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      .......|.||++..-+....+|||.||..|+..+-....           ..||+||..|..-...|.
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~~   71 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFPD   71 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEEC
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCC-----------CCCCCCCCCcCHHhcccC
Confidence            3455678999999988877889999999999988754332           159999999876443343

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.42  E-value=0.001  Score=52.20  Aligned_cols=47  Identities=32%  Similarity=0.676  Sum_probs=32.4

Q ss_pred             Ccchhhhhhhhccc--------------c-cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          292 DADTCAVCLERACT--------------V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       292 ~~~~C~iCle~~~~--------------v-~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      ..+.|.||++..-.              + ...+|+|.|+..|+...-...            ..||+||..+.
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~CR~~~~   75 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN------------NRCPLCQQDWV   75 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC------------CBCTTTCCBCC
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC------------CCCCCcCCCcc
Confidence            44567777766532              2 344699999999998884221            25999998764

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=96.42  E-value=0.00092  Score=59.81  Aligned_cols=51  Identities=27%  Similarity=0.688  Sum_probs=39.8

Q ss_pred             Ccchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          292 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      ....|.||++..-+.... +|||.||..|+..+-..           +...||+||..|....
T Consensus        53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-----------~~~~CP~Cr~~~~~~~  104 (165)
T 2ckl_B           53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-----------GNKECPTCRKKLVSKR  104 (165)
T ss_dssp             HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-----------TCCBCTTTCCBCCSGG
T ss_pred             CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-----------CcCCCCCCCCcCCCcc
Confidence            345799999998876655 99999999999888632           1235999999986543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=96.38  E-value=0.0018  Score=55.18  Aligned_cols=50  Identities=22%  Similarity=0.611  Sum_probs=39.3

Q ss_pred             CCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          291 DDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      .+...|.||++..-+.       ...+|||.||..|+..+-...            ..||+||..+..-
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~   61 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINHK   61 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTC------------SBCTTTCCBCTTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhC------------CCCCCCCCcCccc
Confidence            4567899999987665       788999999999998885221            2599999988643

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.38  E-value=0.0016  Score=48.18  Aligned_cols=46  Identities=28%  Similarity=0.783  Sum_probs=36.3

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLC  345 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~C  345 (489)
                      .....|.||++..-+....+|||.||..|+..+-....         +...||+|
T Consensus        18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~C   63 (63)
T 2ysj_A           18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSC---------GFFKCPLC   63 (63)
T ss_dssp             CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCS---------SCCCCSCC
T ss_pred             ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCC---------CCCcCcCC
Confidence            45678999999998888889999999999988864311         23359998

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=96.24  E-value=0.0012  Score=55.55  Aligned_cols=45  Identities=22%  Similarity=0.513  Sum_probs=37.0

Q ss_pred             Ccchhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          292 DADTCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      ....|.||++..-+.... +|||.||..|+...-.              ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--------------~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--------------TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--------------TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--------------CCCcCCCCcCc
Confidence            346799999999888887 9999999999977631              35999999874

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=96.09  E-value=0.0022  Score=53.71  Aligned_cols=50  Identities=22%  Similarity=0.495  Sum_probs=40.1

Q ss_pred             cchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          293 ADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       293 ~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      ...|.||++..-+....+|||.||..|+...-...           ...||+||..|..-.
T Consensus        23 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-----------~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           23 SISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-----------cCcCCCCCCCCCHhh
Confidence            45799999999888888999999999998875332           125999999987643

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=95.59  E-value=0.0037  Score=53.14  Aligned_cols=51  Identities=22%  Similarity=0.602  Sum_probs=39.5

Q ss_pred             CCCcchhhhhhhhcccc-------cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          290 SDDADTCAVCLERACTV-------AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v-------~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      ..+...|.+|++..-..       ...+|||.||..|+..+-...            ..||+||..|..-
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~------------~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA------------NTCPTCRKKINHK  126 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHC------------SBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcC------------CCCCCCCCcCChh
Confidence            35567799999887654       678999999999998875332            2599999988753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=95.58  E-value=0.0021  Score=56.00  Aligned_cols=49  Identities=22%  Similarity=0.472  Sum_probs=39.2

Q ss_pred             CCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          290 SDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      ....-.|.||++-..+....+|||.||..|+..+-..           +...||+||..|
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-----------~~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-----------GPQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-----------SCEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-----------CCCCCCCCCCcc
Confidence            3456789999999888888899999999999887521           123599999976

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=95.47  E-value=0.0047  Score=51.08  Aligned_cols=46  Identities=30%  Similarity=0.507  Sum_probs=33.7

Q ss_pred             Ccchhhhhhhhcc------------------cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          292 DADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       292 ~~~~C~iCle~~~------------------~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      ..+.|.||++..-                  .+...+|+|.|+..|+...-..            ...||+||...
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~------------~~~CP~Cr~~~   99 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------------RQVCPLDNREW   99 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT------------CSBCSSSCSBC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc------------CCcCcCCCCcc
Confidence            4577888876543                  3456899999999999888422            12599999874

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=95.00  E-value=0.0044  Score=52.14  Aligned_cols=47  Identities=30%  Similarity=0.469  Sum_probs=1.5

Q ss_pred             CCcchhhhhhhhcc------------------cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          291 DDADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       291 ~~~~~C~iCle~~~------------------~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      ...+.|.||++..-                  .+...+|+|.|+..|+...-..            ...||+||...
T Consensus        46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~------------~~~CP~Cr~~~  110 (117)
T 4a0k_B           46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT------------RQVCPLDNREW  110 (117)
T ss_dssp             CCC--------------------------------------------------------------------------
T ss_pred             CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc------------CCcCCCCCCee
Confidence            34588999987753                  3344689999999998776422            12499999874

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=94.86  E-value=0.0083  Score=47.37  Aligned_cols=55  Identities=9%  Similarity=-0.136  Sum_probs=42.8

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ...-.|.+|++-.-+....+|||.+|..|+...-...            ..||+||..+..-.-.|.
T Consensus        12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~------------~~cP~~~~~l~~~~l~pn   66 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNS------------PTDPFNRQMLTESMLEPV   66 (85)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHC------------SBCTTTCCBCCGGGCEEC
T ss_pred             chheECcccCchhcCCeECCCCCEECHHHHHHHHhcC------------CCCCCCcCCCChHhcchH
Confidence            4567899999999999989999999999998885421            249999988765443343

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.76  E-value=0.015  Score=45.47  Aligned_cols=58  Identities=22%  Similarity=0.461  Sum_probs=42.3

Q ss_pred             CCCcchhhhhhhhc--ccccccCCc-----chhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          290 SDDADTCAVCLERA--CTVAAEGCR-----HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       290 ~~~~~~C~iCle~~--~~v~~~~C~-----H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ..+.+.|.||++..  -.....+|.     |.|-..|+..+-....          ...||+||..+.--.++++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~----------~~~CplCr~~~~~~~~~~P   76 (80)
T 2d8s_A           12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSD----------TRCCELCKYEFIMETKLSG   76 (80)
T ss_dssp             CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHC----------CSBCSSSCCBCCCCCCSCC
T ss_pred             CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCC----------CCCCCCCCCeeecCcccCC
Confidence            45668899999764  233467996     9999999998875542          2359999999876555554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.75  E-value=0.013  Score=52.35  Aligned_cols=57  Identities=18%  Similarity=0.453  Sum_probs=43.1

Q ss_pred             CCCCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecC
Q 011309          289 SSDDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLP  356 (489)
Q Consensus       289 ~~~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~  356 (489)
                      ...+.-.|.||++-.-+....+|||.||..|...+-....           ..||+||..|..-...|
T Consensus        14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~-----------~~CP~Cr~~~~~~~~~~   70 (170)
T 3hcs_A           14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAG-----------HKCPVDNEILLENQLFP   70 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHC-----------SBCTTTCCBCCGGGCEE
T ss_pred             CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCC-----------CCCCCCccCcchhhhhh
Confidence            3455678999999988877889999999999988753321           15999999887643333

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.69  E-value=0.0059  Score=58.84  Aligned_cols=59  Identities=8%  Similarity=-0.077  Sum_probs=44.5

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  360 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~  360 (489)
                      ...-.|.||++-.-+....+|||.+|..|+...-...           ...||+||..+..-.-+|...+
T Consensus       206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-----------~~~cP~~~~~~~~~~l~~n~~l  264 (281)
T 2c2l_A          206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQEQLIPNLAM  264 (281)
T ss_dssp             CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGGGCEECHHH
T ss_pred             CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-----------CCCCcCCCCCCchhcCcccHHH
Confidence            3456799999999999999999999999998775332           1139999999875544454333

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=94.35  E-value=0.007  Score=49.42  Aligned_cols=55  Identities=11%  Similarity=-0.118  Sum_probs=42.4

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ...-.|.+|++-.-+....+|||.+|..|+...-..            ...||+||..+..-.-.|.
T Consensus        27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~------------~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN------------SPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS------------CSBCSSSCCBCCTTSSEEC
T ss_pred             cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc------------CCCCCCCCCCCChhhceEC
Confidence            445789999999999999999999999999887421            1359999998765433333

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.27  E-value=0.0087  Score=48.04  Aligned_cols=53  Identities=21%  Similarity=0.439  Sum_probs=36.1

Q ss_pred             Ccchhhhhhhhcccc---cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCC--cccc
Q 011309          292 DADTCAVCLERACTV---AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG  348 (489)
Q Consensus       292 ~~~~C~iCle~~~~v---~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~--CR~~  348 (489)
                      +...|.||++..-..   ...+|+|.||..|....-.....    .+....+.||.  ||..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~----~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK----EGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH----HCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhh----cCCcccccCccccCCCC
Confidence            456799999876443   23489999999998777643310    11113467999  9987

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=94.05  E-value=0.01  Score=48.31  Aligned_cols=55  Identities=9%  Similarity=-0.069  Sum_probs=42.6

Q ss_pred             CCcchhhhhhhhcccccccCCc-chhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          291 DDADTCAVCLERACTVAAEGCR-HELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~-H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      ...-.|.||++-.-+....+|| |.+|..|+...-..            ...||+||..+..-.-+|.
T Consensus        20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~------------~~~cP~~~~~l~~~~L~pn   75 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS------------DQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT------------SCBCTTTCSBCCTTTSEEC
T ss_pred             cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh------------CCCCCCCCCCCChhhceEc
Confidence            3456799999999999999999 99999999877421            1259999998875444444

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=91.84  E-value=0.033  Score=50.36  Aligned_cols=59  Identities=10%  Similarity=-0.042  Sum_probs=44.8

Q ss_pred             CCcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCc
Q 011309          291 DDADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPV  360 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~  360 (489)
                      ...-.|.+|++-.-+....+|||.+|..|+...-...          +. .||+||..+..-.-+|...+
T Consensus       104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~----------~~-tcP~t~~~l~~~~L~pN~~L  162 (179)
T 2f42_A          104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV----------GH-FDPVTRSPLTQDQLIPNLAM  162 (179)
T ss_dssp             CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT----------CS-BCTTTCCBCCGGGCEECHHH
T ss_pred             cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC----------CC-CCCCCcCCCChhhCcchHHH
Confidence            4567899999999999999999999999998876432          11 49999998876544454333

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.84  E-value=0.039  Score=44.25  Aligned_cols=61  Identities=16%  Similarity=0.278  Sum_probs=43.1

Q ss_pred             CCcchhhhhhhhcccccccC-CcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCC--cccc-cccceecCC
Q 011309          291 DDADTCAVCLERACTVAAEG-CRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHG-IVSFTKLPG  357 (489)
Q Consensus       291 ~~~~~C~iCle~~~~v~~~~-C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~--CR~~-I~~~~~~~~  357 (489)
                      .....|.||++-.-+....+ |||.||..|+...-.....      ..+...||+  |+.. +..-.-.|.
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~------~~~~~~CP~tgc~~~~l~~~~L~pn   69 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQK------RKKKAYCPQIGCSHTDIRKSDLIQD   69 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHT------TTCCBCCCSTTCCCCCBCGGGEEEC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccC------cCCCCCCCcCcCcccccCHhhCcCC
Confidence            44567999999999988885 9999999999888644310      112346999  9976 554433444

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=91.63  E-value=0.086  Score=42.48  Aligned_cols=39  Identities=21%  Similarity=0.488  Sum_probs=29.8

Q ss_pred             ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          306 VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       306 v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ...-||.|-||..|+...-...           ...||.||+.|.+.-..
T Consensus        15 gRmIPCkHvFCydCa~~~~~~~-----------~k~Cp~C~~~V~rVe~~   53 (101)
T 3vk6_A           15 GRMIPCKHVFCYDCAILHEKKG-----------DKMCPGCSDPVQRIEQC   53 (101)
T ss_dssp             EEEETTCCEEEHHHHHHHHHTT-----------CCBCTTTCCBCSEEEEE
T ss_pred             eeeccccccHHHHHHHHHHhcc-----------CCCCcCcCCeeeeeEEe
Confidence            3567999999999998874332           12499999999987654

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=88.61  E-value=0.15  Score=48.61  Aligned_cols=53  Identities=13%  Similarity=0.153  Sum_probs=40.5

Q ss_pred             CCCcchhhhhhhhcccccc-cCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCC--cccccccc
Q 011309          290 SDDADTCAVCLERACTVAA-EGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPL--CRHGIVSF  352 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~-~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~--CR~~I~~~  352 (489)
                      ....-.|.+|++..-+... ..|||.||..|+.......          +...||+  ||..+..-
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~----------~~~~CPvtGCr~~l~~~  233 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGY----------TTRDCPQAACSQVVSMR  233 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTC----------SCEECSGGGCSCEECGG
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhC----------CCCCCCcccccCcCchh
Confidence            3445679999999988776 5999999999998885321          2346999  99977543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	489
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-29
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-23
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-22
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-24
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-20
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-21
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-20
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-12
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-15
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	4e-14
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-13
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-11
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-09
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.004
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	9e-12
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-11
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.001
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.001
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	9e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-06
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-08

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 4e-29
 Identities = 61/236 (25%), Positives = 88/236 (37%), Gaps = 22/236 (9%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  A+  G     K LL         +      +PLH AA  GH E+   LL+N A VN+
Sbjct: 4   LHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS 133
           +              +T LH AA  GH   ++L++ +                       
Sbjct: 62  KAK----------DDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGH 111

Query: 134 VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL 193
           V++                 G T LH+AA  G     +LLL+  A+ +A   +       
Sbjct: 112 VETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN------- 164

Query: 194 IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
              G TPLH A    NL   ++LL RG S  S   NG+ PL +A    +  +   L
Sbjct: 165 ---GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.3 bits (246), Expect = 3e-23
 Identities = 61/271 (22%), Positives = 95/271 (35%), Gaps = 45/271 (16%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L  AA+ G    A++LL+ +         G   +PLH A    + +IV LLL  G   +S
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNG--LTPLHVAVHHNNLDIVKLLLPRGGSPHS 193

Query: 74  RNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNT---QIEGDRGD 130
             +          +G T LH AA    V   R ++     +    V       +    G 
Sbjct: 194 PAW----------NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGH 243

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTS 190
              V     +       N     G+T LH+ A  G+     +L+     V A T    T 
Sbjct: 244 AEMVALLLSKQ---ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 300

Query: 191 MDLIGA-----------------------GSTPLHFAACGGNLKCCQVLLSRGASRMSLN 227
           + +                          G +PLH AA  G+     +LL  GAS   ++
Sbjct: 301 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 360

Query: 228 CNGWLPLDVARMWGRH----WLEPLLAPSSD 254
            +G  PL +A+  G       L+ +   +S 
Sbjct: 361 SDGTTPLAIAKRLGYISVTDVLKVVTDETSF 391

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.0 bits (240), Expect = 2e-22
 Identities = 57/218 (26%), Positives = 77/218 (35%), Gaps = 66/218 (30%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
           PLH A+  GH  IV  LL+ GA  N  N              T LH AA  GH    + +
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNV----------KVETPLHMAARAGHTEVAKYL 52

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
                                     +++K         VN  A    T LH AA  G+ 
Sbjct: 53  --------------------------LQNKAK-------VNAKAKDDQTPLHCAARIGHT 79

Query: 168 DCVQLLLDLHANVSAVTFHYGTSMD-----------------------LIGAGSTPLHFA 204
           + V+LLL+ +AN +  T    T +                        +   G TPLH A
Sbjct: 80  NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVA 139

Query: 205 ACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
           A  G ++  ++LL R A   +   NG  PL VA     
Sbjct: 140 AKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNN 177

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.0 bits (196), Expect = 7e-17
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 155 ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
           +T LH+A+  G+   V+ LL   A+ +                 TPLH AA  G+ +  +
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVK----------VETPLHMAARAGHTEVAK 50

Query: 215 VLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
            LL   A   +   +   PL  A   G   +  LL
Sbjct: 51  YLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 4e-15
 Identities = 34/155 (21%), Positives = 51/155 (32%), Gaps = 43/155 (27%)

Query: 90  TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 149
           T LH A+  GH+  ++ +                          ++            N 
Sbjct: 2   TPLHVASFMGHLPIVKNL--------------------------LQRGAS-------PNV 28

Query: 150 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
           +     T LHMAA  G+ +  + LL   A V+A                TPLH AA  G+
Sbjct: 29  SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD----------DQTPLHCAARIGH 78

Query: 210 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
               ++LL   A+       G  PL +A   G   
Sbjct: 79  TNMVKLLLENNANPNLATTAGHTPLHIAAREGHVE 113

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 62/207 (29%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
             +  G +     L  AA++G      +LL         +  G   +PLH  A +GH  +
Sbjct: 226 AESVQGVTP----LHLAAQEGHAEMVALLLSKQANGNLGNKSG--LTPLHLVAQEGHVPV 279

Query: 61  VALLLENGADVNSRN-----------------------YCGQVTRADYLSGRTALHFAAV 97
             +L+++G  V++                                A    G + LH AA 
Sbjct: 280 ADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 339

Query: 98  NGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITA 157
            GH   + L++                          K+           N+ +  G T 
Sbjct: 340 QGHTDIVTLLL--------------------------KNGAS-------PNEVSSDGTTP 366

Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVT 184
           L +A   GY     +L  +    S V 
Sbjct: 367 LAIAKRLGYISVTDVLKVVTDETSFVL 393

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 98.9 bits (245), Expect = 9e-24
 Identities = 47/200 (23%), Positives = 71/200 (35%), Gaps = 10/200 (5%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           N  L  A      ++V  LLE GA+VN +         +   G T LH A        + 
Sbjct: 6   NHLLIKAVQNEDVDLVQQLLEGGANVNFQ---------EEEGGWTPLHNAVQMSREDIVE 56

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG 165
           L++      V  +              SVK      +    VN+    G TA   AA+ G
Sbjct: 57  LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYG 116

Query: 166 YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR-GASRM 224
               ++ L    ANV+           L   G+T L  AA  G+++  ++LL   GA   
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN 176

Query: 225 SLNCNGWLPLDVARMWGRHW 244
           + +  G   L  A +     
Sbjct: 177 ACDNMGRNALIHALLSSDDS 196

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.9 bits (214), Expect = 9e-20
 Identities = 49/212 (23%), Positives = 74/212 (34%), Gaps = 18/212 (8%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           AA  G     K+ L     + +   +G   +    AA  G  + +  L + GA+VN R  
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYG--FTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADF---VPSVPFEVMNTQIEGDRGDGSS 133
             +        G TAL  AA  GHV  +++++ +    V +      N  I        S
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 134 VKSKCDQSALSK--FVNKAADGGITALHMAALNGYFDCVQLLLDLH-ANVSAVTFHYGTS 190
                    L     VN   + G T L +A    +   VQ LL+     ++         
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSD---- 252

Query: 191 MDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS 222
                 G T L  A      K  ++L  RGAS
Sbjct: 253 ------GKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 4e-11
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 45/172 (26%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN---EIVALLLENGAD 70
           L+ AA  G     K+LLD            G N+ +H   +   +    I  LLL++GAD
Sbjct: 152 LMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211

Query: 71  VNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGD 130
           VN R             G+T L  A    H+  ++ ++                      
Sbjct: 212 VNVRGE----------RGKTPLILAVEKKHLGLVQRLLE--------------------- 240

Query: 131 GSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSA 182
               +   +       +N     G TAL +A         +LL    A+   
Sbjct: 241 ----QEHIE-------INDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 8e-10
 Identities = 28/95 (29%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 150 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
           AA      L  A  N   D VQ LL+  ANV+      G          TPLH A     
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGW---------TPLHNAVQMSR 51

Query: 210 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
               ++LL  GA  +    NG  P  +A + G   
Sbjct: 52  EDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVK 86

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 2e-07
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNS 73
           L+ A         + LL+        +   G  + L  A      +I  LL + GA  + 
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDG-KTALLLAVELKLKKIAELLCKRGASTDC 281

Query: 74  RN 75
            +
Sbjct: 282 GD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 30/159 (18%), Positives = 53/159 (33%), Gaps = 42/159 (26%)

Query: 86  LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSK 145
           +     L  A  N  V  ++ ++                      G++V  + +      
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLLE--------------------GGANVNFQEE------ 36

Query: 146 FVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA 205
                 +GG T LH A      D V+LLL   A+      +  T              AA
Sbjct: 37  ------EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF----------LLAA 80

Query: 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
             G++K  ++ LS+GA     +  G+     A ++G+  
Sbjct: 81  IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVK 119

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 92.8 bits (229), Expect = 1e-21
 Identities = 33/203 (16%), Positives = 68/203 (33%), Gaps = 22/203 (10%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ--VTRADYLSGRTALHFAAVNGHVRC 103
           N+PLH+  +  + E+V  L+++G++    +  G+  + +A                    
Sbjct: 108 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 167

Query: 104 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQ------SALSKFVNKAADGGITA 157
             L++ D +       +     G  G  ++ K   D          ++ +    +   + 
Sbjct: 168 PCLILEDSMNRTILHHI-IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226

Query: 158 LHMAALNGYFDCVQLLLDLH---ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQ 214
            +          ++ L         ++A   +          G T L+ AA  GN+    
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSN----------GDTCLNIAARLGNISIVD 276

Query: 215 VLLSRGASRMSLNCNGWLPLDVA 237
            LL  GA     N +G  P+D  
Sbjct: 277 ALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 10/51 (19%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAA 96
           ++ L+ AA  G+  IV  LL+ GAD    N           SG   + F A
Sbjct: 260 DTCLNIAARLGNISIVDALLDYGADPFIANK----------SGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (105), Expect = 1e-05
 Identities = 16/113 (14%), Positives = 38/113 (33%), Gaps = 9/113 (7%)

Query: 132 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSM 191
                    +  S   ++         H++  +   +      +   N++     +G   
Sbjct: 51  IQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHG--- 107

Query: 192 DLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
                 +TPLH+     NL+  + L+  G++R+  +  G   L  A     ++
Sbjct: 108 ------NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNY 154

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 13/102 (12%), Positives = 34/102 (33%), Gaps = 14/102 (13%)

Query: 8   SASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLEN 67
           ++      +AA+    +    ++       +  T     S  +    +  + I+  L   
Sbjct: 187 TSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEK-ESKPNDKNGERKDSILENLDLK 245

Query: 68  ---GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
                 +N+++           +G T L+ AA  G++  +  
Sbjct: 246 WIIANMLNAQDS----------NGDTCLNIAARLGNISIVDA 277

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 8e-20
 Identities = 48/228 (21%), Positives = 76/228 (33%), Gaps = 34/228 (14%)

Query: 46  NSPLHFAAAKGHNEIVA-LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           N  +   A  G  E +   +L + +     +             RTALH+A   GH   +
Sbjct: 4   NLMVCNLAYSGKLEELKESILADKSLATRTDQ----------DSRTALHWACSAGHTEIV 53

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
             ++   VP    +                +           VN     G T LH AA  
Sbjct: 54  EFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASK 113

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-----------------------GSTPL 201
              +   +LL+  AN  A   +  T+M    A                       G+TPL
Sbjct: 114 NRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPL 173

Query: 202 HFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           H A     ++  ++L+S+GAS    N     PL VA+      L+ ++
Sbjct: 174 HLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKGGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (156), Expect = 2e-12
 Identities = 38/190 (20%), Positives = 64/190 (33%), Gaps = 56/190 (29%)

Query: 28  MLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS 87
            LL     +   +  G   +PLH+AA+K  +EI  +LLE GA+ +++++           
Sbjct: 88  ALLGKGAQVNAVNQNG--CTPLHYAASKNRHEIAVMLLEGGANPDAKDH----------Y 135

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
             TA+H AA  G+++ I                                           
Sbjct: 136 EATAMHRAAAKGNLKMI---------------------------------HILLYYKAST 162

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           N     G T LH+A      +  +LL+   A++                  TPL  A  G
Sbjct: 163 NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKE----------EKTPLQVAK-G 211

Query: 208 GNLKCCQVLL 217
           G     + ++
Sbjct: 212 GLGLILKRMV 221

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.1 bits (196), Expect = 1e-17
 Identities = 38/236 (16%), Positives = 59/236 (25%), Gaps = 45/236 (19%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           ++ LH A    H   +  LL   A     +            G+TALH AA+ G    + 
Sbjct: 10  DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND-------LGQTALHLAAILGEASTVE 62

Query: 106 LVVADFVPSVPFEVMNTQIEGD--------------RGDGSSVKSKCDQSALSKFVNKAA 151
            + A     +  E                       +   S  +   D            
Sbjct: 63  KLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

Query: 152 DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLI----------------- 194
                A   +  N   +      D    + A  +   T + +                  
Sbjct: 123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA 182

Query: 195 -------GAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
                    G TPLH A         ++LL  GA   +    G  PL  A +    
Sbjct: 183 DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.3 bits (173), Expect = 2e-14
 Identities = 40/224 (17%), Positives = 69/224 (30%), Gaps = 21/224 (9%)

Query: 3   NSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVA 62
           N  G +A    L  AA  G+    + L              G ++ LH A     +    
Sbjct: 42  NDLGQTA----LHLAAILGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCAC 95

Query: 63  LLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFV-----PSVPF 117
           +LL+             +T++   +  T+   AAV+                        
Sbjct: 96  VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAEN 155

Query: 118 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 177
              +T +        +   +  + A +         G T LH+A        ++LLL   
Sbjct: 156 YDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG 215

Query: 178 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           A+ +A  +           G TPL  A    N    ++L + GA
Sbjct: 216 ADPTARMYG----------GRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCC 213
           G TALH+A ++ +   +  LL   A    +             G T LH AA  G     
Sbjct: 9   GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL-------GQTALHLAAILGEASTV 61

Query: 214 QVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           + L + GA  +     G   L +A     H    +L
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.6 bits (122), Expect = 5e-08
 Identities = 31/146 (21%), Positives = 47/146 (32%), Gaps = 40/146 (27%)

Query: 88  GRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFV 147
           G TALH A ++ H   +  ++                                SA  +++
Sbjct: 9   GDTALHLAVIHQHEPFLDFLL------------------------------GFSAGHEYL 38

Query: 148 NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           +   D G TALH+AA+ G    V+ L    A V        T++          H A   
Sbjct: 39  DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL----------HLACRV 88

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLP 233
               C  VLL    S      + +L 
Sbjct: 89  RAHTCACVLLQPRPSHPRDASDTYLT 114

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.8 bits (99), Expect = 5e-05
 Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%)

Query: 18  ARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
                    ++LL            G   +PL  A  + +  +  LL  +GA   
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGG--RTPLGSALLRPNPILARLLRAHGAPEP 252

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 81.1 bits (199), Expect = 2e-17
 Identities = 28/206 (13%), Positives = 45/206 (21%), Gaps = 42/206 (20%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRN-YCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
            +     K   ++  LL    A  N              +        AA+ G    +  
Sbjct: 49  HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDT 108

Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
           +                          + S          V         A  +AA NG+
Sbjct: 109 LC-----------------------LLLTSDEI-------VKVIQAENYQAFRLAAENGH 138

Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA---SR 223
              +  L +L                +          AA  G+L     L        + 
Sbjct: 139 LHVLNRLCELAPTEIMA--------MIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 190

Query: 224 MSLNCNGWLPLDVARMWGRHWLEPLL 249
           M    N +     A   G H +   L
Sbjct: 191 MIQAENYYAFRWAAVGRGHHNVINFL 216

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 79.2 bits (194), Expect = 9e-17
 Identities = 31/239 (12%), Positives = 55/239 (23%), Gaps = 42/239 (17%)

Query: 1   MGNSFGCSASGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEI 60
           +  +    A       AA +G       L +  P                 AA  GH  +
Sbjct: 121 VIQAENYQA----FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHV 176

Query: 61  VALLLENGADVNSRN--------------YCGQVTRADYL-----SGRTALHFAAVNGHV 101
           +  L E      +                  G     ++L         A       G  
Sbjct: 177 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEK 236

Query: 102 RCIR--LVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 159
                     + +  +      +  +G                ++K         +  L 
Sbjct: 237 YVNPFIARHVNRLKEMHDAFKLSNPDGV------------FDLVTKSECLQGFYMLRNLI 284

Query: 160 MAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
                   D ++ LL +    +           + G  +  L  A   GN   C +LLS
Sbjct: 285 RRNDEVLLDDIRFLLSIPGIKALAPTA-----TIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.9 bits (183), Expect = 2e-15
 Identities = 35/250 (14%), Positives = 53/250 (21%), Gaps = 33/250 (13%)

Query: 14  LVSAARDG--DFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADV 71
              AA  G    ++   LL  +  + K             AA  GH  ++  L E     
Sbjct: 94  CFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN-YQAFRLAAENGHLHVLNRLCELAPTE 152

Query: 72  NSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG 131
                  +           A   AA NGH+  +  +           +        R   
Sbjct: 153 IMAMIQAE--------NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWA- 203

Query: 132 SSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD------------LHAN 179
                      +  F+         A       G       +                +N
Sbjct: 204 ---AVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSN 260

Query: 180 VSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCN-----GWLP 233
              V      S  L G      L        L   + LLS    +               
Sbjct: 261 PDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANEL 320

Query: 234 LDVARMWGRH 243
           L +A   G  
Sbjct: 321 LRLALRLGNQ 330

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.4 bits (153), Expect = 1e-11
 Identities = 24/178 (13%), Positives = 41/178 (23%), Gaps = 18/178 (10%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSP-LHFAAAKGHNEIVALLLENGADVN 72
              AA +G       L +  P  A               A  +GH+ ++  LL+    + 
Sbjct: 165 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 224

Query: 73  SRNYCGQ------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM 120
                                         A   +  +G      LV         + + 
Sbjct: 225 YAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGV---FDLVTKSECLQGFYMLR 281

Query: 121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG--GITALHMAALNGYFDCVQLLLDL 176
           N     D      ++       +      A         L +A   G      LLL +
Sbjct: 282 NLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.4 bits (153), Expect = 2e-11
 Identities = 21/159 (13%), Positives = 34/159 (21%), Gaps = 17/159 (10%)

Query: 146 FVNKAADGGITALHMAALNGYFD---CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLH 202
             +K          +AA+ G       + LLL     V  +                   
Sbjct: 82  DAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE----------NYQAFR 131

Query: 203 FAACGGNLKCCQVLLSRGASRMSLNCN--GWLPL-DVARMWGRHWLEPLL-APSSDAVMP 258
            AA  G+L     L     + +        +      A     H L  L     ++A   
Sbjct: 132 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 191

Query: 259 RFHPSNYLSLPLLSVLNVARECGLLSSTTSSSDDADTCA 297
               + Y                 L         A+   
Sbjct: 192 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHE 230

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 0.001
 Identities = 13/63 (20%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 14  LVSAARDGDFVEAKMLLDC---NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGAD 70
           L+    +    + + LL            +  G  N  L  A   G+    ALLL     
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP-S 341

Query: 71  VNS 73
           V +
Sbjct: 342 VLA 344

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 77.1 bits (188), Expect = 3e-16
 Identities = 53/258 (20%), Positives = 95/258 (36%), Gaps = 29/258 (11%)

Query: 10  SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
            G   ++A   GD  E   LL+    +   +  G   + LH A    + ++V  L+ENGA
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGA 97

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 129
           ++N  +  G +      S         +      +  V ++    +         E  + 
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157

Query: 130 DGSSV-----------------KSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQL 172
           + +                    ++   ++      + A  G TALH+AA  GY + ++L
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 173 LLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWL 232
           L+    +V+   +           G TPLH AA  G  + C++L+       ++N  G  
Sbjct: 218 LIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQT 267

Query: 233 PLDVARMWGRHWLEPLLA 250
             DVA      +LE L  
Sbjct: 268 AFDVADEDILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.5 bits (171), Expect = 4e-14
 Identities = 43/216 (19%), Positives = 69/216 (31%), Gaps = 27/216 (12%)

Query: 44  GLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRC 103
              +    A + G  E V  LLE GAD+N  N            G TALH A ++ +V  
Sbjct: 39  DDGAVFLAACSSGDTEEVLRLLERGADINYANVD----------GLTALHQACIDDNVDM 88

Query: 104 IRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAAL 163
           ++ +V +       +               +       +    V      G T L +A  
Sbjct: 89  VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148

Query: 164 NGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-----------------GSTPLHFAAC 206
               + +Q  ++               + L  A                 G T LH AA 
Sbjct: 149 EAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA 208

Query: 207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
            G  +  ++L+         + +GW PL  A  WG+
Sbjct: 209 KGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK 244

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.3 bits (116), Expect = 4e-07
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 149 KAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGG 208
           K           A  +G  + V  LL+  A+++               G T LH A    
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVD----------GLTALHQACIDD 84

Query: 209 NLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           N+   + L+  GA+    +  GW+PL  A   G   +   L
Sbjct: 85  NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 20/69 (28%)

Query: 197 GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAV 256
                  A   G+ +    LL RGA     N +G   L  A +     +   L  +   +
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI 99

Query: 257 MPRFHPSNY 265
               +    
Sbjct: 100 NQPDNEGWI 108

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (168), Expect = 4e-14
 Identities = 50/229 (21%), Positives = 80/229 (34%), Gaps = 42/229 (18%)

Query: 46  NSPLHFAAAKGHNEIVALLL----ENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
           ++PLH A  +G+   V  L+    + G +++  N             +T LH A +    
Sbjct: 4   DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------LRQTPLHLAVITTLP 53

Query: 102 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADG----GITA 157
             +RL+V      +  +           +  S          +       +     G+TA
Sbjct: 54  SVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA 113

Query: 158 LHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA--------------------- 196
           LH+A      + VQLLL+  A++ AV    G S  +                        
Sbjct: 114 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ 173

Query: 197 ---GSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGR 242
              GS+ LH A+  G L   + L+  GA     NC+   PL VAR    
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRV 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 1e-10
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 12/93 (12%)

Query: 13  RLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVN 72
            L+ A  +      ++LL     +      G  +S LH A+ +G   +V  L+ +GAD +
Sbjct: 147 PLIHAVENNSLSMVQLLLQHGANVNAQMYSG--SSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 73  SRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +N              T L  A     +  +R
Sbjct: 205 LKNC----------HNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 152 DGGITALHMAALNGYFDCVQLLLDLH----ANVSAVTFHYGTSMDLIGAGSTPLHFAACG 207
           + G T LH+A + G    V  L++L       +                  TPLH A   
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNL----------RQTPLHLAVIT 50

Query: 208 GNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH 243
                 ++L++ GAS M+L+ +G     +A      
Sbjct: 51  TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSP 86

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 197 GSTPLHFAACGGNLKCCQVLLS----RGASRMSLNCNGWLPLDVARMWGRHW 244
           G TPLH A   GNL     L++     G      N     PL +A +     
Sbjct: 3   GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 54

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC 212
           G +ALH A+  G    V+ L+   A+ S    H            TPL  A     +  
Sbjct: 177 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCH----------NDTPLMVARSRRVIDI 225

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 41/223 (18%), Positives = 69/223 (30%), Gaps = 41/223 (18%)

Query: 46  NSPLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           N PLH A  +     V  LL    + +  ++            GR  LH++         
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQ----------DGRIPLHWSVSFQAHEIT 50

Query: 105 RLVVA-----DFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH 159
             +++     +                       V        L   +NK  + G+T LH
Sbjct: 51  SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLH 110

Query: 160 MAALNGYFDCVQLLLD---------------LHANVSAVTFHYGTSMDLIG--------- 195
           +A    +F+  Q L++               LH   S  +      +  +G         
Sbjct: 111 LAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 170

Query: 196 AGSTPLHFAACGGNLKCCQVLLSR-GASRMSLNCNGWLPLDVA 237
            G TPL  A   G+     +L+ + GA    ++  G    DVA
Sbjct: 171 QGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 213

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 9e-08
 Identities = 39/235 (16%), Positives = 69/235 (29%), Gaps = 44/235 (18%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A  + +F + + LL   P L       G   PLH++ +   +EI + LL    +VN  +Y
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDG-RIPLHWSVSFQAHEITSFLLSKMENVNLDDY 65

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDR-------- 128
                   +    +  +   V            + + +     ++  +            
Sbjct: 66  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 125

Query: 129 --GDGSSVKSKCDQSAL-------------------SKFVNKAADGGITALHMAALNGYF 167
             G    +K K +Q  L                      VN     G T L  A   G+ 
Sbjct: 126 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHG 185

Query: 168 DCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGA 221
           D   LL++ + A    V             G+     A    N +  +  L+   
Sbjct: 186 DAAVLLVEKYGAEYDLVDNK----------GAKAEDVAL---NEQVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
            +PL  A A+GH +   LL+E  GA+ +  +            G  A   A      +  
Sbjct: 173 WTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN----------KGAKAEDVALNEQVKKFF 222

Query: 105 RLVVAD 110
              V D
Sbjct: 223 LNNVVD 228

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 2e-13
 Identities = 41/214 (19%), Positives = 70/214 (32%), Gaps = 29/214 (13%)

Query: 46  NSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV 101
           +S LH A          E++  +  + A +N +N             +T LH A +    
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN----------LQQTPLHLAVITNQP 52

Query: 102 RCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVK------SKCDQSALSKFVNKAADGGI 155
                ++         +           +   +         C    L   +      G 
Sbjct: 53  EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 112

Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
           T LH+A+++GY   V+LL+ L A+V+A     G          T LH A    N     +
Sbjct: 113 TCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------RTALHLAVDLQNPDLVSL 163

Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL 249
           LL  GA    +   G+ P  +        ++  L
Sbjct: 164 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 197

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 6e-05
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 11/92 (11%)

Query: 17  AARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNY 76
           A+  G     ++L+     +       G  + LH A    + ++V+LLL+ GADVN   Y
Sbjct: 118 ASIHGYLGIVELLVSLGADVNAQEPCNG-RTALHLAVDLQNPDLVSLLLKCGADVNRVTY 176

Query: 77  CGQVTRADYLSGRTALHFAAVNGHVRCIRLVV 108
                      G +           R  + + 
Sbjct: 177 ----------QGYSPYQLTWGRPSTRIQQQLG 198

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 4/25 (16%), Positives = 7/25 (28%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD 70
            SP      +    I   L +   +
Sbjct: 179 YSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 18/95 (18%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 154 GITALHMAALNGYFDC----VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
           G + LH+A ++         ++ +    A ++                 TPLH A     
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNL----------QQTPLHLAVITNQ 51

Query: 210 LKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
            +  + LL  G      +  G  PL +A   G   
Sbjct: 52  PEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLA 86

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 64.0 bits (154), Expect = 2e-12
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 33/209 (15%)

Query: 59  EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR-LVVADFVPSVPF 117
           ++++ LL  GA++N+          D  +G T+LH AA        + L+ A    +   
Sbjct: 3   QVISDLLAQGAELNATM--------DK-TGETSLHLAARFARADAAKRLLDAGADANSQD 53

Query: 118 EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH 177
               T +       +    +      +  +N     G T L +AA       V+ L+   
Sbjct: 54  NTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITAD 113

Query: 178 ANVSAVTFHYGTSMDLIGAG-----------------------STPLHFAACGGNLKCCQ 214
           A+++A      T++    A                         TPL  AA  G+ +  +
Sbjct: 114 ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASK 173

Query: 215 VLLSRGASRMSLNCNGWLPLDVARMWGRH 243
            LL   A+R   +    LP DVA     H
Sbjct: 174 ALLDNFANREITDHMDRLPRDVASERLHH 202

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 2e-06
 Identities = 33/195 (16%), Positives = 56/195 (28%), Gaps = 34/195 (17%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            + LH AA     +    LL+ GAD NS++  G+      ++      F  +  +     
Sbjct: 24  ETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNL 83

Query: 106 LVVADFVPSVPFEVMNTQIEGDRGDGSS------VKSKCDQSALSKFV------------ 147
                   +         IEG   D  +            ++AL                
Sbjct: 84  NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 143

Query: 148 ------NKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPL 201
                 +   D   T L +AA  G ++  + LLD  AN                    P 
Sbjct: 144 MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHM----------DRLPR 193

Query: 202 HFAACGGNLKCCQVL 216
             A+   +    ++L
Sbjct: 194 DVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 19/76 (25%), Positives = 24/76 (31%), Gaps = 9/76 (11%)

Query: 169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC 228
            +  LL   A ++A     G          T LH AA        + LL  GA   S + 
Sbjct: 4   VISDLLAQGAELNATMDKTG---------ETSLHLAARFARADAAKRLLDAGADANSQDN 54

Query: 229 NGWLPLDVARMWGRHW 244
            G  PL  A       
Sbjct: 55  TGRTPLHAAVAADAMG 70

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 63.6 bits (153), Expect = 8e-12
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
            +P+  AA +G  E+V  L++ GA V + +           +  TA   A  N H   + 
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDA----------TDHTARQLAQANNHHNIVD 271

Query: 106 L 106
           +
Sbjct: 272 I 272

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 61.7 bits (148), Expect = 3e-11
 Identities = 41/243 (16%), Positives = 70/243 (28%), Gaps = 54/243 (22%)

Query: 46  NSPLHFAAAKGHNEIVALLLEN--------GADVNSRNYCGQ------------------ 79
            + LH+ A+    E    L+ +        GADVN+ +                      
Sbjct: 34  RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYL 93

Query: 80  -----VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSS- 133
                       S R+ALH AA N     +  ++         E ++          +  
Sbjct: 94  MKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHN 153

Query: 134 -------------VKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANV 180
                         K        +   +     G TALH AA       V+ L+    + 
Sbjct: 154 EGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN 213

Query: 181 SAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMW 240
                  G          TP+  AA  G ++    L+ +GAS  +++        +A+  
Sbjct: 214 KDKQDEDGK---------TPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQAN 264

Query: 241 GRH 243
             H
Sbjct: 265 NHH 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 56.3 bits (134), Expect = 2e-09
 Identities = 24/173 (13%), Positives = 43/173 (24%), Gaps = 15/173 (8%)

Query: 50  HFAAAKGHNEIVALLLENGADVNSRNYCGQVTR-----ADYLSGRTALHFAAVNGHVRCI 104
           H AAA     ++  +L +           +          +  GR  +  A +       
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK 171

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
                            T +       +    K          +K  + G T + +AA  
Sbjct: 172 VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE 231

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL 217
           G  + V  L+   A+V AV               T    A    +     +  
Sbjct: 232 GRIEVVMYLIQQGASVEAVDAT----------DHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 51.3 bits (121), Expect = 9e-08
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 12/67 (17%)

Query: 47  SPLHFA-AAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIR 105
           SP+     A G   I   +     ++    +            RT LH+ A N       
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSE 50

Query: 106 LVVADFV 112
            ++    
Sbjct: 51  DLIVHEA 57

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 26/172 (15%), Positives = 51/172 (29%), Gaps = 20/172 (11%)

Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
             LH  A  G +   + +     N+                  T LH+ A   + +  + 
Sbjct: 4   IKLHTEA-AGSYAITEPITRESVNIIDPRH-----------NRTVLHWIASNSSAEKSED 51

Query: 216 LL--------SRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNYLS 267
           L+        + GA   +++C+   PL +A +  R  L   L  +               
Sbjct: 52  LIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL 111

Query: 268 LPLLSVLNVARECGLLSSTTSSSDDADTCAVCLERACTVAAEGCRHELCVRC 319
               +  +      +L+ST    D  +     +     VA    R ++    
Sbjct: 112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 163

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 19/113 (16%), Positives = 32/113 (28%), Gaps = 4/113 (3%)

Query: 154 GITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGA-GSTPLHFAACGGNLKC 212
             T LH  A N   +  + L+   A         G  ++ +    +TPL  A      + 
Sbjct: 33  NRTVLHWIASNSSAEKSEDLIVHEAKECI---AAGADVNAMDCDENTPLMLAVLARRRRL 89

Query: 213 CQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPSSDAVMPRFHPSNY 265
              L+  GA     N +    L  A       +   +  S+            
Sbjct: 90  VAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRN 142

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 14  LVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLE 66
           ++ AA++G       L+     +         ++    A A  H+ IV +   
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGASVEAVDATD--HTARQLAQANNHHNIVDIFDR 275

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (146), Expect = 9e-12
 Identities = 34/172 (19%), Positives = 56/172 (32%), Gaps = 21/172 (12%)

Query: 45  LNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCI 104
           L   L  AA  G ++ V +L+ NGA   +              G + LH AA  GH    
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDWL-----------GTSPLHLAAQYGHFSTT 50

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
            +++   V       ++                         VN      +TALH A  +
Sbjct: 51  EVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEH 110

Query: 165 GYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL 216
            + + V+LL+   A+V   +              T    +   GN    ++L
Sbjct: 111 NHQEVVELLIKYGADVHTQSKF----------CKTAFDISIDNGNEDLAEIL 152

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (142), Expect = 3e-11
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 23/152 (15%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRAD---------------------- 84
           + L  AAA+G  E +  LL+N  +VN++N  G+                           
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 85  YLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALS 144
             +G   +H AA  G +  ++ ++         +               ++        +
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT 122

Query: 145 KFVNKAAD-GGITALHMAALNGYFDCVQLLLD 175
                  +  G TA  +A L G  + V L+  
Sbjct: 123 ASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 9e-04
 Identities = 14/89 (15%), Positives = 28/89 (31%)

Query: 156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV 215
             L  AA  G  + +  LL  + NV+A      T++ ++  G+  +              
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 216 LLSRGASRMSLNCNGWLPLDVARMWGRHW 244
             +  A        G+L      +  +  
Sbjct: 63  DRTGFAVIHDAARAGFLDTLQTLLEFQAD 91

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.001
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 46  NSPLHFAAAKGHNEIVALLLENG 68
           ++    A   G NE+V+L+  NG
Sbjct: 134 DTACDLARLYGRNEVVSLMQANG 156

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (140), Expect = 5e-11
 Identities = 19/142 (13%), Positives = 37/142 (26%), Gaps = 7/142 (4%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---GHVRCI 104
            L  A        +     +G D+  +               TALH A  +     +  +
Sbjct: 9   SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHE----PDETALHLAVRSVDRTSLHIV 64

Query: 105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN 164
             +V +           +          + +           +  A + G T L +A   
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 165 GYFDCVQLLLDLHANVSAVTFH 186
            +  C +LL    +       H
Sbjct: 125 KHEHCEELLTQALSGRFNSHVH 146

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 46  NSPLHFAAAKGHNEIVALLLENGAD 70
            +PL  A    H     LL +  + 
Sbjct: 115 ETPLDIAKRLKHEHCEELLTQALSG 139

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 9/99 (9%)

Query: 151 ADGG--ITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA--- 205
           AD    + +L  A        +        +++                 T LH A    
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEP----DETALHLAVRSV 56

Query: 206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHW 244
              +L     L+    +       G   L    +     
Sbjct: 57  DRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 95

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 6e-09
 Identities = 29/172 (16%), Positives = 45/172 (26%), Gaps = 23/172 (13%)

Query: 48  PLHFAAAKGHNEIVALLLE-NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
            L  AAA+G  + V  LL       ++ N  G+      + G TA+    +         
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQ 64

Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
             +   P                                 VN     G   +H+A   G+
Sbjct: 65  DTSGTSPVHDAARTGFLDT-----------LKVLVEHGADVNVPDGTGALPIHLAVQEGH 113

Query: 167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS 218
              V  L    +++                G TPL  A   G      +L  
Sbjct: 114 TAVVSFLAA-ESDLHRRDAR----------GLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 27/166 (16%), Positives = 46/166 (27%), Gaps = 13/166 (7%)

Query: 10  SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGA 69
           +G+RL  AA  GD  E + LL             G  +            +  L      
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASP 61

Query: 70  DVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRG 129
           +V   +    V  A        L     +G    +          +  +  +T +     
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 130 DGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLD 175
             S              +++    G+T L +A   G  D V +L  
Sbjct: 122 AESD-------------LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 9e-09
 Identities = 15/134 (11%), Positives = 35/134 (26%), Gaps = 7/134 (5%)

Query: 47  SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRL 106
           + L  ++ +G  ++V  ++    D +  N  G     +          A     V+ +  
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNA-------VCAGHTEIVKFLVQ 55

Query: 107 VVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY 166
              +   +               +    K   +  A    +  +              GY
Sbjct: 56  FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY 115

Query: 167 FDCVQLLLDLHANV 180
             C Q L  +   +
Sbjct: 116 TQCSQFLYGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 4e-06
 Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 7/132 (5%)

Query: 90  TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNK 149
             L  +++ G    ++ ++ +                +       +           VN 
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 150 AADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGN 209
           A   G T LH AA        + L++  A V A+T+            +         G 
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQ-------TAADKCEEMEEGY 115

Query: 210 LKCCQVLLSRGA 221
            +C Q L     
Sbjct: 116 TQCSQFLYGVQE 127

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 3e-08
 Identities = 23/128 (17%), Positives = 38/128 (29%), Gaps = 10/128 (7%)

Query: 48  PLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLV 107
            L  AAA+G  E V  LLE GA+ N+ N  G+      + G   +    +          
Sbjct: 6   WLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD 65

Query: 108 VADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF 167
            A     V        +           +          ++     G   + +A   G+ 
Sbjct: 66  PATLTRPVHDAAREGFL----------DTLVVLHRAGARLDVRDAWGRLPVDLAEELGHR 115

Query: 168 DCVQLLLD 175
           D  + L  
Sbjct: 116 DVARYLRA 123

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	489
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	100.0
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.98
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.98
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.95
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.94
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.94
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.91
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.91
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.9
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	97.94
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	97.81
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	97.4
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	97.35
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	97.24
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	97.17
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	97.09
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	96.88
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	96.78
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	96.27
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	96.05
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	96.03
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	95.75
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	95.56
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	95.34
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	93.99
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	84.9

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.2e-36  Score=288.43  Aligned_cols=226  Identities=21%  Similarity=0.172  Sum_probs=178.2

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCccc-CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~-~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .||||+||+.|+.++|++||+.|++.... ..+..|+||||+|+..|+.++|++|+++|++++..|.          .|.
T Consensus        10 ~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~----------~g~   79 (255)
T d1oy3d_          10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER----------GGH   79 (255)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCT----------TSC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccccccc----------ccc
Confidence            58999999999999999999998875432 2233448999999999999999999999999999998          999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCc--------------hhhhhhhhhhhhhhhhccccCCCc
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDG--------------SSVKSKCDQSALSKFVNKAADGGI  155 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~--------------~~~~~~~~~~~~~~~in~~d~~G~  155 (489)
                      ||||+|+..++.+++++|++......................              ...............++.+|..|.
T Consensus        80 tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~  159 (255)
T d1oy3d_          80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH  159 (255)
T ss_dssp             CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred             hhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCc
Confidence            999999999999999999975433222111110000000000              000000111222345788999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH
Q 011309          156 TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLD  235 (489)
Q Consensus       156 TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~  235 (489)
                      ||||+|+..++.++|++|++++++.+..+..         .|.||||+|+..|+.++|++|+++|+|++.+|.+|+||||
T Consensus       160 TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~---------~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~  230 (255)
T d1oy3d_         160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPT---------CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG  230 (255)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccchhcccccccccccc---------cccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            9999999999999999999999998876543         3999999999999999999999999999999999999999


Q ss_pred             HHHHcCcHhHHHHhcCCCCC
Q 011309          236 VARMWGRHWLEPLLAPSSDA  255 (489)
Q Consensus       236 ~A~~~g~~~i~~LL~~~~~~  255 (489)
                      +|+..++.+++++|+++++.
T Consensus       231 ~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         231 SALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999887664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-33  Score=263.95  Aligned_cols=203  Identities=29%  Similarity=0.333  Sum_probs=146.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCC-CcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPC-LAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~-l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      +.+.|+.+|+.|+++.|+.+|..++. ++..+.  .|+||||+|+..|+.+++++|++.+.+....+.          .+
T Consensus         3 ~~~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~--~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~----------~~   70 (223)
T d1uoha_           3 SNLMVCNLAYSGKLEELKESILADKSLATRTDQ--DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDD----------AG   70 (223)
T ss_dssp             SSSHHHHHHHTTCHHHHHHHHHHCGGGGGCCCT--TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCT----------TC
T ss_pred             CHHHHHHHHHhCCHHHHHHHHHhCCCcCcCcCC--CCCCHHHHHHHhhhhcccccccccccccccccc----------cc
Confidence            45678888999998888888776544 333333  348999999999999999988888888877776          78


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .+++++|+..|+.+++++|++.+.+                                 ++..|..|.||||+|+..|+.+
T Consensus        71 ~~~~~~~~~~~~~~i~~~Ll~~~~d---------------------------------~~~~d~~g~tpL~~A~~~~~~e  117 (223)
T d1uoha_          71 WSPLHIAASAGRDEIVKALLGKGAQ---------------------------------VNAVNQNGCTPLHYAASKNRHE  117 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTCCCHHHHHHHHTCHH
T ss_pred             cccccccccccccchhHHHhccCce---------------------------------eEeeCCCCCchhhHHHHcCCHH
Confidence            8888888888888888888876533                                 5566667777777777777777


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPL  248 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~L  248 (489)
                      ++++|+++|++++..+..          |.||||+|+..++.+++++|++.|++++.+|.+|+||||+|+..|+.+++++
T Consensus       118 ~~~~Ll~~g~d~~~~~~~----------~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~  187 (223)
T d1uoha_         118 IAVMLLEGGANPDAKDHY----------EATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKL  187 (223)
T ss_dssp             HHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHCCCCCCCcCCC----------CCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHH
Confidence            777777777777766654          6777777777777777777777777777777777777777777777776655


Q ss_pred             hcC-CCCCCCCCCCCCCCcchhhH
Q 011309          249 LAP-SSDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       249 L~~-~~~~~~~~~~~~~~~~~pl~  271 (489)
                      |++ +++++..    +..+.+|++
T Consensus       188 LL~~Gad~~~~----d~~g~tpl~  207 (223)
T d1uoha_         188 LVSQGASIYIE----NKEEKTPLQ  207 (223)
T ss_dssp             HHHTTCCSCCC----CTTSCCHHH
T ss_pred             HHHCCCCCCCC----CCCCCCHHH
Confidence            543 4444433    444556654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-32  Score=280.44  Aligned_cols=223  Identities=27%  Similarity=0.291  Sum_probs=151.8

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC------------
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ------------   79 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~------------   79 (489)
                      ||||.||..|++++|++||++|++++..+..+  +||||+|+..|+.++|++||++|++++.++..|.            
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g--~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKV--ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCC--CCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCC--CCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCH
Confidence            79999999999999999999999998876655  9999999999999999999999999999987765            


Q ss_pred             -----------------------------------------------------------------------------ccc
Q 011309           80 -----------------------------------------------------------------------------VTR   82 (489)
Q Consensus        80 -----------------------------------------------------------------------------i~~   82 (489)
                                                                                                   -..
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence                                                                                         111


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHccCCCC------------------------------------Ccccccccccc
Q 011309           83 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV------------------------------------PFEVMNTQIEG  126 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~------------------------------------~~~~~~l~~~~  126 (489)
                      .....|.+|||+|+..|+.+++++|+..+...+                                    ..+.++++.+.
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            334578899999999999999999987654321                                    12234455555


Q ss_pred             ccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHH
Q 011309          127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  206 (489)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~  206 (489)
                      ..+....+.....   ....++..+..|.|||+.|+..++.+++++|+++|++++..+..          +.||||+|+.
T Consensus       240 ~~~~~~~~~~~~~---~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~----------~~t~L~~~~~  306 (408)
T d1n11a_         240 QEGHAEMVALLLS---KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM----------GYTPLHVASH  306 (408)
T ss_dssp             HTTCHHHHHHHHT---TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSS----------CCCHHHHHHH
T ss_pred             HhCcHhHhhhhhc---cccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccccccc----------ccccchhhcc
Confidence            4444443333222   22335566667777777777777777777777777777766654          4444444444


Q ss_pred             cCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHh
Q 011309          207 GGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLL  249 (489)
Q Consensus       207 ~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL  249 (489)
                      .++.+++++|++.|++++.+|.+|+||||+|++.|+.+++++|
T Consensus       307 ~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~L  349 (408)
T d1n11a_         307 YGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL  349 (408)
T ss_dssp             SSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            4444444444444444444444444444444444444444333

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=100.00  E-value=6.6e-33  Score=270.38  Aligned_cols=207  Identities=26%  Similarity=0.325  Sum_probs=171.7

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +|+|+.||+.|++++|++||++|++++..+.+|  +||||+|+..|+.++|++|+++|++++..+.          .+.|
T Consensus        41 ~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G--~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~----------~~~~  108 (291)
T d1s70b_          41 GAVFLAACSSGDTEEVLRLLERGADINYANVDG--LTALHQACIDDNVDMVKFLVENGANINQPDN----------EGWI  108 (291)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTC--CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHCCCCCCccCCCC--CcHHHHHHhcCCceeeeeecccccccccccc----------cccc
Confidence            589999999999999999999999998877766  9999999999999999999999999998887          8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCC---ccccccccccccCCchhhhhhhhhh------------------------hh
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVP---FEVMNTQIEGDRGDGSSVKSKCDQS------------------------AL  143 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~------------------------~~  143 (489)
                      ||++|+..++.+++++|++.+.....   .....+.++...+....+..+....                        ..
T Consensus       109 ~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (291)
T d1s70b_         109 PLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG  188 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhccc
Confidence            99999999999999999987654432   2233333333333222222221110                        00


Q ss_pred             hhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC
Q 011309          144 SKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASR  223 (489)
Q Consensus       144 ~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadv  223 (489)
                      .......+..|.||||+|+..|+.+++++|+++|++++..+..          |+||||+|+..|+.++|++||++|||+
T Consensus       189 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~----------g~TpL~~A~~~g~~~iv~lLl~~Gadv  258 (291)
T d1s70b_         189 HINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD----------GWTPLHAAAHWGKEEACRILVENLCDM  258 (291)
T ss_dssp             CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             ccccccccCCCCChhhHHHHcCChhhhcccccceecccccccC----------CCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            0113456678999999999999999999999999999998876          999999999999999999999999999


Q ss_pred             CccCCCCCcHHHHHHH
Q 011309          224 MSLNCNGWLPLDVARM  239 (489)
Q Consensus       224 n~~d~~G~TpL~~A~~  239 (489)
                      +.+|.+|+||||+|++
T Consensus       259 ~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         259 EAVNKVGQTAFDVADE  274 (291)
T ss_dssp             TCCCTTSCCTTTSCCS
T ss_pred             CCcCCCCCCHHHHHHH
Confidence            9999999999999975

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.98  E-value=2.5e-32  Score=263.47  Aligned_cols=220  Identities=21%  Similarity=0.192  Sum_probs=175.3

Q ss_pred             chHHHHHHHHcCCHHHHHHH--------hhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcc
Q 011309           10 SGERLVSAARDGDFVEAKML--------LDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVT   81 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~L--------L~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~   81 (489)
                      ..||||+||..|+.++|+.|        ++.|++++..+.+|  +||||+|+..|+.++|++||++|+|++.+|.     
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G--~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~-----  105 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE--NTPLMLAVLARRRRLVAYLMKAGADPTIYNK-----  105 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS--CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT-----
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCC--Ceeeccccccccccccccccccccccccccc-----
Confidence            45899999999999999877        56789998877655  9999999999999999999999999999998     


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHcc------CCCCCccccccccccccCCchhhhhhhhh--------hhhhhhh
Q 011309           82 RADYLSGRTALHFAAVNGHVRCIRLVVADF------VPSVPFEVMNTQIEGDRGDGSSVKSKCDQ--------SALSKFV  147 (489)
Q Consensus        82 ~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~i  147 (489)
                           .|.|||++|+..++.+++++++...      .............................        .......
T Consensus       106 -----~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (277)
T d2fo1e1         106 -----SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARK  180 (277)
T ss_dssp             -----TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGT
T ss_pred             -----cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccc
Confidence                 8999999999999999999987532      11122222222222222221111111000        0112224


Q ss_pred             ccccCCCccHHHHHHHcCCHHHHHHHH-hcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcc
Q 011309          148 NKAADGGITALHMAALNGYFDCVQLLL-DLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSL  226 (489)
Q Consensus       148 n~~d~~G~TpLh~Aa~~g~~e~v~~LL-~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~  226 (489)
                      +..+..|.||||+++..++.+++++++ ..+.+++..+..          |.||||+|+..|+.++|++|+++|+|++.+
T Consensus       181 ~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~----------g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         181 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDED----------GKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTT----------CCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccCCCCccccccccccccccccccccccccccccCCC----------CCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence            667778999999999999999998755 678888888876          999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHcCcHhHHHHhcC
Q 011309          227 NCNGWLPLDVARMWGRHWLEPLLAP  251 (489)
Q Consensus       227 d~~G~TpL~~A~~~g~~~i~~LL~~  251 (489)
                      |.+|+||||+|++.|+.+++++|.+
T Consensus       251 d~~G~T~L~~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         251 DATDHTARQLAQANNHHNIVDIFDR  275 (277)
T ss_dssp             CSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999975

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=3.5e-31  Score=249.94  Aligned_cols=186  Identities=30%  Similarity=0.340  Sum_probs=174.0

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      .||||+||..|+.+++++|++.+..........  .+++++|+..|+.+++++|+++|++++..|.          .|+|
T Consensus        38 ~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~----------~g~t  105 (223)
T d1uoha_          38 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAG--WSPLHIAASAGRDEIVKALLGKGAQVNAVNQ----------NGCT  105 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTC--CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCT----------TCCC
T ss_pred             CCHHHHHHHhhhhcccccccccccccccccccc--cccccccccccccchhHHHhccCceeEeeCC----------CCCc
Confidence            478999999999999999999998887776665  8999999999999999999999999999998          9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  170 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v  170 (489)
                      |||+|+.+|+.+++++|++.+.+                                 ++..+..|.||||+|+..++.+++
T Consensus       106 pL~~A~~~~~~e~~~~Ll~~g~d---------------------------------~~~~~~~~~t~L~~a~~~~~~~~~  152 (223)
T d1uoha_         106 PLHYAASKNRHEIAVMLLEGGAN---------------------------------PDAKDHYEATAMHRAAAKGNLKMI  152 (223)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hhhHHHHcCCHHHHHHHHHCCCC---------------------------------CCCcCCCCCccchhhhhcCCcchh
Confidence            99999999999999999987543                                 677889999999999999999999


Q ss_pred             HHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          171 QLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       171 ~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      ++|++.|.+++..+..          |+||||+|+..|+.++|++||++|+|++.+|.+|+||||+| ..|+.+++++|+
T Consensus       153 ~~L~~~~~~i~~~d~~----------g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll  221 (223)
T d1uoha_         153 HILLYYKASTNIQDTE----------GNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMV  221 (223)
T ss_dssp             HHHHHTTCCSCCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHH
T ss_pred             hhhccccceeeeccCC----------CCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhccc
Confidence            9999999999999976          99999999999999999999999999999999999999998 478999999987


Q ss_pred             CC
Q 011309          251 PS  252 (489)
Q Consensus       251 ~~  252 (489)
                      +|
T Consensus       222 ~~  223 (223)
T d1uoha_         222 EG  223 (223)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-32  Score=253.74  Aligned_cols=197  Identities=24%  Similarity=0.312  Sum_probs=167.6

Q ss_pred             hHHHHHHHHcCCHHHHH----HHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCC
Q 011309           11 GERLVSAARDGDFVEAK----MLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYL   86 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk----~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~   86 (489)
                      .||||+|+..|+.++++    +++..+.+++..+.++  +||||+|+..|+.+++++|+++|++++..|.          
T Consensus         3 ~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g--~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~----------   70 (221)
T d1iknd_           3 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQ--QTPLHLAVITNQPEIAEALLGAGCDPELRDF----------   70 (221)
T ss_dssp             CCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTC--CCHHHHHHHTTCHHHHHCCCSCCCCSCCCCT----------
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCC--Ccccccccccccccccccccccccccccccc----------
Confidence            46799999999975554    5556788888777655  9999999999999999999999999999998          


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+..|+.+++++|++.+.....                           ....+.....|.||||.|+..++
T Consensus        71 ~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~---------------------------~~~~~~~~~~~~t~l~~a~~~~~  123 (221)
T d1iknd_          71 RGNTPLHLACEQGCLASVGVLTQSCTTPHL---------------------------HSILKATNYNGHTCLHLASIHGY  123 (221)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSS---------------------------SCGGGCCCTTCCCHHHHHHHTTC
T ss_pred             ccccccccccccccccccchhhhhcccccc---------------------------cccccccccccchhhhHHhhcCC
Confidence            999999999999999999999976432111                           11144455678999999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      .+++++|+..|+.++..+..         .|.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|++.++.+++
T Consensus       124 ~~~~~~l~~~~~~~~~~~~~---------~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         124 LGIVELLVSLGADVNAQEPC---------NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HHHHHHHHHHTCCTTCCCTT---------TCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             hhheeeecccCccccccccc---------CCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHH
Confidence            99999999999999887643         399999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCC
Q 011309          247 PLLAPSSDA  255 (489)
Q Consensus       247 ~LL~~~~~~  255 (489)
                      ++|.+....
T Consensus       195 ~~l~~~~~~  203 (221)
T d1iknd_         195 QQLGQLTLE  203 (221)
T ss_dssp             HHHHTTSCG
T ss_pred             HHHHHcCCc
Confidence            988776544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.9e-30  Score=248.25  Aligned_cols=235  Identities=25%  Similarity=0.205  Sum_probs=172.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCC-----------
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQ-----------   79 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~-----------   79 (489)
                      .+.|+.|++.|++++|++||++|++++...... |+||||+|+..|+.+++++|++.|.+++..+..+.           
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~-g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEG-GWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTT-CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCC-CCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            578999999999999999999999998766543 49999999999999999999999998877766543           


Q ss_pred             ------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCc-------------cccccccccccCCchhh
Q 011309           80 ------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPF-------------EVMNTQIEGDRGDGSSV  134 (489)
Q Consensus        80 ------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~-------------~~~~l~~~~~~~~~~~~  134 (489)
                                  .....+..|.|+|++|+..|+..+++.++.........             +.++++.+...+....+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                        22334567888888888888888888887644332221             12233333333333333


Q ss_pred             hhhhhhhhhhhhhccccCCCccHHHHHHHcC----CHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCH
Q 011309          135 KSKCDQSALSKFVNKAADGGITALHMAALNG----YFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNL  210 (489)
Q Consensus       135 ~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g----~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~  210 (489)
                      ..+...  .+..++..+..|.++++.+...+    ..+++++|+++|++++..+..          |.||||+|+..|+.
T Consensus       165 ~~Ll~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~----------g~t~L~~a~~~~~~  232 (285)
T d1wdya_         165 KILLDE--MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGER----------GKTPLILAVEKKHL  232 (285)
T ss_dssp             HHHHHT--SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTT----------SCCHHHHHHHTTCH
T ss_pred             HHHHhc--cCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCC----------CCCccchhhhcCcH
Confidence            332221  12235666666666665554432    345677777777777766654          99999999999999


Q ss_pred             HHHHHHHH-cCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc-CCCCCCCC
Q 011309          211 KCCQVLLS-RGASRMSLNCNGWLPLDVARMWGRHWLEPLLA-PSSDAVMP  258 (489)
Q Consensus       211 eivk~LL~-~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~-~~~~~~~~  258 (489)
                      ++|++||+ .|+|++.+|.+|+||||+|++.|+.+++++|+ .|++++..
T Consensus       233 ~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         233 GLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            99999998 49999999999999999999999999987774 46776654

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.2e-30  Score=240.34  Aligned_cols=205  Identities=23%  Similarity=0.209  Sum_probs=131.2

Q ss_pred             HHHHHHHHcCCHHHHHHHhhcCC-CCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           12 ERLVSAARDGDFVEAKMLLDCNP-CLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        12 t~L~~Aa~~G~~~~Vk~LL~~g~-~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +|||+||+.|++++|+.||+.++ .++..+.+  |+||||+|+..|+.++|++||++|++++..+...       ..|.+
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~--G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~-------~~~~~   72 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQD--GRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD-------DSGWT   72 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTT--SCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCC-------TTSCC
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCC--CCCHHHHHHHcCCccccchhhhhhcccccccccc-------ccccc
Confidence            59999999999999999998654 55554444  4999999999999999999999999998765422       38999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCc-----cccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPF-----EVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  165 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g  165 (489)
                      |+|+|+..+..++++.++..+......     ..+.+......+.......+   .......+..|..|.||||+|+..|
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l---~~~~~~~~~~~~~g~t~l~~a~~~~  149 (229)
T d1ixva_          73 PFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFL---IENGASVRIKDKFNQIPLHRAASVG  149 (229)
T ss_dssp             HHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHH---HHTTCCSCCCCTTSCCHHHHHHHHT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhhhhh---hhhcccccccCCCCCCccchhhhcc
Confidence            999999999999999998654322211     11111222111111111111   1112223445555566666666666


Q ss_pred             CHHHHHHHHhcC-CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCcHHHHHH
Q 011309          166 YFDCVQLLLDLH-ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLS-RGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       166 ~~e~v~~LL~~G-advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~-~Gadvn~~d~~G~TpL~~A~  238 (489)
                      +.+++++|++.| .+++..+..          |+||||+|+..|+.++|++||+ .|+|++.+|.+|+||||+|+
T Consensus       150 ~~~~~~~Ll~~~~~~in~~d~~----------g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         150 SLKLIELLCGLGKSAVNWQDKQ----------GWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTT----------SCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             cccccccccccccccccccccc----------cCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            666666666554 344555443          5566666666666666666554 35666666666666666655

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-30  Score=237.91  Aligned_cols=214  Identities=25%  Similarity=0.279  Sum_probs=170.5

Q ss_pred             chHHHHHHHHcCCHHHHHHHhh----cCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309           10 SGERLVSAARDGDFVEAKMLLD----CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~----~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      +.||||+||+.|++++|+.|++    .|.+++..+..+  +||||+|+..|+.++|++|+++|++++..+.         
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g--~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~---------   71 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLR--QTPLHLAVITTLPSVVRLLVTAGASPMALDR---------   71 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTS--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCC--Cccceehhccccccccccccccccccccccc---------
Confidence            4689999999999999999885    788888777655  9999999999999999999999999999987         


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccc-------cccccccccCCchhhhhhhhhhhhhhhhccccCCCccHH
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV-------MNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITAL  158 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpL  158 (489)
                       .|.++++.|...++.++++.+............       ..++.............+  ...........+..|.++|
T Consensus        72 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l--~~~~~~~~~~~~~~~~~~l  148 (228)
T d1k1aa_          72 -HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL--LERGADIDAVDIKSGRSPL  148 (228)
T ss_dssp             -TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHH--HHTTCCTTCCCTTTCCCHH
T ss_pred             -ccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhh--hccccccccccccchhhHH
Confidence             899999999999999999988864332211110       011111111111110000  0111112345566899999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          159 HMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       159 h~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                      +.|+..+..+++++++++|.+++..+..          |.||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|+
T Consensus       149 ~~a~~~~~~~~~~~~~~~~~~~~~~d~~----------g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~  218 (228)
T d1k1aa_         149 IHAVENNSLSMVQLLLQHGANVNAQMYS----------GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR  218 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCBCTT----------SCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS
T ss_pred             HHHHHhhhhhhhhhhhhhcccccccccc----------CcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            9999999999999999999999998876          999999999999999999999999999999999999999999


Q ss_pred             HcCcHhHHH
Q 011309          239 MWGRHWLEP  247 (489)
Q Consensus       239 ~~g~~~i~~  247 (489)
                      ++|+.++++
T Consensus       219 ~~~~~divk  227 (228)
T d1k1aa_         219 SRRVIDILR  227 (228)
T ss_dssp             SHHHHHHHT
T ss_pred             hCCCccccC
Confidence            999988764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=3.9e-30  Score=238.33  Aligned_cols=203  Identities=28%  Similarity=0.283  Sum_probs=165.3

Q ss_pred             HHHHHHHhhcCCCCccc-CCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCH
Q 011309           23 FVEAKMLLDCNPCLAKY-STFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV  101 (489)
Q Consensus        23 ~~~Vk~LL~~g~~l~~~-~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~  101 (489)
                      .++|++||++|++++.. +.+|  +||||+||..|+.++|++||++|+++|.++.          .+.++++.++..++.
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G--~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~----------~~~~~~~~~~~~~~~   69 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTG--ETSLHLAARFARADAAKRLLDAGADANSQDN----------TGRTPLHAAVAADAM   69 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT----------TSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCCcCcCcCCCC--CCHHHHHHHcCCHHHHHHHHhhccccccccc----------ccccccccccccccc
Confidence            48999999999998764 4455  8999999999999999999999999999998          899999999999999


Q ss_pred             HHHHHHHHccCCCCCcc----ccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcC
Q 011309          102 RCIRLVVADFVPSVPFE----VMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLH  177 (489)
Q Consensus       102 ~~vk~LL~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~G  177 (489)
                      .................    ..................   .......++..+..|.|||++|+..+..+++++|++.+
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~  146 (209)
T d1ot8a_          70 GVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVED---LITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH  146 (209)
T ss_dssp             HHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHH---HHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccccccccccccccccccccccccccccccchhhhhh---hhhhcccccccCCCCCCcchhhcccCcceeeeeecccc
Confidence            88877775432221111    111111111111111111   12223346788999999999999999999999999999


Q ss_pred             CCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          178 ANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       178 advn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      .+++..|..          |.||||+|+..|+.++|++||++|+|++.+|.+|+||||+|++.|+.+++++|.
T Consensus       147 ~~~~~~d~~----------g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL~  209 (209)
T d1ot8a_         147 ANRDAQDDK----------DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLLD  209 (209)
T ss_dssp             CCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             ccccccccc----------cccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhcC
Confidence            999998876          999999999999999999999999999999999999999999999999999983

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=8.9e-28  Score=233.68  Aligned_cols=237  Identities=21%  Similarity=0.199  Sum_probs=153.0

Q ss_pred             HHcCCHHHHHHHhhcCCCCcccCCC-------CCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           18 ARDGDFVEAKMLLDCNPCLAKYSTF-------GGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        18 a~~G~~~~Vk~LL~~g~~l~~~~~~-------~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      ++....+.++.++....+.......       ..+.||||.||..|+.++|++||++|+|+|..|.          +|+|
T Consensus         6 ~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~----------~G~T   75 (291)
T d1s70b_           6 AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV----------DGLT   75 (291)
T ss_dssp             HHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCT----------TCCB
T ss_pred             HhHhhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCC----------CCCc
Confidence            4455567777777766554422211       1235999999999999999999999999999998          9999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCC---ccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVP---FEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYF  167 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~  167 (489)
                      |||+|+.+|+.++|++|++.+.....   ...++++.+...+....+..+...   ....+..|..|.+++++|+..++.
T Consensus        76 ~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~a~~~~~~  152 (291)
T d1s70b_          76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ---GAHVGAVNSEGDTPLDIAEEEAME  152 (291)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHCCSHHHH
T ss_pred             HHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhccccc---CcccccccccCccccccccccccc
Confidence            99999999999999999987654221   111222222222222222111111   112333444455555555544444


Q ss_pred             HHHHHHHhc-CCCccccccc----------------CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Q 011309          168 DCVQLLLDL-HANVSAVTFH----------------YGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNG  230 (489)
Q Consensus       168 e~v~~LL~~-Gadvn~~~~~----------------~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G  230 (489)
                      +.++.|++. +.++......                ..........|.||||+|+..|+.+++++|+++|+|++.+|.+|
T Consensus       153 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g  232 (291)
T d1s70b_         153 ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDG  232 (291)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             hhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCC
Confidence            444444422 2211100000                00000011458999999999999999999999999999999999


Q ss_pred             CcHHHHHHHcCcHhHHHHhcC-CCCCCCCCCCCCCCcchhhH
Q 011309          231 WLPLDVARMWGRHWLEPLLAP-SSDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       231 ~TpL~~A~~~g~~~i~~LL~~-~~~~~~~~~~~~~~~~~pl~  271 (489)
                      +||||+|+..|+.+++++|++ +++++..    +..+.+|++
T Consensus       233 ~TpL~~A~~~g~~~iv~lLl~~Gadv~~~----d~~G~TaL~  270 (291)
T d1s70b_         233 WTPLHAAAHWGKEEACRILVENLCDMEAV----NKVGQTAFD  270 (291)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCC----CTTSCCTTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCc----CCCCCCHHH
Confidence            999999999999999988765 4555544    344455554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.3e-28  Score=212.84  Aligned_cols=151  Identities=27%  Similarity=0.330  Sum_probs=137.7

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .||||.||+.|+.++|++||++|++++ .|.          .|+||||+|+..++.++++.++.....            
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~----------~g~t~L~~a~~~~~~~~~~~~~~~~~~------------   59 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDW----------LGTSPLHLAAQYGHFSTTEVLLRAGVS------------   59 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCT----------TCCCHHHHHHHHTCHHHHHHHHTTTCC------------
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-ccc----------CCCcccccccccccccccccccccccc------------
Confidence            599999999999999999999999987 466          899999999999999999998854221            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                                           .+..+..+.++++.++...+.+++++|+++|++.+.++..          |+||||+|+
T Consensus        60 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------g~T~L~~A~  108 (153)
T d1awcb_          60 ---------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDML----------KMTALHWAT  108 (153)
T ss_dssp             ---------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT----------SCCHHHHHH
T ss_pred             ---------------------ccccccccccccccccccccceeeecccccCCcccccccc----------CchHHHhhh
Confidence                                 3444567789999999999999999999999999998876          999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhc
Q 011309          206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLA  250 (489)
Q Consensus       206 ~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~  250 (489)
                      ..|+.++|++|+++|+|++.+|.+|+||||+|+.+|+.+++++|.
T Consensus       109 ~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL~  153 (153)
T d1awcb_         109 EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ  153 (153)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHC
T ss_pred             hcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhCc
Confidence            999999999999999999999999999999999999999999884

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.4e-28  Score=214.53  Aligned_cols=153  Identities=31%  Similarity=0.426  Sum_probs=142.9

Q ss_pred             hHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccccccccc
Q 011309           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEG  126 (489)
Q Consensus        47 TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~  126 (489)
                      +|||+||..|+.++|++|+++|+|+|.+|.          .|.||||+|+ .|+.+++++|++.+..             
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~----------~g~TpL~~A~-~~~~ei~~~Ll~~~a~-------------   58 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNG----------FGRTALQVMK-LGNPEIARRLLLRGAN-------------   58 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCT----------TSCCHHHHCC-SSCHHHHHHHHHTTCC-------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCC----------cccccccccc-cccccccccccccccc-------------
Confidence            899999999999999999999999999998          9999999886 7999999999987543             


Q ss_pred             ccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHH
Q 011309          127 DRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAAC  206 (489)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~  206 (489)
                                          ++..+..|.++|+.++..++.+.+++|++.+.+++..+..          |.+|||+|+.
T Consensus        59 --------------------~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~l~~a~~  108 (156)
T d1ihba_          59 --------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNE----------GNLPLHLAAK  108 (156)
T ss_dssp             --------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHH
T ss_pred             --------------------cccccccCcccccccccccccccccccccccccccccccc----------cccccccccc
Confidence                                6778889999999999999999999999999999988876          9999999999


Q ss_pred             cCCHHHHHHHHHcCC-CCCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          207 GGNLKCCQVLLSRGA-SRMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       207 ~g~~eivk~LL~~Ga-dvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      .++.+++++|+++|+ +++.+|.+|+||||+|++.++.+++++|.+.+
T Consensus       109 ~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         109 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999987 89999999999999999999999999997653

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=8.1e-28  Score=212.81  Aligned_cols=154  Identities=28%  Similarity=0.382  Sum_probs=141.9

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCCh
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRT   90 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~T   90 (489)
                      +++||+||..|++++|++||++|++++..+..+  +||||+|+ .|+.+++++|+++|++++..+.          .|.+
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g--~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~----------~~~~   68 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFG--RTALQVMK-LGNPEIARRLLLRGANPDLKDR----------TGFA   68 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTS--CCHHHHCC-SSCHHHHHHHHHTTCCTTCCCT----------TSCC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHCCCCcCccCCcc--cccccccc-cccccccccccccccccccccc----------cCcc
Confidence            589999999999999999999999998877665  99999886 7899999999999999999998          8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHH
Q 011309           91 ALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCV  170 (489)
Q Consensus        91 pLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v  170 (489)
                      +|+.++..++.+++++|+..+..                                 ++..|..|.+|||+|+..++.+++
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~~~---------------------------------~~~~~~~~~~~l~~a~~~~~~~~~  115 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQAD---------------------------------VNIEDNEGNLPLHLAAKEGHLRVV  115 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccccccccccccccccccc---------------------------------cccccccccccccccccccccccc
Confidence            99999999999999999976432                                 677888999999999999999999


Q ss_pred             HHHHhcCC-CcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcC
Q 011309          171 QLLLDLHA-NVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRG  220 (489)
Q Consensus       171 ~~LL~~Ga-dvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~G  220 (489)
                      ++|+++|+ +++.++..          |.||||+|+..|+.++|++|+++|
T Consensus       116 ~~Ll~~~~~~~~~~d~~----------g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         116 EFLVKHTASNVGHRNHK----------GDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHSCCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccCCC----------CCCHHHHHHHcCCHHHHHHHHhcC
Confidence            99999987 78888766          999999999999999999999987

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=8.2e-28  Score=229.42  Aligned_cols=169  Identities=22%  Similarity=0.227  Sum_probs=143.1

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCC----------C
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCG----------Q   79 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g----------~   79 (489)
                      ..||||+|+..|+.++|++|+++|++++..+..+  +||||+|+..|+.+++++|++.+..........          .
T Consensus        45 g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g--~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~  122 (255)
T d1oy3d_          45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGG--HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD  122 (255)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTS--CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------
T ss_pred             CCCccchHHhhccccccccccccccccccccccc--chhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhccc
Confidence            3589999999999999999999999998877666  899999999999999999998764432111000          0


Q ss_pred             ---------------------------cccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCch
Q 011309           80 ---------------------------VTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGS  132 (489)
Q Consensus        80 ---------------------------i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~  132 (489)
                                                 .....+..|.||||+|+..|+.+++++|++.+..                   
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~-------------------  183 (255)
T d1oy3d_         123 TSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-------------------  183 (255)
T ss_dssp             ---------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-------------------
T ss_pred             chHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccc-------------------
Confidence                                       1223456899999999999999999999976543                   


Q ss_pred             hhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHH
Q 011309          133 SVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKC  212 (489)
Q Consensus       133 ~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~ei  212 (489)
                                   ..+..+..|.||||+|+..|+.++|++|+++|++++.++..          |.||||+|+..|+.++
T Consensus       184 -------------~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~----------g~t~L~~A~~~~~~~i  240 (255)
T d1oy3d_         184 -------------LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYG----------GRTPLGSALLRPNPIL  240 (255)
T ss_dssp             -------------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHTSSCHHH
T ss_pred             -------------ccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCC----------CCCHHHHHHHCCCHHH
Confidence                         13345678999999999999999999999999999999976          9999999999999999


Q ss_pred             HHHHHHcCCC
Q 011309          213 CQVLLSRGAS  222 (489)
Q Consensus       213 vk~LL~~Gad  222 (489)
                      +++|+++||+
T Consensus       241 ~~~Ll~~Ga~  250 (255)
T d1oy3d_         241 ARLLRAHGAP  250 (255)
T ss_dssp             HHHHHHTTCC
T ss_pred             HHHHHHcCCC
Confidence            9999999997

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.7e-27  Score=223.53  Aligned_cols=191  Identities=18%  Similarity=0.141  Sum_probs=152.5

Q ss_pred             CchHHHHHHHHcCCHHHHHHHhhcCCCCcccC-CCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCC
Q 011309            9 ASGERLVSAARDGDFVEAKMLLDCNPCLAKYS-TFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLS   87 (489)
Q Consensus         9 ~s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~-~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~   87 (489)
                      ...||||+|+..|+.++|++||++|++++... .+..|.||+|+|+..+..++++.++..+.+.+....        ...
T Consensus        33 ~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  104 (229)
T d1ixva_          33 DGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------TNQ  104 (229)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCC--------CTT
T ss_pred             CCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccccc--------ccc
Confidence            34579999999999999999999999876432 233458999999999999999999998876554322        127


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHccCCC---CCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHc
Q 011309           88 GRTALHFAAVNGHVRCIRLVVADFVPS---VPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALN  164 (489)
Q Consensus        88 G~TpLh~Aa~~g~~~~vk~LL~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~  164 (489)
                      +.|+|++++..++.+++++|+..+...   +..+.++++.+...+....+..+....  ...++.+|.+|.||||+|+..
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~--~~~in~~d~~g~TpLh~A~~~  182 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNWQDKQGWTPLFHALAE  182 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT--CCCSCCCCTTSCCHHHHHHHT
T ss_pred             cccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc--cccccccccccCCchhhhccc
Confidence            888999999999999998888765433   345556677777766666555543322  235788999999999999999


Q ss_pred             CCHHHHHHHHh-cCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Q 011309          165 GYFDCVQLLLD-LHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       165 g~~e~v~~LL~-~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gad  222 (489)
                      |+.++|++||+ .|++++.+|..          |+||||+|+   +.+++++|+++|+|
T Consensus       183 ~~~~~v~~Ll~~~gad~~~~d~~----------g~t~l~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         183 GHGDAAVLLVEKYGAEYDLVDNK----------GAKAEDVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             TCHHHHHHHHHHHCCCSCCCCTT----------SCCTGGGCS---CHHHHHHHHHHCCC
T ss_pred             ccHHHHHHHHHhcCCCCCCcCCC----------CCCHHHHHh---hHHHHHHHHHcCCC
Confidence            99999999996 59999999976          999999998   45899999999997

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-27  Score=210.20  Aligned_cols=151  Identities=25%  Similarity=0.293  Sum_probs=139.2

Q ss_pred             hHHHHHHHhCcHHHHHHHHHc-CCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           47 SPLHFAAAKGHNEIVALLLEN-GADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        47 TpLh~Aa~~G~~eivk~LLe~-Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      +.|+.||..|+.++|++||++ ++++|..|.          .|+||||+|+ .|+.+++++|+..+..            
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~----------~g~t~L~~A~-~~~~~~v~~Ll~~~~~------------   60 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNR----------FGKTALQVMM-FGSTAIALELLKQGAS------------   60 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCT----------TSCCHHHHSC-TTCHHHHHHHHHTTCC------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCC----------CCCccccccc-cccccccccccccccc------------
Confidence            569999999999999999986 799999998          9999999987 5899999999976533            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                                           ++..+..|.+||++|+..++.+++++++++|++++..+..          |.||||+|+
T Consensus        61 ---------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~----------~~t~L~~A~  109 (156)
T d1bd8a_          61 ---------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGT----------GALPIHLAV  109 (156)
T ss_dssp             ---------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT----------SCCHHHHHH
T ss_pred             ---------------------ccccccccccccccccccccccccccccccccccccccCC----------CCeeecccc
Confidence                                 6777888999999999999999999999999999998876          999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC
Q 011309          206 CGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS  252 (489)
Q Consensus       206 ~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~  252 (489)
                      ..|+.+++++|+ .|++++.+|.+|+||||+|+++|+.+++++|..+
T Consensus       110 ~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         110 QEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999887 7999999999999999999999999999999764

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.95  E-value=2.3e-29  Score=253.84  Aligned_cols=204  Identities=18%  Similarity=0.049  Sum_probs=158.2

Q ss_pred             chHHHHHHHHcCCHHHHHH---HhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCC
Q 011309           10 SGERLVSAARDGDFVEAKM---LLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYL   86 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~---LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~   86 (489)
                      ..|+||+||+.|+.++|++   |++.|++++..+..+  +||||+||++||.++|++|+++|++++..+..        .
T Consensus        90 ~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g--~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~--------~  159 (346)
T d2ajaa1          90 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN--YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ--------A  159 (346)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHH--HHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHS--------H
T ss_pred             CCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCC--CCHHHHHHHCCCHHHHHHHHHcCCCccccccc--------c
Confidence            4689999999999887765   789999988877666  99999999999999999999999999887631        1


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .|.||||+|+.+||.++|++|++.+..                              ....+..+.+|.||||.|+.+|+
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~------------------------------~~~~~~~~~~~~t~l~~A~~~g~  209 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPT------------------------------EATAMIQAENYYAFRWAAVGRGH  209 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGG------------------------------GHHHHHHHHHHHHHHHHHSTTCC
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCc------------------------------ccccccccCCCcchhhHHhhcCH
Confidence            589999999999999999999976422                              01134444567788999999999


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccc----------------------cC-C----------------CCCcHHHHHHHc
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMD----------------------LI-G----------------AGSTPLHFAACG  207 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~----------------------~~-~----------------~G~TpLh~Aa~~  207 (489)
                      .++|++|++.|++++..+........                      .. .                .+.++|+.|+..
T Consensus       210 ~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~  289 (346)
T d2ajaa1         210 HNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE  289 (346)
T ss_dssp             HHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccchhhhHHHHHhcC
Confidence            99999999999877643322111000                      00 0                124688999999


Q ss_pred             CCHHHHHHHHHcCCC-----CCccCCCCCcHHHHHHHcCcHhHHHHhcCCC
Q 011309          208 GNLKCCQVLLSRGAS-----RMSLNCNGWLPLDVARMWGRHWLEPLLAPSS  253 (489)
Q Consensus       208 g~~eivk~LL~~Gad-----vn~~d~~G~TpL~~A~~~g~~~i~~LL~~~~  253 (489)
                      |..+++++|++.++.     .+..+.+|+||||+|++.|+.+++++|+.-+
T Consensus       290 ~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~p  340 (346)
T d2ajaa1         290 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP  340 (346)
T ss_dssp             GGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH
T ss_pred             ChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCCC
Confidence            999999999988764     3445578999999999999999999998754

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5e-27  Score=208.76  Aligned_cols=153  Identities=27%  Similarity=0.383  Sum_probs=138.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhc-CCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDC-NPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSG   88 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~-g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G   88 (489)
                      ++++|+.||..|++++|+.||+. +.+++..+..+  +||||+|+ .|+.++|++||+++++++..+.          .|
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g--~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~----------~~   68 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFG--KTALQVMM-FGSTAIALELLKQGASPNVQDT----------SG   68 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTS--CCHHHHSC-TTCHHHHHHHHHTTCCTTCCCT----------TS
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCC--Cccccccc-cccccccccccccccccccccc----------cc
Confidence            47889999999999999999986 56776665544  99999987 5889999999999999999987          89


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .+||++|+..++.++++++++.+..                                 +|.+|..|.||||+|+..|+.+
T Consensus        69 ~~~l~~~~~~~~~~~~~~~l~~~~~---------------------------------~n~~~~~~~t~L~~A~~~~~~~  115 (156)
T d1bd8a_          69 TSPVHDAARTGFLDTLKVLVEHGAD---------------------------------VNVPDGTGALPIHLAVQEGHTA  115 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------SCCCCTTSCCHHHHHHHHTCHH
T ss_pred             ccccccccccccccccccccccccc---------------------------------cccccCCCCeeecccccccccc
Confidence            9999999999999999999986543                                 6788899999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSR  219 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~  219 (489)
                      ++++|+ .|++++.++..          |+||||+|+..|+.+++++|+++
T Consensus       116 i~~~L~-~~~~~~~~d~~----------G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         116 VVSFLA-AESDLHRRDAR----------GLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHH-TTSCTTCCCTT----------SCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccc-ccccccccCCC----------CCCHHHHHHHcCCHHHHHHHHhh
Confidence            999888 68999998876          99999999999999999999975

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8e-27  Score=236.72  Aligned_cols=214  Identities=27%  Similarity=0.332  Sum_probs=164.7

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCC---cccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVP---FEVMNT  122 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~---~~~~~l  122 (489)
                      .||||+||..|+.++|++||++|+++|..|.          .|.||||+|+..|+.++|++|++++++.+.   .+.+++
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~----------~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L   70 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNV----------KVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPL   70 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSS----------CCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCC----------CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHH
Confidence            3999999999999999999999999999998          899999999999999999999998765432   334455


Q ss_pred             ccccccCCchhhhhhhh---------------------------------------------------------------
Q 011309          123 QIEGDRGDGSSVKSKCD---------------------------------------------------------------  139 (489)
Q Consensus       123 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  139 (489)
                      +.+...+.......+..                                                               
T Consensus        71 ~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~  150 (408)
T d1n11a_          71 HCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL  150 (408)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHH
Confidence            44444433322211110                                                               


Q ss_pred             hhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCcccc--------------------------
Q 011309          140 QSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDL--------------------------  193 (489)
Q Consensus       140 ~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~--------------------------  193 (489)
                      .......++..+.+|.+|||+|+..|+.+++++|+++|++++..+..+.+++..                          
T Consensus       151 ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~  230 (408)
T d1n11a_         151 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ  230 (408)
T ss_dssp             HHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             HHHcCCCCCcCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCC
Confidence            000111256778899999999999999999999999999998766554443311                          


Q ss_pred             ------------------------------CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcH
Q 011309          194 ------------------------------IGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRH  243 (489)
Q Consensus       194 ------------------------------~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~  243 (489)
                                                    ...|.||||.|+..++.+++++|+++|++++..+..+.||||+|+..++.
T Consensus       231 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~  310 (408)
T d1n11a_         231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNI  310 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCS
T ss_pred             CCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcc
Confidence                                          13578899999999999999999999999999999999999999999999


Q ss_pred             hHHHHhcC-CCCCCCCCCCCCCCcchhhHHH
Q 011309          244 WLEPLLAP-SSDAVMPRFHPSNYLSLPLLSV  273 (489)
Q Consensus       244 ~i~~LL~~-~~~~~~~~~~~~~~~~~pl~~~  273 (489)
                      ++++++.+ +.+.+..    +..+.+||+.+
T Consensus       311 ~~~~~ll~~g~~in~~----d~~G~T~Lh~A  337 (408)
T d1n11a_         311 KLVKFLLQHQADVNAK----TKLGYSPLHQA  337 (408)
T ss_dssp             HHHHHHHHTTCCTTCC----CTTSCCHHHHH
T ss_pred             eeeeeecccccccccc----CCCCCCHHHHH
Confidence            88776655 4444443    45677776653

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.94  E-value=4.3e-28  Score=233.44  Aligned_cols=248  Identities=18%  Similarity=0.151  Sum_probs=163.4

Q ss_pred             HHHHHHHH-cCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHH--------HHcCCCCCCcCCCCCccc
Q 011309           12 ERLVSAAR-DGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALL--------LENGADVNSRNYCGQVTR   82 (489)
Q Consensus        12 t~L~~Aa~-~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~L--------Le~Gad~n~~d~~g~i~~   82 (489)
                      ||||.|++ .|..++++.|.+.+.+...  ... |+||||+||..|+.++|++|        +++|||||.+|.      
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~--~~~-g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~------   72 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID--PRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC------   72 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC--CSS-CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCT------
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC--CCC-CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCC------
Confidence            57775544 4666666666677666433  222 48999999999999998877        567999999998      


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHccCCCC---CccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHH
Q 011309           83 ADYLSGRTALHFAAVNGHVRCIRLVVADFVPSV---PFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALH  159 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh  159 (489)
                          +|+||||+|+.+|+.++|++|++.+++.+   ..+.+.++.+...+.......+.........++..+..+.++.+
T Consensus        73 ----~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  148 (277)
T d2fo1e1          73 ----DENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALM  148 (277)
T ss_dssp             ----TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHH
T ss_pred             ----CCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHH
Confidence                99999999999999999999999876522   12333444444444333333333333333344555555555555


Q ss_pred             HHHHcCCHH---HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHH
Q 011309          160 MAALNGYFD---CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLL-SRGASRMSLNCNGWLPLD  235 (489)
Q Consensus       160 ~Aa~~g~~e---~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL-~~Gadvn~~d~~G~TpL~  235 (489)
                      .+...+..+   .+.++.+............  .......|.||||+++..++.+++++++ ..+.+.+.+|..|+||||
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~  226 (277)
T d2fo1e1         149 IVAHNEGRDQVASAKLLVEKGAKVDYDGAAR--KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  226 (277)
T ss_dssp             HHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG--TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             HHHhccccccccccccccccccccccccccc--ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHH
Confidence            555554322   3333333222111100000  0001135899999999999999999765 678999999999999999


Q ss_pred             HHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHHHHHHHHcCC
Q 011309          236 VARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSVLNVARECGL  282 (489)
Q Consensus       236 ~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~  282 (489)
                      +|++.|+.+++++|.+. ++++..    +..+.+|+    .+|...|.
T Consensus       227 ~A~~~g~~~iv~~Ll~~gadin~~----d~~G~T~L----~~A~~~~~  266 (277)
T d2fo1e1         227 LAAQEGRIEVVMYLIQQGASVEAV----DATDHTAR----QLAQANNH  266 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSSCC----CSSSCCHH----HHHHHTTC
T ss_pred             HHHHcCCHHHHHHHHHCcCCCCCc----CCCCCCHH----HHHHHcCC
Confidence            99999999998887654 454443    55666774    45555554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.9e-26  Score=200.51  Aligned_cols=151  Identities=29%  Similarity=0.372  Sum_probs=136.8

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCC
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGR   89 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~   89 (489)
                      .+|||+.||+.|+.++|++||++|++++ .+  ..|+||||+|+..++.++++.++......+..+.          .+.
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~--~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~----------~~~   68 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT-TD--WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK----------VDR   68 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CC--TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCT----------TCC
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc-cc--cCCCcccccccccccccccccccccccccccccc----------ccc
Confidence            4799999999999999999999999876 33  3449999999999999999999998887777766          888


Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      +++++++...+.+++++|+..+..                                 .+.+|..|.||||+|+..|+.++
T Consensus        69 ~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------~~~~~~~g~T~L~~A~~~g~~~i  115 (153)
T d1awcb_          69 TPLHMAASEGHANIVEVLLKHGAD---------------------------------VNAKDMLKMTALHWATEHNHQEV  115 (153)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCC---------------------------------TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccccccceeeecccccCCc---------------------------------cccccccCchHHHhhhhcchhhe
Confidence            999999999999999999965433                                 66788999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  216 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  216 (489)
                      |++|+++|++++..|..          |.||||+|+.+|+.|+|++|
T Consensus       116 v~~ll~~gad~~~~d~~----------g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         116 VELLIKYGADVHTQSKF----------CKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             eeeccccccCCcccCCC----------CCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999876          99999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=210.92  Aligned_cols=176  Identities=23%  Similarity=0.198  Sum_probs=142.0

Q ss_pred             CchHHHHHHHhCcH----HHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccc
Q 011309           45 LNSPLHFAAAKGHN----EIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM  120 (489)
Q Consensus        45 g~TpLh~Aa~~G~~----eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~  120 (489)
                      |.||||+|+..|+.    +++++|+..|+++|.+|.          +|+||||+|+..|+.+++++|++.+.+       
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~----------~g~TpLh~A~~~~~~~iv~~L~~~g~d-------   64 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN----------LQQTPLHLAVITNQPEIAEALLGAGCD-------   64 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCT----------TCCCHHHHHHHTTCHHHHHCCCSCCCC-------
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCC----------CCCcccccccccccccccccccccccc-------
Confidence            59999999999996    455667778999999998          999999999999999999999976543       


Q ss_pred             ccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcH
Q 011309          121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTP  200 (489)
Q Consensus       121 ~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~Tp  200 (489)
                                                ++..|..|.||||+|+..++.+++++|++.+..........    .....|.||
T Consensus        65 --------------------------~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~t~  114 (221)
T d1iknd_          65 --------------------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILK----ATNYNGHTC  114 (221)
T ss_dssp             --------------------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGG----CCCTTCCCH
T ss_pred             --------------------------ccccccccccccccccccccccccchhhhhccccccccccc----ccccccchh
Confidence                                      77889999999999999999999999999887655433221    111348999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCccC-CCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhH
Q 011309          201 LHFAACGGNLKCCQVLLSRGASRMSLN-CNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLL  271 (489)
Q Consensus       201 Lh~Aa~~g~~eivk~LL~~Gadvn~~d-~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~  271 (489)
                      ||+|+..++.+++++|+..|++++..+ .+|+||||+|++.|+.+++++|++. ++++..    +..+.+|++
T Consensus       115 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~----~~~G~tpl~  183 (221)
T d1iknd_         115 LHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRV----TYQGYSPYQ  183 (221)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCC----CTTCCCGGG
T ss_pred             hhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCccccc----CCCCCCHHH
Confidence            999999999999999999999998874 6799999999999999998888754 444443    444555544

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=209.62  Aligned_cols=211  Identities=25%  Similarity=0.170  Sum_probs=152.3

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccc---cc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM---NT  122 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~---~l  122 (489)
                      +|+||.|++.|+.++|++||++|+++|.++.         ..|+||||+|+.+|+.+++++|++.+.........   ..
T Consensus         6 ~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~---------~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~   76 (285)
T d1wdya_           6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEE---------EGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF   76 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTCCCT---------TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHCCCCcCccCC---------CCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhh
Confidence            7999999999999999999999999998764         37999999999999999999999866533221111   00


Q ss_pred             cccc---------------------------------ccCCchhhhhhhhh-------hhhhhhhccccCCCccHHHHHH
Q 011309          123 QIEG---------------------------------DRGDGSSVKSKCDQ-------SALSKFVNKAADGGITALHMAA  162 (489)
Q Consensus       123 ~~~~---------------------------------~~~~~~~~~~~~~~-------~~~~~~in~~d~~G~TpLh~Aa  162 (489)
                      ..+.                                 ..+...........       .......+..+..|.||||+|+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  156 (285)
T d1wdya_          77 LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA  156 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred             HHHhhcCCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHH
Confidence            0000                                 00000000000000       0001112344557999999999


Q ss_pred             HcCCHHHHHHHHhc-CCCcccccccCCCccccCCCCCcHHHHHHHcC----CHHHHHHHHHcCCCCCccCCCCCcHHHHH
Q 011309          163 LNGYFDCVQLLLDL-HANVSAVTFHYGTSMDLIGAGSTPLHFAACGG----NLKCCQVLLSRGASRMSLNCNGWLPLDVA  237 (489)
Q Consensus       163 ~~g~~e~v~~LL~~-Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g----~~eivk~LL~~Gadvn~~d~~G~TpL~~A  237 (489)
                      ..|+.+++++|+++ |++++..+..          |.++++.+...+    ..+++++|+++|++++.+|..|+||||+|
T Consensus       157 ~~~~~~~~~~Ll~~~~~~i~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a  226 (285)
T d1wdya_         157 EKGHVEVLKILLDEMGADVNACDNM----------GRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILA  226 (285)
T ss_dssp             HHTCHHHHHHHHHTSCCCTTCCCTT----------SCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHH
T ss_pred             HcCCHHHHHHHHhccCCCcccccCC----------CCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchh
Confidence            99999999999965 8999988876          888877765533    45799999999999999999999999999


Q ss_pred             HHcCcHhHHHHhcC--CCCCCCCCCCCCCCcchhhHHHHHHHHHcCCc
Q 011309          238 RMWGRHWLEPLLAP--SSDAVMPRFHPSNYLSLPLLSVLNVARECGLL  283 (489)
Q Consensus       238 ~~~g~~~i~~LL~~--~~~~~~~~~~~~~~~~~pl~~~l~~a~~~G~~  283 (489)
                      +..|+.+++++|+.  +.+++..    +..+.+||+    +|.++|..
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~----d~~G~TpL~----~A~~~~~~  266 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDT----DSDGKTALL----LAVELKLK  266 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCC----CTTSCCHHH----HHHHTTCH
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCC----CCCCCCHHH----HHHHcCCH
Confidence            99999999988864  4444433    456677854    55565553

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-25  Score=220.25  Aligned_cols=150  Identities=21%  Similarity=0.195  Sum_probs=114.3

Q ss_pred             cCCCCcccCCCCCCchHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCH-------HHH
Q 011309           32 CNPCLAKYSTFGGLNSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHV-------RCI  104 (489)
Q Consensus        32 ~g~~l~~~~~~~~g~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~-------~~v  104 (489)
                      .+.+++... +..|+||||+||..|+.++|++||++|+|++.+|.          .|+||||+|+..++.       +++
T Consensus        95 ~~~dvn~~~-D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~----------~G~TpL~~A~~~~~~~~~~~~~~ll  163 (301)
T d1sw6a_          95 TQLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN----------MGESCLVKAVKSVNNYDSGTFEALL  163 (301)
T ss_dssp             SCCCSCSCC-STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCT----------TCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             cCCCcCcCc-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCc----------ccccHHHHhhhcccchhhhhHHHHH
Confidence            455555431 23459999999999999999999999999999998          899999999988763       233


Q ss_pred             HHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC----HH--------HHHH
Q 011309          105 RLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY----FD--------CVQL  172 (489)
Q Consensus       105 k~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~----~e--------~v~~  172 (489)
                      ++|.+                                    .++..|..|+||||+|+..+.    ..        ++++
T Consensus       164 ~~l~~------------------------------------~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~  207 (301)
T d1sw6a_         164 DYLYP------------------------------------CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGW  207 (301)
T ss_dssp             HHHGG------------------------------------GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhh------------------------------------hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHH
Confidence            33322                                    245567778888887776443    22        2334


Q ss_pred             HHhcCCC-------------------------------------cccccccCCCccccCCCCCcHHHHHHHcCCHHHHHH
Q 011309          173 LLDLHAN-------------------------------------VSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQV  215 (489)
Q Consensus       173 LL~~Gad-------------------------------------vn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~  215 (489)
                      ++..+..                                     +|.+|.          .|+||||+|++.|+.++|++
T Consensus       208 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~----------~G~TpLh~A~~~g~~~iv~~  277 (301)
T d1sw6a_         208 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS----------NGDTCLNIAARLGNISIVDA  277 (301)
T ss_dssp             HHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT----------TSCCHHHHHHHHCCHHHHHH
T ss_pred             HHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC----------CCCCHHHHHHHcCCHHHHHH
Confidence            4444332                                     344444          39999999999999999999


Q ss_pred             HHHcCCCCCccCCCCCcHHHHHH
Q 011309          216 LLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       216 LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                      ||++|||++.+|++|+|||++|+
T Consensus       278 Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         278 LLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-24  Score=195.28  Aligned_cols=207  Identities=25%  Similarity=0.315  Sum_probs=158.3

Q ss_pred             CCchHHHHHHHhCcHHHHHHHHH----cCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccc
Q 011309           44 GLNSPLHFAAAKGHNEIVALLLE----NGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEV  119 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~LLe----~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~  119 (489)
                      +|+||||+||..|+.++|++|++    .|+++|.+|.          .|+||||+|+..|+.+++++|++.+...+....
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~----------~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~   71 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN----------LRQTPLHLAVITTLPSVVRLLVTAGASPMALDR   71 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCT----------TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCC----------CCCccceehhccccccccccccccccccccccc
Confidence            35999999999999999998874    8999999998          999999999999999999999998765443322


Q ss_pred             ---cccccccccCCchhhhhhhhhh-hhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCC
Q 011309          120 ---MNTQIEGDRGDGSSVKSKCDQS-ALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIG  195 (489)
Q Consensus       120 ---~~l~~~~~~~~~~~~~~~~~~~-~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~  195 (489)
                         .....+........+....... ......+.......++|+.+.........+.|.....+.......         
T Consensus        72 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~---------  142 (228)
T d1k1aa_          72 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK---------  142 (228)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTT---------
T ss_pred             ccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccccccccc---------
Confidence               2233332222222222111111 111224555667889999999999999999999888776655443         


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHHHHhcCC-CCCCCCCCCCCCCcchhhHHH
Q 011309          196 AGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLEPLLAPS-SDAVMPRFHPSNYLSLPLLSV  273 (489)
Q Consensus       196 ~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~~LL~~~-~~~~~~~~~~~~~~~~pl~~~  273 (489)
                      .|.++|+.|+..+..+++++++++|.+++.+|.+|.||||+|+..|+.+++++|.+. ++++..    +..+.+|++.+
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~----d~~G~TpL~~A  217 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK----NCHNDTPLMVA  217 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC----CTTSCCTTTTC
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC----CCCCCCHHHHH
Confidence            389999999999999999999999999999999999999999999999998888665 455544    44556666543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9e-25  Score=187.57  Aligned_cols=124  Identities=24%  Similarity=0.215  Sum_probs=113.0

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCC
Q 011309           87 SGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGY  166 (489)
Q Consensus        87 ~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~  166 (489)
                      .+.++||+|+.+|+.++|++|++.+.+                                 +|.+|.+|.||||+|+ .|+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad---------------------------------~n~~~~~g~t~l~~a~-~g~   47 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGAN---------------------------------PNAPNSYGRRPIQVMM-MGS   47 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCC---------------------------------TTCCCSSSCCTTTSSC-TTC
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCc---------------------------------cccccccccccccccc-ccc
Confidence            356899999999999999999987654                                 7888999999999775 799


Q ss_pred             HHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCcHhHH
Q 011309          167 FDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVARMWGRHWLE  246 (489)
Q Consensus       167 ~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~~~g~~~i~  246 (489)
                      .++|++|+++|++++..+..         .+.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+++|+.+++
T Consensus        48 ~~~v~~Ll~~ga~~~~~~~~---------~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v  118 (125)
T d1bi7b_          48 ARVAELLLLHGAEPNCADPA---------TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVA  118 (125)
T ss_dssp             HHHHHHHHTTTCCCCCCCTT---------TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             cccccccccccccccccccc---------ccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999998865         245799999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCC
Q 011309          247 PLLAPSS  253 (489)
Q Consensus       247 ~LL~~~~  253 (489)
                      ++|+..+
T Consensus       119 ~~Llsaa  125 (125)
T d1bi7b_         119 RYLRAAA  125 (125)
T ss_dssp             HHHSSCC
T ss_pred             HHHHhcC
Confidence            9998753

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.91  E-value=1.1e-23  Score=194.24  Aligned_cols=151  Identities=28%  Similarity=0.320  Sum_probs=128.1

Q ss_pred             hHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcHH-------------------------------
Q 011309           11 GERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHNE-------------------------------   59 (489)
Q Consensus        11 ~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~e-------------------------------   59 (489)
                      .||||+||+.|+.++|++||+.|++++..+..+  .++++.++..++..                               
T Consensus        24 ~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (209)
T d1ot8a_          24 ETSLHLAARFARADAAKRLLDAGADANSQDNTG--RTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA  101 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS--CCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHhhccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccc
Confidence            478999999999999999999999988776655  67777777766655                               


Q ss_pred             ---HHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhh
Q 011309           60 ---IVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKS  136 (489)
Q Consensus        60 ---ivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~  136 (489)
                         +.++|++.+++++.++.          .|.|||++|+..+..++++.|+.....                       
T Consensus       102 ~~~~~~~L~~~~~~~~~~~~----------~~~t~l~~~~~~~~~~~~~~l~~~~~~-----------------------  148 (209)
T d1ot8a_         102 IEGMVEDLITADADINAADN----------SGKTALHWAAAVNNTEAVNILLMHHAN-----------------------  148 (209)
T ss_dssp             CTTHHHHHHHTTCCTTCBCT----------TSCBHHHHHHHTTCHHHHHHHHHTTCC-----------------------
T ss_pred             chhhhhhhhhhcccccccCC----------CCCCcchhhcccCcceeeeeecccccc-----------------------
Confidence               44455555666665555          788999999999999999888865432                       


Q ss_pred             hhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHH
Q 011309          137 KCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVL  216 (489)
Q Consensus       137 ~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~L  216 (489)
                                ++..|..|.||||+|+..|+.++|++||++|++++..|..          |+||||+|+++|+.++|++|
T Consensus       149 ----------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~----------g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         149 ----------RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHM----------DRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             ----------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHHHHHTTCHHHHHHH
T ss_pred             ----------ccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCC----------CCCHHHHHHHcCCHHHHhhc
Confidence                      6788999999999999999999999999999999999876          99999999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.2e-25  Score=187.84  Aligned_cols=119  Identities=28%  Similarity=0.322  Sum_probs=109.2

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .++||+|+..|+.++|++||++|+|+|.+|.          .|.||||+|+ .|+.+++++|++.+.+            
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~----------~g~t~l~~a~-~g~~~~v~~Ll~~ga~------------   60 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNS----------YGRRPIQVMM-MGSARVAELLLLHGAE------------   60 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS----------SSCCTTTSSC-TTCHHHHHHHHTTTCC------------
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccc----------cccccccccc-cccccccccccccccc------------
Confidence            6899999999999999999999999999998          8999999775 7999999999987543            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCc-cHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGI-TALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA  204 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~-TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A  204 (489)
                                           ++.++..|. ||||+|+..|+.++|++|+++|++++.+|..          |+||||+|
T Consensus        61 ---------------------~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~----------G~T~l~~A  109 (125)
T d1bi7b_          61 ---------------------PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAW----------GRLPVDLA  109 (125)
T ss_dssp             ---------------------CCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTT----------CCCHHHHH
T ss_pred             ---------------------cccccccccccccccccccccccccccccccccccccccCC----------CCCHHHHH
Confidence                                 667777665 6999999999999999999999999999976          99999999


Q ss_pred             HHcCCHHHHHHHHH
Q 011309          205 ACGGNLKCCQVLLS  218 (489)
Q Consensus       205 a~~g~~eivk~LL~  218 (489)
                      +.+|+.+++++|++
T Consensus       110 ~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         110 EELGHRDVARYLRA  123 (125)
T ss_dssp             HHHTCHHHHHHHSS
T ss_pred             HHcCCHHHHHHHHh
Confidence            99999999999975

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.3e-25  Score=187.16  Aligned_cols=115  Identities=27%  Similarity=0.368  Sum_probs=104.8

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .|||++|+++|+.++|++|+++|++++.+|.          .|+||||+|+..|+.+++++|++.+.+            
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~----------~g~t~lh~A~~~~~~~~~~~ll~~g~d------------   60 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLE----------GGRKPLHYAADCGQLEILEFLLLKGAD------------   60 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSS----------SSCCTTHHHHHHSTTTHHHHHHHSSCT------------
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccc----------cccccccccccccccccccccccccce------------
Confidence            5899999999999999999999999999998          999999999999999999999987643            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                                           +|.+|..|.||||+|+.+|+.++|++|+++|++++.+|..          |.||||+|.
T Consensus        61 ---------------------in~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~----------G~t~l~~a~  109 (118)
T d1myoa_          61 ---------------------INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPD----------GLTALEATD  109 (118)
T ss_dssp             ---------------------TTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSS----------TCCCCCTCS
T ss_pred             ---------------------eeecccccccchhhhhhcCchhhhhhhhcccccceeeCCC----------CCCHHHHHh
Confidence                                 7888999999999999999999999999999999999977          999999983


Q ss_pred             HcCCHHHHHHHH
Q 011309          206 CGGNLKCCQVLL  217 (489)
Q Consensus       206 ~~g~~eivk~LL  217 (489)
                      .    +.++.||
T Consensus       110 ~----~~i~~LL  117 (118)
T d1myoa_         110 N----QAIKALL  117 (118)
T ss_dssp             S----TTTGGGG
T ss_pred             H----HHHHHhc
Confidence            2    4455554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.1e-23  Score=181.91  Aligned_cols=123  Identities=28%  Similarity=0.289  Sum_probs=110.9

Q ss_pred             chHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccc
Q 011309           46 NSPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIE  125 (489)
Q Consensus        46 ~TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~  125 (489)
                      .++|+.|+..|+.++|++|+++|+|+|.+|.          +|+||||+|+..|+.+++++|++.+.+            
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~----------~g~t~Lh~A~~~~~~~~~~~ll~~g~~------------   59 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDDPSLPND----------EGITALHNAVCAGHTEIVKFLVQFGVN------------   59 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSSCCCCCT----------TSCCHHHHHHHHTCHHHHHHHHHHTCC------------
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCCcccccc----------ccccccccccccccccccccccccccc------------
Confidence            4789999999999999999999999999998          999999999999999999999976543            


Q ss_pred             cccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHH-
Q 011309          126 GDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFA-  204 (489)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~A-  204 (489)
                                           ++.+|.+|+||||+|+.+|+.++|++|+++|++++..+..         .|.||++++ 
T Consensus        60 ---------------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~---------~~~~~~~~~~  109 (130)
T d1ycsb1          60 ---------------------VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS---------DMQTAADKCE  109 (130)
T ss_dssp             ---------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS---------SCCCHHHHCC
T ss_pred             ---------------------cccccccCcccccccchhhHHHHHHHHHHcCCCcccccCC---------CCCCHHHHHH
Confidence                                 7888999999999999999999999999999999988754         377887665 


Q ss_pred             -HHcCCHHHHHHHHHcC
Q 011309          205 -ACGGNLKCCQVLLSRG  220 (489)
Q Consensus       205 -a~~g~~eivk~LL~~G  220 (489)
                       +..|+.+++++|+..+
T Consensus       110 a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1         110 EMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             SSSTTCCCHHHHHHHHH
T ss_pred             HHHcChHHHHHHHHhHH
Confidence             5778999999998753

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=2e-24  Score=183.59  Aligned_cols=107  Identities=30%  Similarity=0.423  Sum_probs=101.2

Q ss_pred             ChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHH
Q 011309           89 RTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFD  168 (489)
Q Consensus        89 ~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e  168 (489)
                      .|||++|+.+|+.++|++|++.+.+                                 ++.+|..|.||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d---------------------------------~n~~~~~g~t~lh~A~~~~~~~   49 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGED---------------------------------VNRTLEGGRKPLHYAADCGQLE   49 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCC---------------------------------CCCCSSSSCCTTHHHHHHSTTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhc---------------------------------cccccccccccccccccccccc
Confidence            4899999999999999999987654                                 7888999999999999999999


Q ss_pred             HHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHH
Q 011309          169 CVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNCNGWLPLDVAR  238 (489)
Q Consensus       169 ~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~~G~TpL~~A~  238 (489)
                      ++++|+++|++++.++..          |+||||+|+..|+.++|++|+++|+|++.+|.+|+||||+|.
T Consensus        50 ~~~~ll~~g~din~~d~~----------g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          50 ILEFLLLKGADINAPDKH----------HITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHHSSCTTTCCSSS----------CSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cccccccccceeeecccc----------cccchhhhhhcCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999876          999999999999999999999999999999999999999983

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.88  E-value=3.5e-25  Score=222.95  Aligned_cols=131  Identities=18%  Similarity=0.112  Sum_probs=105.7

Q ss_pred             CCchHHHHHHHhCcHHHHHH---HHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHcCCHHHHHHHHHccCCCCCcccc
Q 011309           44 GLNSPLHFAAAKGHNEIVAL---LLENGADVNSRNYCGQVTRADYLSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVM  120 (489)
Q Consensus        44 ~g~TpLh~Aa~~G~~eivk~---LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~  120 (489)
                      .|.||||+||.+||.+++++   |++.|+++|.+|.          .|+||||+|+.+||.++|++|++.+..       
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~----------~g~taL~~Aa~~G~~~~v~~Ll~~g~~-------  151 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA----------ENYQAFRLAAENGHLHVLNRLCELAPT-------  151 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CH----------HHHHHHHHHHHTTCHHHHHHHHHSCTT-------
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCC----------CCCCHHHHHHHCCCHHHHHHHHHcCCC-------
Confidence            45899999999999887776   7899999999998          899999999999999999999987643       


Q ss_pred             ccccccccCCchhhhhhhhhhhhhhhhcccc--CCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCC
Q 011309          121 NTQIEGDRGDGSSVKSKCDQSALSKFVNKAA--DGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGS  198 (489)
Q Consensus       121 ~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d--~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~  198 (489)
                                                ++..+  .+|.||||+|+.+||.++|++|++.|++....+...       ..|.
T Consensus       152 --------------------------~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~-------~~~~  198 (346)
T d2ajaa1         152 --------------------------EIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQA-------ENYY  198 (346)
T ss_dssp             --------------------------THHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHH-------HHHH
T ss_pred             --------------------------ccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccccccccc-------CCCc
Confidence                                      33333  458999999999999999999999998764332110       0167


Q ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCC
Q 011309          199 TPLHFAACGGNLKCCQVLLSRGASRM  224 (489)
Q Consensus       199 TpLh~Aa~~g~~eivk~LL~~Gadvn  224 (489)
                      ||||.|+.+|+.++|++|+++|++++
T Consensus       199 t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         199 AFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             chhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            88889999999999999999887654

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.5e-22  Score=174.79  Aligned_cols=119  Identities=26%  Similarity=0.341  Sum_probs=108.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHH
Q 011309           90 TALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDC  169 (489)
Q Consensus        90 TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~  169 (489)
                      +.|+.|+..|+.++|++|++.+.+                                 +|.+|..|.||||+|+..|+.++
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d---------------------------------~n~~d~~g~t~Lh~A~~~~~~~~   49 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDD---------------------------------PSLPNDEGITALHNAVCAGHTEI   49 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSS---------------------------------CCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCC---------------------------------ccccccccccccccccccccccc
Confidence            689999999999999999987644                                 78899999999999999999999


Q ss_pred             HHHHHhcCCCcccccccCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCCcHHHHH--HHcCcHhHH
Q 011309          170 VQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAACGGNLKCCQVLLSRGASRMSLNC-NGWLPLDVA--RMWGRHWLE  246 (489)
Q Consensus       170 v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa~~g~~eivk~LL~~Gadvn~~d~-~G~TpL~~A--~~~g~~~i~  246 (489)
                      +++|+++|++++..|.+          |+||||+|+..|+.++|++|+++|++++.++. +|+||++++  ...|+.+++
T Consensus        50 ~~~ll~~g~~~~~~d~~----------g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv  119 (130)
T d1ycsb1          50 VKFLVQFGVNVNAADSD----------GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS  119 (130)
T ss_dssp             HHHHHHHTCCTTCCCTT----------CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred             ccccccccccccccccc----------CcccccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHH
Confidence            99999999999999877          99999999999999999999999999998864 588987776  567889999


Q ss_pred             HHhcC
Q 011309          247 PLLAP  251 (489)
Q Consensus       247 ~LL~~  251 (489)
                      ++|..
T Consensus       120 ~~L~~  124 (130)
T d1ycsb1         120 QFLYG  124 (130)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98853

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=1.7e-22  Score=198.75  Aligned_cols=171  Identities=18%  Similarity=0.143  Sum_probs=118.2

Q ss_pred             chHHHHHHHHcCCHHHHHHHhhcCCCCcccCCCCCCchHHHHHHHhCcH-------HHHHHHHHcCCCCCCcCCCCCccc
Q 011309           10 SGERLVSAARDGDFVEAKMLLDCNPCLAKYSTFGGLNSPLHFAAAKGHN-------EIVALLLENGADVNSRNYCGQVTR   82 (489)
Q Consensus        10 s~t~L~~Aa~~G~~~~Vk~LL~~g~~l~~~~~~~~g~TpLh~Aa~~G~~-------eivk~LLe~Gad~n~~d~~g~i~~   82 (489)
                      ..||||+||..|++++|++||++|++++..+..+  +||||+|+..++.       +++++|.+   +++..|.      
T Consensus       107 G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G--~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~~d~------  175 (301)
T d1sw6a_         107 GNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMG--ESCLVKAVKSVNNYDSGTFEALLDYLYP---CLILEDS------  175 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTC--CCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGEECT------
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCccc--ccHHHHhhhcccchhhhhHHHHHHHHhh---hhhhccc------
Confidence            3489999999999999999999999998877655  9999999987763       44444433   4555666      


Q ss_pred             ccCCCCChHHHHHHHcCC----HHHH--------HHHHHccCCCCC----ccccccccccccCCchhhhhhhhhhhhhhh
Q 011309           83 ADYLSGRTALHFAAVNGH----VRCI--------RLVVADFVPSVP----FEVMNTQIEGDRGDGSSVKSKCDQSALSKF  146 (489)
Q Consensus        83 ~d~~~G~TpLh~Aa~~g~----~~~v--------k~LL~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  146 (489)
                          .|+||||+|+..+.    ..++        .+++........    ..............................
T Consensus       176 ----~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         176 ----MNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             ----TCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             ----ccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence                89999999987554    2333        334433221111    111111111112222222222223334455


Q ss_pred             hccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHHHH
Q 011309          147 VNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHFAA  205 (489)
Q Consensus       147 in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~Aa  205 (489)
                      +|.+|..|.||||+|++.|+.++|++||++||+++..|..          |.|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~----------G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKS----------GLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTT----------SCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC----------CCCHHHHcC
Confidence            8999999999999999999999999999999999999977          999999986

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.2e-21  Score=171.49  Aligned_cols=126  Identities=21%  Similarity=0.295  Sum_probs=111.2

Q ss_pred             HHHHHHHcCCHHHHHHHhhcCCCCccc----CCCCCCchHHHHHHHh---CcHHHHHHHHHcCCCCCCcCCCCCcccccC
Q 011309           13 RLVSAARDGDFVEAKMLLDCNPCLAKY----STFGGLNSPLHFAAAK---GHNEIVALLLENGADVNSRNYCGQVTRADY   85 (489)
Q Consensus        13 ~L~~Aa~~G~~~~Vk~LL~~g~~l~~~----~~~~~g~TpLh~Aa~~---G~~eivk~LLe~Gad~n~~d~~g~i~~~d~   85 (489)
                      .|+.|++.+++..|+.++..|.++...    .....|+||||+|++.   |+.++|++|+++|+++|.+|.         
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~---------   79 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTG---------   79 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCT---------
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhh---------
Confidence            578999999999999999999876543    2233458999999985   678999999999999999998         


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHccCCCCCccccccccccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcC
Q 011309           86 LSGRTALHFAAVNGHVRCIRLVVADFVPSVPFEVMNTQIEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNG  165 (489)
Q Consensus        86 ~~G~TpLh~Aa~~g~~~~vk~LL~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g  165 (489)
                       .|+||||+|+..|+.+++++|++.+.+                                 ++.+|..|.||||+|+..|
T Consensus        80 -~g~TpLh~A~~~~~~~~v~~Ll~~gad---------------------------------~~~~d~~g~tpL~~A~~~~  125 (154)
T d1dcqa1          80 -KGSTALHYCCLTDNAECLKLLLRGKAS---------------------------------IEIANESGETPLDIAKRLK  125 (154)
T ss_dssp             -TCCCHHHHHHHTTCHHHHHHHHHTTCC---------------------------------TTCCCTTSCCHHHHHHHTT
T ss_pred             -hhccccccccccccccccccccccCcc---------------------------------ccccCCCCCCHHHHHHHcC
Confidence             999999999999999999999987654                                 7889999999999999999


Q ss_pred             CHHHHHHHHhcCCCcc
Q 011309          166 YFDCVQLLLDLHANVS  181 (489)
Q Consensus       166 ~~e~v~~LL~~Gadvn  181 (489)
                      +.+++++|++.++...
T Consensus       126 ~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1         126 HEHCEELLTQALSGRF  141 (154)
T ss_dssp             CHHHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHhCCCCC
Confidence            9999999999876543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.2e-21  Score=170.74  Aligned_cols=129  Identities=22%  Similarity=0.260  Sum_probs=90.4

Q ss_pred             hHHHHHHHhCcHHHHHHHHHcCCCCCCcCCCCCcccccCCCCChHHHHHHHc---CCHHHHHHHHHccCCCCCccccccc
Q 011309           47 SPLHFAAAKGHNEIVALLLENGADVNSRNYCGQVTRADYLSGRTALHFAAVN---GHVRCIRLVVADFVPSVPFEVMNTQ  123 (489)
Q Consensus        47 TpLh~Aa~~G~~eivk~LLe~Gad~n~~d~~g~i~~~d~~~G~TpLh~Aa~~---g~~~~vk~LL~~~~~~~~~~~~~l~  123 (489)
                      ..|..|++.+++..+..++..|+|++....    ....+..|+||||+|+..   |+.++|++|++.+.+          
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~----~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad----------   73 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIP----LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN----------   73 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCC----CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC----------
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCC----cccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC----------
Confidence            345678899999999999999998876532    011122677777777764   566777777765433          


Q ss_pred             cccccCCchhhhhhhhhhhhhhhhccccCCCccHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCccccCCCCCcHHHH
Q 011309          124 IEGDRGDGSSVKSKCDQSALSKFVNKAADGGITALHMAALNGYFDCVQLLLDLHANVSAVTFHYGTSMDLIGAGSTPLHF  203 (489)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~in~~d~~G~TpLh~Aa~~g~~e~v~~LL~~Gadvn~~~~~~~~~~~~~~~G~TpLh~  203 (489)
                                             +|.+|..|.||||+|+..|+.++|++|+++|++++..|..          |.||||+
T Consensus        74 -----------------------in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~----------g~tpL~~  120 (154)
T d1dcqa1          74 -----------------------LDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANES----------GETPLDI  120 (154)
T ss_dssp             -----------------------TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT----------SCCHHHH
T ss_pred             -----------------------hhhhhhhhccccccccccccccccccccccCccccccCCC----------CCCHHHH
Confidence                                   6666777777777777777777777777777777776655          7777777


Q ss_pred             HHHcCCHHHHHHHHHcCCC
Q 011309          204 AACGGNLKCCQVLLSRGAS  222 (489)
Q Consensus       204 Aa~~g~~eivk~LL~~Gad  222 (489)
                      |++.|+.+++++|++.++.
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            7777777777777766554

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=2.3e-06  Score=65.50  Aligned_cols=53  Identities=26%  Similarity=0.593  Sum_probs=43.1

Q ss_pred             CcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceec
Q 011309          292 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKL  355 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~  355 (489)
                      ....|.+|++..-+....+|||.||..|+..+-..           +...||+||..|.+...+
T Consensus        22 ~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~-----------~~~~CP~Cr~~i~~~~~i   74 (79)
T d1fbva4          22 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-----------EGQGCPFCRCEIKGTEPI   74 (79)
T ss_dssp             CTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHT-----------TCCSCTTTCCCCCCCCCS
T ss_pred             CCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHH-----------CcCcCCCCCcCccCCcee
Confidence            34679999999999999999999999999887521           122499999999887554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=97.81  E-value=3e-06  Score=62.81  Aligned_cols=51  Identities=31%  Similarity=0.671  Sum_probs=40.1

Q ss_pred             CCcchhhhhhhhccc-ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccce
Q 011309          291 DDADTCAVCLERACT-VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFT  353 (489)
Q Consensus       291 ~~~~~C~iCle~~~~-v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~  353 (489)
                      ...+.|.||++.... +...+|+|.||..|+..+-...            ..||+||..|..+.
T Consensus         3 ~~~d~C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~~------------~~CP~CR~~i~~~~   54 (68)
T d1chca_           3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQN------------PTCPLCKVPVESVV   54 (68)
T ss_dssp             CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHS------------CSTTTTCCCCCCEE
T ss_pred             CCCCCCccCCcCccCCcEEeCCCCcCcHHHHHHHHHhC------------CcCCCCCcchHhhc
Confidence            346789999998865 4558999999999998875432            13999999987654

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=3.4e-05  Score=56.37  Aligned_cols=49  Identities=24%  Similarity=0.554  Sum_probs=35.8

Q ss_pred             Ccchhhhhhhhc-----ccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          292 DADTCAVCLERA-----CTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       292 ~~~~C~iCle~~-----~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      +...|.||++..     ..+...+|||.+|..|+..+-.+.           +..||+||..|.+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~-----------~~~CP~CR~~i~~   55 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRG-----------AGNCPECGTPLRK   55 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTT-----------SSSCTTTCCCCSS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcC-----------cCCCCCCCcCccc
Confidence            357899999753     223567999999999999886322           1249999988743

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.35  E-value=4e-05  Score=54.00  Aligned_cols=47  Identities=32%  Similarity=0.657  Sum_probs=34.5

Q ss_pred             Ccchhhhhhhhccc---c-cccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          292 DADTCAVCLERACT---V-AAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       292 ~~~~C~iCle~~~~---v-~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      +...|.||++..-.   + ....|+|.||..|+..+=...            ..||+||..|.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~------------~~CP~CR~~i~   54 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSH------------STCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTC------------CSCSSSCCCSC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhC------------CcCCCCCCEeE
Confidence            44569999988743   3 345799999999999883221            24999999874

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=4.3e-05  Score=54.02  Aligned_cols=44  Identities=25%  Similarity=0.500  Sum_probs=35.6

Q ss_pred             chhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          294 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       294 ~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      -.|.||++..-+....+|||.||..|+..               ....||+||+.|..-
T Consensus         7 l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~---------------~~~~CP~Cr~~~~~~   50 (56)
T d1bora_           7 LRCQQCQAEAKCPKLLPCLHTLCSGCLEA---------------SGMQCPICQAPWPLG   50 (56)
T ss_dssp             SSCSSSCSSCBCCSCSTTSCCSBTTTCSS---------------SSSSCSSCCSSSSCC
T ss_pred             CCCcccCcccCCCEEecCCCHHhHHHHHc---------------CCCcCcCCCCcccCC
Confidence            47999999999999999999999998621               123599999988643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.17  E-value=8e-05  Score=57.41  Aligned_cols=48  Identities=23%  Similarity=0.508  Sum_probs=38.5

Q ss_pred             chhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          294 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       294 ~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      -.|.+|+|..-+....+|||.||..|+...-...           ...||+||..+...
T Consensus        24 l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~-----------~~~CP~Cr~p~~~~   71 (86)
T d1rmda2          24 ISCQICEHILADPVETSCKHLFCRICILRCLKVM-----------GSYCPSCRYPCFPT   71 (86)
T ss_dssp             TBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-----------CSBCTTTCCBCCGG
T ss_pred             cCCccCCcchhcceecCCCChhhHHHHHHHHhhC-----------CCcCcccCCCCChh
Confidence            4699999999999999999999999998764211           12499999987644

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0001  Score=58.82  Aligned_cols=48  Identities=33%  Similarity=0.768  Sum_probs=37.3

Q ss_pred             chhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          294 DTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       294 ~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      -.|.+|++..-+....+|||.||..|....-....         +...||+||..+.
T Consensus        22 l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~---------~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKK---------GPSQCPLCKNDIT   69 (103)
T ss_dssp             TSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSS---------SSCCCTTTSCCCC
T ss_pred             cCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCC---------CCCcCcCCCCcCC
Confidence            35999999988888889999999999987643321         1235999998874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00026  Score=49.02  Aligned_cols=45  Identities=22%  Similarity=0.532  Sum_probs=31.7

Q ss_pred             hhhhhhhhcc----cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          295 TCAVCLERAC----TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       295 ~C~iCle~~~----~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      .|.||++..-    .+...+|||.+|..|...+=.+.           ...||+||..+.
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~-----------~~~CP~CR~~~~   50 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDE-----------NGLCPACRKPYP   50 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTS-----------CCBCTTTCCBCS
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhc-----------CCCCCccCCcCC
Confidence            4889988652    23445899999999988873111           225999998764

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.00024  Score=57.59  Aligned_cols=50  Identities=26%  Similarity=0.675  Sum_probs=36.3

Q ss_pred             cchhhhhhhhcc------------------cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          293 ADTCAVCLERAC------------------TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       293 ~~~C~iCle~~~------------------~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      .+.|.||++...                  .+...+|+|.||..|+..+-.+.+.       .+...||+||..+
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~-------~~~~~CP~CR~~~   92 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNK-------DGSLQCPSCKTIY   92 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCC-------SSCCBCTTTCCBS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCc-------CCCCccccccchh
Confidence            467999998753                  2456789999999999987544321       1345699999766

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.00051  Score=48.20  Aligned_cols=46  Identities=9%  Similarity=-0.009  Sum_probs=36.5

Q ss_pred             hhhhhhhhccccccc-CCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccc
Q 011309          295 TCAVCLERACTVAAE-GCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSF  352 (489)
Q Consensus       295 ~C~iCle~~~~v~~~-~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~  352 (489)
                      .|.+|++-.-+.... .|||.||..|+...-..+.            .||+||+.+..-
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~~~------------~CP~c~~~l~~~   48 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTG------------NDPITNEPLSIE   48 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHS------------BCTTTCCBCCGG
T ss_pred             CCccCCchHHhcCccCCCCCcccHHHHHHHHhhcc------------CCCccCCcCCHH
Confidence            588999888776655 6999999999999875442            399999987653

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.05  E-value=0.00099  Score=49.94  Aligned_cols=60  Identities=12%  Similarity=0.119  Sum_probs=45.8

Q ss_pred             CcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCCCccc
Q 011309          292 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGSPVKD  362 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~~~~~  362 (489)
                      +.-.|.+|++-..+....+|||.+|..|+...-...           ...||+||..+......|...+|+
T Consensus         7 ~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~-----------~~~cP~~~~~l~~~~l~pN~~L~~   66 (78)
T d1t1ha_           7 EYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAG-----------HKTCPKSQETLLHAGLTPNYVLKS   66 (78)
T ss_dssp             SSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTT-----------CCBCTTTCCBCSSCCCEECTTTHH
T ss_pred             ccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHC-----------CCCCCcccccCCcccccchHHHHH
Confidence            456799999999998899999999999987753211           124999999988766666665553

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0011  Score=51.01  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=26.1

Q ss_pred             cccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccc
Q 011309          305 TVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIV  350 (489)
Q Consensus       305 ~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~  350 (489)
                      .+...+|+|.|+..|+...=..+            ..||+||+..+
T Consensus        51 ~~~~~~C~H~FH~~Ci~~Wl~~~------------~~CP~CR~~~~   84 (88)
T d3dplr1          51 TVAWGVCNHAFHFHCISRWLKTR------------QVCPLDNREWE   84 (88)
T ss_dssp             CEEEETTSCEEEHHHHHHHHTTC------------SBCSSSCSBCC
T ss_pred             CeEEccccCcccHHHHHHHHHHC------------CcCCCCCCccc
Confidence            45667999999999999985322            24999998643

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0013  Score=51.42  Aligned_cols=44  Identities=23%  Similarity=0.518  Sum_probs=33.3

Q ss_pred             chhhhhhhhccccc-ccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccccc
Q 011309          294 DTCAVCLERACTVA-AEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVS  351 (489)
Q Consensus       294 ~~C~iCle~~~~v~-~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~  351 (489)
                      -.|.||++..-+.. ..+|||.||..|+-..-              ...||.||..+..
T Consensus        23 l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~--------------~~~CP~Cr~~~~~   67 (97)
T d1jm7b_          23 LRCSRCTNILREPVCLGGCEHIFCSNCVSDCI--------------GTGCPVCYTPAWI   67 (97)
T ss_dssp             TSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGT--------------TTBCSSSCCBCSC
T ss_pred             CCCccCCchhhcCceeCCCCCchhHHHHHHHH--------------hccccccCCcCch
Confidence            46999999887655 45899999999975542              1249999987653

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0011  Score=49.98  Aligned_cols=55  Identities=9%  Similarity=-0.077  Sum_probs=41.1

Q ss_pred             CcchhhhhhhhcccccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCC
Q 011309          292 DADTCAVCLERACTVAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPG  357 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~  357 (489)
                      +.-.|.+|++-.-+....+|||.+|..|+...=...           ...||+||..|....-.|.
T Consensus         6 ~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~-----------~~~cP~c~~~l~~~~l~pN   60 (80)
T d2c2la2           6 DYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-----------GHFNPVTRSPLTQEQLIPN   60 (80)
T ss_dssp             STTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-----------CSSCTTTCCCCCGGGCEEC
T ss_pred             ccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcC-----------CccCCCccccccccccccH
Confidence            345699999999888899999999999988753221           1249999998865443343

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=95.34  E-value=0.0035  Score=44.27  Aligned_cols=50  Identities=16%  Similarity=0.391  Sum_probs=36.2

Q ss_pred             CCCcchhhhhhhhcccccccCC-----cchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCccccc
Q 011309          290 SDDADTCAVCLERACTVAAEGC-----RHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGI  349 (489)
Q Consensus       290 ~~~~~~C~iCle~~~~v~~~~C-----~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I  349 (489)
                      ..+...|.||++..-.....+|     +|.++..|....-....          ...||+||..+
T Consensus         3 ded~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~----------~~~CP~Cr~~~   57 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISR----------NTACQICGVVY   57 (60)
T ss_dssp             TCSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHT----------CSBCTTTCCBC
T ss_pred             CCCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCC----------CCCCcccCCee
Confidence            3466789999987665555555     59999999998854332          23599999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.99  E-value=0.0043  Score=47.96  Aligned_cols=52  Identities=19%  Similarity=0.397  Sum_probs=36.2

Q ss_pred             CCcchhhhhhhhccc---ccccCCcchhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcc
Q 011309          291 DDADTCAVCLERACT---VAAEGCRHELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCR  346 (489)
Q Consensus       291 ~~~~~C~iCle~~~~---v~~~~C~H~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR  346 (489)
                      ++...|.||++....   +...+|+|.+|..|..........    .+....+.||.|+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~----~~~~~~i~CP~~~   57 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIK----EGLETAISCPDAA   57 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHH----HCSCCCEECSCTT
T ss_pred             CCCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHh----cCCccccCCcCCC
Confidence            567889999998643   455789999999999887644311    1122356799854

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.90  E-value=0.092  Score=40.53  Aligned_cols=55  Identities=9%  Similarity=-0.025  Sum_probs=40.5

Q ss_pred             CcchhhhhhhhcccccccCCcc-hhhhhHHHHhhhcCCCCCCCCCCCCCCCCCCcccccccceecCCC
Q 011309          292 DADTCAVCLERACTVAAEGCRH-ELCVRCALYLCSTNNIPSEMVGPPGSIPCPLCRHGIVSFTKLPGS  358 (489)
Q Consensus       292 ~~~~C~iCle~~~~v~~~~C~H-~~C~~C~~~lC~~~~~~~~~~~~~~~~~CP~CR~~I~~~~~~~~~  358 (489)
                      +.-.|.||++-.-+.+..+|+| .+|..|+...-..            ...||+||..+..-.-+|..
T Consensus        21 ~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~------------~~~~P~~~~~l~~~~L~pN~   76 (98)
T d1wgma_          21 DEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS------------DQTDPFNRSPLTMDQIRPNT   76 (98)
T ss_dssp             TTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT------------SCBCTTTCSBCCTTTSEECH
T ss_pred             HHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh------------cCCcccccccccchhhcchH
Confidence            3578999999999998888775 6999999886321            12499999988654444443